Query 027904
Match_columns 217
No_of_seqs 310 out of 1720
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 5.5E-25 1.2E-29 164.4 11.8 104 98-211 45-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 5.3E-24 1.2E-28 153.1 12.1 101 101-209 5-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 1E-22 2.3E-27 146.2 13.9 102 101-209 1-102 (103)
4 PHA02278 thioredoxin-like prot 99.9 1E-22 2.2E-27 146.1 13.1 94 101-205 2-100 (103)
5 cd02948 TRX_NDPK TRX domain, T 99.9 2.5E-22 5.3E-27 144.0 14.0 99 99-208 3-101 (102)
6 cd02954 DIM1 Dim1 family; Dim1 99.9 1.3E-22 2.8E-27 147.1 11.4 84 102-194 1-84 (114)
7 PF00085 Thioredoxin: Thioredo 99.9 5.9E-22 1.3E-26 141.1 13.6 99 101-209 4-103 (103)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.9E-22 6.4E-27 146.0 11.9 103 95-206 9-113 (113)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.6E-22 1E-26 142.1 11.9 98 96-205 2-100 (101)
10 cd03065 PDI_b_Calsequestrin_N 99.9 8.1E-22 1.8E-26 144.8 12.9 104 96-210 10-119 (120)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.3E-21 2.7E-26 140.4 12.3 99 97-206 3-104 (104)
12 KOG0908 Thioredoxin-like prote 99.9 8.2E-22 1.8E-26 157.4 12.0 109 96-214 2-110 (288)
13 PLN00410 U5 snRNP protein, DIM 99.9 3.3E-21 7.2E-26 144.9 13.4 108 97-213 5-123 (142)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.2E-21 6.9E-26 139.5 12.7 102 96-206 2-108 (108)
15 cd02956 ybbN ybbN protein fami 99.9 3.8E-21 8.2E-26 135.9 12.2 94 105-207 2-96 (96)
16 COG3118 Thioredoxin domain-con 99.9 2.1E-21 4.6E-26 159.5 12.4 108 96-212 24-132 (304)
17 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.3E-20 2.9E-25 137.5 13.8 100 95-206 4-112 (113)
18 cd02963 TRX_DnaJ TRX domain, D 99.9 7.8E-21 1.7E-25 138.3 12.3 101 102-209 10-111 (111)
19 PRK09381 trxA thioredoxin; Pro 99.9 2E-20 4.4E-25 135.3 14.2 105 95-210 3-108 (109)
20 PRK10996 thioredoxin 2; Provis 99.9 2.4E-20 5.1E-25 141.1 14.9 102 97-210 37-139 (139)
21 cd02994 PDI_a_TMX PDIa family, 99.9 1.5E-20 3.2E-25 134.1 12.1 100 96-208 2-101 (101)
22 PTZ00051 thioredoxin; Provisio 99.8 2.6E-20 5.7E-25 132.0 12.9 96 97-204 2-97 (98)
23 cd02999 PDI_a_ERp44_like PDIa 99.8 1.1E-20 2.3E-25 135.1 10.9 92 104-206 7-100 (100)
24 cd02984 TRX_PICOT TRX domain, 99.8 3.4E-20 7.4E-25 131.1 12.9 96 102-206 1-96 (97)
25 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.8E-20 8.3E-25 131.9 12.4 99 98-206 3-102 (102)
26 cd02957 Phd_like Phosducin (Ph 99.8 6.8E-20 1.5E-24 133.7 13.5 91 94-195 3-93 (113)
27 cd02986 DLP Dim1 family, Dim1- 99.8 8.9E-20 1.9E-24 131.5 12.3 98 103-209 2-110 (114)
28 cd03002 PDI_a_MPD1_like PDI fa 99.8 7.2E-20 1.6E-24 132.1 11.8 99 97-206 2-108 (109)
29 PTZ00443 Thioredoxin domain-co 99.8 1.5E-19 3.3E-24 146.3 14.8 109 96-212 31-141 (224)
30 cd02997 PDI_a_PDIR PDIa family 99.8 1.5E-19 3.3E-24 129.1 12.5 100 97-206 2-104 (104)
31 KOG0190 Protein disulfide isom 99.8 3.2E-20 6.9E-25 163.3 10.4 113 94-215 24-137 (493)
32 cd02965 HyaE HyaE family; HyaE 99.8 1.5E-19 3.3E-24 130.3 11.2 91 102-203 16-109 (111)
33 cd02962 TMX2 TMX2 family; comp 99.8 4.6E-19 1E-23 135.5 14.5 92 95-195 28-125 (152)
34 cd03000 PDI_a_TMX3 PDIa family 99.8 2.5E-19 5.5E-24 128.7 11.6 98 103-209 6-103 (104)
35 cd02987 Phd_like_Phd Phosducin 99.8 6E-19 1.3E-23 138.2 14.6 106 94-209 61-174 (175)
36 cd03001 PDI_a_P5 PDIa family, 99.8 5.9E-19 1.3E-23 125.9 13.0 99 97-206 2-102 (103)
37 cd02950 TxlA TRX-like protein 99.8 5.1E-19 1.1E-23 134.2 13.0 101 103-212 10-112 (142)
38 TIGR01068 thioredoxin thioredo 99.8 9.4E-19 2E-23 123.9 13.6 99 102-210 2-101 (101)
39 TIGR01126 pdi_dom protein disu 99.8 6E-19 1.3E-23 125.4 12.0 100 102-210 2-102 (102)
40 cd02953 DsbDgamma DsbD gamma f 99.8 3.7E-19 8E-24 127.7 10.3 97 104-207 2-104 (104)
41 cd02993 PDI_a_APS_reductase PD 99.8 1.6E-18 3.5E-23 125.6 12.1 103 96-206 2-109 (109)
42 cd02949 TRX_NTR TRX domain, no 99.8 3.3E-18 7.2E-23 121.3 12.7 92 106-207 5-97 (97)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 2.5E-18 5.3E-23 122.7 11.1 100 97-206 2-104 (104)
44 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.4E-18 5.2E-23 122.9 10.4 101 97-206 2-105 (105)
45 cd02992 PDI_a_QSOX PDIa family 99.8 2.3E-18 5E-23 125.9 9.9 90 96-191 2-91 (114)
46 cd03007 PDI_a_ERp29_N PDIa fam 99.8 7.9E-18 1.7E-22 122.5 10.9 101 97-209 3-115 (116)
47 PTZ00102 disulphide isomerase; 99.8 1.2E-17 2.6E-22 149.6 14.4 110 96-214 33-142 (477)
48 TIGR01130 ER_PDI_fam protein d 99.8 1.5E-17 3.2E-22 147.9 14.1 109 97-214 3-113 (462)
49 PTZ00062 glutaredoxin; Provisi 99.8 1.5E-17 3.3E-22 132.6 12.7 94 101-213 4-97 (204)
50 cd02961 PDI_a_family Protein D 99.8 1.4E-17 3E-22 117.3 11.0 96 102-206 4-101 (101)
51 cd02951 SoxW SoxW family; SoxW 99.8 1.5E-17 3.3E-22 123.2 11.6 102 104-212 4-121 (125)
52 TIGR01295 PedC_BrcD bacterioci 99.7 4.1E-17 8.9E-22 120.6 13.2 101 97-207 8-121 (122)
53 cd02975 PfPDO_like_N Pyrococcu 99.7 3.5E-17 7.7E-22 119.4 12.6 88 116-211 21-111 (113)
54 cd02988 Phd_like_VIAF Phosduci 99.7 4.6E-17 9.9E-22 129.2 14.0 103 93-208 80-190 (192)
55 KOG4277 Uncharacterized conser 99.7 8.4E-18 1.8E-22 138.0 7.8 105 104-213 31-135 (468)
56 cd02952 TRP14_like Human TRX-r 99.7 5.3E-17 1.1E-21 119.0 10.8 102 100-206 6-118 (119)
57 PLN02309 5'-adenylylsulfate re 99.7 1.3E-16 2.9E-21 140.9 14.3 113 89-209 339-456 (457)
58 cd02947 TRX_family TRX family; 99.7 1.7E-16 3.8E-21 109.6 11.3 90 105-206 2-92 (93)
59 TIGR00424 APS_reduc 5'-adenyly 99.7 1.7E-16 3.7E-21 140.3 13.7 112 90-209 346-462 (463)
60 PRK00293 dipZ thiol:disulfide 99.7 2.1E-16 4.6E-21 144.3 13.2 111 96-210 453-570 (571)
61 PTZ00102 disulphide isomerase; 99.7 3.8E-16 8.2E-21 139.9 13.1 112 96-216 358-471 (477)
62 cd02959 ERp19 Endoplasmic reti 99.7 7.2E-17 1.6E-21 118.5 6.0 99 105-209 7-112 (117)
63 cd02982 PDI_b'_family Protein 99.6 4.5E-15 9.7E-20 105.9 10.9 87 117-210 12-103 (103)
64 KOG0912 Thiol-disulfide isomer 99.6 7.3E-16 1.6E-20 126.7 7.2 105 102-214 2-110 (375)
65 TIGR00411 redox_disulf_1 small 99.6 9.5E-15 2.1E-19 99.9 11.0 81 120-210 2-82 (82)
66 KOG0190 Protein disulfide isom 99.6 9.9E-16 2.2E-20 135.1 7.2 104 97-211 368-474 (493)
67 cd02955 SSP411 TRX domain, SSP 99.6 1.1E-14 2.3E-19 107.7 10.3 80 110-196 8-99 (124)
68 TIGR01130 ER_PDI_fam protein d 99.6 1.4E-14 3.1E-19 128.8 11.2 110 96-215 347-459 (462)
69 TIGR02187 GlrX_arch Glutaredox 99.5 7.3E-14 1.6E-18 113.0 12.2 89 117-211 19-112 (215)
70 PF13098 Thioredoxin_2: Thiore 99.5 2.9E-14 6.2E-19 103.3 8.4 90 114-206 2-112 (112)
71 PHA02125 thioredoxin-like prot 99.5 7E-14 1.5E-18 94.5 9.1 70 121-206 2-73 (75)
72 cd02958 UAS UAS family; UAS is 99.5 8.4E-13 1.8E-17 96.3 12.5 103 104-211 4-112 (114)
73 PRK15412 thiol:disulfide inter 99.5 3.8E-13 8.3E-18 106.3 11.5 89 117-211 68-177 (185)
74 KOG0191 Thioredoxin/protein di 99.5 1.9E-13 4.1E-18 119.6 10.6 102 103-214 36-138 (383)
75 TIGR02187 GlrX_arch Glutaredox 99.5 5.3E-13 1.1E-17 108.0 12.1 82 117-208 133-214 (215)
76 cd03008 TryX_like_RdCVF Trypar 99.5 4.5E-13 9.9E-18 101.7 10.6 78 117-194 25-129 (146)
77 TIGR02740 TraF-like TraF-like 99.5 1.2E-12 2.6E-17 109.3 13.5 92 116-212 165-266 (271)
78 TIGR02738 TrbB type-F conjugat 99.5 4.5E-13 9.9E-18 102.6 9.9 89 117-210 50-153 (153)
79 PRK14018 trifunctional thiored 99.5 6.1E-13 1.3E-17 119.3 12.1 90 117-208 56-171 (521)
80 TIGR00385 dsbE periplasmic pro 99.5 7.2E-13 1.6E-17 103.7 11.1 89 117-211 63-172 (173)
81 TIGR00412 redox_disulf_2 small 99.4 1.4E-12 3.1E-17 88.3 10.6 73 121-206 2-75 (76)
82 cd03009 TryX_like_TryX_NRX Try 99.4 5.9E-13 1.3E-17 99.2 9.5 78 117-194 18-116 (131)
83 PF13905 Thioredoxin_8: Thiore 99.4 1.7E-12 3.8E-17 91.1 10.8 73 117-190 1-95 (95)
84 cd02964 TryX_like_family Trypa 99.4 8.7E-13 1.9E-17 98.6 9.4 79 116-194 16-116 (132)
85 COG4232 Thiol:disulfide interc 99.4 1.4E-12 3E-17 116.5 9.8 107 98-210 457-568 (569)
86 KOG1731 FAD-dependent sulfhydr 99.4 2.8E-13 6E-18 119.9 5.3 86 95-186 39-124 (606)
87 PRK03147 thiol-disulfide oxido 99.4 6.9E-12 1.5E-16 97.5 12.4 91 117-209 61-171 (173)
88 cd03010 TlpA_like_DsbE TlpA-li 99.4 3.7E-12 8.1E-17 94.3 10.2 81 117-202 25-126 (127)
89 cd02973 TRX_GRX_like Thioredox 99.4 3.1E-12 6.7E-17 84.2 8.7 61 121-191 3-63 (67)
90 cd02960 AGR Anterior Gradient 99.4 6E-13 1.3E-17 98.7 5.2 87 100-194 6-96 (130)
91 KOG0191 Thioredoxin/protein di 99.4 3.9E-12 8.4E-17 111.4 10.8 108 97-213 146-255 (383)
92 PF13899 Thioredoxin_7: Thiore 99.4 2.5E-12 5.4E-17 88.3 6.9 75 104-186 4-81 (82)
93 smart00594 UAS UAS domain. 99.4 5.6E-12 1.2E-16 93.1 9.3 100 102-206 12-121 (122)
94 PLN02919 haloacid dehalogenase 99.3 7.8E-12 1.7E-16 121.4 12.4 93 117-211 420-537 (1057)
95 PRK11509 hydrogenase-1 operon 99.3 2.9E-11 6.3E-16 89.8 12.4 104 102-215 23-129 (132)
96 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 2.4E-11 5.2E-16 84.8 11.2 75 117-202 12-86 (89)
97 PRK13728 conjugal transfer pro 99.3 5.9E-11 1.3E-15 92.9 12.0 87 121-212 73-173 (181)
98 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 3.1E-11 6.8E-16 88.6 9.4 84 117-205 20-121 (123)
99 cd02967 mauD Methylamine utili 99.3 4E-11 8.7E-16 86.9 8.9 73 117-193 21-111 (114)
100 cd03012 TlpA_like_DipZ_like Tl 99.2 6.4E-11 1.4E-15 87.7 10.0 78 117-196 23-124 (126)
101 cd02966 TlpA_like_family TlpA- 99.2 6.3E-11 1.4E-15 84.6 9.6 77 117-195 19-115 (116)
102 PLN02399 phospholipid hydroper 99.2 1.4E-10 3E-15 94.8 12.2 93 117-211 99-235 (236)
103 PF08534 Redoxin: Redoxin; In 99.2 1E-10 2.2E-15 88.6 10.6 79 116-196 27-133 (146)
104 TIGR02661 MauD methylamine deh 99.2 2E-10 4.4E-15 91.1 11.7 90 117-209 74-178 (189)
105 PTZ00056 glutathione peroxidas 99.2 2.1E-10 4.5E-15 91.7 11.0 94 117-212 39-180 (199)
106 TIGR01626 ytfJ_HI0045 conserve 99.2 2.4E-10 5.1E-15 89.9 9.4 85 116-206 58-176 (184)
107 PF06110 DUF953: Eukaryotic pr 99.1 3E-10 6.5E-15 83.0 8.3 104 101-207 3-118 (119)
108 TIGR02540 gpx7 putative glutat 99.1 1.9E-09 4.1E-14 82.5 11.8 92 117-210 22-153 (153)
109 TIGR02196 GlrX_YruB Glutaredox 99.1 8.8E-10 1.9E-14 73.0 8.4 73 121-207 2-74 (74)
110 PLN02412 probable glutathione 99.1 2.1E-09 4.5E-14 83.6 11.7 94 117-212 29-166 (167)
111 PF02114 Phosducin: Phosducin; 99.0 9.7E-10 2.1E-14 91.3 9.1 106 94-209 124-237 (265)
112 cd02969 PRX_like1 Peroxiredoxi 99.0 5.5E-09 1.2E-13 81.3 12.4 96 117-214 25-156 (171)
113 KOG1672 ATP binding protein [P 99.0 8.6E-10 1.9E-14 85.7 7.4 89 94-194 65-153 (211)
114 cd00340 GSH_Peroxidase Glutath 99.0 2.6E-09 5.6E-14 81.7 10.0 86 117-205 22-151 (152)
115 COG0526 TrxA Thiol-disulfide i 99.0 2.5E-09 5.3E-14 75.9 8.7 84 117-207 32-121 (127)
116 KOG0914 Thioredoxin-like prote 99.0 4.9E-10 1.1E-14 88.6 5.1 93 94-194 123-221 (265)
117 KOG2501 Thioredoxin, nucleored 99.0 1.5E-09 3.4E-14 82.2 7.7 78 117-194 33-132 (157)
118 PF03190 Thioredox_DsbH: Prote 99.0 4.1E-09 8.9E-14 80.9 8.9 81 108-195 28-120 (163)
119 cd02991 UAS_ETEA UAS family, E 98.9 2E-08 4.3E-13 73.5 11.4 99 105-211 5-114 (116)
120 COG2143 Thioredoxin-related pr 98.9 1.9E-08 4.2E-13 75.7 10.4 95 110-207 35-146 (182)
121 KOG0913 Thiol-disulfide isomer 98.9 5.3E-10 1.2E-14 89.3 1.0 103 96-211 25-127 (248)
122 TIGR02200 GlrX_actino Glutared 98.8 3.2E-08 7E-13 66.3 7.8 70 121-207 2-76 (77)
123 cd03017 PRX_BCP Peroxiredoxin 98.8 4.4E-08 9.6E-13 73.3 9.0 87 117-205 23-138 (140)
124 PF14595 Thioredoxin_9: Thiore 98.8 7.1E-08 1.5E-12 71.8 9.9 82 117-207 41-126 (129)
125 KOG0911 Glutaredoxin-related p 98.8 7E-09 1.5E-13 82.6 4.4 102 97-212 3-104 (227)
126 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 5.4E-08 1.2E-12 71.2 8.9 74 117-192 25-123 (124)
127 KOG3425 Uncharacterized conser 98.8 3E-08 6.5E-13 71.3 6.9 83 101-187 10-104 (128)
128 PTZ00256 glutathione peroxidas 98.8 1.3E-07 2.8E-12 74.6 11.1 93 117-211 40-182 (183)
129 cd03015 PRX_Typ2cys Peroxiredo 98.7 1.2E-07 2.5E-12 74.1 10.4 92 117-210 29-157 (173)
130 cd01659 TRX_superfamily Thiore 98.7 6.1E-08 1.3E-12 61.0 7.3 60 121-188 1-63 (69)
131 TIGR03137 AhpC peroxiredoxin. 98.7 1.5E-07 3.3E-12 74.5 10.7 90 117-208 31-154 (187)
132 PRK00522 tpx lipid hydroperoxi 98.7 1.5E-07 3.2E-12 73.2 10.4 87 117-207 44-166 (167)
133 PRK11200 grxA glutaredoxin 1; 98.7 1.8E-07 4E-12 64.4 9.6 81 120-211 2-84 (85)
134 PF13728 TraF: F plasmid trans 98.7 4E-07 8.7E-12 73.6 12.4 94 106-206 111-214 (215)
135 PF11009 DUF2847: Protein of u 98.7 1E-06 2.2E-11 62.8 12.0 100 98-202 2-104 (105)
136 KOG3414 Component of the U4/U6 98.6 3.8E-07 8.3E-12 66.2 9.3 103 98-209 6-119 (142)
137 cd03014 PRX_Atyp2cys Peroxired 98.6 2.5E-07 5.3E-12 69.7 8.9 74 117-194 26-126 (143)
138 TIGR02180 GRX_euk Glutaredoxin 98.6 2.5E-07 5.4E-12 63.0 8.0 75 121-207 1-76 (84)
139 PRK10606 btuE putative glutath 98.6 3.6E-07 7.9E-12 72.0 9.9 42 117-161 25-66 (183)
140 PRK10382 alkyl hydroperoxide r 98.6 6.9E-07 1.5E-11 70.7 11.3 92 117-210 31-156 (187)
141 cd03018 PRX_AhpE_like Peroxire 98.6 4.6E-07 1E-11 68.5 10.0 88 118-207 29-148 (149)
142 cd02970 PRX_like2 Peroxiredoxi 98.6 4.5E-07 9.8E-12 68.3 9.5 42 117-160 24-65 (149)
143 PF13192 Thioredoxin_3: Thiore 98.6 1.5E-06 3.3E-11 58.5 10.5 74 122-207 3-76 (76)
144 PRK13190 putative peroxiredoxi 98.6 7.6E-07 1.6E-11 71.4 10.4 92 117-210 27-154 (202)
145 PRK15000 peroxidase; Provision 98.6 8.3E-07 1.8E-11 71.0 10.5 92 117-210 34-162 (200)
146 PRK09437 bcp thioredoxin-depen 98.5 7.5E-07 1.6E-11 68.0 9.8 78 117-196 30-138 (154)
147 PF01216 Calsequestrin: Calseq 98.5 2E-06 4.4E-11 72.8 12.5 109 95-213 34-147 (383)
148 TIGR02739 TraF type-F conjugat 98.5 4.3E-06 9.3E-11 69.1 13.2 101 107-212 142-250 (256)
149 TIGR02183 GRXA Glutaredoxin, G 98.4 1.7E-06 3.6E-11 59.8 8.5 80 121-211 2-83 (86)
150 cd02976 NrdH NrdH-redoxin (Nrd 98.4 2.3E-06 4.9E-11 56.2 8.5 72 121-206 2-73 (73)
151 cd02968 SCO SCO (an acronym fo 98.4 1.5E-06 3.2E-11 65.1 8.1 44 117-160 22-67 (142)
152 cd02971 PRX_family Peroxiredox 98.4 2E-06 4.3E-11 64.2 8.6 78 117-196 22-128 (140)
153 PTZ00137 2-Cys peroxiredoxin; 98.4 6.4E-06 1.4E-10 68.4 11.2 91 117-209 98-224 (261)
154 PRK10877 protein disulfide iso 98.3 5.7E-06 1.2E-10 67.7 10.8 85 116-209 106-230 (232)
155 PRK13703 conjugal pilus assemb 98.3 9E-06 1.9E-10 66.9 11.6 101 107-212 135-243 (248)
156 PRK13599 putative peroxiredoxi 98.3 5E-06 1.1E-10 67.3 9.9 91 117-209 28-155 (215)
157 PRK13191 putative peroxiredoxi 98.3 5.8E-06 1.3E-10 66.9 10.3 91 117-209 33-160 (215)
158 PF00462 Glutaredoxin: Glutare 98.3 4.8E-06 1E-10 53.3 7.9 60 121-191 1-60 (60)
159 PRK13189 peroxiredoxin; Provis 98.3 6.6E-06 1.4E-10 66.9 10.5 92 117-210 35-163 (222)
160 PF02966 DIM1: Mitosis protein 98.3 2.5E-05 5.3E-10 57.5 11.3 102 98-209 3-116 (133)
161 cd03016 PRX_1cys Peroxiredoxin 98.3 9.8E-06 2.1E-10 65.0 10.2 90 119-210 28-154 (203)
162 cd03419 GRX_GRXh_1_2_like Glut 98.2 1.2E-05 2.7E-10 54.4 8.4 63 121-192 2-65 (82)
163 PTZ00253 tryparedoxin peroxida 98.2 2.1E-05 4.6E-10 62.8 11.1 91 117-209 36-163 (199)
164 TIGR02190 GlrX-dom Glutaredoxi 98.2 1.6E-05 3.4E-10 53.9 8.8 73 117-206 6-78 (79)
165 PF13848 Thioredoxin_6: Thiore 98.2 4.8E-05 1.1E-09 59.2 12.3 101 96-208 78-184 (184)
166 KOG3171 Conserved phosducin-li 98.2 7.9E-06 1.7E-10 64.8 7.5 106 94-209 137-250 (273)
167 TIGR03143 AhpF_homolog putativ 98.2 2.5E-05 5.4E-10 71.8 11.8 79 117-206 475-554 (555)
168 PRK10329 glutaredoxin-like pro 98.2 3.7E-05 7.9E-10 52.5 9.7 77 121-212 3-79 (81)
169 cd02981 PDI_b_family Protein D 98.1 7.5E-05 1.6E-09 52.2 10.0 93 98-208 2-96 (97)
170 cd02066 GRX_family Glutaredoxi 98.0 3.6E-05 7.8E-10 50.1 7.8 61 121-192 2-62 (72)
171 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 4.1E-05 8.9E-10 61.0 9.5 83 116-206 76-197 (197)
172 PF07449 HyaE: Hydrogenase-1 e 98.0 6.3E-05 1.4E-09 53.9 9.1 92 96-200 10-105 (107)
173 TIGR02194 GlrX_NrdH Glutaredox 98.0 3E-05 6.5E-10 51.5 6.9 70 122-205 2-71 (72)
174 PRK15317 alkyl hydroperoxide r 98.0 8.9E-05 1.9E-09 67.5 11.6 83 117-210 116-198 (517)
175 cd03023 DsbA_Com1_like DsbA fa 97.9 0.00015 3.3E-09 54.5 10.4 33 116-148 4-36 (154)
176 cd03029 GRX_hybridPRX5 Glutare 97.9 0.00016 3.5E-09 47.8 9.0 69 121-206 3-71 (72)
177 PF13462 Thioredoxin_4: Thiore 97.9 0.00036 7.8E-09 53.1 11.8 85 117-208 12-162 (162)
178 TIGR00365 monothiol glutaredox 97.9 0.00023 5E-09 50.2 9.9 73 104-192 3-79 (97)
179 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00078 1.7E-08 49.1 11.8 108 97-211 6-120 (126)
180 cd03028 GRX_PICOT_like Glutare 97.8 0.00026 5.6E-09 49.2 8.6 64 118-192 8-75 (90)
181 PHA03050 glutaredoxin; Provisi 97.8 0.00017 3.6E-09 52.0 7.8 68 121-194 15-83 (108)
182 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.00019 4E-09 47.7 7.4 61 121-192 3-63 (73)
183 PRK11657 dsbG disulfide isomer 97.8 0.00045 9.8E-09 57.2 11.2 87 116-207 116-249 (251)
184 cd02983 P5_C P5 family, C-term 97.8 0.0011 2.5E-08 49.3 12.3 107 96-213 3-118 (130)
185 cd03418 GRX_GRXb_1_3_like Glut 97.7 0.00023 4.9E-09 47.3 7.5 61 121-192 2-63 (75)
186 TIGR03140 AhpF alkyl hydropero 97.7 0.00048 1E-08 62.8 11.8 82 117-209 117-198 (515)
187 TIGR02181 GRX_bact Glutaredoxi 97.7 0.00016 3.4E-09 48.7 6.4 61 121-192 1-61 (79)
188 TIGR02189 GlrX-like_plant Glut 97.7 6.7E-05 1.4E-09 53.2 4.7 61 121-193 10-74 (99)
189 cd03072 PDI_b'_ERp44 PDIb' fam 97.7 0.00055 1.2E-08 49.5 9.4 97 102-211 5-109 (111)
190 cd03019 DsbA_DsbA DsbA family, 97.6 0.00057 1.2E-08 52.9 9.3 32 117-148 15-46 (178)
191 PRK10638 glutaredoxin 3; Provi 97.5 0.00057 1.2E-08 46.6 7.3 61 121-192 4-64 (83)
192 KOG2603 Oligosaccharyltransfer 97.5 0.00058 1.3E-08 57.3 8.5 110 95-210 40-166 (331)
193 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0025 5.5E-08 46.1 10.0 97 102-210 5-111 (111)
194 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0034 7.3E-08 44.2 9.3 102 97-208 3-110 (112)
195 COG1331 Highly conserved prote 97.3 0.00054 1.2E-08 63.1 6.9 82 102-194 32-125 (667)
196 cd02972 DsbA_family DsbA famil 97.3 0.0015 3.3E-08 44.7 7.8 63 121-186 1-91 (98)
197 PRK10954 periplasmic protein d 97.3 0.0022 4.7E-08 51.5 9.7 38 117-157 37-77 (207)
198 KOG3170 Conserved phosducin-li 97.3 0.0019 4.2E-08 51.0 8.3 104 93-209 89-200 (240)
199 PF05768 DUF836: Glutaredoxin- 97.3 0.0021 4.5E-08 43.7 7.5 77 121-207 2-81 (81)
200 PRK10824 glutaredoxin-4; Provi 97.2 0.002 4.4E-08 46.9 7.3 76 103-194 5-84 (115)
201 COG0695 GrxC Glutaredoxin and 97.1 0.0022 4.8E-08 43.5 6.5 70 121-203 3-74 (80)
202 TIGR03143 AhpF_homolog putativ 97.0 0.01 2.2E-07 54.6 12.1 97 103-209 354-456 (555)
203 cd03069 PDI_b_ERp57 PDIb famil 97.0 0.016 3.4E-07 41.2 10.1 94 97-209 2-103 (104)
204 cd03066 PDI_b_Calsequestrin_mi 96.9 0.023 5E-07 40.2 10.8 95 97-209 2-100 (102)
205 COG1225 Bcp Peroxiredoxin [Pos 96.8 0.023 5E-07 43.6 10.4 93 116-210 29-156 (157)
206 PTZ00062 glutaredoxin; Provisi 96.7 0.012 2.5E-07 47.3 8.5 64 118-192 113-180 (204)
207 KOG1752 Glutaredoxin and relat 96.7 0.016 3.5E-07 41.4 7.9 74 104-192 5-79 (104)
208 PF13848 Thioredoxin_6: Thiore 96.7 0.029 6.2E-07 43.4 10.2 69 135-214 8-79 (184)
209 PF00837 T4_deiodinase: Iodoth 96.6 0.016 3.5E-07 47.2 8.8 111 90-209 77-236 (237)
210 PRK12759 bifunctional gluaredo 96.2 0.016 3.4E-07 51.5 7.0 60 121-192 4-72 (410)
211 cd03013 PRX5_like Peroxiredoxi 95.7 0.03 6.5E-07 42.8 5.9 41 118-160 31-73 (155)
212 cd03068 PDI_b_ERp72 PDIb famil 95.7 0.41 9E-06 34.2 11.4 95 97-209 2-107 (107)
213 PF13743 Thioredoxin_5: Thiore 95.2 0.13 2.9E-06 40.1 7.9 26 123-148 2-27 (176)
214 KOG2507 Ubiquitin regulatory p 95.1 0.26 5.7E-06 43.3 10.1 101 105-210 7-111 (506)
215 cd02990 UAS_FAF1 UAS family, F 95.0 1.1 2.3E-05 33.7 12.9 100 105-210 5-133 (136)
216 cd03031 GRX_GRX_like Glutaredo 94.9 0.11 2.3E-06 39.5 6.4 62 121-193 2-73 (147)
217 cd02977 ArsC_family Arsenate R 94.8 0.028 6E-07 40.0 2.9 79 122-209 2-86 (105)
218 cd03041 GST_N_2GST_N GST_N fam 94.7 0.48 1E-05 31.4 8.6 74 122-209 3-76 (77)
219 cd03040 GST_N_mPGES2 GST_N fam 94.6 0.3 6.6E-06 32.1 7.5 74 121-211 2-77 (77)
220 KOG2640 Thioredoxin [Function 94.3 0.015 3.2E-07 49.0 0.5 88 117-211 76-163 (319)
221 cd03036 ArsC_like Arsenate Red 93.5 0.06 1.3E-06 38.8 2.4 79 122-209 2-87 (111)
222 PHA03075 glutaredoxin-like pro 92.5 0.58 1.3E-05 33.8 6.1 36 118-160 2-37 (123)
223 cd03037 GST_N_GRX2 GST_N famil 92.4 0.61 1.3E-05 30.1 5.9 68 123-207 3-70 (71)
224 PF09673 TrbC_Ftype: Type-F co 92.3 1.9 4.2E-05 31.1 8.9 72 102-187 9-80 (113)
225 PF06491 Disulph_isomer: Disul 92.1 3.8 8.3E-05 30.3 12.3 107 96-210 17-132 (136)
226 TIGR02742 TrbC_Ftype type-F co 92.0 2 4.4E-05 31.9 8.8 91 102-207 10-112 (130)
227 TIGR01617 arsC_related transcr 90.9 0.51 1.1E-05 34.2 4.6 76 122-209 2-87 (117)
228 cd02978 KaiB_like KaiB-like fa 90.6 1.4 3E-05 29.2 6.0 59 120-184 3-61 (72)
229 cd03060 GST_N_Omega_like GST_N 90.6 0.83 1.8E-05 29.5 5.1 59 122-191 2-60 (71)
230 KOG2792 Putative cytochrome C 90.5 2.4 5.3E-05 35.1 8.6 96 117-212 139-277 (280)
231 COG1651 DsbG Protein-disulfide 90.3 3.7 8.1E-05 33.3 9.8 40 166-210 203-243 (244)
232 PRK01655 spxA transcriptional 89.9 0.21 4.6E-06 37.1 1.9 31 121-160 2-32 (131)
233 PRK12559 transcriptional regul 89.6 0.35 7.6E-06 35.9 2.9 22 121-142 2-23 (131)
234 cd03045 GST_N_Delta_Epsilon GS 89.5 2.8 6.1E-05 27.0 7.0 61 122-191 2-62 (74)
235 cd03032 ArsC_Spx Arsenate Redu 89.3 0.38 8.3E-06 34.7 2.8 32 121-161 2-33 (115)
236 cd03059 GST_N_SspA GST_N famil 88.8 4.4 9.6E-05 25.9 7.6 70 122-208 2-71 (73)
237 COG4545 Glutaredoxin-related p 88.5 1.3 2.8E-05 29.6 4.6 61 122-192 5-77 (85)
238 cd03051 GST_N_GTT2_like GST_N 88.3 1.5 3.2E-05 28.1 5.0 62 122-191 2-63 (74)
239 cd02974 AhpF_NTD_N Alkyl hydro 88.3 6.8 0.00015 27.3 10.9 66 103-190 7-72 (94)
240 PF13417 GST_N_3: Glutathione 88.1 5.4 0.00012 26.0 10.9 72 124-212 2-73 (75)
241 COG2761 FrnE Predicted dithiol 88.1 1.5 3.3E-05 35.6 5.8 43 169-214 175-217 (225)
242 PF01323 DSBA: DSBA-like thior 87.2 1.5 3.3E-05 33.9 5.3 39 166-207 155-193 (193)
243 cd03035 ArsC_Yffb Arsenate Red 86.6 1.6 3.5E-05 31.0 4.7 74 122-209 2-84 (105)
244 COG0450 AhpC Peroxiredoxin [Po 85.8 9.4 0.0002 30.3 8.9 93 117-209 33-160 (194)
245 PF02630 SCO1-SenC: SCO1/SenC; 85.6 4.1 8.9E-05 31.6 6.9 45 117-161 52-97 (174)
246 TIGR03140 AhpF alkyl hydropero 85.2 13 0.00029 33.9 11.1 66 103-189 7-72 (515)
247 PRK15317 alkyl hydroperoxide r 85.2 14 0.0003 33.8 11.2 66 103-190 7-72 (517)
248 PF06053 DUF929: Domain of unk 85.1 3.8 8.3E-05 33.9 6.7 33 116-148 57-89 (249)
249 COG0386 BtuE Glutathione perox 85.0 12 0.00025 28.8 8.6 93 116-211 24-161 (162)
250 cd00570 GST_N_family Glutathio 84.9 2.7 5.8E-05 25.9 4.7 58 123-191 3-60 (71)
251 COG1999 Uncharacterized protei 84.9 8.5 0.00018 30.8 8.6 57 117-176 67-127 (207)
252 PRK09301 circadian clock prote 84.8 4.1 8.8E-05 28.9 5.8 81 117-204 5-87 (103)
253 TIGR02654 circ_KaiB circadian 83.9 4.9 0.00011 27.7 5.8 70 118-194 3-72 (87)
254 PRK13344 spxA transcriptional 83.2 1.2 2.6E-05 33.1 2.8 21 121-141 2-22 (132)
255 cd03052 GST_N_GDAP1 GST_N fami 82.0 11 0.00024 24.5 6.9 62 122-192 2-63 (73)
256 cd03024 DsbA_FrnE DsbA family, 78.8 4.5 9.7E-05 31.6 4.9 39 165-206 162-200 (201)
257 COG3019 Predicted metal-bindin 78.2 7 0.00015 29.3 5.3 77 118-209 25-103 (149)
258 cd03056 GST_N_4 GST_N family, 78.0 12 0.00026 23.6 6.1 61 123-192 3-63 (73)
259 COG3531 Predicted protein-disu 77.5 5.4 0.00012 31.8 4.8 43 168-210 164-209 (212)
260 PF08806 Sep15_SelM: Sep15/Sel 76.5 3.3 7.1E-05 27.9 3.0 33 178-210 41-76 (78)
261 COG0278 Glutaredoxin-related p 73.6 13 0.00029 26.3 5.4 76 103-194 5-85 (105)
262 cd03022 DsbA_HCCA_Iso DsbA fam 72.3 8.3 0.00018 29.7 4.8 37 166-206 155-191 (192)
263 PF07689 KaiB: KaiB domain; I 69.1 1.6 3.4E-05 29.7 0.0 54 124-183 3-56 (82)
264 cd03055 GST_N_Omega GST_N fami 68.3 15 0.00032 24.8 4.8 60 121-191 19-78 (89)
265 cd03074 PDI_b'_Calsequestrin_C 67.6 44 0.00094 24.1 9.6 101 102-209 7-119 (120)
266 PF04592 SelP_N: Selenoprotein 67.4 13 0.00027 30.5 4.9 45 117-161 26-71 (238)
267 PF06764 DUF1223: Protein of u 66.3 53 0.0012 26.3 8.2 83 123-212 4-100 (202)
268 KOG2244 Highly conserved prote 64.9 3.4 7.5E-05 37.9 1.3 74 102-186 101-185 (786)
269 KOG0912 Thiol-disulfide isomer 64.1 20 0.00043 30.7 5.5 100 95-210 210-319 (375)
270 PF00255 GSHPx: Glutathione pe 64.0 27 0.00059 24.9 5.6 67 116-185 20-90 (108)
271 PF01323 DSBA: DSBA-like thior 60.5 18 0.0004 27.7 4.7 38 121-160 2-39 (193)
272 cd03053 GST_N_Phi GST_N family 60.2 42 0.00091 21.4 7.8 73 121-207 2-74 (76)
273 cd03025 DsbA_FrnE_like DsbA fa 59.0 15 0.00031 28.4 3.8 27 121-147 3-29 (193)
274 cd03034 ArsC_ArsC Arsenate Red 57.8 8.8 0.00019 27.4 2.2 21 122-142 2-22 (112)
275 cd03025 DsbA_FrnE_like DsbA fa 57.7 13 0.00027 28.7 3.3 24 166-189 157-180 (193)
276 PF09822 ABC_transp_aux: ABC-t 57.4 1.1E+02 0.0023 25.2 11.0 63 117-179 24-89 (271)
277 COG0821 gcpE 1-hydroxy-2-methy 57.3 40 0.00087 29.2 6.3 90 118-210 255-351 (361)
278 TIGR00014 arsC arsenate reduct 56.8 11 0.00024 27.1 2.6 45 122-175 2-49 (114)
279 COG5429 Uncharacterized secret 53.9 46 0.00099 27.4 5.8 88 118-210 42-141 (261)
280 PRK10026 arsenate reductase; P 53.6 16 0.00036 27.4 3.1 22 121-142 4-25 (141)
281 cd03033 ArsC_15kD Arsenate Red 53.0 19 0.00041 25.9 3.3 22 121-142 2-23 (113)
282 PF04134 DUF393: Protein of un 52.3 38 0.00082 23.8 4.8 57 124-189 2-61 (114)
283 COG3634 AhpF Alkyl hydroperoxi 52.1 1.1E+02 0.0024 27.0 8.2 92 103-207 104-195 (520)
284 cd03061 GST_N_CLIC GST_N famil 51.2 79 0.0017 21.8 7.6 70 126-212 19-88 (91)
285 PF04908 SH3BGR: SH3-binding, 50.3 41 0.00088 23.7 4.5 70 122-194 3-80 (99)
286 PRK00366 ispG 4-hydroxy-3-meth 50.1 57 0.0012 28.5 6.2 82 127-209 272-356 (360)
287 PRK13730 conjugal transfer pil 47.4 1.5E+02 0.0032 23.9 8.7 34 167-201 151-185 (212)
288 KOG1651 Glutathione peroxidase 47.1 1.4E+02 0.0029 23.3 7.8 43 116-160 33-75 (171)
289 KOG0852 Alkyl hydroperoxide re 46.7 1.4E+02 0.0031 23.5 8.5 94 116-209 32-160 (196)
290 KOG0911 Glutaredoxin-related p 45.5 78 0.0017 25.8 5.9 73 106-193 128-207 (227)
291 TIGR02743 TraW type-F conjugat 44.5 43 0.00094 26.8 4.4 40 139-191 158-197 (202)
292 PRK09481 sspA stringent starva 44.4 1.5E+02 0.0033 23.2 7.6 77 117-210 7-83 (211)
293 COG1393 ArsC Arsenate reductas 41.4 35 0.00075 24.7 3.1 23 121-143 3-25 (117)
294 PRK10387 glutaredoxin 2; Provi 40.6 1.7E+02 0.0037 22.6 7.4 70 124-210 4-73 (210)
295 KOG4277 Uncharacterized conser 40.3 2.4E+02 0.0053 24.3 8.6 78 116-209 152-230 (468)
296 cd03058 GST_N_Tau GST_N family 39.8 97 0.0021 19.6 7.0 69 123-208 3-72 (74)
297 TIGR00612 ispG_gcpE 1-hydroxy- 39.2 1.2E+02 0.0025 26.5 6.4 79 125-207 261-342 (346)
298 PF13778 DUF4174: Domain of un 35.4 1.7E+02 0.0036 21.0 9.5 89 117-209 10-111 (118)
299 COG1999 Uncharacterized protei 35.4 2.3E+02 0.005 22.6 9.2 57 151-211 132-205 (207)
300 COG3411 Ferredoxin [Energy pro 34.9 88 0.0019 20.2 3.8 30 179-211 17-46 (64)
301 cd03038 GST_N_etherase_LigE GS 34.7 1.2E+02 0.0025 19.8 4.8 69 126-209 13-82 (84)
302 cd03030 GRX_SH3BGR Glutaredoxi 34.7 1.5E+02 0.0033 20.3 5.7 39 152-192 30-72 (92)
303 KOG1364 Predicted ubiquitin re 33.7 63 0.0014 28.1 3.9 50 165-214 141-193 (356)
304 PF02401 LYTB: LytB protein; 33.5 76 0.0016 26.8 4.4 99 102-210 166-278 (281)
305 PF11287 DUF3088: Protein of u 33.1 59 0.0013 23.4 3.1 76 128-210 23-107 (112)
306 PRK13738 conjugal transfer pil 32.9 58 0.0013 26.2 3.4 40 140-191 157-197 (209)
307 PF06953 ArsD: Arsenical resis 32.7 2E+02 0.0043 21.1 7.9 58 152-211 40-103 (123)
308 cd03054 GST_N_Metaxin GST_N fa 32.2 1.3E+02 0.0028 18.8 6.2 59 126-208 13-71 (72)
309 KOG0075 GTP-binding ADP-ribosy 31.9 1.6E+02 0.0036 22.6 5.4 47 134-185 77-129 (186)
310 TIGR02182 GRXB Glutaredoxin, G 30.9 2.6E+02 0.0057 21.9 7.0 69 124-209 3-71 (209)
311 KOG1422 Intracellular Cl- chan 30.7 2.9E+02 0.0063 22.4 7.4 69 128-213 20-88 (221)
312 PF13409 GST_N_2: Glutathione 30.6 1.4E+02 0.0031 18.8 6.4 69 128-208 1-69 (70)
313 COG1107 Archaea-specific RecJ- 29.9 1.6E+02 0.0034 27.8 6.0 79 110-189 336-428 (715)
314 PF04551 GcpE: GcpE protein; 29.3 44 0.00095 29.2 2.3 80 129-209 271-358 (359)
315 cd00862 ProRS_anticodon_zinc P 28.8 53 0.0012 26.1 2.6 29 97-133 128-158 (202)
316 PRK01045 ispH 4-hydroxy-3-meth 28.7 2.3E+02 0.0051 24.1 6.6 101 102-210 167-279 (298)
317 COG3011 Predicted thiol-disulf 28.2 2.6E+02 0.0056 21.0 7.5 68 116-192 5-74 (137)
318 PRK10853 putative reductase; P 27.6 72 0.0016 23.0 2.9 22 121-142 2-23 (118)
319 cd03050 GST_N_Theta GST_N fami 27.0 1.7E+02 0.0037 18.5 8.0 72 123-208 3-74 (76)
320 smart00053 DYNc Dynamin, GTPas 25.9 3.7E+02 0.008 22.0 10.3 86 101-186 87-200 (240)
321 TIGR00216 ispH_lytB (E)-4-hydr 25.2 2.6E+02 0.0057 23.6 6.2 101 102-210 165-277 (280)
322 PF03960 ArsC: ArsC family; I 24.9 1.9E+02 0.0041 20.2 4.7 75 124-209 1-83 (110)
323 TIGR01616 nitro_assoc nitrogen 24.7 1.1E+02 0.0024 22.4 3.4 22 121-142 3-24 (126)
324 cd03375 TPP_OGFOR Thiamine pyr 24.4 1.3E+02 0.0029 23.5 4.2 29 99-127 156-184 (193)
325 PF02775 TPP_enzyme_C: Thiamin 23.7 1.5E+02 0.0033 21.8 4.3 28 97-124 124-153 (153)
326 KOG4163 Prolyl-tRNA synthetase 22.9 70 0.0015 28.8 2.4 30 95-132 465-494 (551)
327 TIGR02177 PorB_KorB 2-oxoacid: 22.8 2.7E+02 0.0059 23.6 5.9 35 100-135 159-193 (287)
328 COG0269 SgbH 3-hexulose-6-phos 22.7 2E+02 0.0043 23.4 4.8 55 97-160 86-140 (217)
329 cd03376 TPP_PFOR_porB_like Thi 22.4 2.7E+02 0.0057 22.6 5.7 31 99-130 172-202 (235)
330 cd03049 GST_N_3 GST_N family, 21.9 2.1E+02 0.0046 17.8 4.5 60 123-191 3-62 (73)
331 PRK11869 2-oxoacid ferredoxin 21.8 2.7E+02 0.0059 23.4 5.7 32 100-132 166-197 (280)
332 PRK11865 pyruvate ferredoxin o 21.8 2.6E+02 0.0057 23.8 5.6 58 98-160 182-243 (299)
333 cd03021 DsbA_GSTK DsbA family, 21.7 1.8E+02 0.004 22.8 4.6 19 168-186 169-187 (209)
334 cd05863 Ig2_VEGFR-3 Second imm 21.6 78 0.0017 20.2 1.9 14 179-192 12-25 (67)
335 PF01216 Calsequestrin: Calseq 21.5 5.7E+02 0.012 22.6 11.8 102 95-213 146-250 (383)
336 PHA02151 hypothetical protein 21.2 51 0.0011 25.4 1.1 14 117-130 203-216 (217)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-25 Score=164.39 Aligned_cols=104 Identities=30% Similarity=0.458 Sum_probs=96.5
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
..+.+.++|++.+.++ +.||+|+|||+||+||+.+.|.++++..++.+ .+.+++||. |++.+++.+|+|.
T Consensus 45 ~~~~s~~~~~~~Vi~S---~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdt----D~~~ela~~Y~I~ 114 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINS---DVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDT----DEHPELAEDYEIS 114 (150)
T ss_pred ccccCHHHHHHHHHcc---CCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEcc----ccccchHhhccee
Confidence 3345899999999885 89999999999999999999999999999988 699999999 9999999999999
Q ss_pred CCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 178 TVPLFHFYKNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 ~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
++||+++|+||+.++++ |..+.+.|.++|++++.
T Consensus 115 avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 115 AVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999999999999998 66899999999999874
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.3e-24 Score=153.06 Aligned_cols=101 Identities=40% Similarity=0.642 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+.++++.....+...+++++|+|||+|||||+.+.|.+.+++.+|++ +.|++||+ |+..+++++++|.++|
T Consensus 5 ~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdv----de~~~~~~~~~V~~~P 76 (106)
T KOG0907|consen 5 ETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDV----DELEEVAKEFNVKAMP 76 (106)
T ss_pred EehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEec----ccCHhHHHhcCceEee
Confidence 345566666666655679999999999999999999999999999987 99999999 6699999999999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027904 181 LFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~k~G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
||+||++|+.+.++.|.+.++|++.|.++
T Consensus 77 Tf~f~k~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 77 TFVFYKGGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred EEEEEECCEEEEEEecCCHHHHHHHHHhc
Confidence 99999999999999999999999988765
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=1e-22 Score=146.24 Aligned_cols=102 Identities=29% Similarity=0.408 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
+|.++|++.+..+ .+++++|+|||+||++|+.+.|.|+++++.+. .+.|+.||+.+ .....+++++|+|.++|
T Consensus 1 ~~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~-~~~~~~l~~~~~V~~~P 73 (103)
T cd02985 1 HSVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDE-NDSTMELCRREKIIEVP 73 (103)
T ss_pred CCHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCC-ChHHHHHHHHcCCCcCC
Confidence 3689999999874 38999999999999999999999999999984 48999999822 12335899999999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027904 181 LFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~k~G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
|++||++|+.+.++.|.++++|.+.+.++
T Consensus 74 t~~~~~~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 74 HFLFYKDGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred EEEEEeCCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999889999999888754
No 4
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=1e-22 Score=146.12 Aligned_cols=94 Identities=16% Similarity=0.320 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchh----HHHHHHcCC
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQ----SEVAERLKI 176 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~----~~l~~~~~I 176 (217)
.+.++|++.+.+ +++++|+|||+||+||+.+.|.++++++++.. .+.|++||+ +.+ .+++++|+|
T Consensus 2 ~~~~~~~~~i~~----~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdv----d~~~~d~~~l~~~~~I 70 (103)
T PHA02278 2 NSLVDLNTAIRQ----KKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNL----DAEDVDREKAVKLFDI 70 (103)
T ss_pred CCHHHHHHHHhC----CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEEC----CccccccHHHHHHCCC
Confidence 478899999964 89999999999999999999999999887544 467899999 543 689999999
Q ss_pred CCCcEEEEEECCEEEEEeCC-CCHHHHHHH
Q 027904 177 KTVPLFHFYKNGALVEAFPT-RDKERIDAA 205 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~v~~~~g-~~~~~l~~~ 205 (217)
.++||+++|++|+.+.++.| .+.+.|.++
T Consensus 71 ~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 71 MSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999999999955 788887764
No 5
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.89 E-value=2.5e-22 Score=144.03 Aligned_cols=99 Identities=30% Similarity=0.518 Sum_probs=89.6
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027904 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~ 178 (217)
++.|.++|+.++.. +++++|+|||+||++|+.+.|.++++++.+.+ ..+.|+.+|+ + ..+++++|+|.+
T Consensus 3 ~i~~~~~~~~~i~~----~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~----d-~~~~~~~~~v~~ 71 (102)
T cd02948 3 EINNQEEWEELLSN----KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEA----D-TIDTLKRYRGKC 71 (102)
T ss_pred EccCHHHHHHHHcc----CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeC----C-CHHHHHHcCCCc
Confidence 46799999999865 89999999999999999999999999998863 2488999999 6 678999999999
Q ss_pred CcEEEEEECCEEEEEeCCCCHHHHHHHHHH
Q 027904 179 VPLFHFYKNGALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 179 ~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~ 208 (217)
+||+++|++|+.+.+..|.+.+.|.++|++
T Consensus 72 ~Pt~~~~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 72 EPTFLFYKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred CcEEEEEECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999988899999999876
No 6
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.89 E-value=1.3e-22 Score=147.14 Aligned_cols=84 Identities=12% Similarity=0.196 Sum_probs=77.1
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|++.+... .+++++|+|||+||+||+.|.|.+++++.++.+ .+.|++||+ +++++++.+|+|.++||
T Consensus 1 ~~~~~~~~i~~~--~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDv----D~~~~la~~~~V~~iPT 71 (114)
T cd02954 1 SGWAVDQAILSE--EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDI----DEVPDFNKMYELYDPPT 71 (114)
T ss_pred CHHHHHHHHhcc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEEC----CCCHHHHHHcCCCCCCE
Confidence 357888888742 378999999999999999999999999999886 489999999 99999999999999999
Q ss_pred EEEEECCEEEEEe
Q 027904 182 FHFYKNGALVEAF 194 (217)
Q Consensus 182 ~~~~k~G~~v~~~ 194 (217)
+++|++|+.+.+.
T Consensus 72 f~~fk~G~~v~~~ 84 (114)
T cd02954 72 VMFFFRNKHMKID 84 (114)
T ss_pred EEEEECCEEEEEE
Confidence 9999999999998
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.89 E-value=5.9e-22 Score=141.10 Aligned_cols=99 Identities=34% Similarity=0.516 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.|.++|++.+.+ .+++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.||+ +++..++++|+|.++|
T Consensus 4 lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~----~~~~~l~~~~~v~~~P 73 (103)
T PF00085_consen 4 LTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDC----DENKELCKKYGVKSVP 73 (103)
T ss_dssp ESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEET----TTSHHHHHHTTCSSSS
T ss_pred CCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhh----hccchhhhccCCCCCC
Confidence 488999999987 379999999999999999999999999999986 699999999 8889999999999999
Q ss_pred EEEEEECCEEEEEe-CCCCHHHHHHHHHHh
Q 027904 181 LFHFYKNGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 181 t~~~~k~G~~v~~~-~g~~~~~l~~~i~~~ 209 (217)
|+++|++|+.+.++ |..+.+.|.+||+++
T Consensus 74 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 74 TIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999888 557999999999986
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=2.9e-22 Score=145.99 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=87.9
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHH-HH
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA-ER 173 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~-~~ 173 (217)
+.+.++ +.++|++++.-. ..+++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||+ +.+..++ ++
T Consensus 9 ~~v~~l-~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~----d~~~~l~~~~ 79 (113)
T cd03006 9 SPVLDF-YKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINC----WWPQGKCRKQ 79 (113)
T ss_pred CCeEEe-chhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEEC----CCChHHHHHh
Confidence 456666 889999874311 1389999999999999999999999999999876 599999999 8888898 59
Q ss_pred cCCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027904 174 LKIKTVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i 206 (217)
|+|.++||+++|++|+....+ |+.+.+.|..|+
T Consensus 80 ~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 80 KHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999999999876666 778999998763
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=4.6e-22 Score=142.10 Aligned_cols=98 Identities=15% Similarity=0.325 Sum_probs=87.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.++.+ +.++|++.+.. +++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||+ ++++.++++++
T Consensus 2 ~~~~l-~~~~f~~~v~~----~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~----~~~~~~~~~~~ 69 (101)
T cd03003 2 EIVTL-DRGDFDAAVNS----GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNC----GDDRMLCRSQG 69 (101)
T ss_pred CeEEc-CHhhHHHHhcC----CCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeC----CccHHHHHHcC
Confidence 35566 78899999865 69999999999999999999999999999876 599999999 88899999999
Q ss_pred CCCCcEEEEEECCEEEEEe-CCCCHHHHHHH
Q 027904 176 IKTVPLFHFYKNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~ 205 (217)
|.++||+++|++|+.+.++ |..+.+.|.+|
T Consensus 70 v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 70 VNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCccCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999999999999888777 66888888876
No 10
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.88 E-value=8.1e-22 Score=144.80 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=92.9
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChh--hH--HhHHHHHHHHHHh--CCCCCCEEEEEEEccCCcchhHH
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGS--CK--YIEQGFSKLCKGS--GDQEAPVIFLKHNVIDEYDEQSE 169 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~~~~v~~~~Vd~~d~~~~~~~ 169 (217)
.+..+ |.++|++.+.++ +.+++++||++||++ |+ .+.|.+.+++.++ .+ ++.|++||+ +++++
T Consensus 10 ~v~~l-t~~nF~~~v~~~---~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~----d~~~~ 78 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKY---DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDS----KKDAK 78 (120)
T ss_pred ceeeC-ChhhHHHHHHhC---CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeC----CCCHH
Confidence 45555 789999999884 789999999999987 99 8899999999987 55 699999999 99999
Q ss_pred HHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhc
Q 027904 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 170 l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~ 210 (217)
++++|+|.++||+++|++|+.+.+.|.++.+.|.+||++..
T Consensus 79 La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 79 VAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998557799999999999764
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.3e-21 Score=140.44 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=87.0
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+.++ +.++|++.+... +++++|+|||+||++|+.+.|.|+++++.+.+ .+.|++||+ +++.+++++|+|
T Consensus 3 v~~l-~~~~f~~~i~~~---~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~i 71 (104)
T cd03004 3 VITL-TPEDFPELVLNR---KEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDC----QKYESLCQQANI 71 (104)
T ss_pred ceEc-CHHHHHHHHhcC---CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEEC----CchHHHHHHcCC
Confidence 4555 789999998763 67999999999999999999999999999866 599999999 889999999999
Q ss_pred CCCcEEEEEECC-EEEEEe-CCCC-HHHHHHHH
Q 027904 177 KTVPLFHFYKNG-ALVEAF-PTRD-KERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~k~G-~~v~~~-~g~~-~~~l~~~i 206 (217)
.++||+++|++| +.+..+ |..+ .++|.+||
T Consensus 72 ~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 72 RAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999999999977 888777 4465 88888875
No 12
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.2e-22 Score=157.41 Aligned_cols=109 Identities=33% Similarity=0.561 Sum_probs=102.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.|..|.++.+|+..+..+ ..+.++|+|+|+||+||+++.|.|..++.+|++ .+|++||+ |++...+..+|
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdV----d~c~~taa~~g 71 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDV----DECRGTAATNG 71 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeH----HHhhchhhhcC
Confidence 477889999999999875 478999999999999999999999999999976 99999999 99999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027904 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~~ 214 (217)
|.++|||++|+||..++.+.|.++..|++.+.++++.++
T Consensus 72 V~amPTFiff~ng~kid~~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 72 VNAMPTFIFFRNGVKIDQIQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred cccCceEEEEecCeEeeeecCCCHHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999987654
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.87 E-value=3.3e-21 Score=144.86 Aligned_cols=108 Identities=9% Similarity=0.150 Sum_probs=93.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+..+.|.++|++++..+ .+++++|+|||+||+||+.+.|.|+++++++.+ .+.|++||+ |++++++.+|+|
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDV----De~~dla~~y~I 75 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDI----TEVPDFNTMYEL 75 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEEC----CCCHHHHHHcCc
Confidence 45678999999999854 479999999999999999999999999999877 588899999 999999999999
Q ss_pred CCCcEEE-EEECCE-EEEEeCC---------CCHHHHHHHHHHhccCC
Q 027904 177 KTVPLFH-FYKNGA-LVEAFPT---------RDKERIDAAILKYTSTT 213 (217)
Q Consensus 177 ~~~Pt~~-~~k~G~-~v~~~~g---------~~~~~l~~~i~~~~~~~ 213 (217)
.+.|+++ ||++|+ .+.+..| .+.++|.+.++.....+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 9777666 889998 8888744 67889998888776443
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=3.2e-21 Score=139.47 Aligned_cols=102 Identities=22% Similarity=0.448 Sum_probs=86.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCC---CCEEEEEEEccCCcchhHHHHH
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE---APVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~---~~v~~~~Vd~~d~~~~~~~l~~ 172 (217)
.++++ +.++|++++.. +++++|+|||+||++|+.+.|.|+++++.+.+.. ..+.|+.||+ +.+.++++
T Consensus 2 ~v~~l-~~~~f~~~i~~----~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~----d~~~~l~~ 72 (108)
T cd02996 2 EIVSL-TSGNIDDILQS----AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC----DKESDIAD 72 (108)
T ss_pred ceEEc-CHhhHHHHHhc----CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC----CCCHHHHH
Confidence 35566 78999998865 7899999999999999999999999998764321 2489999999 88899999
Q ss_pred HcCCCCCcEEEEEECCEEE-EEe-CCCCHHHHHHHH
Q 027904 173 RLKIKTVPLFHFYKNGALV-EAF-PTRDKERIDAAI 206 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k~G~~v-~~~-~g~~~~~l~~~i 206 (217)
+|+|.++||+++|++|+.. ..+ |.++.+.|.+||
T Consensus 73 ~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 73 RYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred hCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999999999843 444 778999998875
No 15
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.86 E-value=3.8e-21 Score=135.92 Aligned_cols=94 Identities=22% Similarity=0.406 Sum_probs=84.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEE
Q 027904 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~ 184 (217)
+|++.+... .+++++|+||++||++|+.+.|.+++++..+.+ .+.++.||+ +....++++|+|.++||+++
T Consensus 2 ~f~~~i~~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~----~~~~~l~~~~~i~~~Pt~~~ 72 (96)
T cd02956 2 NFQQVLQES--TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNC----DAQPQIAQQFGVQALPTVYL 72 (96)
T ss_pred ChHHHHHhc--CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEec----cCCHHHHHHcCCCCCCEEEE
Confidence 577777653 378999999999999999999999999999876 589999999 88999999999999999999
Q ss_pred EECCEEEEEe-CCCCHHHHHHHHH
Q 027904 185 YKNGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 185 ~k~G~~v~~~-~g~~~~~l~~~i~ 207 (217)
|++|+.+.++ |..+.++|..||+
T Consensus 73 ~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 73 FAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EeCCEEeeeecCCCCHHHHHHHhC
Confidence 9999999888 5578999998874
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=159.53 Aligned_cols=108 Identities=23% Similarity=0.413 Sum_probs=98.0
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.+.++ |..+|++.|.+.. ..+||+|+||+|||++|+.+.|.+++++..+.+ .+.+++||| |.++.++.+||
T Consensus 24 ~I~dv-T~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~----D~~p~vAaqfg 94 (304)
T COG3118 24 GIKDV-TEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNC----DAEPMVAAQFG 94 (304)
T ss_pred cceec-hHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecC----CcchhHHHHhC
Confidence 47777 8899988877653 357999999999999999999999999999999 799999999 99999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCC-CCHHHHHHHHHHhccC
Q 027904 176 IKTVPLFHFYKNGALVEAFPT-RDKERIDAAILKYTST 212 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~~g-~~~~~l~~~i~~~~~~ 212 (217)
|.++||++.|++|+++..+.| ...+.|.+||.+++++
T Consensus 95 iqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 95 VQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred cCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999955 6677999999999876
No 17
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.86 E-value=1.3e-20 Score=137.50 Aligned_cols=100 Identities=27% Similarity=0.472 Sum_probs=88.4
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
+.+..|.+.++|.+.+.+ +++++|+||++||++|+.+.|.++++++.+++ +.|++||+ ++.++++++|
T Consensus 4 g~v~~i~~~~~~~~~i~~----~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~----~~~~~l~~~~ 71 (113)
T cd02989 4 GKYREVSDEKEFFEIVKS----SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNA----EKAPFLVEKL 71 (113)
T ss_pred CCeEEeCCHHHHHHHHhC----CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEc----ccCHHHHHHC
Confidence 577888888999999976 78999999999999999999999999998865 89999999 8999999999
Q ss_pred CCCCCcEEEEEECCEEEEEe-C-----C---CCHHHHHHHH
Q 027904 175 KIKTVPLFHFYKNGALVEAF-P-----T---RDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~k~G~~v~~~-~-----g---~~~~~l~~~i 206 (217)
+|.++||+++|++|+.++++ + + .+.+.++.||
T Consensus 72 ~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 72 NIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999999999999886 2 1 3456666665
No 18
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.86 E-value=7.8e-21 Score=138.30 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=87.5
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|++.+... ..+++++|+|||+||++|+.+.|.++++++.+.+. ++.+++||+ +..+.++++++|.++||
T Consensus 10 ~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~----d~~~~l~~~~~V~~~Pt 82 (111)
T cd02963 10 TFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNA----GHERRLARKLGAHSVPA 82 (111)
T ss_pred eHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEec----cccHHHHHHcCCccCCE
Confidence 778887655321 13899999999999999999999999999998642 589999999 88899999999999999
Q ss_pred EEEEECCEEEEEe-CCCCHHHHHHHHHHh
Q 027904 182 FHFYKNGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 182 ~~~~k~G~~v~~~-~g~~~~~l~~~i~~~ 209 (217)
+++|++|+.+.+. |..+.+.|.+||+++
T Consensus 83 ~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 83 IVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999888 448899999999863
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.86 E-value=2e-20 Score=135.33 Aligned_cols=105 Identities=21% Similarity=0.376 Sum_probs=93.3
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
+.++++ +.++|++.+.+ .+++++|+||++||++|+.+.|.|+++++.+.+ .+.++.+|+ +....++++|
T Consensus 3 ~~v~~~-~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~ 71 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNI----DQNPGTAPKY 71 (109)
T ss_pred Ccceee-ChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEEC----CCChhHHHhC
Confidence 456777 66899887654 378999999999999999999999999999876 589999999 8888999999
Q ss_pred CCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 175 KIKTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
+|.++||+++|++|+.+.+. |..+.++|..+|++++
T Consensus 72 ~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999888 5578999999999875
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.85 E-value=2.4e-20 Score=141.06 Aligned_cols=102 Identities=25% Similarity=0.477 Sum_probs=92.0
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+..+ +.++|++++.. +++++|+||++||++|+.+.|.|.++++.+.+ ++.|+++|+ ++++.++++|+|
T Consensus 37 ~i~~-~~~~~~~~i~~----~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~----~~~~~l~~~~~V 104 (139)
T PRK10996 37 VINA-TGETLDKLLQD----DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNT----EAERELSARFRI 104 (139)
T ss_pred CEEc-CHHHHHHHHhC----CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeC----CCCHHHHHhcCC
Confidence 4444 78999998865 89999999999999999999999999998876 699999999 888999999999
Q ss_pred CCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 177 KTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
.++||+++|++|+.+..+ |..+.+.|.+||++++
T Consensus 105 ~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 105 RSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999998 5688999999999763
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=1.5e-20 Score=134.14 Aligned_cols=100 Identities=24% Similarity=0.422 Sum_probs=84.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.++++ +.++|++++. +. ++|+|||+||++|+.+.|.|+++++.+.. .++.+++||+ ++++.++++|+
T Consensus 2 ~v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~----~~~~~~~~~~~ 68 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDV----TQEPGLSGRFF 68 (101)
T ss_pred ceEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEc----cCCHhHHHHcC
Confidence 35666 7889998763 33 78999999999999999999999987653 2599999999 88889999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHH
Q 027904 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~ 208 (217)
|.++||+++|++|+.....|..+.++|.+||++
T Consensus 69 i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 69 VTALPTIYHAKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CcccCEEEEeCCCCEEEecCCCCHHHHHHHHhC
Confidence 999999999999986333377899999999864
No 22
>PTZ00051 thioredoxin; Provisional
Probab=99.85 E-value=2.6e-20 Score=132.02 Aligned_cols=96 Identities=36% Similarity=0.634 Sum_probs=87.7
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+.++.+.++|++++.. +++++|+||++||++|+.+.+.++++++.+.+ +.|+.+|+ ++...++++|+|
T Consensus 2 v~~i~~~~~~~~~~~~----~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~----~~~~~~~~~~~v 69 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQ----NELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDV----DELSEVAEKENI 69 (98)
T ss_pred eEEecCHHHHHHHHhc----CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEEC----cchHHHHHHCCC
Confidence 5678899999999875 89999999999999999999999999998764 89999999 888999999999
Q ss_pred CCCcEEEEEECCEEEEEeCCCCHHHHHH
Q 027904 177 KTVPLFHFYKNGALVEAFPTRDKERIDA 204 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~v~~~~g~~~~~l~~ 204 (217)
.++||+++|++|+.+.++.|...++|.+
T Consensus 70 ~~~Pt~~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 70 TSMPTFKVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred ceeeEEEEEeCCeEEEEEeCCCHHHhhc
Confidence 9999999999999999998888888764
No 23
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=1.1e-20 Score=135.06 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHcCCCCCcEE
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLKIKTVPLF 182 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~-~~~~l~~~~~I~~~Pt~ 182 (217)
.++.+++... .+++++|+|||+||++|+.+.|.|+++++.+++ +.++.||. + .++.++++|+|.++||+
T Consensus 7 ~~~~~~~~~~--~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~----~~~~~~l~~~~~V~~~PT~ 76 (100)
T cd02999 7 NIALDLMAFN--REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEE----SSIKPSLLSRYGVVGFPTI 76 (100)
T ss_pred hHHHHHHHhc--CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEEC----CCCCHHHHHhcCCeecCEE
Confidence 4455555543 489999999999999999999999999999865 78999998 6 77899999999999999
Q ss_pred EEEECCEEEEEe-CCCCHHHHHHHH
Q 027904 183 HFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 183 ~~~k~G~~v~~~-~g~~~~~l~~~i 206 (217)
++|++| .+.++ |..+.+.|.+||
T Consensus 77 ~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 77 LLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEEcCC-ceeEecCCCCHHHHHhhC
Confidence 999999 55566 778999998875
No 24
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.85 E-value=3.4e-20 Score=131.11 Aligned_cols=96 Identities=28% Similarity=0.582 Sum_probs=87.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
|.++|++++..+. +++++|+||++||++|+.+.+.|+++++.+.. .+.++++|+ ++.++++++|+|.++||
T Consensus 1 s~~~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~----~~~~~~~~~~~i~~~Pt 71 (97)
T cd02984 1 SEEEFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEA----EELPEISEKFEITAVPT 71 (97)
T ss_pred CHHHHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEcc----ccCHHHHHhcCCccccE
Confidence 4688999998842 69999999999999999999999999998643 699999999 88899999999999999
Q ss_pred EEEEECCEEEEEeCCCCHHHHHHHH
Q 027904 182 FHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 182 ~~~~k~G~~v~~~~g~~~~~l~~~i 206 (217)
+++|++|+.+.+..|.+.++|.+.|
T Consensus 72 ~~~~~~g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 72 FVFFRNGTIVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEECCEEEEEEeCCCHHHHHHhh
Confidence 9999999999999888999998876
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.84 E-value=3.8e-20 Score=131.86 Aligned_cols=99 Identities=22% Similarity=0.489 Sum_probs=86.1
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
.++ +.++|++.+.. + +++|+|||+||++|+.+.|.|.++++.+.+....+.++.||+ +.+..++++|+|.
T Consensus 3 ~~l-~~~~f~~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~v~ 72 (102)
T cd03005 3 LEL-TEDNFDHHIAE----G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC----TQHRELCSEFQVR 72 (102)
T ss_pred eEC-CHHHHHHHhhc----C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC----CCChhhHhhcCCC
Confidence 445 77899999964 3 599999999999999999999999999875344699999999 8888999999999
Q ss_pred CCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027904 178 TVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 178 ~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i 206 (217)
++||+++|++|+.+.++ |..+.+.|.+||
T Consensus 73 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999999999888776 678888888775
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=6.8e-20 Score=133.71 Aligned_cols=91 Identities=30% Similarity=0.526 Sum_probs=79.9
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+.+.++++ ++|.+.+.... .+++++|+||++||++|+.+.|.++++++++.+ +.|++||+ +++ +++++
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~----~~~-~l~~~ 71 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINA----EKA-FLVNY 71 (113)
T ss_pred CceEEEEcH-HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEc----hhh-HHHHh
Confidence 346777855 99999997631 148999999999999999999999999999865 89999999 777 99999
Q ss_pred cCCCCCcEEEEEECCEEEEEeC
Q 027904 174 LKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~~ 195 (217)
|+|.++||+++|++|+.+.++.
T Consensus 72 ~~i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 72 LDIKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred cCCCcCCEEEEEECCEEEEEEe
Confidence 9999999999999999999873
No 27
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.83 E-value=8.9e-20 Score=131.47 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.++|++++.++ .+++|+|+|+|+||++|+.+.|.|+++++++.+ .+.|++||+ ++.++++++|+|.+.||+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDV----Dev~dva~~y~I~amPtf 72 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDV----DKVPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEec----cccHHHHHhcCceeCcEE
Confidence 57899999875 489999999999999999999999999999865 399999999 999999999999999999
Q ss_pred EEEECCEEEEEe-C----------CCCHHHHHHHHHHh
Q 027904 183 HFYKNGALVEAF-P----------TRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~k~G~~v~~~-~----------g~~~~~l~~~i~~~ 209 (217)
+||++|+.+.-. | -.+.+++...++-.
T Consensus 73 vffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 999999887654 2 13456776666543
No 28
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.83 E-value=7.2e-20 Score=132.14 Aligned_cols=99 Identities=23% Similarity=0.426 Sum_probs=85.0
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch--hHHHHHHc
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERL 174 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~--~~~l~~~~ 174 (217)
+.++ +.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++.+.+ .+.++.+|+ +. +.+++++|
T Consensus 2 v~~l-~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~----~~~~~~~~~~~~ 70 (109)
T cd03002 2 VYEL-TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDC----DEDKNKPLCGKY 70 (109)
T ss_pred eEEc-chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEec----CccccHHHHHHc
Confidence 3445 78899999987 378899999999999999999999999999876 589999999 55 78999999
Q ss_pred CCCCCcEEEEEECCE-----EEEEe-CCCCHHHHHHHH
Q 027904 175 KIKTVPLFHFYKNGA-----LVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~k~G~-----~v~~~-~g~~~~~l~~~i 206 (217)
+|.++||+++|++|+ ....+ |..+.+.|.+||
T Consensus 71 ~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 71 GVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 999999999998775 23333 778999999987
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.83 E-value=1.5e-19 Score=146.28 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=95.7
Q ss_pred ceeecCCHHHHHHHHHhhh-cCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 96 CVREFKTDAEFFKILEKSK-ETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~-~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
.++++ +.++|++.+.... ..+++++|+|||+||++|+.+.|.|+++++.+.+ .+.++.+|+ +++++++++|
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~----~~~~~l~~~~ 102 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDA----TRALNLAKRF 102 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecC----cccHHHHHHc
Confidence 56666 8899999887532 2358999999999999999999999999999886 599999999 8889999999
Q ss_pred CCCCCcEEEEEECCEEEEEeCC-CCHHHHHHHHHHhccC
Q 027904 175 KIKTVPLFHFYKNGALVEAFPT-RDKERIDAAILKYTST 212 (217)
Q Consensus 175 ~I~~~Pt~~~~k~G~~v~~~~g-~~~~~l~~~i~~~~~~ 212 (217)
+|.++||+++|++|+.+.+.+| .+.++|.+|+.+....
T Consensus 103 ~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 103 AIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999888754 8999999999988643
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.83 E-value=1.5e-19 Score=129.13 Aligned_cols=100 Identities=28% Similarity=0.533 Sum_probs=86.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch--hHHHHHHc
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE--QSEVAERL 174 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~--~~~l~~~~ 174 (217)
+.++ +.++|++.+.. +++++|+||++||++|+.+.|.+.++++.+.. ...+.++.+|+ +. +..+++++
T Consensus 2 ~~~l-~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~ 71 (104)
T cd02997 2 VVHL-TDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDC----TKPEHDALKEEY 71 (104)
T ss_pred eEEe-chHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEEC----CCCccHHHHHhC
Confidence 3455 67799999876 67999999999999999999999999998863 23689999999 55 88999999
Q ss_pred CCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHH
Q 027904 175 KIKTVPLFHFYKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i 206 (217)
+|.++||+++|++|+.+..+ |..+.+.|.+||
T Consensus 72 ~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 72 NVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999999999999988777 668899888775
No 31
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.2e-20 Score=163.27 Aligned_cols=113 Identities=23% Similarity=0.423 Sum_probs=103.1
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+.|..+ +.++|++.|.. +..++|.||||||++|+.+.|.+++.+..+....+.+.+++||+ .++.++|.+
T Consensus 24 ~~~Vl~L-t~dnf~~~i~~----~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa----t~~~~~~~~ 94 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKETING----HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA----TEESDLASK 94 (493)
T ss_pred ccceEEE-ecccHHHHhcc----CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec----chhhhhHhh
Confidence 3455555 88999999987 89999999999999999999999999999988778899999999 788999999
Q ss_pred cCCCCCcEEEEEECCEE-EEEeCCCCHHHHHHHHHHhccCCCC
Q 027904 174 LKIKTVPLFHFYKNGAL-VEAFPTRDKERIDAAILKYTSTTSN 215 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~-v~~~~g~~~~~l~~~i~~~~~~~~~ 215 (217)
|+|.++||+.+|+||+. ..+.|++..+.|..|+.+..+|++.
T Consensus 95 y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASK 137 (493)
T ss_pred hcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCCce
Confidence 99999999999999996 6666999999999999999999864
No 32
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.82 E-value=1.5e-19 Score=130.25 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=82.7
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCC--ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTS--CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..+|++.++. +..++|.||++| |++|+.+.|.|+++++++.+ .+.|++||+ +++++++.+|+|.++
T Consensus 16 ~~~~~~~~~~~----~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdi----d~~~~la~~f~V~sI 84 (111)
T cd02965 16 DAATLDDWLAA----GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGR----ADEQALAARFGVLRT 84 (111)
T ss_pred ccccHHHHHhC----CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEEC----CCCHHHHHHcCCCcC
Confidence 78899988844 899999999997 99999999999999999987 589999999 888999999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHH
Q 027904 180 PLFHFYKNGALVEAF-PTRDKERID 203 (217)
Q Consensus 180 Pt~~~~k~G~~v~~~-~g~~~~~l~ 203 (217)
||+++|++|+.+.++ |..+.+++.
T Consensus 85 PTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCEEEEEEeCccCHHHHh
Confidence 999999999999998 557777765
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.82 E-value=4.6e-19 Score=135.45 Aligned_cols=92 Identities=23% Similarity=0.383 Sum_probs=80.6
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
..+.++ +.++|++.+... .+++++|+|||+||++|+.+.|.|+++++++.+ .++.|++||+ +++++++++|
T Consensus 28 ~~v~~l-~~~~f~~~l~~~--~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDv----d~~~~la~~~ 98 (152)
T cd02962 28 EHIKYF-TPKTLEEELERD--KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDI----GRFPNVAEKF 98 (152)
T ss_pred CccEEc-CHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEEC----CCCHHHHHHc
Confidence 355566 678999988653 267999999999999999999999999998864 2599999999 8899999999
Q ss_pred CCCC------CcEEEEEECCEEEEEeC
Q 027904 175 KIKT------VPLFHFYKNGALVEAFP 195 (217)
Q Consensus 175 ~I~~------~Pt~~~~k~G~~v~~~~ 195 (217)
+|.+ +||+++|++|+.+.++.
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v~r~~ 125 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEVARRP 125 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEEEEEe
Confidence 9988 99999999999999884
No 34
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.81 E-value=2.5e-19 Score=128.66 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.++|+++. + +++++|.|||+||++|+.+.|.|+++++.+.+....+.++.+|+ +..+.++++|+|.++||+
T Consensus 6 ~~~~~~~~-~----~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 6 DDSFKDVR-K----EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDA----TAYSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhhhhc-c----CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEEC----ccCHhHHhhcCCccccEE
Confidence 36677642 2 67999999999999999999999999998864334699999999 888899999999999999
Q ss_pred EEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027904 183 HFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~k~G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
++|++|......|..+.+.|.+|+++.
T Consensus 77 ~l~~~~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCCceeecCCCCHHHHHHHHHhh
Confidence 999888654444778999999999864
No 35
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.81 E-value=6e-19 Score=138.20 Aligned_cols=106 Identities=21% Similarity=0.401 Sum_probs=90.3
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|++.++|.+.+..+. .+.+|+|+||++||++|+.+.|.|.+++.+++. +.|++||+ +.. .++.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~----d~~-~l~~~ 130 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRA----SAT-GASDE 130 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcC-CCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEec----cch-hhHHh
Confidence 678889977799999987632 135999999999999999999999999999865 99999999 666 89999
Q ss_pred cCCCCCcEEEEEECCEEEEEeC--------CCCHHHHHHHHHHh
Q 027904 174 LKIKTVPLFHFYKNGALVEAFP--------TRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~~--------g~~~~~l~~~i~~~ 209 (217)
|+|.++||+++|++|+.+.++. ..+.+.|+.+|.++
T Consensus 131 f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 131 FDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999999999999999998872 24567787777653
No 36
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.81 E-value=5.9e-19 Score=125.91 Aligned_cols=99 Identities=24% Similarity=0.394 Sum_probs=85.5
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+.++ +.++|++.+... +++++|+||++||++|+.+.|.|.++++.+.+ .+.|+.+|+ +++.+++++|+|
T Consensus 2 v~~l-~~~~~~~~i~~~---~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~----~~~~~~~~~~~i 70 (103)
T cd03001 2 VVEL-TDSNFDKKVLNS---DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDA----DVHQSLAQQYGV 70 (103)
T ss_pred eEEc-CHHhHHHHHhcC---CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEEC----cchHHHHHHCCC
Confidence 3445 789999998762 67799999999999999999999999998876 599999999 889999999999
Q ss_pred CCCcEEEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027904 177 KTVPLFHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~k~G-~~v~~~-~g~~~~~l~~~i 206 (217)
.++|++++|++| +....+ |+.+.++|.+|+
T Consensus 71 ~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 71 RGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 999999999988 333333 889999999886
No 37
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.81 E-value=5.1e-19 Score=134.19 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
..+|++++.. ++++||+|||+||++|+.+.|.+.++++.+.+ .+.|+.||+.+ +....++++|+|.++||+
T Consensus 10 ~~~~~~a~~~----gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~--~~~~~~~~~~~V~~iPt~ 80 (142)
T cd02950 10 STPPEVALSN----GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDN--PKWLPEIDRYRVDGIPHF 80 (142)
T ss_pred cCCHHHHHhC----CCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCC--cccHHHHHHcCCCCCCEE
Confidence 4556666654 89999999999999999999999999999876 57888888821 334688999999999999
Q ss_pred EEEE-CCEEEEEe-CCCCHHHHHHHHHHhccC
Q 027904 183 HFYK-NGALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 183 ~~~k-~G~~v~~~-~g~~~~~l~~~i~~~~~~ 212 (217)
+||+ +|+++.++ |....++|.++|++++..
T Consensus 81 v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 81 VFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 9995 89999988 557788999999998743
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.81 E-value=9.4e-19 Score=123.93 Aligned_cols=99 Identities=32% Similarity=0.518 Sum_probs=88.3
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|.+.+.. .+++++|+||++||++|+.+.+.+.++++.+.+ ++.|+.+|+ +.+..++++|+|.++|+
T Consensus 2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~~P~ 71 (101)
T TIGR01068 2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNV----DENPDIAAKYGIRSIPT 71 (101)
T ss_pred CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEEC----CCCHHHHHHcCCCcCCE
Confidence 56788888876 367999999999999999999999999988875 599999999 88899999999999999
Q ss_pred EEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 182 FHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 182 ~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
+++|++|+.+... |..+.+.|..+|++.+
T Consensus 72 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 72 LLLFKNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EEEEeCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 9999999998887 5578899999998753
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.81 E-value=6e-19 Score=125.37 Aligned_cols=100 Identities=24% Similarity=0.450 Sum_probs=87.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|++.+.+ +++++|.||++||++|+.+.+.|++++..+.+. .++.++.+|+ +.+..++++|+|.++|+
T Consensus 2 ~~~~~~~~~~~----~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~----~~~~~~~~~~~i~~~P~ 72 (102)
T TIGR01126 2 TASNFDDIVLS----NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDA----TAEKDLASRFGVSGFPT 72 (102)
T ss_pred chhhHHHHhcc----CCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEc----cchHHHHHhCCCCcCCE
Confidence 57889998864 899999999999999999999999999988752 2599999999 89999999999999999
Q ss_pred EEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 182 FHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 182 ~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
+++|++|+.+..+ |..+.++|..||++++
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 73 IKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred EEEecCCCcceeecCCCCHHHHHHHHHhcC
Confidence 9999877644444 6789999999998863
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.80 E-value=3.7e-19 Score=127.70 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
++|++++.. +++++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.||+..+.+...+++++|+|.++|
T Consensus 2 ~~~~~~~~~----~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~P 74 (104)
T cd02953 2 AALAQALAQ----GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPP 74 (104)
T ss_pred HHHHHHHHc----CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCC
Confidence 567777765 89999999999999999999987 578777764 59999999943323368999999999999
Q ss_pred EEEEEE--CCEEEEEe-CCCCHHHHHHHHH
Q 027904 181 LFHFYK--NGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 181 t~~~~k--~G~~v~~~-~g~~~~~l~~~i~ 207 (217)
|++||+ +|+.+.++ |..+.++|.++|+
T Consensus 75 ti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 75 TYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 999998 79988887 6689999988873
No 41
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.79 E-value=1.6e-18 Score=125.63 Aligned_cols=103 Identities=21% Similarity=0.359 Sum_probs=82.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-hHHHHH-H
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAE-R 173 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~-~~~l~~-~ 173 (217)
.|+++ +.++|+.++... ..+++++|.||++||++|+.+.|.|.++++.+.+ .++.++.||+ +. ...++. .
T Consensus 2 ~v~~~-~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~----d~~~~~~~~~~ 73 (109)
T cd02993 2 AVVTL-SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNA----DGEQREFAKEE 73 (109)
T ss_pred cceec-cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEEC----CccchhhHHhh
Confidence 45566 778999888532 2478999999999999999999999999999874 2599999999 65 567776 5
Q ss_pred cCCCCCcEEEEEECC-EEEEEe-CC-CCHHHHHHHH
Q 027904 174 LKIKTVPLFHFYKNG-ALVEAF-PT-RDKERIDAAI 206 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G-~~v~~~-~g-~~~~~l~~~i 206 (217)
++|.++||+++|++| .....+ |. ++.+.|..||
T Consensus 74 ~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 74 LQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999999999754 444444 53 7999998875
No 42
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.79 E-value=3.3e-18 Score=121.31 Aligned_cols=92 Identities=24% Similarity=0.448 Sum_probs=81.7
Q ss_pred HHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEE
Q 027904 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 106 f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
++..+.+ .+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|+ +++++++.+++|.++|++++|
T Consensus 5 ~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~----d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 5 LRKLYHE---SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDI----DEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred HHHHHHh---CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEEC----CCCHHHHHHCCCeeccEEEEE
Confidence 4555555 489999999999999999999999999999875 599999999 888999999999999999999
Q ss_pred ECCEEEEEe-CCCCHHHHHHHHH
Q 027904 186 KNGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 186 k~G~~v~~~-~g~~~~~l~~~i~ 207 (217)
++|+.+.++ +..+.++|.++|+
T Consensus 75 ~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 75 KDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ECCeEEEEEeCCccHHHHHHhhC
Confidence 999999998 5578888888873
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=2.5e-18 Score=122.72 Aligned_cols=100 Identities=21% Similarity=0.387 Sum_probs=83.7
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
|.++ +.++|++.+... +++++|+||++||++|+.+.|.|.++++.+.+ ...+.++.+|+ +.+ +++..+++
T Consensus 2 v~~l-~~~~f~~~i~~~---~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~-~~~~~~~~ 71 (104)
T cd02995 2 VKVV-VGKNFDEVVLDS---DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDA----TAN-DVPSEFVV 71 (104)
T ss_pred eEEE-chhhhHHHHhCC---CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeC----cch-hhhhhccC
Confidence 3445 788999998873 68999999999999999999999999998865 34699999999 665 68889999
Q ss_pred CCCcEEEEEECCE--EEEEe-CCCCHHHHHHHH
Q 027904 177 KTVPLFHFYKNGA--LVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 177 ~~~Pt~~~~k~G~--~v~~~-~g~~~~~l~~~i 206 (217)
.++||+++|++|+ ...++ |..+.+.|.+||
T Consensus 72 ~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999999998776 34444 778999998875
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=2.4e-18 Score=122.89 Aligned_cols=101 Identities=28% Similarity=0.510 Sum_probs=84.4
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-hHHHHHHcC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-QSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~-~~~l~~~~~ 175 (217)
+.++ +.++|++.+.. .+++++|+||++||++|+.+.|.+.++++.+.. ...+.++.+|+ +. ++.++++|+
T Consensus 2 ~~~l-~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~----~~~~~~~~~~~~ 72 (105)
T cd02998 2 VVEL-TDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDA----DEANKDLAKKYG 72 (105)
T ss_pred eEEc-chhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEEC----CCcchhhHHhCC
Confidence 3455 66899987765 267999999999999999999999999999862 23699999999 77 899999999
Q ss_pred CCCCcEEEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027904 176 IKTVPLFHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 176 I~~~Pt~~~~k~G-~~v~~~-~g~~~~~l~~~i 206 (217)
|.++|++++|++| +....+ |+.+.++|.+||
T Consensus 73 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999999999866 444445 668999998875
No 45
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=2.3e-18 Score=125.87 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=75.7
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.++++ +.++|++.+... +++++|+||++||++|+.+.|.|+++++.+.+....+.|+.+|+.. +.+.+++++|+
T Consensus 2 ~v~~l-~~~~f~~~i~~~---~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~~ 75 (114)
T cd02992 2 PVIVL-DAASFNSALLGS---PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--EENVALCRDFG 75 (114)
T ss_pred CeEEC-CHHhHHHHHhcC---CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--hhhHHHHHhCC
Confidence 35556 789999999873 6899999999999999999999999999886533458999999822 35678999999
Q ss_pred CCCCcEEEEEECCEEE
Q 027904 176 IKTVPLFHFYKNGALV 191 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v 191 (217)
|.++||+++|++|...
T Consensus 76 i~~~Pt~~lf~~~~~~ 91 (114)
T cd02992 76 VTGYPTLRYFPPFSKE 91 (114)
T ss_pred CCCCCEEEEECCCCcc
Confidence 9999999999988743
No 46
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=7.9e-18 Score=122.46 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=81.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEEC--CCCh---hhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHH
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYR--TSCG---SCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEV 170 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a--~wC~---~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~-~~~~l 170 (217)
++.+ +.++|++.|.. ++.+||.||| |||+ +|+.+.|.+.+.+. .+.+++||+.+..+ ++.+|
T Consensus 3 ~v~L-~~~nF~~~v~~----~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L 70 (116)
T cd03007 3 CVDL-DTVTFYKVIPK----FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMEL 70 (116)
T ss_pred eeEC-ChhhHHHHHhc----CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHH
Confidence 3444 88999999987 7999999999 8898 77777776665543 38999999944222 46789
Q ss_pred HHHcCCC--CCcEEEEEECCE---EEEEeCC-CCHHHHHHHHHHh
Q 027904 171 AERLKIK--TVPLFHFYKNGA---LVEAFPT-RDKERIDAAILKY 209 (217)
Q Consensus 171 ~~~~~I~--~~Pt~~~~k~G~---~v~~~~g-~~~~~l~~~i~~~ 209 (217)
|++|+|. ++||+.+|++|. .+.+-|+ ++.+.|.+||.++
T Consensus 71 ~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 71 GERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999 999999999884 3445575 9999999999875
No 47
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=1.2e-17 Score=149.55 Aligned_cols=110 Identities=25% Similarity=0.447 Sum_probs=97.4
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.+..+ +.++|++++.+ ++.++|+|||+||++|+.+.|.|.++++.+.....++.|+.||| +.+.+++++|+
T Consensus 33 ~v~~l-~~~~f~~~i~~----~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~----~~~~~l~~~~~ 103 (477)
T PTZ00102 33 HVTVL-TDSTFDKFITE----NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDA----TEEMELAQEFG 103 (477)
T ss_pred CcEEc-chhhHHHHHhc----CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEEC----CCCHHHHHhcC
Confidence 45555 88999999976 78999999999999999999999999988765455799999999 88899999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027904 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~~ 214 (217)
|.++||+++|++|+.+.+.|+++.+.|.+|+.++++++.
T Consensus 104 i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 104 VRGYPTIKFFNKGNPVNYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCcccEEEEEECCceEEecCCCCHHHHHHHHHHhhCCCc
Confidence 999999999999988844478999999999999988764
No 48
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.5e-17 Score=147.94 Aligned_cols=109 Identities=22% Similarity=0.452 Sum_probs=96.1
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+..+ +.++|+.++.. +++++|+|||+||++|+.+.|.+.++++.+.....++.|+.||| +.+.++|++|+|
T Consensus 3 v~~l-~~~~~~~~i~~----~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~----~~~~~l~~~~~i 73 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKS----HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDA----TEEKDLAQKYGV 73 (462)
T ss_pred ceEC-CHHHHHHHHhc----CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEEC----CCcHHHHHhCCC
Confidence 4455 78999999976 78999999999999999999999999998876555699999999 888999999999
Q ss_pred CCCcEEEEEECCEE-EEEe-CCCCHHHHHHHHHHhccCCC
Q 027904 177 KTVPLFHFYKNGAL-VEAF-PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~-v~~~-~g~~~~~l~~~i~~~~~~~~ 214 (217)
.++||+++|++|+. +..+ |..+.+.|.+|+.+.+++..
T Consensus 74 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 74 SGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999999987 4454 77999999999999987654
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.75 E-value=1.5e-17 Score=132.62 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+.++|++.+.. +.+.++++|||+||++|+.|.|.+.+++++++. +.|+.||. + |+|.++|
T Consensus 4 ~~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~----d--------~~V~~vP 64 (204)
T PTZ00062 4 IKKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNL----A--------DANNEYG 64 (204)
T ss_pred CCHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEcc----c--------cCcccce
Confidence 578999999875 237789999999999999999999999999876 99999998 5 9999999
Q ss_pred EEEEEECCEEEEEeCCCCHHHHHHHHHHhccCC
Q 027904 181 LFHFYKNGALVEAFPTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 181 t~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~ 213 (217)
||+||++|+.++++.|.++.+|..++.++....
T Consensus 65 tfv~~~~g~~i~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 65 VFEFYQNSQLINSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEEEEECCEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999988654
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.75 E-value=1.4e-17 Score=117.28 Aligned_cols=96 Identities=23% Similarity=0.455 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
+.++|.+.+.+ +++++|+||++||++|+.+.+.|.++++.+.. ...+.|+.+|+ +.+..++++|+|.++||
T Consensus 4 ~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~----~~~~~~~~~~~i~~~Pt 74 (101)
T cd02961 4 TDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDC----TANNDLCSEYGVRGYPT 74 (101)
T ss_pred cHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeec----cchHHHHHhCCCCCCCE
Confidence 67899999987 56999999999999999999999999998841 22699999999 88899999999999999
Q ss_pred EEEEECC-EEEEEe-CCCCHHHHHHHH
Q 027904 182 FHFYKNG-ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 182 ~~~~k~G-~~v~~~-~g~~~~~l~~~i 206 (217)
+++|++| +...++ +..+.++|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 75 IKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 9999866 666666 667888888774
No 51
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.75 E-value=1.5e-17 Score=123.22 Aligned_cols=102 Identities=11% Similarity=0.206 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhcCC-CeEEEEEECCCChhhHHhHHHHH---HHHHHhCCCCCCEEEEEEEccCCc---------chhHHH
Q 027904 104 AEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVIDEY---------DEQSEV 170 (217)
Q Consensus 104 ~~f~~~l~~a~~~~-k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~v~~~~Vd~~d~~---------~~~~~l 170 (217)
+++++++++ + ++++|+||++||++|+.+.+.+. .+.+.+.+ ++.++.+|+.++. ....++
T Consensus 4 ~~~~~a~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 4 EDLAEAAAD----GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHHc----CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHH
Confidence 445555544 8 99999999999999999999875 55555544 5889999983210 124789
Q ss_pred HHHcCCCCCcEEEEEE-C-CEEEEEe-CCCCHHHHHHHHHHhccC
Q 027904 171 AERLKIKTVPLFHFYK-N-GALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~k-~-G~~v~~~-~g~~~~~l~~~i~~~~~~ 212 (217)
+.+|+|.++||++||+ + |+.+.++ |..+.+.+.++|+..+..
T Consensus 77 ~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred HHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999997 4 6999888 557889999999887653
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.75 E-value=4.1e-17 Score=120.57 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=79.3
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-------chhHH
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------DEQSE 169 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~-------~~~~~ 169 (217)
...+ +.++|.+.++. ++.++|+||++||++|+.+.|.|.+++++. ++.++.||+..+. ++..+
T Consensus 8 ~~~i-t~~~~~~~i~~----~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 8 LEVT-TVVRALEALDK----KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred ceec-CHHHHHHHHHc----CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHH
Confidence 3444 78899999986 889999999999999999999999999983 3567777773110 12346
Q ss_pred HHHHcCC----CCCcEEEEEECCEEEEEe-C-CCCHHHHHHHHH
Q 027904 170 VAERLKI----KTVPLFHFYKNGALVEAF-P-TRDKERIDAAIL 207 (217)
Q Consensus 170 l~~~~~I----~~~Pt~~~~k~G~~v~~~-~-g~~~~~l~~~i~ 207 (217)
+.++|++ .++||+++|++|+.+.+. | ..+.++|.+++.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 6777664 459999999999999998 4 356899988864
No 53
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.75 E-value=3.5e-17 Score=119.40 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE--E
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE--A 193 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~--~ 193 (217)
++..++|+||++||++|+.+.|.+++++..++ .+.|..+|+ ++.++++.+|+|.++||+++|++|.... +
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~----~i~~~~vd~----d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD----KLKLEIYDF----DEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC----ceEEEEEeC----CcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 37789999999999999999999999998763 499999999 8889999999999999999999875544 3
Q ss_pred e-CCCCHHHHHHHHHHhcc
Q 027904 194 F-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 194 ~-~g~~~~~l~~~i~~~~~ 211 (217)
+ |-.+..+|.++|+..+.
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 4 55677899999988764
No 54
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.74 E-value=4.6e-17 Score=129.24 Aligned_cols=103 Identities=20% Similarity=0.383 Sum_probs=86.1
Q ss_pred CCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027904 93 PVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 93 ~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~ 172 (217)
..+.+.++ +.++|...+..+. .+.+|||+||++||++|+.|.|.|.+++.+|.. +.|++||+ +.. ..
T Consensus 80 ~~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~a----d~~---~~ 146 (192)
T cd02988 80 KFGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIS----TQC---IP 146 (192)
T ss_pred CCCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEh----HHh---Hh
Confidence 35788888 7788888776542 246999999999999999999999999999875 99999999 543 68
Q ss_pred HcCCCCCcEEEEEECCEEEEEe-C-------CCCHHHHHHHHHH
Q 027904 173 RLKIKTVPLFHFYKNGALVEAF-P-------TRDKERIDAAILK 208 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k~G~~v~~~-~-------g~~~~~l~~~i~~ 208 (217)
+|+|.++||+++|++|+.+.++ | ..+.+.|+.+|.+
T Consensus 147 ~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 147 NYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred hCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999999887 2 2567788877764
No 55
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.73 E-value=8.4e-18 Score=138.04 Aligned_cols=105 Identities=19% Similarity=0.329 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEE
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~ 183 (217)
+++++.....+ ++..|+|+||||||++|+++.|.|.++.-.+.+....+.+.++|+ ...+.++.+++|.+|||+.
T Consensus 31 eDLddkFkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDa----T~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 31 EDLDDKFKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDA----TRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhHHhhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccc----ccchhhHhhhccCCCceEE
Confidence 45555554443 478999999999999999999999999999888888899999999 8999999999999999999
Q ss_pred EEECCEEEEEeCCCCHHHHHHHHHHhccCC
Q 027904 184 FYKNGALVEAFPTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 184 ~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~ 213 (217)
||++|-.+.+.||+..+.|.+|..+..++-
T Consensus 106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~ai 135 (468)
T KOG4277|consen 106 FFKGDHAIDYRGGREKDAIIEFAHRCAAAI 135 (468)
T ss_pred EecCCeeeecCCCccHHHHHHHHHhcccce
Confidence 999999999999999999999998876653
No 56
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.72 E-value=5.3e-17 Score=118.98 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEEC-------CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHH
Q 027904 100 FKTDAEFFKILEKSKETGSLVVVDFYR-------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSE 169 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---~~~~~~ 169 (217)
+.+.++|.+.+... .+++++|+||| +||++|+.+.|.+++++.++++ ++.|++||+.+. .+.+.+
T Consensus 6 ~~~~~~f~~~i~~~--~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 6 VRGYEEFLKLLKSH--EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred ccCHHHHHHHHHhc--CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchh
Confidence 46889999999863 36899999999 9999999999999999999875 599999999321 123568
Q ss_pred HHHHcCCC-CCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027904 170 VAERLKIK-TVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 170 l~~~~~I~-~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i 206 (217)
+...++|. ++||+++|++|+.+....-.+.+.+..|+
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 99999998 99999999988766555556777776665
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.72 E-value=1.3e-16 Score=140.93 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=92.4
Q ss_pred CCCCCCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hh
Q 027904 89 DDLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQ 167 (217)
Q Consensus 89 ~~~~~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~-~~ 167 (217)
..+...+.++.+ +.++|++++... ..++++||+|||+||++|+.|.|.|+++++.+.+. ++.|+++|+ + .+
T Consensus 339 ~dl~~~~~Vv~L-t~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~----d~~~ 410 (457)
T PLN02309 339 ADIFNSQNVVAL-SRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRA----DGDQ 410 (457)
T ss_pred ccccCCCCcEEC-CHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEEC----CCcc
Confidence 345555677777 889999998642 24899999999999999999999999999998642 599999999 6 66
Q ss_pred HHHHH-HcCCCCCcEEEEEECCE--EEEEeC-CCCHHHHHHHHHHh
Q 027904 168 SEVAE-RLKIKTVPLFHFYKNGA--LVEAFP-TRDKERIDAAILKY 209 (217)
Q Consensus 168 ~~l~~-~~~I~~~Pt~~~~k~G~--~v~~~~-g~~~~~l~~~i~~~ 209 (217)
..++. +|+|.++||++||++|. .+.+.+ .++.+.|..||+..
T Consensus 411 ~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 411 KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 78886 69999999999998664 344444 58999999999864
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.71 E-value=1.7e-16 Score=109.57 Aligned_cols=90 Identities=34% Similarity=0.627 Sum_probs=79.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEE
Q 027904 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~ 184 (217)
+|++++.. +++++|.||++||++|+.+.+.+.++.+... ++.++.+|+ +....++++|++.++|++++
T Consensus 2 ~~~~~~~~----~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~i~~----~~~~~~~~~~~v~~~P~~~~ 69 (93)
T cd02947 2 EFEELIKS----AKPVVVDFWAPWCGPCKAIAPVLEELAEEYP----KVKFVKVDV----DENPELAEEYGVRSIPTFLF 69 (93)
T ss_pred chHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEEC----CCChhHHHhcCcccccEEEE
Confidence 56777766 5899999999999999999999999988833 599999999 78889999999999999999
Q ss_pred EECCEEEEEe-CCCCHHHHHHHH
Q 027904 185 YKNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 185 ~k~G~~v~~~-~g~~~~~l~~~i 206 (217)
|++|+.+..+ +..+.+.|.++|
T Consensus 70 ~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 70 FKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred EECCEEEEEEecCCCHHHHHHHh
Confidence 9999988887 556778888876
No 59
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=1.7e-16 Score=140.28 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=89.3
Q ss_pred CCCCCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchh-H
Q 027904 90 DLCPVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQ-S 168 (217)
Q Consensus 90 ~~~~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~-~ 168 (217)
.+...+.|+++ +.++|++.+... ..++++||+|||+||++|+.|.|.|+++++++.+. ++.|+.||+ +.+ .
T Consensus 346 dl~~~~~Vv~L-~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdv----D~~~~ 417 (463)
T TIGR00424 346 DIFDSNNVVSL-SRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRA----DGDQK 417 (463)
T ss_pred cccCCCCeEEC-CHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEEC----CCCcc
Confidence 45555677777 888999998621 24899999999999999999999999999998652 488999999 543 2
Q ss_pred HH-HHHcCCCCCcEEEEEECCE--EEEEeC-CCCHHHHHHHHHHh
Q 027904 169 EV-AERLKIKTVPLFHFYKNGA--LVEAFP-TRDKERIDAAILKY 209 (217)
Q Consensus 169 ~l-~~~~~I~~~Pt~~~~k~G~--~v~~~~-g~~~~~l~~~i~~~ 209 (217)
.+ +++|+|.++||++||++|. .+.+.+ .++.+.|..||+..
T Consensus 418 ~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 418 EFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 34 5789999999999999874 344433 59999999999753
No 60
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.69 E-value=2.1e-16 Score=144.27 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=94.5
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~ 172 (217)
..+++.+.+++++.+++++.++|+++|+|||+||++|+.+.+.+ .++.+.+++ +.++++|++++.+++.++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLK 528 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHH
Confidence 45677899999999998887899999999999999999998875 566666654 89999999766566789999
Q ss_pred HcCCCCCcEEEEEE-CCEEE--EEe-CCCCHHHHHHHHHHhc
Q 027904 173 RLKIKTVPLFHFYK-NGALV--EAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k-~G~~v--~~~-~g~~~~~l~~~i~~~~ 210 (217)
+|+|.++||+++|+ +|+++ .++ |..+.+++.+++++..
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999999999996 89885 455 5689999999998754
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.68 E-value=3.8e-16 Score=139.87 Aligned_cols=112 Identities=22% Similarity=0.332 Sum_probs=94.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.+..+ +.++|++.+.. .+++++|+|||+||++|+.+.|.|+++++.+.+ ...+.++.+|+ +.+..++.+++
T Consensus 358 ~v~~l-~~~~f~~~v~~---~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~----~~~~~~~~~~~ 428 (477)
T PTZ00102 358 PVKVV-VGNTFEEIVFK---SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNG----TANETPLEEFS 428 (477)
T ss_pred CeEEe-cccchHHHHhc---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEEC----CCCccchhcCC
Confidence 45556 78999998765 389999999999999999999999999998865 34699999999 77788899999
Q ss_pred CCCCcEEEEEECCEEE-EEe-CCCCHHHHHHHHHHhccCCCCC
Q 027904 176 IKTVPLFHFYKNGALV-EAF-PTRDKERIDAAILKYTSTTSND 216 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v-~~~-~g~~~~~l~~~i~~~~~~~~~~ 216 (217)
+.++||+++|++|..+ ..+ |..+.+.|.+||+++......|
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~ 471 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPFED 471 (477)
T ss_pred CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCccc
Confidence 9999999999877554 344 7799999999999998754443
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=7.2e-17 Score=118.46 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEE
Q 027904 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLF 182 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~--~Pt~ 182 (217)
+++++++.++.++++++|+|||+||++|+.+.|.+.+....... ...|+.||+.. +. ..+..+|++.+ +||+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~---~~~fv~v~vd~--~~-~~~~~~~~~~g~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL---SHNFVMVNLED--DE-EPKDEEFSPDGGYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh---cCcEEEEEecC--CC-CchhhhcccCCCccceE
Confidence 58888888888899999999999999999999999997775432 23455666621 21 23456899987 9999
Q ss_pred EEEE-CCEEEEEe----CCCCHHHHHHHHHHh
Q 027904 183 HFYK-NGALVEAF----PTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~k-~G~~v~~~----~g~~~~~l~~~i~~~ 209 (217)
+||. +|+++.++ ++.+.+.+...|...
T Consensus 81 ~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 81 LFLDPSGDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred EEECCCCCCchhhccCCCCccccccCCCHHHH
Confidence 9996 99988764 556666665555544
No 63
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.63 E-value=4.5e-15 Score=105.88 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=78.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC--CCcEEEEEEC--CEEEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--TVPLFHFYKN--GALVE 192 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~--~~Pt~~~~k~--G~~v~ 192 (217)
++++++.||++||++|..+.|.+.++++++.+ .+.|+.||+ ++...+++.|+|. ++|+++++++ |+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~----~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~ 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDA----DDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEch----HhhHHHHHHcCCChhhCCEEEEEecccccccC
Confidence 68999999999999999999999999999987 699999999 8889999999999 9999999987 76665
Q ss_pred EeCC-CCHHHHHHHHHHhc
Q 027904 193 AFPT-RDKERIDAAILKYT 210 (217)
Q Consensus 193 ~~~g-~~~~~l~~~i~~~~ 210 (217)
..++ .+.+.|.+||.+++
T Consensus 85 ~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 85 MPEEELTAESLEEFVEDFL 103 (103)
T ss_pred CCccccCHHHHHHHHHhhC
Confidence 5555 48999999998753
No 64
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.62 E-value=7.3e-16 Score=126.67 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=92.8
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCC--CCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQE--APVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~--~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+.++++.++.. +.+|+|.|||+||+..+.+.|.|++.+..+.+.. .+++|++||| +.+..|+.+|.|..|
T Consensus 2 t~~N~~~il~s----~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDc----d~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 2 TSENIDSILDS----NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDC----DKEDDIADKYHINKY 73 (375)
T ss_pred ccccHHHhhcc----ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEccc----chhhHHhhhhccccC
Confidence 45788888887 7899999999999999999999999988765433 3799999999 999999999999999
Q ss_pred cEEEEEECCEEEEEe--CCCCHHHHHHHHHHhccCCC
Q 027904 180 PLFHFYKNGALVEAF--PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 180 Pt~~~~k~G~~v~~~--~g~~~~~l~~~i~~~~~~~~ 214 (217)
||+.+|+||....+- |.++.+.|.+||++.++.+.
T Consensus 74 PTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 74 PTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence 999999999988743 77999999999999986543
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.61 E-value=9.5e-15 Score=99.86 Aligned_cols=81 Identities=27% Similarity=0.301 Sum_probs=69.3
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCH
Q 027904 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDK 199 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~ 199 (217)
.+..||++||++|+.+.|.++++++.+.. .+.++.||+ ++.++++++|++.++||+++ +|+. ...|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~----~~~~~~~~~~~v~~vPt~~~--~g~~-~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINV----MENPQKAMEYGIMAVPAIVI--NGDV-EFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeC----ccCHHHHHHcCCccCCEEEE--CCEE-EEecCCCH
Confidence 35679999999999999999999998865 589999999 88889999999999999986 7763 33366789
Q ss_pred HHHHHHHHHhc
Q 027904 200 ERIDAAILKYT 210 (217)
Q Consensus 200 ~~l~~~i~~~~ 210 (217)
++|.++|++.+
T Consensus 72 ~~l~~~l~~~~ 82 (82)
T TIGR00411 72 EELVEAIKKRL 82 (82)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 66
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.9e-16 Score=135.06 Aligned_cols=104 Identities=25% Similarity=0.404 Sum_probs=86.6
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
|..+ -.++|++++... +|-|+|.||||||+||+++.|.|++|++.+.+ ..++.|+++|.+ .+. .....+
T Consensus 368 Vkvv-Vgknfd~iv~de---~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaT----aNd--~~~~~~ 436 (493)
T KOG0190|consen 368 VKVV-VGKNFDDIVLDE---GKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDAT----AND--VPSLKV 436 (493)
T ss_pred eEEE-eecCHHHHhhcc---ccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccc----ccc--Cccccc
Confidence 4444 679999999873 89999999999999999999999999999998 778999999993 322 224567
Q ss_pred CCCcEEEEEECCE---EEEEeCCCCHHHHHHHHHHhcc
Q 027904 177 KTVPLFHFYKNGA---LVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 177 ~~~Pt~~~~k~G~---~v~~~~g~~~~~l~~~i~~~~~ 211 (217)
.++||+++|+.|. ++.+-|.++.++|..|+.+...
T Consensus 437 ~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 437 DGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 7899999998554 5555688999999999998875
No 67
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.59 E-value=1.1e-14 Score=107.73 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=60.7
Q ss_pred HHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHH--------HcCCCC
Q 027904 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE--------RLKIKT 178 (217)
Q Consensus 110 l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~--------~~~I~~ 178 (217)
++.+++++|+++|+|||+||++|+.|.+. |. ++.+.+.. ++.++++|. ++.+++.+ .|++.+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~----~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDR----EERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeC----CcCcHHHHHHHHHHHHhcCCCC
Confidence 34444459999999999999999999874 32 45555544 599999999 55555543 368999
Q ss_pred CcEEEEEE-CCEEEEEeCC
Q 027904 179 VPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 179 ~Pt~~~~k-~G~~v~~~~g 196 (217)
+|+++|+. +|+++...++
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred CCEEEEECCCCCEEeeeee
Confidence 99999995 8999977643
No 68
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.57 E-value=1.4e-14 Score=128.76 Aligned_cols=110 Identities=23% Similarity=0.348 Sum_probs=90.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.+..+ +.++|++.+.. .++.++|+|||+||++|+.+.|.++++++.+.+....+.|+.+|+ +.+. +.. ++
T Consensus 347 ~v~~l-~~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~----~~n~-~~~-~~ 416 (462)
T TIGR01130 347 PVKVL-VGKNFDEIVLD---ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDA----TAND-VPP-FE 416 (462)
T ss_pred ccEEe-eCcCHHHHhcc---CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEEC----CCCc-cCC-CC
Confidence 45555 78999998876 389999999999999999999999999999876334699999999 4432 334 99
Q ss_pred CCCCcEEEEEECCEE---EEEeCCCCHHHHHHHHHHhccCCCC
Q 027904 176 IKTVPLFHFYKNGAL---VEAFPTRDKERIDAAILKYTSTTSN 215 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~---v~~~~g~~~~~l~~~i~~~~~~~~~ 215 (217)
|.++||+++|++|.. +...|+.+.+.|.+||.++......
T Consensus 417 i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 417 VEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred ccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 999999999997755 3444789999999999999876544
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.55 E-value=7.3e-14 Score=113.00 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=73.8
Q ss_pred CCeEEEEEEC---CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE-
Q 027904 117 GSLVVVDFYR---TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE- 192 (217)
Q Consensus 117 ~k~vlV~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~- 192 (217)
+...++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|. ++.++++++|+|.++||+++|++|+.+.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~----~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~ 92 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT----PEDKEEAEKYGVERVPTTIILEEGKDGGI 92 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC----cccHHHHHHcCCCccCEEEEEeCCeeeEE
Confidence 4555666888 9999999999999999998853 1355666666 7899999999999999999999999874
Q ss_pred Ee-CCCCHHHHHHHHHHhcc
Q 027904 193 AF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 193 ~~-~g~~~~~l~~~i~~~~~ 211 (217)
++ |..+.++|..||+.+++
T Consensus 93 ~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred EEeecCCHHHHHHHHHHHHH
Confidence 66 66788899999998864
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.54 E-value=2.9e-14 Score=103.28 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=65.6
Q ss_pred hcCCCeEEEEEECCCChhhHHhHHHHHHHHH---HhCCCCCCEEEEEEEccCCc----------------chhHHHHHHc
Q 027904 114 KETGSLVVVDFYRTSCGSCKYIEQGFSKLCK---GSGDQEAPVIFLKHNVIDEY----------------DEQSEVAERL 174 (217)
Q Consensus 114 ~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~---~~~~~~~~v~~~~Vd~~d~~----------------~~~~~l~~~~ 174 (217)
+.++++++|.||++||++|+.+.+.+.+... .+.. ++.++.+++.+.. ..+.++.++|
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY 78 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc
Confidence 3468999999999999999999999886443 3332 5788888884321 1235799999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHH
Q 027904 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 175 ~I~~~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i 206 (217)
+|.++||+++++ +|+.+..+ |..++++|.++|
T Consensus 79 ~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 79 GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999996 89999877 668899998875
No 71
>PHA02125 thioredoxin-like protein
Probab=99.53 E-value=7e-14 Score=94.49 Aligned_cols=70 Identities=16% Similarity=0.385 Sum_probs=57.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCC--C
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTR--D 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~--~ 198 (217)
+++||++||++|+.+.|.|+++. +.+++||. +...+++++|+|.++||++ +|+.+.++.|. +
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~----~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDT----DEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeC----CCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCc
Confidence 78999999999999999987651 46888998 7889999999999999987 78888888664 3
Q ss_pred HHHHHHHH
Q 027904 199 KERIDAAI 206 (217)
Q Consensus 199 ~~~l~~~i 206 (217)
..+|++.|
T Consensus 66 ~~~l~~~~ 73 (75)
T PHA02125 66 VAELKEKL 73 (75)
T ss_pred HHHHHHHh
Confidence 35665543
No 72
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.49 E-value=8.4e-13 Score=96.26 Aligned_cols=103 Identities=11% Similarity=0.210 Sum_probs=84.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+|+++++.|++++|+++|+|+++||++|+.+... |. ++.+.+.. ++.++.+|+.+ .+...++..|++.++|
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~--~e~~~~~~~~~~~~~P 78 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDS--SEGQRFLQSYKVDKYP 78 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCC--ccHHHHHHHhCccCCC
Confidence 46888999998889999999999999999999764 32 34444544 58899999843 4667899999999999
Q ss_pred EEEEEE--CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 181 LFHFYK--NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 181 t~~~~k--~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
+++++. +|+.+.++ |..+++++...|++...
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 999995 69999998 66899999999988753
No 73
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.49 E-value=3.8e-13 Score=106.33 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-------------------chhHHHHHHcCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-------------------DEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~-------------------~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+...|.+.++.++ ++.++.|+..++. |....+...|+|.
T Consensus 68 gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 68 GKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 89999999999999999999999988652 3778888763321 1223456689999
Q ss_pred CCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 178 TVPLFHFYK-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 ~~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
++|+.++++ +|+++..+ |..+.++|+++|+..+.
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 999888885 99998888 56888888888887764
No 74
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-13 Score=119.64 Aligned_cols=102 Identities=25% Similarity=0.438 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
...|...+.. .+++++|+||+|||++|+.+.|.|.+++..+.+ .+.+..||+ +.+.++|.+|+|.++||+
T Consensus 36 ~~~~~~~~~~---~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~----~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 36 LDSFFDFLLK---DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDC----DEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred ccccHHHhhc---cCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCc----hhhHHHHHhcCCccCcEE
Confidence 4444444444 289999999999999999999999999999987 699999999 999999999999999999
Q ss_pred EEEECC-EEEEEeCCCCHHHHHHHHHHhccCCC
Q 027904 183 HFYKNG-ALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 183 ~~~k~G-~~v~~~~g~~~~~l~~~i~~~~~~~~ 214 (217)
.+|..| +.+...+..+.+.+..++.+.+....
T Consensus 106 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 106 KVFRPGKKPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred EEEcCCCceeeccCcccHHHHHHHHHHhhcccc
Confidence 999988 56666688999999999998887654
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.48 E-value=5.3e-13 Score=107.97 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
+..+++.||++||++|+.+.+.+++++.... .+.+..+|. +..++++.+|+|.++||++++++|+. ..|.
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~----~~~~~~~~~~~V~~vPtl~i~~~~~~--~~G~ 202 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEA----NENPDLAEKYGVMSVPKIVINKGVEE--FVGA 202 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeC----CCCHHHHHHhCCccCCEEEEecCCEE--EECC
Confidence 3445555999999999999999999988754 489999999 88999999999999999999988874 4467
Q ss_pred CCHHHHHHHHHH
Q 027904 197 RDKERIDAAILK 208 (217)
Q Consensus 197 ~~~~~l~~~i~~ 208 (217)
...++|.++|.+
T Consensus 203 ~~~~~l~~~l~~ 214 (215)
T TIGR02187 203 YPEEQFLEYILS 214 (215)
T ss_pred CCHHHHHHHHHh
Confidence 788899999875
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.47 E-value=4.5e-13 Score=101.66 Aligned_cols=78 Identities=12% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCC-----CCCEEEEEEEccCCc---------------------chhHHH
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-----EAPVIFLKHNVIDEY---------------------DEQSEV 170 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~-----~~~v~~~~Vd~~d~~---------------------~~~~~l 170 (217)
+++++|+|||+||++|+.+.|.+.++.+++.+. ..++.++.|+...+. +....+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 899999999999999999999999998876542 235888888863220 112368
Q ss_pred HHHcCCCCCcEEEEEE-CCEEEEEe
Q 027904 171 AERLKIKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~k-~G~~v~~~ 194 (217)
+++|+|.++|++++++ +|+++.+-
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEeeC
Confidence 8899999999999996 99999774
No 77
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.47 E-value=1.2e-12 Score=109.34 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=72.2
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------cchhHHHHHHcCCCCCcEEEEEEC-
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------YDEQSEVAERLKIKTVPLFHFYKN- 187 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-------~~~~~~l~~~~~I~~~Pt~~~~k~- 187 (217)
.++++||+||++||++|+.+.|.+.++++++. +.++.|++... ...+..++++|+|.++|++++++.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 47899999999999999999999999999984 45555555111 012357899999999999999984
Q ss_pred CEEEEEe--CCCCHHHHHHHHHHhccC
Q 027904 188 GALVEAF--PTRDKERIDAAILKYTST 212 (217)
Q Consensus 188 G~~v~~~--~g~~~~~l~~~i~~~~~~ 212 (217)
|+.+... |..+.++|.+.|......
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~~ 266 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAHP 266 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 6665544 568999999999877653
No 78
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=4.5e-13 Score=102.61 Aligned_cols=89 Identities=12% Similarity=0.211 Sum_probs=64.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc--------chhHHH-HHHc---CCCCCcEEEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------DEQSEV-AERL---KIKTVPLFHF 184 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~--------~~~~~l-~~~~---~I~~~Pt~~~ 184 (217)
++..+|+|||+||++|+.+.|.++++++++. +.++.|++.+.. +..... ...| ++.++||+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 5677999999999999999999999999874 445555552210 011233 3445 8899999999
Q ss_pred EE-CCEE-EEEe-CCCCHHHHHHHHHHhc
Q 027904 185 YK-NGAL-VEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 185 ~k-~G~~-v~~~-~g~~~~~l~~~i~~~~ 210 (217)
++ +|.. .... |..+.++|++.|.+.+
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 96 6665 4444 7789999999888753
No 79
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.46 E-value=6.1e-13 Score=119.31 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=73.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC------------------------CcchhHHHHH
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID------------------------EYDEQSEVAE 172 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d------------------------~~~~~~~l~~ 172 (217)
++++||+|||+||++|+.+.|.|+++.+++... ++.++.|.... ..|....+++
T Consensus 56 GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 56 DKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 899999999999999999999999999988632 46666554210 0145667899
Q ss_pred HcCCCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHH
Q 027904 173 RLKIKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILK 208 (217)
Q Consensus 173 ~~~I~~~Pt~~~~-k~G~~v~~~-~g~~~~~l~~~i~~ 208 (217)
.|+|.++|+++++ ++|+++..+ |..+.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999877 699999998 66899999999984
No 80
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.46 E-value=7.2e-13 Score=103.65 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+.+.|.++++.+. ++.++.|+..+. .|....+.+.|++.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 79999999999999999999999988653 367777775321 13334677889999
Q ss_pred CCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 178 TVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 ~~Pt~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
++|+++++ ++|+++..+ |..+.++++++|++++.
T Consensus 137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99987777 599999887 55899999999998874
No 81
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.45 E-value=1.4e-12 Score=88.28 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=57.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC-CCH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT-RDK 199 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g-~~~ 199 (217)
.|+||++||++|+.+.|.++++++++.. .+.++.||- .+.+.+|++.++|++++ ||+.+ ..|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~~-------~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVTD-------MNEILEAGVTATPGVAV--DGELV-IMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeCC-------HHHHHHcCCCcCCEEEE--CCEEE-EEeccCCH
Confidence 3789999999999999999999999876 588877762 22367899999999999 88887 2232 455
Q ss_pred HHHHHHH
Q 027904 200 ERIDAAI 206 (217)
Q Consensus 200 ~~l~~~i 206 (217)
++|.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 82
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.45 E-value=5.9e-13 Score=99.18 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc--------------------chhHHHHHHcCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY--------------------DEQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~--------------------~~~~~l~~~~~I 176 (217)
+++++|+||++||++|+.+.|.+.++.+++.+...++.++.|++..+. +....+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 789999999999999999999999998888653335667766662221 123568899999
Q ss_pred CCCcEEEEEE-CCEEEEEe
Q 027904 177 KTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~~Pt~~~~k-~G~~v~~~ 194 (217)
.++|++++++ +|+++.+.
T Consensus 98 ~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 98 EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCEEEEECCCCCEEccc
Confidence 9999999996 99888664
No 83
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.44 E-value=1.7e-12 Score=91.14 Aligned_cols=73 Identities=22% Similarity=0.403 Sum_probs=58.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHcC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERLK 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---------------------~~~~~~l~~~~~ 175 (217)
||+++|+|||+||++|+...|.+.++.+++.+ ..++.++.|....+ .+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999994 44799998887432 123567899999
Q ss_pred CCCCcEEEEEE-CCEE
Q 027904 176 IKTVPLFHFYK-NGAL 190 (217)
Q Consensus 176 I~~~Pt~~~~k-~G~~ 190 (217)
|.++|++++++ +|++
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 99999999996 7753
No 84
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.43 E-value=8.7e-13 Score=98.57 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc---------------------chhHHHHHHc
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---------------------DEQSEVAERL 174 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~---------------------~~~~~l~~~~ 174 (217)
.+++++|+||++||++|+.+.|.+.++.+++.+...++.++.|++..+. .....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3899999999999999999999999999888753235777777663211 0124677889
Q ss_pred CCCCCcEEEEEE-CCEEEEEe
Q 027904 175 KIKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 175 ~I~~~Pt~~~~k-~G~~v~~~ 194 (217)
+|.++|++++++ +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999996 89888665
No 85
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.40 E-value=1.4e-12 Score=116.50 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHH-H--HHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS-K--LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~-~--l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
+.+.+.+++++++++++ +|+|+|+|||+||..|+.+++..- + ...+.+ +++.+++|++.+..++.++.++|
T Consensus 457 q~~s~~~~L~~~la~~~--~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~----~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 457 QPISPLAELDQALAEAK--AKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ----DVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred hccCCHHHHHHHHHhCC--CCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC----CeEEEEeeecCCCHHHHHHHHHc
Confidence 55666679999999864 479999999999999999998743 2 233334 59999999998888999999999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I~~~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
++-++|+++||. +|++...+ +..+.+.+.+++++..
T Consensus 531 ~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 531 GVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999999999997 78776667 5689999999998753
No 86
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.8e-13 Score=119.88 Aligned_cols=86 Identities=19% Similarity=0.376 Sum_probs=77.6
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
+.+.++ +.++|+.++... .+..+|.||++|||+|+.+.|.|.++++.+....+-+.++.|||-+ +.+..+|++|
T Consensus 39 D~ii~L-d~~tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--~~N~~lCRef 112 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--EENVKLCREF 112 (606)
T ss_pred CCeEEe-ehhhhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--hhhhhhHhhc
Confidence 566666 899999999874 5789999999999999999999999999998877789999999965 6888999999
Q ss_pred CCCCCcEEEEEE
Q 027904 175 KIKTVPLFHFYK 186 (217)
Q Consensus 175 ~I~~~Pt~~~~k 186 (217)
+|.++|++.+|.
T Consensus 113 ~V~~~Ptlryf~ 124 (606)
T KOG1731|consen 113 SVSGYPTLRYFP 124 (606)
T ss_pred CCCCCceeeecC
Confidence 999999999995
No 87
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.39 E-value=6.9e-12 Score=97.53 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=75.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc------------------chhHHHHHHcCCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY------------------DEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~------------------~~~~~l~~~~~I~~ 178 (217)
+++++|+||++||++|+...+.+.++.+++.+. ++.++.|++.+.. +....+.+.|+|..
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 789999999999999999999999999988753 4788888773321 23468899999999
Q ss_pred CcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHh
Q 027904 179 VPLFHFYK-NGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 179 ~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i~~~ 209 (217)
+|++++++ +|+.+... |..+.+++.+++++.
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 99999995 89888776 668899999988864
No 88
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.39 E-value=3.7e-12 Score=94.28 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+.+.|.++++.+.+ ++.++.|+..+. .|....+++.|++.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 789999999999999999999999998775 266666664221 14456788899999
Q ss_pred CCcEEEEE-ECCEEEEEe-CCCCHHHH
Q 027904 178 TVPLFHFY-KNGALVEAF-PTRDKERI 202 (217)
Q Consensus 178 ~~Pt~~~~-k~G~~v~~~-~g~~~~~l 202 (217)
++|+.+++ ++|+++.++ |..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 99977777 599999888 55666544
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.39 E-value=3.1e-12 Score=84.23 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=52.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
++.||++||++|+.+.+.+++++.... ++.+..+|+ +++++++++|++.++|++++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~----~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDA----AEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEc----ccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 678999999999999999999987654 499999999 78889999999999999865 56544
No 90
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.38 E-value=6e-13 Score=98.65 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHH---HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFS---KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
|....+|+++++.+++++|+++|+|+++||++|+.|...+- ++.+.... ++..+.++.... +.+.. ..+
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~t-d~~~~---~~g- 77 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETT-DKNLS---PDG- 77 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccC-CCCcC---ccC-
Confidence 44556899999999999999999999999999999998643 23333432 467667776211 11111 233
Q ss_pred CCCcEEEEEE-CCEEEEEe
Q 027904 177 KTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~~Pt~~~~k-~G~~v~~~ 194 (217)
.++||++|++ +|+++.++
T Consensus 78 ~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 78 QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred cccCeEEEECCCCCCcccc
Confidence 6899999995 88888776
No 91
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.9e-12 Score=111.38 Aligned_cols=108 Identities=24% Similarity=0.381 Sum_probs=93.6
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+..+ +.++|+..+... +..++|.||+|||++|+.+.|.|++++..+.. ...+.++.+|+ +.+..++.+++|
T Consensus 146 v~~l-~~~~~~~~~~~~---~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~----~~~~~~~~~~~v 216 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVKDS---DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDA----TVHKSLASRLEV 216 (383)
T ss_pred eEEc-cccchhhhhhcc---CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeecc----chHHHHhhhhcc
Confidence 5555 778888888774 78999999999999999999999999998864 44799999999 788999999999
Q ss_pred CCCcEEEEEECCEE-EEEe-CCCCHHHHHHHHHHhccCC
Q 027904 177 KTVPLFHFYKNGAL-VEAF-PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~-v~~~-~g~~~~~l~~~i~~~~~~~ 213 (217)
.++||+++|.+|.. .... +.++.+.|..|+.+.....
T Consensus 217 ~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 99999999987777 4444 6799999999999988764
No 92
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.36 E-value=2.5e-12 Score=88.32 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCc
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~P 180 (217)
.+|+++++.|++++++++|+|+++||++|+.|...+ .++.+.+.. ++.+++||. +.........+ .++|
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~----~~~~~~~~~~~-~~~P 75 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDV----DDEDPNAQFDR-QGYP 75 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEET----TTHHHHHHHHH-CSSS
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEc----CCCChhHHhCC-ccCC
Confidence 467888888888899999999999999999999876 344443433 599999999 33332222112 6699
Q ss_pred EEEEEE
Q 027904 181 LFHFYK 186 (217)
Q Consensus 181 t~~~~k 186 (217)
+++|++
T Consensus 76 ~~~~ld 81 (82)
T PF13899_consen 76 TFFFLD 81 (82)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999985
No 93
>smart00594 UAS UAS domain.
Probab=99.35 E-value=5.6e-12 Score=93.12 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=78.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHH-H--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGF-S--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l-~--~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~ 178 (217)
-...|+++++.+++++|+++|+|+++||++|+.+...+ . ++.+.+.. ++.+..+|+.+ .+...++.+|++.+
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~--~eg~~l~~~~~~~~ 86 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDT--SEGQRVSQFYKLDS 86 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCC--hhHHHHHHhcCcCC
Confidence 45678888888888899999999999999999988752 2 33444443 58898999854 45678999999999
Q ss_pred CcEEEEEE-CC-----EEEEEe-CCCCHHHHHHHH
Q 027904 179 VPLFHFYK-NG-----ALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 179 ~Pt~~~~k-~G-----~~v~~~-~g~~~~~l~~~i 206 (217)
+|+++++. +| +.+.++ |..++++|..+|
T Consensus 87 ~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 87 FPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999995 54 345566 568899998876
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=7.8e-12 Score=121.44 Aligned_cols=93 Identities=22% Similarity=0.363 Sum_probs=76.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc--CC---------------------cchhHHHHHH
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--DE---------------------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~--d~---------------------~~~~~~l~~~ 173 (217)
++++||+|||+||++|+...|.|+++.+++.+. ++.++.|... |+ .+....+.++
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 899999999999999999999999999998752 5777777421 11 1234567889
Q ss_pred cCCCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 174 LKIKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 174 ~~I~~~Pt~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
|+|.++|+++++ ++|+++.++ |....+.|.++|++.+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 999999999999 599999998 55788999999988754
No 95
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.34 E-value=2.9e-11 Score=89.75 Aligned_cols=104 Identities=8% Similarity=0.047 Sum_probs=85.6
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECC--CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRT--SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~--wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..+++..+.. +...+|.|-.+ -++.+....-.++++++++.+ .++.|++||+ +.+++++.+|+|.++
T Consensus 23 ~~~~~~~~~~~----~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDi----D~~~~LA~~fgV~si 92 (132)
T PRK11509 23 SESRLDDWLTQ----APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADL----EQSEAIGDRFGVFRF 92 (132)
T ss_pred ccccHHHHHhC----CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEEC----CCCHHHHHHcCCccC
Confidence 44777777765 45555555433 467778888889999999973 1499999999 999999999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHHHHHHHhccCCCC
Q 027904 180 PLFHFYKNGALVEAF-PTRDKERIDAAILKYTSTTSN 215 (217)
Q Consensus 180 Pt~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~~~~~~ 215 (217)
||++||++|+.+..+ |..+.+++.++|++++.+..+
T Consensus 93 PTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred CEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 999999999999999 558999999999999877543
No 96
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.34 E-value=2.4e-11 Score=84.78 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
+..-+..|+++||++|..+.+.++++++.++. +.+..+|. +..++++.+|+|.++|++++ ||+.+.. |.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~----~~~~e~a~~~~V~~vPt~vi--dG~~~~~-G~ 80 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDG----ALFQDEVEERGIMSVPAIFL--NGELFGF-GR 80 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEh----HhCHHHHHHcCCccCCEEEE--CCEEEEe-CC
Confidence 56678889999999999999999999988754 99999999 88899999999999999964 8887764 43
Q ss_pred CCHHHH
Q 027904 197 RDKERI 202 (217)
Q Consensus 197 ~~~~~l 202 (217)
.+.+++
T Consensus 81 ~~~~e~ 86 (89)
T cd03026 81 MTLEEI 86 (89)
T ss_pred CCHHHH
Confidence 444444
No 97
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.29 E-value=5.9e-11 Score=92.86 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=67.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC--------c-chhHHHHHHcCC--CCCcEEEEEE-CC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE--------Y-DEQSEVAERLKI--KTVPLFHFYK-NG 188 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~--------~-~~~~~l~~~~~I--~~~Pt~~~~k-~G 188 (217)
+|+||++||++|++..|.+.++++++. +.++.|++.+. . +....+...|++ .++|+.++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 777999999999999999999999974 56666665322 1 133457788995 6999999995 89
Q ss_pred EEEE--EeCCCCHHHHHHHHHHhccC
Q 027904 189 ALVE--AFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 189 ~~v~--~~~g~~~~~l~~~i~~~~~~ 212 (217)
+.+. ..|..+.++|++.|++.+..
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 8864 34889999999999887643
No 98
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.28 E-value=3.1e-11 Score=88.61 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----------------CcchhHHHHHHcCCCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----------------EYDEQSEVAERLKIKTV 179 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-----------------~~~~~~~l~~~~~I~~~ 179 (217)
+++++|+||++||++|+.+.|.+.++.+.+. +..+.+|-.+ -.+.+..++++|+|.++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 94 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVT 94 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcc
Confidence 6899999999999999999999999987732 3333333210 01344679999999999
Q ss_pred cEEEEEECCEEEEEe-CCCCHHHHHHH
Q 027904 180 PLFHFYKNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 180 Pt~~~~k~G~~v~~~-~g~~~~~l~~~ 205 (217)
|+++++++|.++... |..+.+.|.+.
T Consensus 95 P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 95 PAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 999999744466666 55788888653
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.25 E-value=4e-11 Score=86.86 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=54.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch-----------------hHHHHHHcCCCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-----------------QSEVAERLKIKTV 179 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~-----------------~~~l~~~~~I~~~ 179 (217)
+++++|+||++||++|+.+.|.++++.+.+.+ ++.++.+. .++.++ ...+.++|++.++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 78999999999999999999999999887754 46666552 111111 2346677788888
Q ss_pred cEEEEEE-CCEEEEE
Q 027904 180 PLFHFYK-NGALVEA 193 (217)
Q Consensus 180 Pt~~~~k-~G~~v~~ 193 (217)
|+.++++ +|+++.+
T Consensus 97 P~~~vid~~G~v~~~ 111 (114)
T cd02967 97 PYAVLLDEAGVIAAK 111 (114)
T ss_pred CeEEEECCCCeEEec
Confidence 9988885 7876653
No 100
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.25 E-value=6.4e-11 Score=87.68 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=63.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----C------------------cchhHHHHHH
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----E------------------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-----~------------------~~~~~~l~~~ 173 (217)
+++++|+||++||++|+...|.+.++.+++.+. ++.++.|+..+ . .|....+.+.
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 799999999999999999999999999998753 57787775421 0 1334567788
Q ss_pred cCCCCCcEEEEEE-CCEEEEEeCC
Q 027904 174 LKIKTVPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 174 ~~I~~~Pt~~~~k-~G~~v~~~~g 196 (217)
|++.++|++++++ +|+++..+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 9999999999995 8999888744
No 101
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.25 E-value=6.3e-11 Score=84.64 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=63.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-------------------cchhHHHHHHcCCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-------------------~~~~~~l~~~~~I~ 177 (217)
+++++|+||++||++|+...+.+.++.+++.. .++.++.|++..+ .+....+.+.|++.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 78999999999999999999999999998852 2589999998221 01126789999999
Q ss_pred CCcEEEEEE-CCEEEEEeC
Q 027904 178 TVPLFHFYK-NGALVEAFP 195 (217)
Q Consensus 178 ~~Pt~~~~k-~G~~v~~~~ 195 (217)
++|++++++ +|+++..+.
T Consensus 97 ~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ccceEEEECCCCcEEEEec
Confidence 999999995 898887763
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.24 E-value=1.4e-10 Score=94.75 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=70.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------CcchhHHHH-HHcC-------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVA-ERLK------------- 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-------~~~~~~~l~-~~~~------------- 175 (217)
+++++|+||++||++|+...|.|.++.+++.+. ++.++.|++.+ +.++...++ ++++
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 799999999999999999999999999998753 58888888631 111222222 2322
Q ss_pred ---------------------CCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 176 ---------------------IKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 176 ---------------------I~~~Pt~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
|...|+.+++ ++|+++.++ |..++++|++.|++++.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1235888888 599999998 66789999999998874
No 103
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.24 E-value=1e-10 Score=88.57 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=64.0
Q ss_pred CCCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC
Q 027904 116 TGSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK 177 (217)
Q Consensus 116 ~~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~~~l~~~~~I~ 177 (217)
.+++++|+||++ ||++|+...|.+.++.+.+.+. ++.++.|...++ .|....+.++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVT 104 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCc
Confidence 389999999999 9999999999999998886543 577777765332 23456788999988
Q ss_pred ---------CCcEEEEEE-CCEEEEEeCC
Q 027904 178 ---------TVPLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 178 ---------~~Pt~~~~k-~G~~v~~~~g 196 (217)
++|+++++. +|+++....+
T Consensus 105 ~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 105 IMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp EECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred cccccccCCeecEEEEEECCCEEEEEEeC
Confidence 999999885 9999988844
No 104
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.21 E-value=2e-10 Score=91.07 Aligned_cols=90 Identities=13% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC--------------CcchhHHHHHHcCCCCCcEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID--------------EYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d--------------~~~~~~~l~~~~~I~~~Pt~ 182 (217)
+++++|+||++||++|+.+.|.+.++.+.... ++.++..|-.+ ......++.+.|++.++|+.
T Consensus 74 gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~---~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 74 GRPTLLMFTAPSCPVCDKLFPIIKSIARAEET---DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHhcCC---cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 78999999999999999999999998876432 35544422100 01124577889999999998
Q ss_pred EEEE-CCEEEEEeCCCCHHHHHHHHHHh
Q 027904 183 HFYK-NGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~k-~G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
++++ +|+++........+.++++++..
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 8885 89888764345667788887755
No 105
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.19 E-value=2.1e-10 Score=91.74 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=70.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-------CCcchhHHHHHHcCCC------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-------DEYDEQSEVAERLKIK------------ 177 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~-------d~~~~~~~l~~~~~I~------------ 177 (217)
+++++|.|||+||++|+...|.+.++.+++.+. ++.++.|++. ++.++....++++++.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 899999999999999999999999999998753 5888888762 1122344555555541
Q ss_pred ------------------------CCc---EEEEE-ECCEEEEEeC-CCCHHHHHHHHHHhccC
Q 027904 178 ------------------------TVP---LFHFY-KNGALVEAFP-TRDKERIDAAILKYTST 212 (217)
Q Consensus 178 ------------------------~~P---t~~~~-k~G~~v~~~~-g~~~~~l~~~i~~~~~~ 212 (217)
.+| +.+++ ++|+++.++. ..+.+.|++.|++++..
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 122 45556 6999999884 47888899999887754
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.16 E-value=2.4e-10 Score=89.87 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEE------EEEEccCC-------------------------c
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIF------LKHNVIDE-------------------------Y 164 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~------~~Vd~~d~-------------------------~ 164 (217)
.||..+|+|||+||++|+...|.++++..+ ++.+ +-||..|. .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 389999999999999999999999999653 2333 55555331 1
Q ss_pred chhHHHHHHcCCCCCcEE-EEE-ECCEEEEEe-CCCCHHHHHHHH
Q 027904 165 DEQSEVAERLKIKTVPLF-HFY-KNGALVEAF-PTRDKERIDAAI 206 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~-~~~-k~G~~v~~~-~g~~~~~l~~~i 206 (217)
|....+...|++.++|+. +++ ++|+++... |..+.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 233456789999999888 567 599999988 667887776633
No 107
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.13 E-value=3e-10 Score=83.01 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEECC-------CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHHH
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYRT-------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSEV 170 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a~-------wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---~~~~~~l 170 (217)
.+.++|.++++....++++++|.|+++ ||+.|+...|.+++.....+. +..++.|.+.+. .+.+...
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHH
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCc
Confidence 467899999988666689999999954 999999999999998887655 688888887542 1122234
Q ss_pred HH--HcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027904 171 AE--RLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 171 ~~--~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~ 207 (217)
.. +++|+++||++-|.+++.+....-.+.+.|..+++
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEHHHHH-HHHHHHHHH
T ss_pred eEcceeeeeecceEEEECCCCccchhhhccHHHHHHHhc
Confidence 44 59999999999998775544333456666666665
No 108
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.09 E-value=1.9e-09 Score=82.53 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=67.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-------CCcchhHHHHHH-cCC------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-------DEYDEQSEVAER-LKI------------ 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~-------d~~~~~~~l~~~-~~I------------ 176 (217)
|++++|.|||+||++|+...|.+.++.+++.+. ++.++.|++. +..+.....+++ +++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 789999999999999999999999999998753 6888888851 111222333332 221
Q ss_pred --------------CCCcE----EEEE-ECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 177 --------------KTVPL----FHFY-KNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 177 --------------~~~Pt----~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
.++|+ .+++ ++|+++..+ +..+.++|.+.|++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 24785 5555 699999998 6688999999887653
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.08 E-value=8.8e-10 Score=73.01 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=55.1
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~ 200 (217)
+..|+++||++|+.+.+.|.+. ++.+..+|+.++.....++.+.+++.++|++++. |+. +.|.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHH
Confidence 4679999999999998887651 3778888984332233457788999999999874 654 5567888
Q ss_pred HHHHHHH
Q 027904 201 RIDAAIL 207 (217)
Q Consensus 201 ~l~~~i~ 207 (217)
.|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 9888873
No 110
>PLN02412 probable glutathione peroxidase
Probab=99.08 E-value=2.1e-09 Score=83.64 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=70.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Ccchh----HHHHHHcC-------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EYDEQ----SEVAERLK------------- 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d----~~~~~----~~l~~~~~------------- 175 (217)
+++++|+||++||++|+...|.|.++.+++.+. ++.++.|++.+ +.+.. ..+.++++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 799999999999999999999999999999863 58888887631 00111 11122221
Q ss_pred ---------------------CCCCcEEEEE-ECCEEEEEe-CCCCHHHHHHHHHHhccC
Q 027904 176 ---------------------IKTVPLFHFY-KNGALVEAF-PTRDKERIDAAILKYTST 212 (217)
Q Consensus 176 ---------------------I~~~Pt~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~~~ 212 (217)
|...|+.+++ ++|+++.++ +..+.++|++.|++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3345888888 599999998 668899999999988754
No 111
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.05 E-value=9.7e-10 Score=91.31 Aligned_cols=106 Identities=25% Similarity=0.432 Sum_probs=81.5
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|.+.++|-+++.... .+..|||+||-+.++.|..|...|..|+.+|+. +.|++|.. ...+ +..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~-~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a----~~~~-~~~~ 193 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKES-KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRA----SKCP-ASEN 193 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSS-TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEE----CGCC-TTTT
T ss_pred CceEEEccChhhHHHHHhccC-CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEeh----hccC-cccC
Confidence 568889988899999987642 256899999999999999999999999999987 99999998 5544 6788
Q ss_pred cCCCCCcEEEEEECCEEEEEeC------C--CCHHHHHHHHHHh
Q 027904 174 LKIKTVPLFHFYKNGALVEAFP------T--RDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~~------g--~~~~~l~~~i~~~ 209 (217)
|.+..+||+++|++|..+..+. | ...++|+.+|.++
T Consensus 194 f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999999999999998872 2 4567888888765
No 112
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.03 E-value=5.5e-09 Score=81.32 Aligned_cols=96 Identities=27% Similarity=0.341 Sum_probs=74.8
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------C------------------cchhHHHH
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------E------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-------~------------------~~~~~~l~ 171 (217)
++++||+||++||+.|....+.+.++.+++.+. ++.|+.|...+ . .+....+.
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 789999999999999999999999999998742 58888887632 1 12334677
Q ss_pred HHcCCCCCcEEEEEE-CCEEEEEeC----------CCCHHHHHHHHHHhccCCC
Q 027904 172 ERLKIKTVPLFHFYK-NGALVEAFP----------TRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 172 ~~~~I~~~Pt~~~~k-~G~~v~~~~----------g~~~~~l~~~i~~~~~~~~ 214 (217)
+.|++..+|++++++ +|+++.... ..+.+++.+.|+..+....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 889999999999995 888876631 1356889999998876543
No 113
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.03 E-value=8.6e-10 Score=85.70 Aligned_cols=89 Identities=27% Similarity=0.474 Sum_probs=83.1
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+.+.+|.+..+|-+.+.. ..-|++.||-+.-..|+.|..+|+.+++.+-+ ..|++||+ +..+-|+.+
T Consensus 65 hG~y~ev~~Ekdf~~~~~k----S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvna----e~~PFlv~k 132 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKK----SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNA----EKAPFLVTK 132 (211)
T ss_pred CceEEEeccHHHHHHHhhc----CceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEec----ccCceeeee
Confidence 5688899899999888876 57899999999999999999999999999887 89999999 999999999
Q ss_pred cCCCCCcEEEEEECCEEEEEe
Q 027904 174 LKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~ 194 (217)
++|.-+|++++|++|+.+.++
T Consensus 133 L~IkVLP~v~l~k~g~~~D~i 153 (211)
T KOG1672|consen 133 LNIKVLPTVALFKNGKTVDYV 153 (211)
T ss_pred eeeeEeeeEEEEEcCEEEEEE
Confidence 999999999999999999987
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.03 E-value=2.6e-09 Score=81.72 Aligned_cols=86 Identities=21% Similarity=0.385 Sum_probs=61.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-------CcchhHHHHHH-cC-------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-------EYDEQSEVAER-LK------------- 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-------~~~~~~~l~~~-~~------------- 175 (217)
+++++|+|||+||+ |+...|.+.++.+++.+. ++.++.|++.+ ..+....++++ ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~ 98 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNG 98 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccC
Confidence 79999999999999 999999999999998643 68888887521 11222333332 22
Q ss_pred ----------CCCCc-----------EEEEE-ECCEEEEEe-CCCCHHHHHHH
Q 027904 176 ----------IKTVP-----------LFHFY-KNGALVEAF-PTRDKERIDAA 205 (217)
Q Consensus 176 ----------I~~~P-----------t~~~~-k~G~~v~~~-~g~~~~~l~~~ 205 (217)
+.++| +.+++ ++|+++.++ |..+.++|++.
T Consensus 99 ~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 99 ENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 56677 599999998 55777777654
No 115
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.01 E-value=2.5e-09 Score=75.85 Aligned_cols=84 Identities=26% Similarity=0.472 Sum_probs=68.9
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHcC--CCCCcEEEEEECCEEEEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERLK--IKTVPLFHFYKNGALVEA 193 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~-~~~~l~~~~~--I~~~Pt~~~~k~G~~v~~ 193 (217)
++++++.||++||++|+.+.|.+.++.+.+.. .+.++.+|. . ....+...|+ +..+|+++++.+|..+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNV----DDENPDLAAEFGVAVRSIPTLLLFKDGKEVDR 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEEC----CCCChHHHHHHhhhhccCCeEEEEeCcchhhh
Confidence 68999999999999999999999999999875 589999998 5 6788899999 999999999988877555
Q ss_pred e-C--CCCHHHHHHHHH
Q 027904 194 F-P--TRDKERIDAAIL 207 (217)
Q Consensus 194 ~-~--g~~~~~l~~~i~ 207 (217)
. + ......+.....
T Consensus 105 ~~~~~~~~~~~~~~~~~ 121 (127)
T COG0526 105 LVGGKVLPKEALIDALG 121 (127)
T ss_pred hhhcccCCHHHHHHHhc
Confidence 5 3 355555554443
No 116
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.9e-10 Score=88.56 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=82.2
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
++.+..++..+.+++.+... ....|+|.|+|.|.+.|+...|.+.++..+|.. +.+.|.+||+ ...++.+.+
T Consensus 123 pe~ikyf~~~q~~deel~rn--k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDi----Grfpd~a~k 194 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRN--KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDI----GRFPDVAAK 194 (265)
T ss_pred chheeeecchhhHHHHhccC--CceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceee----ccCcChHHh
Confidence 56777888888888888764 368999999999999999999999999999864 3799999999 899999999
Q ss_pred cCCC------CCcEEEEEECCEEEEEe
Q 027904 174 LKIK------TVPLFHFYKNGALVEAF 194 (217)
Q Consensus 174 ~~I~------~~Pt~~~~k~G~~v~~~ 194 (217)
|+|. .+||+++|++|+.+.+.
T Consensus 195 fris~s~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 195 FRISLSPGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred eeeccCcccccCCeEEEEccchhhhcC
Confidence 9884 69999999999999886
No 117
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.00 E-value=1.5e-09 Score=82.22 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=62.7
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHcC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERLK 175 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---------------------~~~~~~l~~~~~ 175 (217)
||.|.++|.|.||++|+.+.|.+.++.+++.+....+.++-|+-..+ .+...+++++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 89999999999999999999999999998877544566665554221 234568899999
Q ss_pred CCCCcEEEEEE-CCEEEEEe
Q 027904 176 IKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 176 I~~~Pt~~~~k-~G~~v~~~ 194 (217)
|.++|++++++ +|..+...
T Consensus 113 v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVTED 132 (157)
T ss_pred cCcCceeEEecCCCCEehHh
Confidence 99999999996 89888664
No 118
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.96 E-value=4.1e-09 Score=80.93 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HH--HHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc--------CC
Q 027904 108 KILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FS--KLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL--------KI 176 (217)
Q Consensus 108 ~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~--~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~--------~I 176 (217)
++++.|++++|+++|.++.+||++|+.|... |. ++++.+.. +++-++||. ++.+++...| +.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDr----ee~Pdid~~y~~~~~~~~~~ 100 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDR----EERPDIDKIYMNAVQAMSGS 100 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEET----TT-HHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecc----ccCccHHHHHHHHHHHhcCC
Confidence 3444444459999999999999999999864 32 34555543 588899999 8889998888 78
Q ss_pred CCCcEEEEEE-CCEEEEEeC
Q 027904 177 KTVPLFHFYK-NGALVEAFP 195 (217)
Q Consensus 177 ~~~Pt~~~~k-~G~~v~~~~ 195 (217)
.|+|+.+|+. +|+++....
T Consensus 101 gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 101 GGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp --SSEEEEE-TTS-EEEEES
T ss_pred CCCCceEEECCCCCeeeeee
Confidence 9999999996 999987653
No 119
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.94 E-value=2e-08 Score=73.46 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=78.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEECC----CChhhHHhH--HHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027904 105 EFFKILEKSKETGSLVVVDFYRT----SCGSCKYIE--QGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~----wC~~C~~~~--p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~ 178 (217)
.|++++..++++.|.++|++|++ ||..|+... |.+.+... . ++.+...|+.. .+...++..+++.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~---~fv~w~~dv~~--~eg~~la~~l~~~~ 76 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T---RMLFWACSVAK--PEGYRVSQALRERT 76 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c---CEEEEEEecCC--hHHHHHHHHhCCCC
Confidence 57888888888899999999999 999997654 34444433 2 58899999943 45678999999999
Q ss_pred CcEEEEE---E-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 179 VPLFHFY---K-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 ~Pt~~~~---k-~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
+|++.++ . +.+++.++ |..++++|...|.....
T Consensus 77 ~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 77 YPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 9999999 2 34567777 66999999999987654
No 120
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-08 Score=75.70 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHhhhcCCCeEEEEEECCCChhhHHhHHHHHH---HHHHhCCCCCCEEEEEEEccCC------------cchhHHHHHHc
Q 027904 110 LEKSKETGSLVVVDFYRTSCGSCKYIEQGFSK---LCKGSGDQEAPVIFLKHNVIDE------------YDEQSEVAERL 174 (217)
Q Consensus 110 l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~---l~~~~~~~~~~v~~~~Vd~~d~------------~~~~~~l~~~~ 174 (217)
..++..+++..++.|-++.|.+|..+...+.. +.+-+.. ++.++.+|+.+. .....+|++.|
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 33444468999999999999999999877543 3444443 688999887553 22456999999
Q ss_pred CCCCCcEEEEEE-CCEEEEEe-CCCCHHHHHHHHH
Q 027904 175 KIKTVPLFHFYK-NGALVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 175 ~I~~~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i~ 207 (217)
+|+++||++||+ +|+.+..+ |..+++++...++
T Consensus 112 ~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999999996 89999999 5588888876654
No 121
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.87 E-value=5.3e-10 Score=89.30 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=89.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
.++.+ +.+++...+. .-+++.|+|+||+.|+.+.++|+.++.--.+ -.+.+.+||+ ..++.|.-+|-
T Consensus 25 ~~~~~-~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDv----t~npgLsGRF~ 91 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDV----TTNPGLSGRFL 91 (248)
T ss_pred eeEEe-cccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEE----EeccccceeeE
Confidence 44555 8899998885 4589999999999999999999999886444 3799999999 88999999999
Q ss_pred CCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhcc
Q 027904 176 IKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 176 I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~ 211 (217)
++..|||...++|..-.+.|.++..+++.|+...--
T Consensus 92 vtaLptIYHvkDGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred EEecceEEEeeccccccccCcccchhHHHHHHhhhh
Confidence 999999999999998888899999999999986543
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.80 E-value=3.2e-08 Score=66.28 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=47.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH-----cCCCCCcEEEEEECCEEEEEeC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER-----LKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~-----~~I~~~Pt~~~~k~G~~v~~~~ 195 (217)
++.||++||++|+.+.+.|.++. +.+-.+|+ ++....... +++.++|++ ++.+|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi----~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~--- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDI----EEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT--- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeC----cCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---
Confidence 56799999999999999887652 34556777 333333333 489999997 578887654
Q ss_pred CCCHHHHHHHHH
Q 027904 196 TRDKERIDAAIL 207 (217)
Q Consensus 196 g~~~~~l~~~i~ 207 (217)
.....++.+.|+
T Consensus 65 ~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 NPSAAQVKAKLQ 76 (77)
T ss_pred CCCHHHHHHHhh
Confidence 344456655553
No 123
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.78 E-value=4.4e-08 Score=73.30 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCCC
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~~~l~~~~~I~~ 178 (217)
+++++|.|| +.||+.|....+.+.++..++.+. ++.++.|...+. .|....+.+.|++..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 789999999 589999999999999999888642 467777654211 233456788899988
Q ss_pred C---------cEEEEEE-CCEEEEEeC-CCCHHHHHHH
Q 027904 179 V---------PLFHFYK-NGALVEAFP-TRDKERIDAA 205 (217)
Q Consensus 179 ~---------Pt~~~~k-~G~~v~~~~-g~~~~~l~~~ 205 (217)
. |++++++ +|+++..+. ....+.+.+.
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 8 8999996 899998884 4445555443
No 124
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.78 E-value=7.1e-08 Score=71.81 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=53.0
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc---CCCCCcEEEEEE-CCEEEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL---KIKTVPLFHFYK-NGALVE 192 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~---~I~~~Pt~~~~k-~G~~v~ 192 (217)
.+.-++.|..+|||.|+...|.+.++++..+. +.+--+.. |.+.++.++| +...+|++++++ +|+.+.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~r----d~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILR----DENKELMDQYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-H----HHHHHHTTTTTT-SS--SSEEEEE-TT--EEE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEe----cCChhHHHHHHhCCCeecCEEEEEcCCCCEeE
Confidence 56788889999999999999999999998654 55555555 7777777665 678899999995 789999
Q ss_pred EeCCCCHHHHHHHHH
Q 027904 193 AFPTRDKERIDAAIL 207 (217)
Q Consensus 193 ~~~g~~~~~l~~~i~ 207 (217)
+++.+.. .+.+++.
T Consensus 113 ~wgerP~-~~~~~~~ 126 (129)
T PF14595_consen 113 RWGERPK-EVQELVD 126 (129)
T ss_dssp EEESS-H-HHH----
T ss_pred EEcCCCH-HHhhccc
Confidence 9987643 3334433
No 125
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7e-09 Score=82.57 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=87.9
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
++.+...++| ... .++.+++.||++||.+|..+...+..+++... ++.+++++. ++.++++..+.+
T Consensus 3 v~~i~~~~~f--~~~----~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a----~~~~eis~~~~v 68 (227)
T KOG0911|consen 3 VQFIVFQEQF--LDQ----KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEA----EEFPEISNLIAV 68 (227)
T ss_pred ceeehhHHHH--HHh----ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehh----hhhhHHHHHHHH
Confidence 5667778888 333 28999999999999999999999999999874 599999999 999999999999
Q ss_pred CCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccC
Q 027904 177 KTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 177 ~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~ 212 (217)
...|+++++..|+.+.++.+.++..+...++.+...
T Consensus 69 ~~vp~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 104 (227)
T KOG0911|consen 69 EAVPYFVFFFLGEKVDRLSGADPPFLVSKVEKLAES 104 (227)
T ss_pred hcCceeeeeecchhhhhhhccCcHHHHHHHHHhhhh
Confidence 999999999999999999887777777777666544
No 126
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.77 E-value=5.4e-08 Score=71.18 Aligned_cols=74 Identities=24% Similarity=0.354 Sum_probs=60.7
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC-
Q 027904 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK- 177 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~~~l~~~~~I~- 177 (217)
+++++|.||+. ||++|+...+.+.++..+++.. ++.++.|...+. .|....+.+.|++.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 79999999999 9999999999999999988743 588888876321 23455788889998
Q ss_pred -----CCcEEEEEE-CCEEEE
Q 027904 178 -----TVPLFHFYK-NGALVE 192 (217)
Q Consensus 178 -----~~Pt~~~~k-~G~~v~ 192 (217)
.+|++++++ +|+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTTSEESEEEEEEETTSBEEE
T ss_pred ccCCceEeEEEEECCCCEEEe
Confidence 899999996 777664
No 127
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3e-08 Score=71.31 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHhhhcCCCeEEEEEEC--------CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHH
Q 027904 101 KTDAEFFKILEKSKETGSLVVVDFYR--------TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSE 169 (217)
Q Consensus 101 ~s~~~f~~~l~~a~~~~k~vlV~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---~~~~~~ 169 (217)
...++|++.+++.. +++.++|.|++ +||+.|.+..|.+.+..+..+. ++.|+.|++.+. .+.+..
T Consensus 10 ~g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 10 PGYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred chHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCc
Confidence 46788999988764 36669999995 5999999999999998886655 799999998653 233445
Q ss_pred HHHHcCC-CCCcEEEEEEC
Q 027904 170 VAERLKI-KTVPLFHFYKN 187 (217)
Q Consensus 170 l~~~~~I-~~~Pt~~~~k~ 187 (217)
+....++ +++||++-|++
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 5666677 99999999974
No 128
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.75 E-value=1.3e-07 Score=74.62 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCeE-EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Cc---chhHHH-HHH--------------
Q 027904 117 GSLV-VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EY---DEQSEV-AER-------------- 173 (217)
Q Consensus 117 ~k~v-lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d----~~---~~~~~l-~~~-------------- 173 (217)
++++ ++.+||+||++|+...|.+.++.+++.+. ++.++.|++.+ +. +..... .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~ 117 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVN 117 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecC
Confidence 6754 45669999999999999999999998753 58888887521 00 011111 112
Q ss_pred ----------------------cCCCCCcE---EEEE-ECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 174 ----------------------LKIKTVPL---FHFY-KNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 174 ----------------------~~I~~~Pt---~~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
+++.++|+ .+++ ++|+++.++ +..+.+.+.+.|++++.
T Consensus 118 g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 118 GENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457794 3555 699999998 66788889999988764
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.74 E-value=1.2e-07 Score=74.06 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=69.2
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------------~~~~~~l~ 171 (217)
++.+||+|| +.||++|....+.|.++.+++... ++.++.|.+.+. .|....+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 789999999 899999999999999999998653 466666654221 12334677
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEeC-----CCCHHHHHHHHHHhc
Q 027904 172 ERLKIK------TVPLFHFYK-NGALVEAFP-----TRDKERIDAAILKYT 210 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~k-~G~~v~~~~-----g~~~~~l~~~i~~~~ 210 (217)
+.|++. .+|++++++ +|+++..+. +.+.+++.+.|+.+.
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 888886 578999996 898888772 246778888887653
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.74 E-value=6.1e-08 Score=61.01 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=48.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHH---HHcCCCCCcEEEEEECC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVA---ERLKIKTVPLFHFYKNG 188 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~---~~~~I~~~Pt~~~~k~G 188 (217)
++.||++||++|+.+.+.+.++ +.... ++.+..+|+ +...... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK---GVKFEAVDV----DEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC---CcEEEEEEc----CCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 699999998 4444433 48999999999999876
No 131
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.72 E-value=1.5e-07 Score=74.47 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=67.4
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHc
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERL 174 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---------------------~~~~~~l~~~~ 174 (217)
|++++|+|| +.||++|....+.|.++.+++.+. ++.++.|.+.+. .|....+++.|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 789999999 999999999999999998888643 455665554210 12345778899
Q ss_pred CCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHH
Q 027904 175 KIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILK 208 (217)
Q Consensus 175 ~I~------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~ 208 (217)
++. ..|+.++++ +|+++... .+.+.+++.+.|+.
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 986 469888885 89888775 24678888887754
No 132
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.72 E-value=1.5e-07 Score=73.16 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=65.2
Q ss_pred CCeEEEEEECCC-ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cc-hhHHHHHHcCC
Q 027904 117 GSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YD-EQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------~~-~~~~l~~~~~I 176 (217)
+++++|+||++| |++|....+.|.++.+++. ++.++.|...+. .| ....+++.|++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 789999999999 9999999999999988874 477777765321 12 23478889999
Q ss_pred CCCc---------EEEEEE-CCEEEEEeC------CCCHHHHHHHHH
Q 027904 177 KTVP---------LFHFYK-NGALVEAFP------TRDKERIDAAIL 207 (217)
Q Consensus 177 ~~~P---------t~~~~k-~G~~v~~~~------g~~~~~l~~~i~ 207 (217)
...| +.++++ +|+++.... ..+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8877 888885 999887762 134556665553
No 133
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.72 E-value=1.8e-07 Score=64.38 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=60.3
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC--CCCCcEEEEEECCEEEEEeCCC
Q 027904 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKTVPLFHFYKNGALVEAFPTR 197 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~--I~~~Pt~~~~k~G~~v~~~~g~ 197 (217)
-++.|+.+||++|+.+...|+++..++.+ +.+..+|+..+.....++....+ +.++|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig----- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG----- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----
Confidence 36789999999999999999999876543 88888888432122445666565 47899965 5887764
Q ss_pred CHHHHHHHHHHhcc
Q 027904 198 DKERIDAAILKYTS 211 (217)
Q Consensus 198 ~~~~l~~~i~~~~~ 211 (217)
..++|.++++.+++
T Consensus 71 g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 GCTDFEAYVKENLG 84 (85)
T ss_pred CHHHHHHHHHHhcc
Confidence 55788888887764
No 134
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.69 E-value=4e-07 Score=73.62 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred HHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc--C-----CcchhHHHHHHcCCCC
Q 027904 106 FFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--D-----EYDEQSEVAERLKIKT 178 (217)
Q Consensus 106 f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~--d-----~~~~~~~l~~~~~I~~ 178 (217)
-+++|... .++.-|++||.+.|++|..+.|.+..+++++. +.++-|++. . +.-.+..++++++|..
T Consensus 111 ~~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~ 183 (215)
T PF13728_consen 111 RDKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV 183 (215)
T ss_pred HHHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc
Confidence 34444443 26888999999999999999999999999985 455555541 0 0113578999999999
Q ss_pred CcEEEEEE-CCEEEEEe--CCCCHHHHHHHH
Q 027904 179 VPLFHFYK-NGALVEAF--PTRDKERIDAAI 206 (217)
Q Consensus 179 ~Pt~~~~k-~G~~v~~~--~g~~~~~l~~~i 206 (217)
+|+++++. ++.....+ |-.+.++|.+-|
T Consensus 184 ~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 184 TPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 99999996 55455554 568888887644
No 135
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.65 E-value=1e-06 Score=62.81 Aligned_cols=100 Identities=24% Similarity=0.266 Sum_probs=72.7
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
.++.|.++|+++++.+. +++++|+=.++.|+-.......|++......+ .+.++.+|+-...+-...++++|||.
T Consensus 2 ~~L~t~eql~~i~~~S~--~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESK--EKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVK 76 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT--
T ss_pred CccCCHHHHHHHHHhcc--cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCC
Confidence 45789999999999864 78999999999999999999999999998776 48899999955555556789999996
Q ss_pred -CCcEEEEEECCEEEEEe--CCCCHHHH
Q 027904 178 -TVPLFHFYKNGALVEAF--PTRDKERI 202 (217)
Q Consensus 178 -~~Pt~~~~k~G~~v~~~--~g~~~~~l 202 (217)
.-|.+++++||+.+... .+.+.+.|
T Consensus 77 HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 77 HESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp --SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cCCCcEEEEECCEEEEECccccCCHHhc
Confidence 47999999999999876 55677665
No 136
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.8e-07 Score=66.17 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=85.2
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
..++|..+.+++|... ..+.++|-|.-.|.+.|..|...+.++++.+.. -..++-||+ ++.+++.+.|++.
T Consensus 6 p~L~s~~~VdqaI~~t--~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~Iylvdi----deV~~~~~~~~l~ 76 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILST--EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDI----DEVPDFVKMYELY 76 (142)
T ss_pred cccccHHHHHHHHhcc--cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEec----chhhhhhhhhccc
Confidence 3467889999999875 479999999999999999999999999999876 478888999 8999999999999
Q ss_pred CCcEEEEEECCEEEEEe-C----------CCCHHHHHHHHHHh
Q 027904 178 TVPLFHFYKNGALVEAF-P----------TRDKERIDAAILKY 209 (217)
Q Consensus 178 ~~Pt~~~~k~G~~v~~~-~----------g~~~~~l~~~i~~~ 209 (217)
..|+++||-+++.+.-. | -.+.+++...++-.
T Consensus 77 ~p~tvmfFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 77 DPPTVMFFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred CCceEEEEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 99999999777665443 2 13566777766644
No 137
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.63 E-value=2.5e-07 Score=69.69 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=58.3
Q ss_pred CCeEEEEEECCC-ChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cchh-HHHHHHcCC
Q 027904 117 GSLVVVDFYRTS-CGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YDEQ-SEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------~~~~-~~l~~~~~I 176 (217)
+++++|+||+.| |++|+...+.+.++.+++. ++.++.|+..+. .+.. ..+++.|++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 789999999999 6999999999999999875 378888876321 1222 567788888
Q ss_pred CC------CcEEEEEE-CCEEEEEe
Q 027904 177 KT------VPLFHFYK-NGALVEAF 194 (217)
Q Consensus 177 ~~------~Pt~~~~k-~G~~v~~~ 194 (217)
.. .|+.++++ +|+++...
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEE
Confidence 53 68988885 89998887
No 138
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.62 E-value=2.5e-07 Score=63.04 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=50.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-chhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDK 199 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~-~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~ 199 (217)
++.|+++||++|+.+.+.+.++. ... .+.++.+|..++. +....+.+.+++.++|++ |-+|+.+. | .
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig---g--~ 68 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG---G--C 68 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc---C--H
Confidence 46799999999999999999876 222 3778877762211 112347778899999997 45777653 2 3
Q ss_pred HHHHHHHH
Q 027904 200 ERIDAAIL 207 (217)
Q Consensus 200 ~~l~~~i~ 207 (217)
+++.+..+
T Consensus 69 ~~~~~~~~ 76 (84)
T TIGR02180 69 SDLLALYK 76 (84)
T ss_pred HHHHHHHH
Confidence 55555443
No 139
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.62 E-value=3.6e-07 Score=72.03 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~ 161 (217)
|+++||.|||+||++|.. .+.|+++.++|.+. ++.++.+.+.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~--gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ--GFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC--CeEEEEeecc
Confidence 899999999999999975 78999999998753 6888888773
No 140
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.61 E-value=6.9e-07 Score=70.74 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=71.0
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------------------cchhHHHHHHc
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------------------YDEQSEVAERL 174 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---------------------~~~~~~l~~~~ 174 (217)
+++++|.|| +.||+.|....+.|.++..++.+. ++.++.|...+. .|....+++.|
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 789999999 999999999999999999988643 466666665221 12345788999
Q ss_pred CC----CCC--cEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 175 KI----KTV--PLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I----~~~--Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
++ .++ |+.++++ +|+++... .+.+.+++.+.|+.+-
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 98 356 9999996 89887765 3578999999886553
No 141
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.61 E-value=4.6e-07 Score=68.52 Aligned_cols=88 Identities=19% Similarity=0.110 Sum_probs=63.0
Q ss_pred CeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchh--HHHHHHcCCC
Q 027904 118 SLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQ--SEVAERLKIK 177 (217)
Q Consensus 118 k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~--~~l~~~~~I~ 177 (217)
++++|.|| ++||+.|....|.+.++.+++.+. ++.++.|...+. .|.. ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 999999999999999999988642 577777764220 2333 6778888887
Q ss_pred C----Cc--EEEEEE-CCEEEEEeC-----CCCHHHHHHHHH
Q 027904 178 T----VP--LFHFYK-NGALVEAFP-----TRDKERIDAAIL 207 (217)
Q Consensus 178 ~----~P--t~~~~k-~G~~v~~~~-----g~~~~~l~~~i~ 207 (217)
. +| ++++++ +|+++.... +.+..++.+.|+
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 33 777785 899888873 344556665553
No 142
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.59 E-value=4.5e-07 Score=68.31 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=33.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
+..+|+.|++.||++|+...+.+.++.+++.+. ++.++.|..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~ 65 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGP 65 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeC
Confidence 345555567999999999999999999988532 588888876
No 143
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.56 E-value=1.5e-06 Score=58.54 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=53.2
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
|.+++++|+.|..+...+.++...+. +.+--+|. ...+++ .+|||.++|++++ ||+.+..-.--+.++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~----~~~~~~-~~ygv~~vPalvI--ng~~~~~G~~p~~~e 70 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI----EDFEEI-EKYGVMSVPALVI--NGKVVFVGRVPSKEE 70 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET----TTHHHH-HHTT-SSSSEEEE--TTEEEEESS--HHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc----cCHHHH-HHcCCCCCCEEEE--CCEEEEEecCCCHHH
Confidence 34478889999999999999988873 55555566 566677 9999999999854 777553322567788
Q ss_pred HHHHHH
Q 027904 202 IDAAIL 207 (217)
Q Consensus 202 l~~~i~ 207 (217)
|.++|+
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 144
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.56 E-value=7.6e-07 Score=71.36 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCeEEE-EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027904 117 GSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------------~~~~~~l~~ 172 (217)
++.++| .||++||+.|....+.|.++.+++.+. ++.++.|.+.+. .|....+++
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 666655 689999999999999999998888653 466666655210 123457788
Q ss_pred HcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 173 RLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 173 ~~~I~------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
.|++. .+|+.+++. +|++.... .|++.+++.+.|+.+.
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 89984 589999996 88777554 4789999999998765
No 145
>PRK15000 peroxidase; Provisional
Probab=98.55 E-value=8.3e-07 Score=71.05 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCeEEEEEEC-CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027904 117 GSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------------~~~~~~l~ 171 (217)
++.++|+||+ .||+.|....+.|.++.+++... ++.++.|.+.+. .|....++
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 7899999999 49999999999999999998753 466777765321 12334677
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 172 ERLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
+.|++. ++|+.++++ +|++.... .|++.+++.+.|+.+.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 888987 799999996 89888765 3689999999887643
No 146
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.55 E-value=7.5e-07 Score=67.99 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCeEEEEEECC-CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCCC
Q 027904 117 GSLVVVDFYRT-SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIKT 178 (217)
Q Consensus 117 ~k~vlV~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~~~l~~~~~I~~ 178 (217)
+++++|+||+. ||+.|....+.+.++.+++.+. ++.++.|...+. .+....+.+.|++..
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 78999999986 6888999999999998888643 577777765221 233456778888765
Q ss_pred C------------cEEEEEE-CCEEEEEeCC
Q 027904 179 V------------PLFHFYK-NGALVEAFPT 196 (217)
Q Consensus 179 ~------------Pt~~~~k-~G~~v~~~~g 196 (217)
. |+.++++ +|+++..+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 4 6667774 9999988854
No 147
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.53 E-value=2e-06 Score=72.77 Aligned_cols=109 Identities=13% Similarity=0.189 Sum_probs=78.9
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHH-----hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHH
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKY-----IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE 169 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~-----~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~ 169 (217)
..|..+ +..||.++++. .+.++|+||.+--..=-. |...+-+|+.+.-. ..++.|+.||. .+...
T Consensus 34 DRVi~L-neKNfk~~lKk----yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-~~gigfg~VD~----~Kd~k 103 (383)
T PF01216_consen 34 DRVIDL-NEKNFKRALKK----YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-DKGIGFGMVDS----KKDAK 103 (383)
T ss_dssp --CEEE--TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-GCTEEEEEEET----TTTHH
T ss_pred cceEEc-chhHHHHHHHh----hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-ccCcceEEecc----HHHHH
Confidence 456666 88999999988 688999999886422221 23334455555432 45799999999 99999
Q ss_pred HHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCC
Q 027904 170 VAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 170 l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~ 213 (217)
+++++|+...+++.+|++|+.+.+.|.++++.|..||...+..+
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSS
T ss_pred HHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999988654
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=4.3e-06 Score=69.11 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=73.3
Q ss_pred HHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----CcchhHHHHHHcCCCCCcE
Q 027904 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----EYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 107 ~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-----~~~~~~~l~~~~~I~~~Pt 181 (217)
+++|+... ++.-+++||.+-|++|.++.|.+..+++++.- .+..+.+|..- +.-.+..++++++|..+|+
T Consensus 142 ~~~i~~la--~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 142 EKAIQQLS--QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI---SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHH--hceeEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 34444432 56899999999999999999999999999863 34444444310 0012366899999999999
Q ss_pred EEEEE-CCEEEEEe--CCCCHHHHHHHHHHhccC
Q 027904 182 FHFYK-NGALVEAF--PTRDKERIDAAILKYTST 212 (217)
Q Consensus 182 ~~~~k-~G~~v~~~--~g~~~~~l~~~i~~~~~~ 212 (217)
++++. +.+....+ |-.+.++|.+-|...+..
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 99996 54555554 668999998887766543
No 149
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.45 E-value=1.7e-06 Score=59.81 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=57.5
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC--CCCcEEEEEECCEEEEEeCCCC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI--KTVPLFHFYKNGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I--~~~Pt~~~~k~G~~v~~~~g~~ 198 (217)
++.|..+||++|..+...|.++...+.+ +.+..+|+..+.....++...++- .++|.++ -+|+.+. .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~----i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ig-----G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD----FEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHVG-----G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC----CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEec-----C
Confidence 6779999999999999999988665443 778888884321224467777774 7899984 4776653 4
Q ss_pred HHHHHHHHHHhcc
Q 027904 199 KERIDAAILKYTS 211 (217)
Q Consensus 199 ~~~l~~~i~~~~~ 211 (217)
.++|.+++.+..+
T Consensus 71 ~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 CTDFEQLVKENFD 83 (86)
T ss_pred HHHHHHHHHhccc
Confidence 5788888887654
No 150
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.43 E-value=2.3e-06 Score=56.23 Aligned_cols=72 Identities=14% Similarity=0.269 Sum_probs=47.5
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~ 200 (217)
++.|+++||++|..+...+.+. ++.+..+|+..+.+...++.+..++.++|++++ +|+ .+.|.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHH
Confidence 5679999999999988877652 255666777221112233444447899999865 553 44677888
Q ss_pred HHHHHH
Q 027904 201 RIDAAI 206 (217)
Q Consensus 201 ~l~~~i 206 (217)
.|.++|
T Consensus 68 ~l~~~~ 73 (73)
T cd02976 68 KLRALL 73 (73)
T ss_pred HHHhhC
Confidence 887654
No 151
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.41 E-value=1.5e-06 Score=65.14 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCChh-hHHhHHHHHHHHHHhCCCC-CCEEEEEEEc
Q 027904 117 GSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGDQE-APVIFLKHNV 160 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~v~~~~Vd~ 160 (217)
+++++|.||++||++ |....+.+.++.+++.+.. .++.++.|..
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 789999999999998 9999999999999886532 2477777765
No 152
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.40 E-value=2e-06 Score=64.19 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------cchhHHHHHHcCCC
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------YDEQSEVAERLKIK 177 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------~~~~~~l~~~~~I~ 177 (217)
+++++|.|| +.||+.|....+.+.++..++... ++.++.|...+. .|....+.+.|++.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~ 99 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL 99 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCc
Confidence 789999999 789999999999999999988432 577777765221 12334677888887
Q ss_pred CCc---------EEEEEE-CCEEEEEeCC
Q 027904 178 TVP---------LFHFYK-NGALVEAFPT 196 (217)
Q Consensus 178 ~~P---------t~~~~k-~G~~v~~~~g 196 (217)
..| ++++++ +|+++....+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 666 677775 7988888744
No 153
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.35 E-value=6.4e-06 Score=68.37 Aligned_cols=91 Identities=18% Similarity=0.090 Sum_probs=69.2
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------------~~~~~~l~ 171 (217)
++.+++.|| +.||+.|....+.|.++.+++.+. ++.++.|.+.+. .|.+..++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 677888877 899999999999999999988653 455665554220 12345788
Q ss_pred HHcCCC-----CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027904 172 ERLKIK-----TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~-----~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~ 209 (217)
+.||+. ..|+.++++ +|++.... .+++.+++.+.|+..
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 999985 589999996 89888765 468999999888754
No 154
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.35 E-value=5.7e-06 Score=67.72 Aligned_cols=85 Identities=13% Similarity=0.204 Sum_probs=62.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc----------------------------------
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI---------------------------------- 161 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~---------------------------------- 161 (217)
+++..++.|.-+.||+|+++.+.+.++.+. ++.+..+...
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 478899999999999999999998887541 1333222110
Q ss_pred ------CCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHh
Q 027904 162 ------DEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 162 ------d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
..-+++..+++++||.++|+++ +.||+.+ .|..+.++|.++|++.
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 0013566889999999999988 7789876 3557899999999864
No 155
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.34 E-value=9e-06 Score=66.87 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----CcchhHHHHHHcCCCCCcE
Q 027904 107 FKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----EYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 107 ~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-----~~~~~~~l~~~~~I~~~Pt 181 (217)
+++|+... ++.-|++||.+.|++|..+.|.+..+++++.- .+.-+.+|..- +.-.+...+.+++|..+|+
T Consensus 135 ~~~i~~la--~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~---~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA 209 (248)
T PRK13703 135 RQAIAKLA--EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL---SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA 209 (248)
T ss_pred HHHHHHHH--hcceEEEEECCCCchhHHHHHHHHHHHHHhCC---eEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence 34444432 56889999999999999999999999999864 35555555311 0112345678999999999
Q ss_pred EEEEE-CCEEEEEe--CCCCHHHHHHHHHHhccC
Q 027904 182 FHFYK-NGALVEAF--PTRDKERIDAAILKYTST 212 (217)
Q Consensus 182 ~~~~k-~G~~v~~~--~g~~~~~l~~~i~~~~~~ 212 (217)
++++. +.+....+ |-.+.++|.+-|...+..
T Consensus 210 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 210 LMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 99996 44344444 668999998888766544
No 156
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.33 E-value=5e-06 Score=67.26 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027904 117 GSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------------~~~~~~l~~ 172 (217)
++. +|+.|+++||+.|....+.|.++..++... ++.++.|.+.+. .|....+++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 565 467999999999999999999999998653 467777765321 122346788
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027904 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~ 209 (217)
.||+. .+|+++++. +|++.... .+++.+++.+.|+.+
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 88873 689999996 88887664 368899999988765
No 157
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.33 E-value=5.8e-06 Score=66.89 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCeEE-EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027904 117 GSLVV-VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~vl-V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------------~~~~~~l~~ 172 (217)
++.++ +.|+++||+.|....+.|.++..++... ++.++.|.+.+. .|....+++
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 56555 4889999999999999999999998653 466776665221 112346778
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027904 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~ 209 (217)
.||+. .+|+.++++ +|++.... .|++.+++.+.|+.+
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88873 478888886 88887764 468999999999765
No 158
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.33 E-value=4.8e-06 Score=53.28 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=44.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
++.|+.+||++|+.....|++. ++.+-.+|+.++.+...++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5679999999999999888443 377888888443233445556669999999875 77654
No 159
>PRK13189 peroxiredoxin; Provisional
Probab=98.32 E-value=6.6e-06 Score=66.89 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHH
Q 027904 117 GSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAE 172 (217)
Q Consensus 117 ~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------------~~~~~~l~~ 172 (217)
++. +|+.||++||+.|....+.|.++..++... ++.++.|.+.+. .|....+++
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 664 456788999999999999999999988653 466666654221 123356788
Q ss_pred HcCCC-------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 173 RLKIK-------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 173 ~~~I~-------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
.||+. .+|+.++++ +|++.... .|++.+++.+.|+.+.
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 88875 578899996 88886654 4788999999887653
No 160
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.27 E-value=2.5e-05 Score=57.52 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=79.2
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
..+++.-+.+++|... .++.++|-|.-+|-+.|.++...+.+++++... -..++.||+ ++-+++.+.|.+.
T Consensus 3 ~~L~s~~~VDqAI~~e--~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi----~~Vpdfn~~yel~ 73 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSE--EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDI----DEVPDFNQMYELY 73 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEET----TTTHCCHHHTTS-
T ss_pred cccCccchHHHHHhcc--CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEc----ccchhhhcccccC
Confidence 4567889999999874 489999999999999999999999999999887 489999999 8899999999999
Q ss_pred CCcEEEEE-ECCEEEEEe-C----------CCCHHHHHHHHHHh
Q 027904 178 TVPLFHFY-KNGALVEAF-P----------TRDKERIDAAILKY 209 (217)
Q Consensus 178 ~~Pt~~~~-k~G~~v~~~-~----------g~~~~~l~~~i~~~ 209 (217)
-|..++| -+++.+.-. | -.+.+++...++-.
T Consensus 74 -dP~tvmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 74 -DPCTVMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp -SSEEEEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred -CCeEEEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 7775554 577766543 2 13467777766643
No 161
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.27 E-value=9.8e-06 Score=64.97 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=65.8
Q ss_pred eEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------------cchhHHHHHHcC
Q 027904 119 LVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------------YDEQSEVAERLK 175 (217)
Q Consensus 119 ~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------------~~~~~~l~~~~~ 175 (217)
.+|+.||++||+.|....+.|.++.+++.+. ++.++.|.+.+. .|....+++.|+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 4556899999999999999999999988653 467777765321 123457788999
Q ss_pred CC----C----CcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 176 IK----T----VPLFHFYK-NGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 176 I~----~----~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
+. + +|+.++++ +|++.... .+++.+++.+.|+.+-
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 75 2 34577775 88887665 2678899999887653
No 162
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.21 E-value=1.2e-05 Score=54.37 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=45.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-cchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-YDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
++.|+++||++|..+.+.+.++.. .+.++.++..++ .+....+.+..++.++|++ |-+|+.+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig 65 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG 65 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence 467999999999999999988754 266777776321 0112356677899999996 56777653
No 163
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.21 E-value=2.1e-05 Score=62.77 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=68.3
Q ss_pred CCeEEEEEEC-CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------------------cchhHHHH
Q 027904 117 GSLVVVDFYR-TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------------------YDEQSEVA 171 (217)
Q Consensus 117 ~k~vlV~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------------------~~~~~~l~ 171 (217)
++.++|.||+ .||+.|....+.+.++.+++... ++.++.|.+.+. .|...+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 7899999995 88999998889999999988754 566776665321 12345788
Q ss_pred HHcCCC------CCcEEEEEE-CCEEEEEe-----CCCCHHHHHHHHHHh
Q 027904 172 ERLKIK------TVPLFHFYK-NGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 172 ~~~~I~------~~Pt~~~~k-~G~~v~~~-----~g~~~~~l~~~i~~~ 209 (217)
+.|++. .+|+.++++ +|+++... .+++.+++.+.|+..
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 999985 468999896 88877664 357888888887754
No 164
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.21 E-value=1.6e-05 Score=53.90 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
.+.-++.|+.+||++|+.....|.+. ++.+..+|+..+ +...++....+...+|.++ -+|+.+. |
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~-~~~~~~~~~~g~~~vP~i~--i~g~~ig---G 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGND-ARGRSLRAVTGATTVPQVF--IGGKLIG---G 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCC-hHHHHHHHHHCCCCcCeEE--ECCEEEc---C
Confidence 44556779999999999999888643 356666777332 3345667778999999985 4787653 2
Q ss_pred CCHHHHHHHH
Q 027904 197 RDKERIDAAI 206 (217)
Q Consensus 197 ~~~~~l~~~i 206 (217)
.++|.++|
T Consensus 71 --~~~l~~~l 78 (79)
T TIGR02190 71 --SDELEAYL 78 (79)
T ss_pred --HHHHHHHh
Confidence 35666554
No 165
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.18 E-value=4.8e-05 Score=59.18 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=81.8
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCe-EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 96 CVREFKTDAEFFKILEKSKETGSL-VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~-vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
.+.++ |.+++..+... +.+ +++.|+.........+...+.++++.+.+ .+.|+.+|+ +..+.+++.+
T Consensus 78 ~v~~~-t~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~~f~~~d~----~~~~~~~~~~ 145 (184)
T PF13848_consen 78 LVPEL-TPENFEKLFSS----PKPPVLILFDNKDNESTEAFKKELQDIAKKFKG---KINFVYVDA----DDFPRLLKYF 145 (184)
T ss_dssp SCEEE-STTHHHHHHST----SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT---TSEEEEEET----TTTHHHHHHT
T ss_pred ccccc-chhhHHHHhcC----CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC---eEEEEEeeh----HHhHHHHHHc
Confidence 46666 67888888876 555 78888877788889999999999999887 699999999 7778899999
Q ss_pred CCC--CCcEEEEEE--CCEEEEE-eCCCCHHHHHHHHHH
Q 027904 175 KIK--TVPLFHFYK--NGALVEA-FPTRDKERIDAAILK 208 (217)
Q Consensus 175 ~I~--~~Pt~~~~k--~G~~v~~-~~g~~~~~l~~~i~~ 208 (217)
++. .+|++++++ +++.... .+..+.+.|.+|+++
T Consensus 146 ~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 146 GIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 998 899999997 4443222 266899999999874
No 166
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.17 E-value=7.9e-06 Score=64.78 Aligned_cols=106 Identities=20% Similarity=0.383 Sum_probs=88.7
Q ss_pred CcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH
Q 027904 94 VECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER 173 (217)
Q Consensus 94 ~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~ 173 (217)
.+-|.++.+.++|-+.|.... ..-.++|..|-+.-.-|-++...+.=|+..|+. +.|.++-. .+....++
T Consensus 137 ~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckiks-----s~~gas~~ 206 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKS-----SNTGASDR 206 (273)
T ss_pred cceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeee-----ccccchhh
Confidence 468899999999999998742 135678999999999999999999999999886 99999875 45567889
Q ss_pred cCCCCCcEEEEEECCEEEEEeC--------CCCHHHHHHHHHHh
Q 027904 174 LKIKTVPLFHFYKNGALVEAFP--------TRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~~Pt~~~~k~G~~v~~~~--------g~~~~~l~~~i~~~ 209 (217)
|...++|+++||++|+.|.-+. .....+|..||+++
T Consensus 207 F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 207 FSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred hcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999999999997752 24566888888876
No 167
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.16 E-value=2.5e-05 Score=71.77 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCeEEE-EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeC
Q 027904 117 GSLVVV-DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFP 195 (217)
Q Consensus 117 ~k~vlV-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~ 195 (217)
++++-| .|.++||++|......+++++...++ +..-.+|+ ...++++++|+|.++|++++ ||+.+.. |
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~----i~~~~i~~----~~~~~~~~~~~v~~vP~~~i--~~~~~~~-G 543 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN----VEAEMIDV----SHFPDLKDEYGIMSVPAIVV--DDQQVYF-G 543 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC----ceEEEEEC----cccHHHHHhCCceecCEEEE--CCEEEEe-e
Confidence 456544 55899999999999999999988664 88888899 88899999999999999775 6765533 6
Q ss_pred CCCHHHHHHHH
Q 027904 196 TRDKERIDAAI 206 (217)
Q Consensus 196 g~~~~~l~~~i 206 (217)
..+.++|..+|
T Consensus 544 ~~~~~~~~~~~ 554 (555)
T TIGR03143 544 KKTIEEMLELI 554 (555)
T ss_pred CCCHHHHHHhh
Confidence 56888888876
No 168
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.15 E-value=3.7e-05 Score=52.50 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=54.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~ 200 (217)
+..|..+||++|......|.+. ++.|-.+|+.++ .+..+..+..+...+|++++ ++. .+.|.+++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---------gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---------GFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHH
Confidence 5578899999999998888542 477888888322 22223334568889999854 443 34689999
Q ss_pred HHHHHHHHhccC
Q 027904 201 RIDAAILKYTST 212 (217)
Q Consensus 201 ~l~~~i~~~~~~ 212 (217)
+|.+++..+...
T Consensus 68 ~l~~~~~~~~~~ 79 (81)
T PRK10329 68 MINRLHPAPHAA 79 (81)
T ss_pred HHHHHHHhhhhh
Confidence 999998876543
No 169
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.05 E-value=7.5e-05 Score=52.17 Aligned_cols=93 Identities=26% Similarity=0.293 Sum_probs=69.6
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
.++.+.+++++.+.. ++.++|-|+.++|+ .....|.+++..+.+ .+.|+.+. +.++.+++++.
T Consensus 2 ~~i~s~~~l~~~~~~----~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~-------~~~~~~~~~~~ 64 (97)
T cd02981 2 KELTSKEELEKFLDK----DDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS-------DKEVAKKLKVK 64 (97)
T ss_pred eecCCHHHHHHHhcc----CCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC-------hHHHHHHcCCC
Confidence 456788888887765 78899999999998 466778888888865 48887654 35677778875
Q ss_pred CCcEEEEEECC--EEEEEeCCCCHHHHHHHHHH
Q 027904 178 TVPLFHFYKNG--ALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 178 ~~Pt~~~~k~G--~~v~~~~g~~~~~l~~~i~~ 208 (217)
. |++++|+.. ..+.+.|..+.+.|.+||..
T Consensus 65 ~-~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 65 P-GSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred C-CceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 4 899999753 33333366778999999874
No 170
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.05 E-value=3.6e-05 Score=50.06 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=43.7
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
++.|+++||++|+.+...|.+.. +.+..+|+.++.+...++.+..+...+|++ |.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 46789999999999998888763 456677774332234556666788889976 45887765
No 171
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.04 E-value=4.1e-05 Score=60.95 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=56.2
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC---------------------------------
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID--------------------------------- 162 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d--------------------------------- 162 (217)
+++..++.|+.+.|++|+.+.+.+.+. ..+ -.+.++.+....
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~---~~~--v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN---ADG--VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc---cCc--eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 368999999999999999999988761 111 012222221100
Q ss_pred ------CcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027904 163 ------EYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 163 ------~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i 206 (217)
..+.+..+++++||.++|+++ +.+|+.+. |..+.++|.++|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~~--G~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRVVP--GAPPAAQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeEec--CCCCHHHHHhhC
Confidence 013456889999999999997 88887742 445678887764
No 172
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.03 E-value=6.3e-05 Score=53.92 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhh---HHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSC---KYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C---~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~ 172 (217)
....+ +.++++..+.. +...++ |++..|.-+ ....=++-++.+.+++ .+..+.++- +....|..
T Consensus 10 g~~~v-d~~~ld~~l~~----~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~----~~e~~L~~ 76 (107)
T PF07449_consen 10 GWPRV-DADTLDAFLAA----PGDAVL-FFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVAR----AAERALAA 76 (107)
T ss_dssp TEEEE--CCCHHHHHHC----CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEH----HHHHHHHH
T ss_pred CCeee-chhhHHHHHhC----CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECc----hhHHHHHH
Confidence 34445 56778888876 455555 445555444 4444468888888887 577777776 78899999
Q ss_pred HcCCCCCcEEEEEECCEEEEEeCC-CCHH
Q 027904 173 RLKIKTVPLFHFYKNGALVEAFPT-RDKE 200 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k~G~~v~~~~g-~~~~ 200 (217)
+|++..+|+++||++|+.++.+.| .+.+
T Consensus 77 r~gv~~~PaLvf~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 77 RFGVRRWPALVFFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp HHT-TSSSEEEEEETTEEEEEEESSSTHH
T ss_pred HhCCccCCeEEEEECCEEEEEecCeeccc
Confidence 999999999999999999999855 4443
No 173
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.01 E-value=3e-05 Score=51.49 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=46.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
..|..+||++|+.....|.+. ++.|-.+|+..+ ....+...+.|..++|.+++ +|+ ..++|.+++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~-~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQ-PEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCC-HHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHH
Confidence 468899999999999888752 367777888322 12222233458889999643 443 2457888888
Q ss_pred HHHH
Q 027904 202 IDAA 205 (217)
Q Consensus 202 l~~~ 205 (217)
|.++
T Consensus 68 ~~~~ 71 (72)
T TIGR02194 68 LKAL 71 (72)
T ss_pred HHhc
Confidence 8764
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.97 E-value=8.9e-05 Score=67.55 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
+..-+-.|++++|++|......+++++...+ ++..-.+|. ...++++++|+|.++|++++ ||+.+ ..+.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~~-~~g~ 184 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDG----ALFQDEVEARNIMAVPTVFL--NGEEF-GQGR 184 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEc----hhCHhHHHhcCCcccCEEEE--CCcEE-EecC
Confidence 3445888999999999999999999988755 488989999 89999999999999999865 66544 3366
Q ss_pred CCHHHHHHHHHHhc
Q 027904 197 RDKERIDAAILKYT 210 (217)
Q Consensus 197 ~~~~~l~~~i~~~~ 210 (217)
...++|.+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~ 198 (517)
T PRK15317 185 MTLEEILAKLDTGA 198 (517)
T ss_pred CCHHHHHHHHhccc
Confidence 77788888877643
No 175
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.93 E-value=0.00015 Score=54.51 Aligned_cols=33 Identities=33% Similarity=0.746 Sum_probs=28.5
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
+.+..|+.|+.++|++|+.+.+.+.++...+.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 368899999999999999999999998776543
No 176
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.91 E-value=0.00016 Score=47.83 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=47.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~ 200 (217)
++.|..+||++|......|.+. ++.+..+|+..+ .....+....+...+|.+ |-+|+.+. ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~-~~~~~~~~~~g~~~vP~i--fi~g~~ig-----g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKD-ITGRSLRAVTGAMTVPQV--FIDGELIG-----GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCC-hhHHHHHHHhCCCCcCeE--EECCEEEe-----CHH
Confidence 5678999999999998888752 356667777332 233445566789999996 56777653 366
Q ss_pred HHHHHH
Q 027904 201 RIDAAI 206 (217)
Q Consensus 201 ~l~~~i 206 (217)
+|.++|
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 777765
No 177
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.88 E-value=0.00036 Score=53.12 Aligned_cols=85 Identities=26% Similarity=0.408 Sum_probs=64.1
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHh--CCCCCCEEEEEEEccCC-------------------------------
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGS--GDQEAPVIFLKHNVIDE------------------------------- 163 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~--~~~~~~v~~~~Vd~~d~------------------------------- 163 (217)
.+.+|+.|+...|++|..+.+.+.++.+++ .+ ++.|+.+++.-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~---~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 88 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG---KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQ 88 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT---TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC---ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 578999999999999999999999999988 44 688887764211
Q ss_pred ---------------------------------cchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHH
Q 027904 164 ---------------------------------YDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILK 208 (217)
Q Consensus 164 ---------------------------------~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~ 208 (217)
.......+++++|.++||+++ ||+.+ .+..+.++|.++|++
T Consensus 89 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~--~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 89 QENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV--VGPYTIEELKELIDK 162 (162)
T ss_dssp CHSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE--ETTTSHHHHHHHHHH
T ss_pred hhccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe--CCCCCHHHHHHHHcC
Confidence 001113456779999999887 99885 467899999999875
No 178
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.88 E-value=0.00023 Score=50.22 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEEE----CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027904 104 AEFFKILEKSKETGSLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+..++++.+ ..|+|+-. ++||++|......|.+. ++.|..+|+.++.+...++.+..|-..+
T Consensus 3 ~~v~~~i~~-----~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tv 68 (97)
T TIGR00365 3 ERIKEQIKE-----NPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTI 68 (97)
T ss_pred HHHHHHhcc-----CCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 444555554 45555443 38999999999888774 2556677874332334456666788899
Q ss_pred cEEEEEECCEEEE
Q 027904 180 PLFHFYKNGALVE 192 (217)
Q Consensus 180 Pt~~~~k~G~~v~ 192 (217)
|.+ |-+|+.+.
T Consensus 69 P~v--fi~g~~iG 79 (97)
T TIGR00365 69 PQL--YVKGEFVG 79 (97)
T ss_pred CEE--EECCEEEe
Confidence 986 46777664
No 179
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.81 E-value=0.00078 Score=49.11 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=74.6
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-chhHHHHHHcC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~-~~~~~l~~~~~ 175 (217)
.+.+ +.-+|+++|.. .+.++|.|=... |--.-...|.+++++......++.++.|.+.|.. .++.+|+++|+
T Consensus 6 ~v~L-D~~tFdKvi~k----f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~ 78 (126)
T PF07912_consen 6 CVPL-DELTFDKVIPK----FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYK 78 (126)
T ss_dssp SEEE-STTHHHHHGGG----SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT
T ss_pred eeec-cceehhheecc----CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhC
Confidence 3444 66789999987 799999997543 2223345678888332222457999999987742 35689999999
Q ss_pred C--CCCcEEEEEECC--EEEEE--eCCCCHHHHHHHHHHhcc
Q 027904 176 I--KTVPLFHFYKNG--ALVEA--FPTRDKERIDAAILKYTS 211 (217)
Q Consensus 176 I--~~~Pt~~~~k~G--~~v~~--~~g~~~~~l~~~i~~~~~ 211 (217)
| ..+|.+.+|.+| +++.. .+..+.+.|++|+..+.+
T Consensus 79 i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 79 IDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp -SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 9 668999999733 56655 466899999999998854
No 180
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.78 E-value=0.00026 Score=49.20 Aligned_cols=64 Identities=25% Similarity=0.370 Sum_probs=42.7
Q ss_pred CeEEEEEEC----CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 118 SLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 118 k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
.+|+|+-.. +||++|+.....|.+.. +.|..+|+..+.+...++.+..+-.++|.+ |.+|+.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG 75 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG 75 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 456654432 79999999998887752 456666663332334556666788899996 45787653
No 181
>PHA03050 glutaredoxin; Provisional
Probab=97.77 E-value=0.00017 Score=52.02 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=43.6
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-CcchhHHHHHHcCCCCCcEEEEEECCEEEEEe
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-EYDEQSEVAERLKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~ 194 (217)
++.|..+|||+|+.....|.+..-.... +..+.+|-.+ ..+...++.+..|..++|++ |-+|+.+..+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~----~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iGG~ 83 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA----YEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIGGY 83 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC----cEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEeCh
Confidence 5569999999999999888876432221 3444333211 11224556777788999997 4577776543
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.76 E-value=0.00019 Score=47.68 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=44.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
++.|+.+||++|+.+...|++. ++.+..+|+..+.+...++.+..+-..+|++ |-+|+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4568899999999999888863 3666677874332334567777788889986 56777665
No 183
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.75 E-value=0.00045 Score=57.22 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc--C-C-----------------------------
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI--D-E----------------------------- 163 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~--d-~----------------------------- 163 (217)
+.+.+|+.|.-+.|++|+++.+.+.++.+. . ++.+..+.+. . +
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-G----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-C----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 467889999999999999999988776543 1 2333333210 0 0
Q ss_pred --------------cchhHHHHHHcCCCCCcEEEEEE-CCEEEEEeCCCCHHHHHHHHH
Q 027904 164 --------------YDEQSEVAERLKIKTVPLFHFYK-NGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 164 --------------~~~~~~l~~~~~I~~~Pt~~~~k-~G~~v~~~~g~~~~~l~~~i~ 207 (217)
.+++..+.+++||+++|++++-+ +|+..-..|..++++|.+.|.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01234578889999999999886 464333335567888888764
No 184
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.75 E-value=0.0011 Score=49.26 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=78.3
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECC--CChh-h-HHhHHHHHHHHHHhCCCCCC-EEEEEEEccCCcchhHHH
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRT--SCGS-C-KYIEQGFSKLCKGSGDQEAP-VIFLKHNVIDEYDEQSEV 170 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~--wC~~-C-~~~~p~l~~l~~~~~~~~~~-v~~~~Vd~~d~~~~~~~l 170 (217)
.++++++.+.+++.=.. ++.-+|-|.-. -|.. + ..+...+.++++.+.+ + +.|+.+|. +....+
T Consensus 3 ~~~~l~~~~~~~~~C~~----~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg---k~i~Fv~vd~----~~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCEE----KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK---KPWGWLWTEA----GAQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhccC----CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEeC----cccHHH
Confidence 57888888877766544 45666666432 1222 3 4567789999999987 5 99999999 777779
Q ss_pred HHHcCCCC--CcEEEEEECCEEEEE-e-CCCCHHHHHHHHHHhccCC
Q 027904 171 AERLKIKT--VPLFHFYKNGALVEA-F-PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 171 ~~~~~I~~--~Pt~~~~k~G~~v~~-~-~g~~~~~l~~~i~~~~~~~ 213 (217)
.+.|||.+ +|+++++...+.... + +..+.+.|.+|+++++.-.
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 99999954 999999964322222 3 6689999999999998543
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.73 E-value=0.00023 Score=47.26 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=41.5
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC-CCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK-TVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~-~~Pt~~~~k~G~~v~ 192 (217)
++.|+.+||++|......|.+. ++.+..+|+..+.+...++.+..+.. ++|++ |-+|+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 4678899999999999888763 35666677733222334455666776 89976 46776653
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.72 E-value=0.00048 Score=62.81 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=66.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
+..-+-.|+++.|++|......+.+++...+. +..-.+|. ...++++++|+|.++|++++ ||+.+ ..+.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~----i~~~~id~----~~~~~~~~~~~v~~VP~~~i--~~~~~-~~g~ 185 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPN----ISHTMIDG----ALFQDEVEALGIQGVPAVFL--NGEEF-HNGR 185 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC----ceEEEEEc----hhCHHHHHhcCCcccCEEEE--CCcEE-EecC
Confidence 34557889999999999999999999887664 88888998 89999999999999999875 66544 3356
Q ss_pred CCHHHHHHHHHHh
Q 027904 197 RDKERIDAAILKY 209 (217)
Q Consensus 197 ~~~~~l~~~i~~~ 209 (217)
.+.+++.+.+.+.
T Consensus 186 ~~~~~~~~~l~~~ 198 (515)
T TIGR03140 186 MDLAELLEKLEET 198 (515)
T ss_pred CCHHHHHHHHhhc
Confidence 7778887777665
No 187
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.70 E-value=0.00016 Score=48.70 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=41.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
++.|+.+||++|......|++. ++.+-.+|+..+.....++.+..+..++|++ |-+|+.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 3568899999999999988763 2445555662221233455666688999996 45776553
No 188
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.70 E-value=6.7e-05 Score=53.21 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=39.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchh----HHHHHHcCCCCCcEEEEEECCEEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQ----SEVAERLKIKTVPLFHFYKNGALVEA 193 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~----~~l~~~~~I~~~Pt~~~~k~G~~v~~ 193 (217)
++.|..+||++|+++...|.+.. +.+..+|+..+ +.. ..+.+..+..++|.+ |-+|+.+..
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~-~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iGG 74 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKE-PAGKDIENALSRLGCSPAVPAV--FVGGKLVGG 74 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCC-ccHHHHHHHHHHhcCCCCcCeE--EECCEEEcC
Confidence 55689999999999998777652 33344555211 121 234455578899996 567766643
No 189
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.68 E-value=0.00055 Score=49.54 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=72.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHH---hCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKG---SGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~---~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~ 178 (217)
|.+++...... +.+..+.|+. -..-..+...+.+++++ +.+ ++.|+.+|. +......+.+|++.
T Consensus 5 t~e~~~~~~~~----~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~----~~~~~~~~~fgl~~ 71 (111)
T cd03072 5 TFENAEELTEE----GLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADG----DKFRHPLLHLGKTP 71 (111)
T ss_pred ccccHHHHhcC----CCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEec----hHhhhHHHHcCCCH
Confidence 66777777765 5555555662 22346788889999999 877 699999999 77666999999998
Q ss_pred --CcEEEEEECCE-EEEE-e-CCCCHHHHHHHHHHhcc
Q 027904 179 --VPLFHFYKNGA-LVEA-F-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 --~Pt~~~~k~G~-~v~~-~-~g~~~~~l~~~i~~~~~ 211 (217)
+|.+.+..... .... . +..+.+.|.+|+++++.
T Consensus 72 ~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 72 ADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred hHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99999986322 2222 3 45789999999999874
No 190
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.61 E-value=0.00057 Score=52.90 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
+++.|+.|+...|++|+.+.+.+.++.+++++
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 68899999999999999999999999888754
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=97.53 E-value=0.00057 Score=46.55 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=42.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
++.|..+||++|+.....|++. ++.+..+|+..+.+...++.+..+...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4568889999999999888763 2555667773322234566777788999976 45787665
No 192
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00058 Score=57.27 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=85.2
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECC----CChhhHHhHHHHHHHHHHhCCCC-----CCEEEEEEEccCCcc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRT----SCGSCKYIEQGFSKLCKGSGDQE-----APVIFLKHNVIDEYD 165 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~----wC~~C~~~~p~l~~l~~~~~~~~-----~~v~~~~Vd~~d~~~ 165 (217)
..|..+ +++.|...+... ..+-.++|.|.|. .|.-|+.+..++.-++..+.... .++-|..||. +
T Consensus 40 ~~VI~~-n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~----~ 113 (331)
T KOG2603|consen 40 SGVIRM-NDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDY----D 113 (331)
T ss_pred CCeEEe-cCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEec----c
Confidence 356666 789999999854 3466788888875 69999999999999988654322 2578999999 8
Q ss_pred hhHHHHHHcCCCCCcEEEEEE--CCEEEEEe------CCCCHHHHHHHHHHhc
Q 027904 166 EQSEVAERLKIKTVPLFHFYK--NGALVEAF------PTRDKERIDAAILKYT 210 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~k--~G~~v~~~------~g~~~~~l~~~i~~~~ 210 (217)
+.+++.+.++++.+|++++|. .|++.... -|..+|.+.+|++...
T Consensus 114 e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 114 ESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred ccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 899999999999999999993 44444221 2456899999998765
No 193
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.43 E-value=0.0025 Score=46.08 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=67.6
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECC---CChhhHHhHHHHHHHHHHhC-CCCCCEEEEEEEccCCcchhHHHHHHcCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRT---SCGSCKYIEQGFSKLCKGSG-DQEAPVIFLKHNVIDEYDEQSEVAERLKIK 177 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~---wC~~C~~~~p~l~~l~~~~~-~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~ 177 (217)
|.++...... .+.+++++-.. .-..-..+...+.++++.+. + ++.|+.+|. +......+.||++
T Consensus 5 ~~en~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~----~~~~~~l~~fgl~ 72 (111)
T cd03073 5 TKDNRAQFTK-----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADK----EDFSHELEEFGLD 72 (111)
T ss_pred ccchHHHhcc-----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcH----HHHHHHHHHcCCC
Confidence 5566666542 34444443232 23444678888999999998 6 599999999 7777789999998
Q ss_pred C----CcEEEEEECCEEEEEe-CCC-CHHHHHHHHHHhc
Q 027904 178 T----VPLFHFYKNGALVEAF-PTR-DKERIDAAILKYT 210 (217)
Q Consensus 178 ~----~Pt~~~~k~G~~v~~~-~g~-~~~~l~~~i~~~~ 210 (217)
. +|++.++......... +.. +.+.|.+|+++++
T Consensus 73 ~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 73 FSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred cccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 5 9999998632222223 456 8899999998763
No 194
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.35 E-value=0.0034 Score=44.20 Aligned_cols=102 Identities=15% Similarity=0.252 Sum_probs=74.8
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+..|.+..+|.+++.- ...|+|.|..+--..- .....+.++++...+ .-.++.|||.+ .+...||+++.|
T Consensus 3 ie~i~d~KdfKKLLRT----r~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG---~gT~~~vdCgd--~e~kKLCKKlKv 72 (112)
T cd03067 3 IEDISDHKDFKKLLRT----RNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKG---QGTIAWIDCGD--SESRKLCKKLKV 72 (112)
T ss_pred cccccchHHHHHHHhh----cCcEEEEEecchhhHH-HHHHHHHHHHHHhcC---ceeEEEEecCC--hHHHHHHHHHcc
Confidence 3456788999999986 6778887776543333 334578888888877 47888999954 567899999999
Q ss_pred C----CCcE-EEEEECCEEEEEe-CCCCHHHHHHHHHH
Q 027904 177 K----TVPL-FHFYKNGALVEAF-PTRDKERIDAAILK 208 (217)
Q Consensus 177 ~----~~Pt-~~~~k~G~~v~~~-~g~~~~~l~~~i~~ 208 (217)
. --|. +..|++|.....+ ...+...|..|+..
T Consensus 73 ~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 73 DPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCCCCCCcchhhcccCCCccccccchhhHHHHHHHhhC
Confidence 8 5554 4457899887666 45677888888763
No 195
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00054 Score=63.13 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=62.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-H--HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC---
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-F--SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--- 175 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~--- 175 (217)
+.+.|.++-.+ +||++|-...+||..|..|... | .++++.+.. .++-++||- ++-+++-+.|.
T Consensus 32 ~~eAf~~A~~e----dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDR----EERPDvD~~Ym~~~ 100 (667)
T COG1331 32 GEEAFAKAKEE----DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDR----EERPDVDSLYMNAS 100 (667)
T ss_pred CHHHHHHHHHh----CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeECh----hhccCHHHHHHHHH
Confidence 56667766665 9999999999999999998765 3 345665554 588899998 66666655553
Q ss_pred -----CCCCcEEEEEE-CCEEEEEe
Q 027904 176 -----IKTVPLFHFYK-NGALVEAF 194 (217)
Q Consensus 176 -----I~~~Pt~~~~k-~G~~v~~~ 194 (217)
--++|..+|+- +|++....
T Consensus 101 q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 101 QAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHhccCCCCceeEEECCCCceeeee
Confidence 56899999984 89887553
No 196
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.35 E-value=0.0015 Score=44.65 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=44.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc----------------------------hhHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD----------------------------EQSEVAE 172 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~----------------------------~~~~l~~ 172 (217)
++.|+.+.|++|..+.+.+.++.....+ ++.+..+.+.-... ....+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4679999999999999999998755444 45555443311101 1234677
Q ss_pred HcCCCCCcEEEEEE
Q 027904 173 RLKIKTVPLFHFYK 186 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k 186 (217)
++|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 89999999988754
No 197
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.34 E-value=0.0022 Score=51.48 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=29.4
Q ss_pred CCeEEEEEECCCChhhHHhHHHH---HHHHHHhCCCCCCEEEEE
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGF---SKLCKGSGDQEAPVIFLK 157 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~v~~~~ 157 (217)
+++-||+|+.-.|++|..+.+.+ ..+.+.+.+ ++.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~ 77 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTK 77 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEE
Confidence 46779999999999999999876 677777765 344444
No 198
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.28 E-value=0.0019 Score=50.97 Aligned_cols=104 Identities=17% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCcceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH
Q 027904 93 PVECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE 172 (217)
Q Consensus 93 ~~~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~ 172 (217)
..+.|.+| |..+|.+-+..|. .+-.|+|..|...-+-|.-+...++.++.+|++ +.|+++=.++- ..
T Consensus 89 kfG~V~~I-Sg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c-------Ip 155 (240)
T KOG3170|consen 89 KFGEVFPI-SGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC-------IP 155 (240)
T ss_pred cccceeec-cchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc-------cC
Confidence 34678888 6667766666654 378899999999999999999999999999987 89998754211 11
Q ss_pred HcCCCCCcEEEEEECCEEEEEe------CC--CCHHHHHHHHHHh
Q 027904 173 RLKIKTVPLFHFYKNGALVEAF------PT--RDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I~~~Pt~~~~k~G~~v~~~------~g--~~~~~l~~~i~~~ 209 (217)
.|-=.-+||+++|..|.+...+ || .+.+++..++-+.
T Consensus 156 NYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 156 NYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 2333568999999888665443 44 4677887776643
No 199
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.26 E-value=0.0021 Score=43.70 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECC---EEEEEeCCC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNG---ALVEAFPTR 197 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G---~~v~~~~g~ 197 (217)
++.|..+.|+-|..+...+..+.... .+.+-.||+ ++++++..+|+. .+|.+.+-..+ ....-....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI----~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~ 71 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDI----DEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRF 71 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEET----TTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEEC----CCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCC
Confidence 67899999999999999888865543 488999999 888889999995 89985542210 012222457
Q ss_pred CHHHHHHHHH
Q 027904 198 DKERIDAAIL 207 (217)
Q Consensus 198 ~~~~l~~~i~ 207 (217)
+.+.|.+||+
T Consensus 72 d~~~L~~~L~ 81 (81)
T PF05768_consen 72 DEEQLRAWLE 81 (81)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999999885
No 200
>PRK10824 glutaredoxin-4; Provisional
Probab=97.21 E-value=0.002 Score=46.87 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEEC----CCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYR----TSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT 178 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~ 178 (217)
.+..+++|.+ .+|+|+--. |||++|+.....|.++. +.+..+|+.++.+....+.+.-|-..
T Consensus 5 ~~~v~~~I~~-----~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~T 70 (115)
T PRK10824 5 IEKIQRQIAE-----NPILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPT 70 (115)
T ss_pred HHHHHHHHhc-----CCEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCC
Confidence 3445555554 445554332 69999999998887763 23333455222233344555567778
Q ss_pred CcEEEEEECCEEEEEe
Q 027904 179 VPLFHFYKNGALVEAF 194 (217)
Q Consensus 179 ~Pt~~~~k~G~~v~~~ 194 (217)
+|.+ |-+|+.++..
T Consensus 71 VPQI--FI~G~~IGG~ 84 (115)
T PRK10824 71 FPQL--WVDGELVGGC 84 (115)
T ss_pred CCeE--EECCEEEcCh
Confidence 8874 5688877543
No 201
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0022 Score=43.53 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=44.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcc-hhHHHHHHc-CCCCCcEEEEEECCEEEEEeCCCC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYD-EQSEVAERL-KIKTVPLFHFYKNGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~-~~~~l~~~~-~I~~~Pt~~~~k~G~~v~~~~g~~ 198 (217)
++.|..+||++|++....|.+. ++.|..+|+.+... +..+..++. |..++|.++ -+|+.+. ++.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~~ig--g~~d 69 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGKHVG--GCDD 69 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCEEEe--Cccc
Confidence 5668899999999999888732 46666667643321 223445555 789999865 4555322 3345
Q ss_pred HHHHH
Q 027904 199 KERID 203 (217)
Q Consensus 199 ~~~l~ 203 (217)
.+.+.
T Consensus 70 ~~~~~ 74 (80)
T COG0695 70 LDALE 74 (80)
T ss_pred HHHHH
Confidence 55543
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.04 E-value=0.01 Score=54.64 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.+.+... .+...++.|+.+.|..|..+...+++++.. .+ ++.+...|. ..+.+++++|++...|++
T Consensus 354 ~~~l~~~~~~l--~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~---~i~~~~~~~----~~~~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 354 RQQLVGIFGRL--ENPVTLLLFLDGSNEKSAELQSFLGEFASL-SE---KLNSEAVNR----GEEPESETLPKITKLPTV 423 (555)
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCchhhHHHHHHHHHHHhc-CC---cEEEEEecc----ccchhhHhhcCCCcCCEE
Confidence 34577777653 255567788888999999999999998864 33 588888887 778899999999999999
Q ss_pred EEEE-CCEE--EEEeC---CCCHHHHHHHHHHh
Q 027904 183 HFYK-NGAL--VEAFP---TRDKERIDAAILKY 209 (217)
Q Consensus 183 ~~~k-~G~~--v~~~~---g~~~~~l~~~i~~~ 209 (217)
.+++ +|+. +.++| |.....|...|...
T Consensus 424 ~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 424 ALLDDDGNYTGLKFHGVPSGHELNSFILALYNA 456 (555)
T ss_pred EEEeCCCcccceEEEecCccHhHHHHHHHHHHh
Confidence 9995 6543 44443 33334444444333
No 203
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.97 E-value=0.016 Score=41.24 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=64.8
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+.++.+.+++++.+.. ++.++|-|+..--. .+...|.+++..+.+ ++.|+... ...+...+++
T Consensus 2 ~~~i~s~~~l~~f~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~-------~~~~~~~~~~ 64 (104)
T cd03069 2 SVELRTEAEFEKFLSD----DDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS-------DKQLLEKYGY 64 (104)
T ss_pred ccccCCHHHHHHHhcc----CCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC-------hHHHHHhcCC
Confidence 4567788999998875 56666666665433 456778888888865 48887643 3567788888
Q ss_pred CCCcEEEEEEC--------CEEEEEeCCCCHHHHHHHHHHh
Q 027904 177 KTVPLFHFYKN--------GALVEAFPTRDKERIDAAILKY 209 (217)
Q Consensus 177 ~~~Pt~~~~k~--------G~~v~~~~g~~~~~l~~~i~~~ 209 (217)
.|++++|+. -..+.+.|..+.+.|.+||...
T Consensus 65 --~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 65 --GEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred --CCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 688888831 1222223557789999999864
No 204
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.95 E-value=0.023 Score=40.16 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=66.0
Q ss_pred eeecCCHHHHHHHHH-hhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 97 VREFKTDAEFFKILE-KSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~-~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
+..|.+.++++.++. . +..++|-|+..--. .....|.+++..+.+ .+.|+... ..++...++
T Consensus 2 v~~i~~~~~~e~~~~~~----~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~-------~~~~~~~~~ 64 (102)
T cd03066 2 VEIINSERELQAFENIE----DDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF-------DSKVAKKLG 64 (102)
T ss_pred ceEcCCHHHHHHHhccc----CCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC-------cHHHHHHcC
Confidence 467788999999997 5 56666666665443 355678888888855 47886543 346677887
Q ss_pred CCCCcEEEEEEC-CEEEEEe-C-CCCHHHHHHHHHHh
Q 027904 176 IKTVPLFHFYKN-GALVEAF-P-TRDKERIDAAILKY 209 (217)
Q Consensus 176 I~~~Pt~~~~k~-G~~v~~~-~-g~~~~~l~~~i~~~ 209 (217)
+. .|.++++++ ......+ + ..+.+.|.+||...
T Consensus 65 ~~-~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 65 LK-MNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CC-CCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 65 699999964 3333334 4 46899999999864
No 205
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.023 Score=43.59 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC-----------------cchhHHHHHHcCCC
Q 027904 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE-----------------YDEQSEVAERLKIK 177 (217)
Q Consensus 116 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~-----------------~~~~~~l~~~~~I~ 177 (217)
.++.|+++|| ..|++.|-...-.|.+...++... ++.++.|-..+. .|....+++.||+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 4889999999 788999988888888888777654 466666654211 35566788888873
Q ss_pred C------------CcEEEEE-ECCEEEEEeC----CCCHHHHHHHHHHhc
Q 027904 178 T------------VPLFHFY-KNGALVEAFP----TRDKERIDAAILKYT 210 (217)
Q Consensus 178 ~------------~Pt~~~~-k~G~~v~~~~----g~~~~~l~~~i~~~~ 210 (217)
. .++.+++ ++|++...+. .-..+++.+.|.++.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l~ 156 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKLA 156 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHhc
Confidence 3 4666666 4898887772 245667777777653
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=96.71 E-value=0.012 Score=47.26 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=40.7
Q ss_pred CeEEEEEE----CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 118 SLVVVDFY----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 118 k~vlV~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
.+|+|+-- .|||++|+++...|.+. ++.+..+|+.++.+....+.+..+-..+|.++ -+|+.++
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf--I~G~~IG 180 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSS---------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY--VNGELIG 180 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHc---------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--ECCEEEc
Confidence 44554333 37999999998888754 25666778843323334455555777888754 5777764
No 207
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.016 Score=41.37 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc-chhHHHHHHcCCCCCcEE
Q 027904 104 AEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY-DEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 104 ~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~-~~~~~l~~~~~I~~~Pt~ 182 (217)
+.+++++.+ .+|+ .|..+||++|..+...|.+ +.. ...++.+|-..+. +-...+.+--+-..+|.+
T Consensus 5 ~~v~~~i~~-----~~VV-ifSKs~C~~c~~~k~ll~~----~~v---~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v 71 (104)
T KOG1752|consen 5 AKVRKMISE-----NPVV-IFSKSSCPYCHRAKELLSD----LGV---NPKVVELDEDEDGSEIQKALKKLTGQRTVPNV 71 (104)
T ss_pred HHHHHHhhc-----CCEE-EEECCcCchHHHHHHHHHh----CCC---CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE
Confidence 445666654 3444 4899999999998887777 322 4678888763221 112233333456688874
Q ss_pred EEEECCEEEE
Q 027904 183 HFYKNGALVE 192 (217)
Q Consensus 183 ~~~k~G~~v~ 192 (217)
|-+|+.++
T Consensus 72 --FI~Gk~iG 79 (104)
T KOG1752|consen 72 --FIGGKFIG 79 (104)
T ss_pred --EECCEEEc
Confidence 46888774
No 208
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.65 E-value=0.029 Score=43.40 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEEC--CEEEEEeCC-CCHHHHHHHHHHhcc
Q 027904 135 IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKN--GALVEAFPT-RDKERIDAAILKYTS 211 (217)
Q Consensus 135 ~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~--G~~v~~~~g-~~~~~l~~~i~~~~~ 211 (217)
+...|.++++.+.+ .+.|+.+.- .++++++++.. |++++|++ ++.+.+.+. .+.+.|.+||....-
T Consensus 8 ~~~~f~~~A~~~~~---~~~F~~~~~-------~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 8 LFEIFEEAAEKLKG---DYQFGVTFN-------EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHTT---TSEEEEEE--------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcC---CcEEEEEcH-------HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 45678899999986 588988753 56899999999 99999986 445666665 799999999999876
Q ss_pred CCC
Q 027904 212 TTS 214 (217)
Q Consensus 212 ~~~ 214 (217)
|..
T Consensus 77 P~v 79 (184)
T PF13848_consen 77 PLV 79 (184)
T ss_dssp TSC
T ss_pred ccc
Confidence 643
No 209
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.64 E-value=0.016 Score=47.23 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=72.4
Q ss_pred CCCCCcceeecCCHH--HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC----
Q 027904 90 DLCPVECVREFKTDA--EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---- 163 (217)
Q Consensus 90 ~~~~~~~v~~i~s~~--~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---- 163 (217)
..+|...++.+.... .+-+..+ .++|++|+|.+-.||+=+.-.+.|.++++++.+ .+.|+.|-+...
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~----g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d---~adFl~VYI~EAHpsD 149 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAK----GNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD---VADFLIVYIEEAHPSD 149 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhcc----CCCCeEEEcccccchHHHHHHHHHHHHHHHhhh---hhheehhhHhhhCcCC
Confidence 345566777774332 2333333 389999999999999999999999999999987 345555543110
Q ss_pred ----------cchhH----------------------------HHHHHcCCCCCcE-EEEEECCEEEEEeC----CCCHH
Q 027904 164 ----------YDEQS----------------------------EVAERLKIKTVPL-FHFYKNGALVEAFP----TRDKE 200 (217)
Q Consensus 164 ----------~~~~~----------------------------~l~~~~~I~~~Pt-~~~~k~G~~v~~~~----g~~~~ 200 (217)
...+. .....|+ ++|. +.++++|+++..-| +.+.+
T Consensus 150 gW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~ 227 (237)
T PF00837_consen 150 GWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPE 227 (237)
T ss_pred CccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHH
Confidence 00111 1122222 4676 44558998776652 47899
Q ss_pred HHHHHHHHh
Q 027904 201 RIDAAILKY 209 (217)
Q Consensus 201 ~l~~~i~~~ 209 (217)
++++||+++
T Consensus 228 e~r~~L~~~ 236 (237)
T PF00837_consen 228 ELREWLEKY 236 (237)
T ss_pred HHHHHHHhc
Confidence 999999985
No 210
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.21 E-value=0.016 Score=51.47 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=40.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHH---------cCCCCCcEEEEEECCEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAER---------LKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~---------~~I~~~Pt~~~~k~G~~v 191 (217)
++.|..+||++|+..+..|.+. ++.+-.+|+.++ ....++..+ .|..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~-~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDD-VKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCC-hhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 5679999999999998888774 367777888322 222233222 46788999854 67655
Q ss_pred E
Q 027904 192 E 192 (217)
Q Consensus 192 ~ 192 (217)
.
T Consensus 72 g 72 (410)
T PRK12759 72 G 72 (410)
T ss_pred e
Confidence 4
No 211
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.75 E-value=0.03 Score=42.79 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred CeEEEEEECCCChhhHHh-HHHHHHHHHHhCCCCCCE-EEEEEEc
Q 027904 118 SLVVVDFYRTSCGSCKYI-EQGFSKLCKGSGDQEAPV-IFLKHNV 160 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~-~p~l~~l~~~~~~~~~~v-~~~~Vd~ 160 (217)
..+|+.|.+.||+.|... .+.|.+...++... ++ .++.|..
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~ 73 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSV 73 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEEC
Confidence 344455559999999998 88899888887643 33 3454543
No 212
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.72 E-value=0.41 Score=34.15 Aligned_cols=95 Identities=9% Similarity=0.113 Sum_probs=61.5
Q ss_pred eeecCCHHHHHHHHHhhhcCC-CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC
Q 027904 97 VREFKTDAEFFKILEKSKETG-SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK 175 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~-k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~ 175 (217)
+.+|.+.++++..+.. . +.++|-|+..--+ .....|.+++..+.+ .+.|+...- ..+..+++
T Consensus 2 v~~i~s~~ele~f~~~----~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~~-------~~~~~~~~ 64 (107)
T cd03068 2 SKQLQTLKQVQEFLRD----GDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTFD-------SEIFKSLK 64 (107)
T ss_pred ceEcCCHHHHHHHHhc----CCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEECh-------HHHHHhcC
Confidence 4677899999998876 4 6777767665433 456678888888865 588866433 46777888
Q ss_pred CCCCcEEEEEEC--------CEEEEEeCC-CCH-HHHHHHHHHh
Q 027904 176 IKTVPLFHFYKN--------GALVEAFPT-RDK-ERIDAAILKY 209 (217)
Q Consensus 176 I~~~Pt~~~~k~--------G~~v~~~~g-~~~-~~l~~~i~~~ 209 (217)
+. .|.+++|+. -....+-+. ... ++|.+||.++
T Consensus 65 ~~-~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 65 VS-PGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CC-CCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 76 466777721 122222222 344 4499999753
No 213
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.17 E-value=0.13 Score=40.10 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.7
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCC
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
.|.-|+|++|-.+.|.+.++..++..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999886
No 214
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.14 E-value=0.26 Score=43.31 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=69.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HHH-HHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 105 EFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FSK-LCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 105 ~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~~-l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
++-++|..++. ++.++|.|-+.-......|... |.. ..... ....++-++|+... .....+..-|-+..+|++
T Consensus 7 nipeAIa~aK~-kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~--ls~~fVaIkiqags--~aa~qFs~IYp~v~vPs~ 81 (506)
T KOG2507|consen 7 NIPEAIAEAKG-KKALFVVYISGDDEESDKLNRLTWTDASVSDS--LSKYFVAIKIQAGS--VAATQFSAIYPYVSVPSI 81 (506)
T ss_pred chHHHHHHhhc-CCeEEEEEEecCchHhhHHhhccchhhhhhhh--hhcceEEEEeccCc--hhhhhhhhhcccccccce
Confidence 45567777764 5666666777777777777732 332 22211 12246777777632 455678889999999999
Q ss_pred EEE-ECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 183 HFY-KNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 183 ~~~-k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
+|+ +.|.++... |....++|..-|++..
T Consensus 82 ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 82 FFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 999 699999998 4467888888777653
No 215
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.04 E-value=1.1 Score=33.66 Aligned_cols=100 Identities=6% Similarity=0.152 Sum_probs=66.5
Q ss_pred HHHHHHHhh----hcCCCeEEEEEECCCCh----hhHHhH--HHHHHHHHHhCCCCCCEEEEEEEccCCcch--------
Q 027904 105 EFFKILEKS----KETGSLVVVDFYRTSCG----SCKYIE--QGFSKLCKGSGDQEAPVIFLKHNVIDEYDE-------- 166 (217)
Q Consensus 105 ~f~~~l~~a----~~~~k~vlV~F~a~wC~----~C~~~~--p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~-------- 166 (217)
.|.++++.| +++.|+++|+.+.+--. .|+... +.+.+..+ . ++.+..-|+++....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~---~---nfv~Wg~dvt~~~~~~~fl~~~~ 78 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS---Q---NFITWGWDMTKESNKARFLSSCT 78 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH---c---CEEEEeeeccchhhhhHHHHhhh
Confidence 466677776 77899999999998764 444432 22333322 2 577777888542110
Q ss_pred ------hHHHHHHcCCCCCcEEEEEE-CC---EEEEEe-CCCCHHHHHHHHHHhc
Q 027904 167 ------QSEVAERLKIKTVPLFHFYK-NG---ALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 167 ------~~~l~~~~~I~~~Pt~~~~k-~G---~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
.....+.++...+|.+.++- .. .++.++ |..++++|...|....
T Consensus 79 ~~~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 79 RHFGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred hhhhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 22346678899999999983 22 566666 6689999998887654
No 216
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.87 E-value=0.11 Score=39.52 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=40.4
Q ss_pred EEEEECC------CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC----CCCcEEEEEECCEE
Q 027904 121 VVDFYRT------SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI----KTVPLFHFYKNGAL 190 (217)
Q Consensus 121 lV~F~a~------wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I----~~~Pt~~~~k~G~~ 190 (217)
+|.|+++ +|++|+.+...|+.+ ++.|-.+|+..+.+...+|.+.++- ..+|.++ -+|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEE
Confidence 3445566 999999999888764 3677788883322334456666665 6778744 56766
Q ss_pred EEE
Q 027904 191 VEA 193 (217)
Q Consensus 191 v~~ 193 (217)
+.-
T Consensus 71 IGG 73 (147)
T cd03031 71 LGG 73 (147)
T ss_pred Eec
Confidence 653
No 217
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=94.81 E-value=0.028 Score=39.95 Aligned_cols=79 Identities=9% Similarity=0.092 Sum_probs=46.4
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE-CCEEEEEe-----C
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK-NGALVEAF-----P 195 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k-~G~~v~~~-----~ 195 (217)
..|+.++|++|+.....|++. ++.|-.+|+.++.....++.+-++-.+.+.--++. .|...... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH---------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 468899999999998777763 25566666643323344444444444433333442 43333222 3
Q ss_pred CCCHHHHHHHHHHh
Q 027904 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 g~~~~~l~~~i~~~ 209 (217)
..+.+++.++|.++
T Consensus 73 ~ls~~e~~~~l~~~ 86 (105)
T cd02977 73 ELSDEEALELMAEH 86 (105)
T ss_pred CCCHHHHHHHHHhC
Confidence 56778888887764
No 218
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.66 E-value=0.48 Score=31.35 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
..++.++|+.|++..-.+.... +.+-.+++........++.+...-..+|+++.-.+|..+ .+...
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g---------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~~ 68 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE---------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESAD 68 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC---------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHHH
Confidence 4567789999998876665542 333334542211123455555566789987532245443 35667
Q ss_pred HHHHHHHh
Q 027904 202 IDAAILKY 209 (217)
Q Consensus 202 l~~~i~~~ 209 (217)
|.++|++.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 77777653
No 219
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.60 E-value=0.3 Score=32.10 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=44.3
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE--CCEEEEEeCCCC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK--NGALVEAFPTRD 198 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k--~G~~v~~~~g~~ 198 (217)
+..|+.++|+.|++..-.+....- .+.+..+|. ....++ ..-+...+|+++.-. +|..+. +
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi-------~y~~~~~~~----~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----e 64 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI-------PYEVVEVNP----VSRKEI-KWSSYKKVPILRVESGGDGQQLV-----D 64 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-------ceEEEECCc----hhHHHH-HHhCCCccCEEEECCCCCccEEE-----c
Confidence 345778999999998865555422 133333333 222334 334567899887542 354443 6
Q ss_pred HHHHHHHHHHhcc
Q 027904 199 KERIDAAILKYTS 211 (217)
Q Consensus 199 ~~~l~~~i~~~~~ 211 (217)
...|.++|++.++
T Consensus 65 S~~I~~yL~~~~~ 77 (77)
T cd03040 65 SSVIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHHHcC
Confidence 6778888887764
No 220
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.30 E-value=0.015 Score=49.02 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=68.5
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
..++-+.||+.||+..+..+|.+.-....+.. +....++ +....+.+..+|++.+.|++.+...--...+.+.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~ve---e~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVE---ESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc----cccccHH---HHhhcccchhccccccCCcceeeccccchhhccc
Confidence 56788999999999999999999888777653 3333322 2245567889999999999998876555566678
Q ss_pred CCHHHHHHHHHHhcc
Q 027904 197 RDKERIDAAILKYTS 211 (217)
Q Consensus 197 ~~~~~l~~~i~~~~~ 211 (217)
++...|++|..+.+.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 899999999988875
No 221
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.47 E-value=0.06 Score=38.76 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=46.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEE-CCEEEEEe------
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYK-NGALVEAF------ 194 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k-~G~~v~~~------ 194 (217)
..|+.++|+.|++....|++. ++.|-.+|+..+.....++..-++..+.|.--+++ .|......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccccc
Confidence 468899999999998777763 35666667643333444555444445556555553 44433222
Q ss_pred CCCCHHHHHHHHHHh
Q 027904 195 PTRDKERIDAAILKY 209 (217)
Q Consensus 195 ~g~~~~~l~~~i~~~ 209 (217)
.+.+.+++.++|.++
T Consensus 73 ~~~s~~e~~~~l~~~ 87 (111)
T cd03036 73 PSLSEEEALELLSSD 87 (111)
T ss_pred ccCCHHHHHHHHHhC
Confidence 234556677776654
No 222
>PHA03075 glutaredoxin-like protein; Provisional
Probab=92.49 E-value=0.58 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=28.6
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
|.++|.|..|.|+-|......+.++..+ +.+++||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 5688999999999999999888666554 45666665
No 223
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=92.39 E-value=0.61 Score=30.10 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=37.7
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHH
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l 202 (217)
.++.++|++|++..-.+....- .+..+.++. .......+..+-..+|+++ ..+|..+. +...|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl-------~~~~~~~~~----~~~~~~~~~~~~~~vP~L~-~~~~~~l~-----es~aI 65 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI-------PVEQIILQN----DDEATPIRMIGAKQVPILE-KDDGSFMA-----ESLDI 65 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC-------CeEEEECCC----CchHHHHHhcCCCccCEEE-eCCCeEee-----hHHHH
Confidence 4678899999987765554322 234444443 3222333444556789874 34465443 44556
Q ss_pred HHHHH
Q 027904 203 DAAIL 207 (217)
Q Consensus 203 ~~~i~ 207 (217)
.++|+
T Consensus 66 ~~yL~ 70 (71)
T cd03037 66 VAFID 70 (71)
T ss_pred HHHHh
Confidence 66554
No 224
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=92.31 E-value=1.9 Score=31.07 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
-.+.+.+.+.++.+.+-++++.=+.+ + .+.+.+..+.+-....... ..+ .-++.+.++|+|+.+|+
T Consensus 9 P~~~L~~l~~~a~~~~~~~V~RG~~~--g---~~~~t~~~~~~l~~~~~~~---~~v------~IdP~~F~~y~I~~VPa 74 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVVFRGFPD--G---SFKPTAKAIQELLRKDDPC---PGV------QIDPRLFRQYNITAVPA 74 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEEEECCCC--C---CHHHHHHHHHHHhhccCCC---cce------eEChhHHhhCCceEcCE
Confidence 46788888888765543333322222 2 5555555554444331112 233 34588999999999999
Q ss_pred EEEEEC
Q 027904 182 FHFYKN 187 (217)
Q Consensus 182 ~~~~k~ 187 (217)
+++.++
T Consensus 75 ~V~~~~ 80 (113)
T PF09673_consen 75 FVVVKD 80 (113)
T ss_pred EEEEcC
Confidence 999887
No 225
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=92.05 E-value=3.8 Score=30.34 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=58.6
Q ss_pred ceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhH-HhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 96 CVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCK-YIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 96 ~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~-~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
.+.+++|.++.++++... ....+|.. .+-||=-- ..+|-....... .. . .=.++.|=...+.+.. +-++.|
T Consensus 17 Gf~eL~T~e~Vd~~~~~~---~GTtlVvV-NSVCGCAag~ARPa~~~al~~-~k-k-PD~lvTVFAGqDkEAt-~~aR~y 88 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNK---EGTTLVVV-NSVCGCAAGNARPAAAMALQN-DK-K-PDHLVTVFAGQDKEAT-AKAREY 88 (136)
T ss_dssp T-EE--SHHHHHHHHHH-----SEEEEEE-E-SSHHHHHTHHHHHHHHHHH-SS----SEEEEEETTTSHHHH-HHHHHT
T ss_pred CccccCCHHHHHHHHhCC---CCcEEEEE-eccccccccccCHHHHHHHhC-CC-C-CCceEEeccCCCHHHH-HHHHHh
Confidence 578889999999999952 45555544 56686332 234443333222 21 1 1245555442221222 334454
Q ss_pred CC---CCCcEEEEEECCEEEEEe-----CCCCHHHHHHHHHHhc
Q 027904 175 KI---KTVPLFHFYKNGALVEAF-----PTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I---~~~Pt~~~~k~G~~v~~~-----~g~~~~~l~~~i~~~~ 210 (217)
=. .+-|++.+||+|+.++.+ .|++.+.|..-|....
T Consensus 89 f~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 89 FEPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp STTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHH
T ss_pred cCCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHH
Confidence 32 466999999999999876 5888888877776543
No 226
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=92.02 E-value=2 Score=31.89 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcE
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPL 181 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt 181 (217)
-.+.+.+.+.++.+.+.++++.=+-.. .+.+....+.+-.... .. ..+ .-++.+.++|+|+.+|+
T Consensus 10 P~~~Lk~l~~~a~~~g~~~VlRG~~~~-----~~~~T~~~i~~L~~~~-~~---~~v------~IdP~lF~~f~I~~VPa 74 (130)
T TIGR02742 10 PEPLLKQLLDQAEALGAPLVIRGLLDN-----GFKATATRIQSLIKDG-GK---SGV------QIDPQWFKQFDITAVPA 74 (130)
T ss_pred CHHHHHHHHHHHHHhCCeEEEeCCCCC-----CHHHHHHHHHHHHhcC-CC---CcE------EEChHHHhhcCceEcCE
Confidence 356777888777665665554333332 2334444443333221 11 223 34588999999999999
Q ss_pred EEEEECCE-----------EEEEe-CCCCHHHHHHHHH
Q 027904 182 FHFYKNGA-----------LVEAF-PTRDKERIDAAIL 207 (217)
Q Consensus 182 ~~~~k~G~-----------~v~~~-~g~~~~~l~~~i~ 207 (217)
+++.+++. ..... |..+.+.-.+.+.
T Consensus 75 ~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 75 FVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred EEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 99998774 23333 5565555555554
No 227
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.91 E-value=0.51 Score=34.16 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=42.1
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHH---HHHHcCCCCCcEEEEE-ECCEEEEEe---
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSE---VAERLKIKTVPLFHFY-KNGALVEAF--- 194 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~---l~~~~~I~~~Pt~~~~-k~G~~v~~~--- 194 (217)
..|+.++|+.|+.....+++. ++.+-.+|+.++.....+ +....+. ..--++ +.|......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCch
Confidence 358899999999998777762 356666776332222233 3444442 111233 355443332
Q ss_pred ---CCCCHHHHHHHHHHh
Q 027904 195 ---PTRDKERIDAAILKY 209 (217)
Q Consensus 195 ---~g~~~~~l~~~i~~~ 209 (217)
...+.+++.++|.++
T Consensus 70 ~~~~~ls~~e~~~~i~~~ 87 (117)
T TIGR01617 70 NTFLDLSDKEALELLAED 87 (117)
T ss_pred hhcccCCHHHHHHHHHhC
Confidence 234556666666653
No 228
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=90.62 E-value=1.4 Score=29.22 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=46.6
Q ss_pred EEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEE
Q 027904 120 VVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHF 184 (217)
Q Consensus 120 vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~ 184 (217)
.+..|-+..-+..+.....+.++.+++.+ ..+.+--||+ .+++++++.++|-++||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDV----LKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEc----ccCHhHHhhCCEEEechhhh
Confidence 44556666668888888888888887642 2688888999 89999999999999999763
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=90.60 E-value=0.83 Score=29.52 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=37.8
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
+.|+.+||++|++..-.+....- .+.+..+|.. +...++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-------~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-------TVELREVELK---NKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-------CcEEEEeCCC---CCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 35788999999988765554422 3566666652 22356666667788999852 346654
No 230
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=90.53 E-value=2.4 Score=35.09 Aligned_cols=96 Identities=17% Similarity=0.310 Sum_probs=60.4
Q ss_pred CCeEEEEEECCCChh-hHHhHHHHHHHHHHhCC---CCCCEEEEEEEccCC----------------------cchhHHH
Q 027904 117 GSLVVVDFYRTSCGS-CKYIEQGFSKLCKGSGD---QEAPVIFLKHNVIDE----------------------YDEQSEV 170 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~-C~~~~p~l~~l~~~~~~---~~~~v~~~~Vd~~d~----------------------~~~~~~l 170 (217)
|+.++++|.=+.||. |=.....+.+...++.. ...--.|+.||-.-+ .++-..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 899999999999974 54333333333333222 111126778874211 2345567
Q ss_pred HHHcCCCCCc-------------EEEEE---ECCEEEEEeC-CCCHHHHHHHHHHhccC
Q 027904 171 AERLKIKTVP-------------LFHFY---KNGALVEAFP-TRDKERIDAAILKYTST 212 (217)
Q Consensus 171 ~~~~~I~~~P-------------t~~~~---k~G~~v~~~~-g~~~~~l~~~i~~~~~~ 212 (217)
|++|.|-.-+ ++++| .+|+.++.+| ..+++++.+-|.++..+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 8888774332 34444 3899999995 58999999999887644
No 231
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=3.7 Score=33.32 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 166 EQSEVAERLKIKTVPLFHFYKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
.+..++.++||.++||+++- |+ .+ |..+.++|.+.|....
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHHHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 34567889999999997763 33 33 4456889988887653
No 232
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.87 E-value=0.21 Score=37.06 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
+..|+.+||+.|+.....|++. ++.|-.+|+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---------gi~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---------DIPFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEeec
Confidence 4568899999999988776654 245555665
No 233
>PRK12559 transcriptional regulator Spx; Provisional
Probab=89.62 E-value=0.35 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.8
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.++|+.|+.....|++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988766654
No 234
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=89.50 E-value=2.8 Score=26.95 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=37.5
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
..|+.++|+.|+...-.+....- .+....+|..+.....+++.+......+|++. .+|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi-------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 62 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL-------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV--DNGFVL 62 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC-------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE--ECCEEE
Confidence 35789999999987766655422 24555566422112335666666667899985 356544
No 235
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.27 E-value=0.38 Score=34.73 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=22.8
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~ 161 (217)
+..|+.++|+.|+.....|++. ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~---------gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH---------QIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCceEEEecC
Confidence 3467899999999988777763 2455556653
No 236
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.83 E-value=4.4 Score=25.85 Aligned_cols=70 Identities=10% Similarity=0.021 Sum_probs=41.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHH
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
..|+.++|+.|++..-.++...- .+....+|.. ...+++.+......+|++. .+|..+ .....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi-------~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~--~~~~~l-----~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV-------SVEIIDVDPD---NPPEDLAELNPYGTVPTLV--DRDLVL-----YESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC-------ccEEEEcCCC---CCCHHHHhhCCCCCCCEEE--ECCEEE-----EcHHH
Confidence 45788999999998766654422 2444445541 2234555555667899764 455443 24556
Q ss_pred HHHHHHH
Q 027904 202 IDAAILK 208 (217)
Q Consensus 202 l~~~i~~ 208 (217)
|.++|++
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 6666654
No 237
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=1.3 Score=29.56 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=37.7
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC----------cchhHH--HHHHcCCCCCcEEEEEECCE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE----------YDEQSE--VAERLKIKTVPLFHFYKNGA 189 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~----------~~~~~~--l~~~~~I~~~Pt~~~~k~G~ 189 (217)
+.|++..||.|..+...++++.-. +-.|+++.. .|..++ -++..|--++|.+++ .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~---------yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD---------YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC---------ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 569999999999888877776332 333343211 122222 255677789999754 5666
Q ss_pred EEE
Q 027904 190 LVE 192 (217)
Q Consensus 190 ~v~ 192 (217)
++-
T Consensus 75 vVl 77 (85)
T COG4545 75 VVL 77 (85)
T ss_pred EEE
Confidence 553
No 238
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.35 E-value=1.5 Score=28.08 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=37.1
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
..|+.++|++|++..-.+....- .+....++........+++.+......+|++.. .+|..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~l 63 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTVI 63 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCEE
Confidence 35778899999998876665522 244455554211112345666666678999864 355443
No 239
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.26 E-value=6.8 Score=27.27 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++...++.- .+...++.|..+. ..|..+...+++++..-+ ++.+...+. +. ..|++
T Consensus 7 ~~qL~~~f~~l--~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd----kI~~~~~~~----~~-----------~~P~~ 64 (94)
T cd02974 7 KQQLKAYLERL--ENPVELVASLDDS-EKSAELLELLEEIASLSD----KITLEEDND----DE-----------RKPSF 64 (94)
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC----ceEEEEecC----CC-----------CCCEE
Confidence 45667777653 2444455565555 999999998888888543 466644333 11 47999
Q ss_pred EEEECCEE
Q 027904 183 HFYKNGAL 190 (217)
Q Consensus 183 ~~~k~G~~ 190 (217)
.+..+|+.
T Consensus 65 ~i~~~~~~ 72 (94)
T cd02974 65 SINRPGED 72 (94)
T ss_pred EEecCCCc
Confidence 99887643
No 240
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.13 E-value=5.4 Score=25.96 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=50.1
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~ 203 (217)
++.++|+.|++..=.+....- .+.+..++.. +....+.+...-..+|++. .+|..+. +...|.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i-------~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~ 64 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI-------PYELVPVDPE---EKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAII 64 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE-------EEEEEEEBTT---STSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC-------eEEEeccCcc---cchhHHHhhcccccceEEE--ECCEEEe-----CHHHHH
Confidence 678999999998755444321 2455555541 3356677777788899987 6788665 778899
Q ss_pred HHHHHhccC
Q 027904 204 AAILKYTST 212 (217)
Q Consensus 204 ~~i~~~~~~ 212 (217)
++|++....
T Consensus 65 ~yL~~~~~~ 73 (75)
T PF13417_consen 65 EYLEERYPG 73 (75)
T ss_dssp HHHHHHSTS
T ss_pred HHHHHHcCC
Confidence 999887654
No 241
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.11 E-value=1.5 Score=35.60 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=32.9
Q ss_pred HHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhccCCC
Q 027904 169 EVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 169 ~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~~~~ 214 (217)
..+++.||+++|+|+| .+| ..-.|...++.+...|++.++...
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~--~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK--YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE-cCc--EeecCCCCHHHHHHHHHHHHhccc
Confidence 4678999999999999 332 222367899999999999886654
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=87.16 E-value=1.5 Score=33.92 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=28.9
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027904 166 EQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~ 207 (217)
++...+.++||.++|++++ +|+ ....|....+.|.+.|+
T Consensus 155 ~~~~~a~~~gv~GvP~~vv--~g~-~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 155 EDTAEARQLGVFGVPTFVV--NGK-YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHTTCSSSSEEEE--TTT-EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCcccCEEEE--CCE-EEEECCCCHHHHHHHhC
Confidence 4456678999999999999 777 22236678888887764
No 243
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.58 E-value=1.6 Score=30.98 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=40.5
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc---chhHHHHHHcCCCCCcEEEEE-ECCEEEEEeC--
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEVAERLKIKTVPLFHFY-KNGALVEAFP-- 195 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~---~~~~~l~~~~~I~~~Pt~~~~-k~G~~v~~~~-- 195 (217)
..|+.+||+.|+.....|.+- ++.|-.+|+..+. ++-..+..++|+ --++ +.|......+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~p~s~~eL~~~l~~~g~-----~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKDGLDAATLERWLAKVGW-----ETLLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccCCCCHHHHHHHHHHhCh-----HHHHccCchHHHhCChh
Confidence 468899999999988777654 2445555553321 233445555553 1233 3443333321
Q ss_pred ---CCCHHHHHHHHHHh
Q 027904 196 ---TRDKERIDAAILKY 209 (217)
Q Consensus 196 ---g~~~~~l~~~i~~~ 209 (217)
..+.+++.++|.++
T Consensus 68 ~~~~~s~~e~~~~l~~~ 84 (105)
T cd03035 68 QKAALDAAKAIALMLEH 84 (105)
T ss_pred hhccCCHHHHHHHHHhC
Confidence 23445666666543
No 244
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=9.4 Score=30.31 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC-----------C-----------cchhHHHHHH
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID-----------E-----------YDEQSEVAER 173 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d-----------~-----------~~~~~~l~~~ 173 (217)
++.+++.|| ++.-.-|-.....+.+...+++.++-.+.-+.+|-.- . .|...++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 577888887 5555666555556666666666543334444444100 0 2456789999
Q ss_pred cCCCC------CcEEEEE-ECCEEEEEe-----CCCCHHHHHHHHHHh
Q 027904 174 LKIKT------VPLFHFY-KNGALVEAF-----PTRDKERIDAAILKY 209 (217)
Q Consensus 174 ~~I~~------~Pt~~~~-k~G~~v~~~-----~g~~~~~l~~~i~~~ 209 (217)
||+-. +=.++++ .+|.+.... .|++.+++.+.|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 98843 2234444 477665543 489999999888755
No 245
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=85.63 E-value=4.1 Score=31.60 Aligned_cols=45 Identities=31% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCeEEEEEECCCC-hhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc
Q 027904 117 GSLVVVDFYRTSC-GSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI 161 (217)
Q Consensus 117 ~k~vlV~F~a~wC-~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~ 161 (217)
|++++|.|.=+.| ..|-.+...+.++.+.+.....++.++.|-+.
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 8999999999999 67887777777777766543446777777663
No 246
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.22 E-value=13 Score=33.86 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.+.++.- .++|-+.++.+-|..|..+...++++++.-+ ++.+...+. +. ...|++
T Consensus 7 ~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----ki~~~~~~~----~~----------~~~p~~ 65 (515)
T TIGR03140 7 LAQLKSYLASL---ENPVTLVLSAGSHEKSKELLELLDEIASLSD----KISLTQNTA----DT----------LRKPSF 65 (515)
T ss_pred HHHHHHHHHhc---CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC----CeEEEEecC----Cc----------CCCCeE
Confidence 46677777653 4555555555579999999999999888543 476644333 21 346999
Q ss_pred EEEECCE
Q 027904 183 HFYKNGA 189 (217)
Q Consensus 183 ~~~k~G~ 189 (217)
.++++|+
T Consensus 66 ~~~~~~~ 72 (515)
T TIGR03140 66 TILRDGA 72 (515)
T ss_pred EEecCCc
Confidence 9987775
No 247
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.21 E-value=14 Score=33.77 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
.+++.+.++.- .++|-+.++.+-|..|..+...++++++.-+ ++.+...+. + ...|++
T Consensus 7 ~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~----~i~~~~~~~----~-----------~~~p~~ 64 (517)
T PRK15317 7 KTQLKQYLELL---ERPIELVASLDDSEKSAELKELLEEIASLSD----KITVEEDSL----D-----------VRKPSF 64 (517)
T ss_pred HHHHHHHHHhC---CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC----ceEEEEccC----C-----------CCCCEE
Confidence 46677777653 5566666666689999999999999988643 366643222 1 347999
Q ss_pred EEEECCEE
Q 027904 183 HFYKNGAL 190 (217)
Q Consensus 183 ~~~k~G~~ 190 (217)
.+.++|+.
T Consensus 65 ~~~~~~~~ 72 (517)
T PRK15317 65 SITRPGED 72 (517)
T ss_pred EEEcCCcc
Confidence 99877643
No 248
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=85.09 E-value=3.8 Score=33.88 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=25.4
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCC
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGD 148 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~ 148 (217)
+||+.+++..+.||+.|....=.+-....++..
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 499999999999999998776445554455654
No 249
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=12 Score=28.76 Aligned_cols=93 Identities=23% Similarity=0.336 Sum_probs=57.2
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----Cc---chhHHHH-HHcCCC----------
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EY---DEQSEVA-ERLKIK---------- 177 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d----~~---~~~~~l~-~~~~I~---------- 177 (217)
.++.++|.=.|+-|+.--+ ...|+.|.++|.+. ++.++..-|.. +- ++-..+| ..|||+
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~Vn 100 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVN 100 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeec
Confidence 4888888889999987764 34677778887764 45555554421 00 1112222 233331
Q ss_pred -------------CCc-------------EEEEEECCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 178 -------------TVP-------------LFHFYKNGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 178 -------------~~P-------------t~~~~k~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
..| -|++=++|+++.|+ ....++++...|++.+.
T Consensus 101 G~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 101 GKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 111 12222699999999 45788999999988764
No 250
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=84.89 E-value=2.7 Score=25.92 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
.|+.++|+.|.+..-.+....- .+.+..++..+ ....++.+...-..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i-------~~~~~~~~~~~--~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL-------PYELVPVDLGE--GEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEeCCCC--CCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 5778999999988766665522 24555555421 11114566667788997653 46554
No 251
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=84.87 E-value=8.5 Score=30.83 Aligned_cols=57 Identities=26% Similarity=0.353 Sum_probs=37.0
Q ss_pred CCeEEEEEECCCCh-hhHHhHHHHHHHHHHhC-CCCCCE--EEEEEEccCCcchhHHHHHHcCC
Q 027904 117 GSLVVVDFYRTSCG-SCKYIEQGFSKLCKGSG-DQEAPV--IFLKHNVIDEYDEQSEVAERLKI 176 (217)
Q Consensus 117 ~k~vlV~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~v--~~~~Vd~~d~~~~~~~l~~~~~I 176 (217)
+++++|+|.=+.|+ .|-.+...+..+.+++. ....++ .++.||- +.|. +++.++|..
T Consensus 67 Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP--erDt-p~~lk~Y~~ 127 (207)
T COG1999 67 GKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP--ERDT-PEVLKKYAE 127 (207)
T ss_pred CCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC--CCCC-HHHHHHHhc
Confidence 89999999988884 68888888888777766 333344 4555553 2222 455555544
No 252
>PRK09301 circadian clock protein KaiB; Provisional
Probab=84.78 E-value=4.1 Score=28.95 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=57.2
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEe-C
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAF-P 195 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~-~ 195 (217)
+..++=.|.|..-+..+.....+.++.+.+-.. .+.+--||+ .+++++++.++|-++||++=.- -.++.++ |
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g--~y~LeVIDv----~~qPelAE~~~IvATPTLIK~~-P~P~rriiG 77 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKG--VYALKVIDV----LKNPQLAEEDKILATPTLAKIL-PPPVRKIIG 77 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEc----ccCHhHHhHCCeEEecHHhhcC-CCCcceeec
Confidence 456666677888888888888888887765431 477777899 8999999999999999966433 2344444 3
Q ss_pred C-CCHHHHHH
Q 027904 196 T-RDKERIDA 204 (217)
Q Consensus 196 g-~~~~~l~~ 204 (217)
. .+.+.+..
T Consensus 78 Dlsd~~kVL~ 87 (103)
T PRK09301 78 DLSDREKVLI 87 (103)
T ss_pred ccccHHHHHH
Confidence 3 34444443
No 253
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=83.93 E-value=4.9 Score=27.66 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=51.0
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEe
Q 027904 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~ 194 (217)
..++=.|.|..-+.++.....+.++.+.+-.. .+.+--||+ .+++++++.++|-++||++=..- .++.++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g--~y~LeVIDv----~~qP~lAE~~~IvATPtLIK~~P-~P~rri 72 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG--VYALKVIDV----LKNPQLAEEDKILATPTLSKILP-PPVRKI 72 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC--ceEEEEEEc----ccCHhHHhHCCEEEecHHhhcCC-CCccee
Confidence 34555666778888888888888887765431 477777899 89999999999999999664332 334444
No 254
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.18 E-value=1.2 Score=33.08 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.7
Q ss_pred EEEEECCCChhhHHhHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSK 141 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~ 141 (217)
+..|+.++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346788999999998866665
No 255
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=81.98 E-value=11 Score=24.45 Aligned_cols=62 Identities=8% Similarity=-0.062 Sum_probs=37.5
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
..|+.+.|+.|++..-.+.+..- .+.+..+|........+++.+--.-..+|++. .+|..+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl-------~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l~ 63 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL-------RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNIIC 63 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC-------CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEEE
Confidence 35778889999877644444322 35666666532212334566666667899985 5776554
No 256
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.80 E-value=4.5 Score=31.60 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=28.2
Q ss_pred chhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027904 165 DEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i 206 (217)
..+...+.+.||.++||+++ +|+.+ ..|..+.+.|.+.|
T Consensus 162 ~~~~~~a~~~gv~G~Pt~vv--~g~~~-~~G~~~~~~~~~~i 200 (201)
T cd03024 162 RADEARARQLGISGVPFFVF--NGKYA-VSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHHCCCCcCCEEEE--CCeEe-ecCCCCHHHHHHHh
Confidence 44556788999999999887 65432 23667888887765
No 257
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.23 E-value=7 Score=29.35 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=50.0
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC--cEEEEEECCEEEEEeC
Q 027904 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV--PLFHFYKNGALVEAFP 195 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~--Pt~~~~k~G~~v~~~~ 195 (217)
..-++.|+.|.|+=|......++. . ++.+-.+.. ++...+.++++|..= -.--..-+|..++ |
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~----Gf~Vk~~~~----~d~~alK~~~gIp~e~~SCHT~VI~Gy~vE--G 89 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----N----GFEVKVVET----DDFLALKRRLGIPYEMQSCHTAVINGYYVE--G 89 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----C----CcEEEEeec----CcHHHHHHhcCCChhhccccEEEEcCEEEe--c
Confidence 456777999999999987766652 1 356666666 667788888988421 1111234666554 3
Q ss_pred CCCHHHHHHHHHHh
Q 027904 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 g~~~~~l~~~i~~~ 209 (217)
....+.|..++++-
T Consensus 90 HVPa~aI~~ll~~~ 103 (149)
T COG3019 90 HVPAEAIARLLAEK 103 (149)
T ss_pred cCCHHHHHHHHhCC
Confidence 46777888777653
No 258
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=77.96 E-value=12 Score=23.63 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=35.5
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEE
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVE 192 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~ 192 (217)
.|+.++|+.|+...-.+....- .+....+|.........++.+......+|++.. +|..+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~ 63 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI-------PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLA 63 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC-------CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEE
Confidence 4778999999987665555422 245555554211122344555555668999863 565543
No 259
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=5.4 Score=31.77 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCCcEEEEEECCEEEEEeCC---CCHHHHHHHHHHhc
Q 027904 168 SEVAERLKIKTVPLFHFYKNGALVEAFPT---RDKERIDAAILKYT 210 (217)
Q Consensus 168 ~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g---~~~~~l~~~i~~~~ 210 (217)
..+++++++.++||+++-+||+.----.| .+++.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 56889999999999999999976554433 56788888887765
No 260
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=76.50 E-value=3.3 Score=27.87 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCcEEEEEE-CCEEEEEe--CCCCHHHHHHHHHHhc
Q 027904 178 TVPLFHFYK-NGALVEAF--PTRDKERIDAAILKYT 210 (217)
Q Consensus 178 ~~Pt~~~~k-~G~~v~~~--~g~~~~~l~~~i~~~~ 210 (217)
.-|++++++ +|+.+.++ .+.+.++|.++|.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 469999997 89988887 7899999999998753
No 261
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.60 E-value=13 Score=26.26 Aligned_cols=76 Identities=24% Similarity=0.254 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEE---CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC-CCC
Q 027904 103 DAEFFKILEKSKETGSLVVVDFY---RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK-IKT 178 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~---a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~-I~~ 178 (217)
.+.+++.++. ++.++..=. .|-|+........+..... +.|..||+ -.++++.+.+. ...
T Consensus 5 ~~~I~~~i~~----n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~--------v~~~~vnV----L~d~eiR~~lk~~s~ 68 (105)
T COG0278 5 LDRIQKQIKE----NPVVLFMKGTPEFPQCGFSAQAVQILSACGV--------VDFAYVDV----LQDPEIRQGLKEYSN 68 (105)
T ss_pred HHHHHHHhhc----CceEEEecCCCCCCCCCccHHHHHHHHHcCC--------cceeEEee----ccCHHHHhccHhhcC
Confidence 3445555554 443333222 5678877776655554321 56778888 55566655442 345
Q ss_pred CcEE-EEEECCEEEEEe
Q 027904 179 VPLF-HFYKNGALVEAF 194 (217)
Q Consensus 179 ~Pt~-~~~k~G~~v~~~ 194 (217)
+||| .+|-+|+.++..
T Consensus 69 WPT~PQLyi~GEfvGG~ 85 (105)
T COG0278 69 WPTFPQLYVNGEFVGGC 85 (105)
T ss_pred CCCCceeeECCEEeccH
Confidence 7776 466799888653
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=72.26 E-value=8.3 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=24.3
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHH
Q 027904 166 EQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAI 206 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i 206 (217)
.+...+.++||.++||+++ +|+.+ .|....+.|...|
T Consensus 155 ~~~~~a~~~gi~gvPtfvv--~g~~~--~G~~~l~~~~~~l 191 (192)
T cd03022 155 ANTEEAIARGVFGVPTFVV--DGEMF--WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHcCCCcCCeEEE--CCeee--cccccHHHHHHHh
Confidence 3456678899999999987 77633 2444555555443
No 263
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=69.08 E-value=1.6 Score=29.72 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=42.1
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEE
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFH 183 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~ 183 (217)
|-+..-+....+...+..+.+.+.+ ..+.+--||+ .+++++++.++|-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv----~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDV----LEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEET----TTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEc----ccCHhHHhHCCeeecceEe
Confidence 3445555667777788888886433 2688888999 8999999999999999975
No 264
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=68.25 E-value=15 Score=24.83 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=35.4
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
+..|+.+.|++|+...-.+....- .+.+..+|.. ....++.+......+|.+.. .+|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl-------~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~-~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI-------PHEVININLK---DKPDWFLEKNPQGKVPALEI-DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------CCeEEEeCCC---CCcHHHHhhCCCCCcCEEEE-CCCCEE
Confidence 344678889999987655554322 3555556651 12234555556678999863 335544
No 265
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.58 E-value=44 Score=24.09 Aligned_cols=101 Identities=12% Similarity=0.122 Sum_probs=70.2
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH----HcCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE----RLKIK 177 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~----~~~I~ 177 (217)
+.+++-+.-... -+...++-|--+--+.-..+.+.+.++++.+.. .+++.|+-||- +..+-+.. -|+|.
T Consensus 7 ~~~~m~e~wedd--~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDP----D~FPllv~yWektF~ID 79 (120)
T cd03074 7 KPENMFETWEDD--LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDP----DDFPLLVPYWEKTFGID 79 (120)
T ss_pred cHHHHHHhhhcc--cCCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECC----ccCchhhHHHHhhcCcc
Confidence 444444444432 257788889999999999999999999999875 67899999998 77666543 44543
Q ss_pred -CCcEEEEEE--CCEEE--EEe---CCCCHHHHHHHHHHh
Q 027904 178 -TVPLFHFYK--NGALV--EAF---PTRDKERIDAAILKY 209 (217)
Q Consensus 178 -~~Pt~~~~k--~G~~v--~~~---~g~~~~~l~~~i~~~ 209 (217)
.-|.+=++. +..-+ ..- ...+.++|..||+..
T Consensus 80 l~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 80 LFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cCCCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 238877763 33222 222 236789999999865
No 266
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=67.43 E-value=13 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCC-CCCEEEEEEEcc
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQ-EAPVIFLKHNVI 161 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~v~~~~Vd~~ 161 (217)
|..++|-+-..+|..|..-...|+.|..++... ..+|.|+.||--
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 788999999999999998888888887666532 347999999863
No 267
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=66.27 E-value=53 Score=26.26 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=50.6
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEE--EEEccCC------------cchhHHHHHHcCCCCCcEEEEEECC
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFL--KHNVIDE------------YDEQSEVAERLKIKTVPLFHFYKNG 188 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~--~Vd~~d~------------~~~~~~l~~~~~I~~~Pt~~~~k~G 188 (217)
.|.+..|..|=.....|.+++.+- + +..+ +||..|. .+.....+++++..++=|=.++-||
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~~-~----Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG 78 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAARP-D----VIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNG 78 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHHT-S----SEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETT
T ss_pred EecCCCCCCCcHHHHHHHHhhcCC-C----EEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECC
Confidence 588899999999999999999983 3 4443 5665443 1233456677777665444455677
Q ss_pred EEEEEeCCCCHHHHHHHHHHhccC
Q 027904 189 ALVEAFPTRDKERIDAAILKYTST 212 (217)
Q Consensus 189 ~~v~~~~g~~~~~l~~~i~~~~~~ 212 (217)
+.- ..|.+...+...|.+....
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHHHT
T ss_pred eee--eeccCHHHHHHHHHHhhcc
Confidence 643 3678889999999887654
No 268
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=64.94 E-value=3.4 Score=37.87 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH-HHH--HHHHhCCCCCCEEEEEEEccCCcchhHHH--------
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG-FSK--LCKGSGDQEAPVIFLKHNVIDEYDEQSEV-------- 170 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~-l~~--l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l-------- 170 (217)
..+.|+++-.+ ++++++-..=+-|..|..|..+ |+. .++.+.+ +++-++||- ++-+++
T Consensus 101 gqeaf~kar~e----nkpifLsvgystchwchvmekesfeneet~~ilne---nfv~ikVDR----EERPDVDK~YM~Fv 169 (786)
T KOG2244|consen 101 GQEAFNKARAE----NKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE---NFVKIKVDR----EERPDVDKLYMAFV 169 (786)
T ss_pred hHHHHHHHHhc----CCCEEEEcccccchheeeeecccccCHHHHHHHhh---hhhhhccCh----hhcCchHHHHHHHH
Confidence 45666666555 9999999999999999988765 443 5555544 455566665 444433
Q ss_pred HHHcCCCCCcEEEEEE
Q 027904 171 AERLKIKTVPLFHFYK 186 (217)
Q Consensus 171 ~~~~~I~~~Pt~~~~k 186 (217)
....|--++|.-+|+.
T Consensus 170 ~assg~GGWPmsV~LT 185 (786)
T KOG2244|consen 170 VASSGGGGWPMSVFLT 185 (786)
T ss_pred HhccCCCCCceeEEeC
Confidence 2345778899988873
No 269
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=64.11 E-value=20 Score=30.73 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=62.9
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
+.|.+| |-++.+++.++ |.|.+|.|+.+-.....+.. -..+++++.+....+.++..|+ .....-..-+
T Consensus 210 pLVREi-TFeN~EELtEE----GlPflILf~~kdD~~s~k~F--~~aI~ReL~~e~~~in~l~ADG----~~f~hpL~Hl 278 (375)
T KOG0912|consen 210 PLVREI-TFENAEELTEE----GLPFLILFRKKDDKESEKIF--KNAIARELDDETLAINFLTADG----KVFKHPLRHL 278 (375)
T ss_pred hhhhhh-hhccHHHHhhc----CCceEEEEecCCcccHHHHH--HHHHHHHhhhhhhccceeecCc----ceecchHHHh
Confidence 467777 88888888887 99999999988775554332 2345555555444588998888 5444444444
Q ss_pred CC--CCCcEEEE--------EECCEEEEEeCCCCHHHHHHHHHHhc
Q 027904 175 KI--KTVPLFHF--------YKNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 175 ~I--~~~Pt~~~--------~k~G~~v~~~~g~~~~~l~~~i~~~~ 210 (217)
|- .-.|.+.+ |.+++.+ ..+..|.+|+..+-
T Consensus 279 gKs~~DLPviaIDsF~Hmylfp~f~di-----~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 279 GKSPDDLPVIAIDSFRHMYLFPDFNDI-----NIPGKLKQFVADLH 319 (375)
T ss_pred CCCcccCcEEEeeccceeeecCchhhh-----cCccHHHHHHHHHh
Confidence 32 23555443 3333322 34557888887654
No 270
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=63.97 E-value=27 Score=24.94 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----CcchhHHHHHHcCCCCCcEEEEE
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----EYDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d----~~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
.|+.++|.=.|+-|+.-. -...|++|.+++... ++.++..=|.+ +...+.++..-..-..-+++-+|
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf 90 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVF 90 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEB
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccce
Confidence 489999988999999998 667899999999743 68888877643 12334444443333333455555
No 271
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=60.51 E-value=18 Score=27.72 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=31.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
|.+|+..-||+|-...+.+.++.+.+.+. .+.+.-+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccc
Confidence 67899999999999999999999998432 566666654
No 272
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=60.16 E-value=42 Score=21.36 Aligned_cols=73 Identities=5% Similarity=0.019 Sum_probs=41.0
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKE 200 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~ 200 (217)
+..|+.+.|+.|++..-.+....- .+.+..++..........+.+......+|.+. .+|..+. ...
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-------~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l~-----es~ 67 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-------DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKLF-----ESR 67 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-------CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEEE-----cHH
Confidence 334556779999887765555322 24555555421112234566666677899874 4665443 444
Q ss_pred HHHHHHH
Q 027904 201 RIDAAIL 207 (217)
Q Consensus 201 ~l~~~i~ 207 (217)
.|.++|.
T Consensus 68 aI~~yL~ 74 (76)
T cd03053 68 AITRYLA 74 (76)
T ss_pred HHHHHHh
Confidence 5666554
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.03 E-value=15 Score=28.39 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.2
Q ss_pred EEEEECCCChhhHHhHHHHHHHHHHhC
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLCKGSG 147 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~~~~~ 147 (217)
|.+|+-+.|++|-...+.+.++.+.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999883
No 274
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=57.76 E-value=8.8 Score=27.44 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=16.8
Q ss_pred EEEECCCChhhHHhHHHHHHH
Q 027904 122 VDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l 142 (217)
..|+.+.|..|++....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 468899999999987666654
No 275
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.68 E-value=13 Score=28.73 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=19.6
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCE
Q 027904 166 EQSEVAERLKIKTVPLFHFYKNGA 189 (217)
Q Consensus 166 ~~~~l~~~~~I~~~Pt~~~~k~G~ 189 (217)
.+...+.++||.++||+++..++.
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCe
Confidence 345667889999999999998765
No 276
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=57.41 E-value=1.1e+02 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=35.3
Q ss_pred CCeEEEEEECCCChh--hHHhHHHHHHHHHHhCCCCC-CEEEEEEEccCCcchhHHHHHHcCCCCC
Q 027904 117 GSLVVVDFYRTSCGS--CKYIEQGFSKLCKGSGDQEA-PVIFLKHNVIDEYDEQSEVAERLKIKTV 179 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~--C~~~~p~l~~l~~~~~~~~~-~v~~~~Vd~~d~~~~~~~l~~~~~I~~~ 179 (217)
+++|-|.+|.+---+ =....+.+.++.++|....+ ++.+-.+|...+.+...+.+.++||...
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~ 89 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPV 89 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCcc
Confidence 567777777654211 23444445555555544444 6888888872222333445556888773
No 277
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=57.32 E-value=40 Score=29.19 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred CeEEEEEECCCChhhHHhH----HHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEEEEEECCEEE
Q 027904 118 SLVVVDFYRTSCGSCKYIE----QGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLFHFYKNGALV 191 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~----p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~--~Pt~~~~k~G~~v 191 (217)
+..-+.|-| ||.|-+.. ..+.++.+.+......+.+.-+-|.-|... ...-..+||.+ -|...+|++|+.+
T Consensus 255 R~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPG-Eak~AdiGia~~~~~~~~~f~~g~~~ 331 (361)
T COG0821 255 RSRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPG-EAKHADIGIAGGGKGSGPVFVKGEII 331 (361)
T ss_pred cccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCc-chhccceeeecCCCCeeEEEECCeEE
Confidence 344455555 88885433 334444444444333455555554222111 11222456543 6899999999999
Q ss_pred EEeC-CCCHHHHHHHHHHhc
Q 027904 192 EAFP-TRDKERIDAAILKYT 210 (217)
Q Consensus 192 ~~~~-g~~~~~l~~~i~~~~ 210 (217)
.++. ..-.++|+..++++.
T Consensus 332 ~~~~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 332 KKLPEEDIVEELEALIEAYA 351 (361)
T ss_pred EecChhhHHHHHHHHHHHHH
Confidence 9984 455677887777765
No 278
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=56.80 E-value=11 Score=27.05 Aligned_cols=45 Identities=7% Similarity=0.030 Sum_probs=28.2
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCc---chhHHHHHHcC
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEY---DEQSEVAERLK 175 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~---~~~~~l~~~~~ 175 (217)
..|+.+.|..|++....+++. ++.+..+|+..+. ++-..+.+..|
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~---------~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK---------GIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC---------CCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 468899999999988777763 2444456653322 33344555555
No 279
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=53.95 E-value=46 Score=27.40 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=61.1
Q ss_pred CeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC------------cchhHHHHHHcCCCCCcEEEEE
Q 027904 118 SLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------------YDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 118 k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------------~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
.-|+=.|.+..|..|=.....|.+++.+=.- -..-++||..|. .+......+.++-.+++|=..+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~v---lALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPGV---LALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCCE---EEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 3455567788999999999888888765221 122345665442 2345567888999999998888
Q ss_pred ECCEEEEEeCCCCHHHHHHHHHHhc
Q 027904 186 KNGALVEAFPTRDKERIDAAILKYT 210 (217)
Q Consensus 186 k~G~~v~~~~g~~~~~l~~~i~~~~ 210 (217)
-||+... .|.+..+|...|....
T Consensus 119 vnGr~~~--~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 119 VNGRVHA--NGADPGAIEDAIAAMA 141 (261)
T ss_pred eechhhh--cCCCHHHHHHHHHHhh
Confidence 8886433 5788888888887654
No 280
>PRK10026 arsenate reductase; Provisional
Probab=53.58 E-value=16 Score=27.43 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=17.8
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+-+.|..|+.....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4567899999999998777664
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.04 E-value=19 Score=25.88 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=17.3
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+.|.|..|+.....|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999988766654
No 282
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=52.34 E-value=38 Score=23.77 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=36.9
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC--CCcEEEE-EECCE
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK--TVPLFHF-YKNGA 189 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~--~~Pt~~~-~k~G~ 189 (217)
||-.+|+-|......+.+... ...+.|+.+.- +...++...++++ ..-+.++ .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-----~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-----GGRLRFVDIQS----EPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-----CCCEEEEECCC----hhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 788999999999888777622 12477766532 3444556667764 3444455 46776
No 283
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.06 E-value=1.1e+02 Score=27.04 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEE
Q 027904 103 DAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLF 182 (217)
Q Consensus 103 ~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~ 182 (217)
++++-+.++.. .+..-+=-|++-.|..|-..-..+.-++--. +++.-..+|. ...++-.+.-+|-++||+
T Consensus 104 ~q~vieqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvlN----p~I~H~~IdG----a~Fq~Evear~IMaVPtv 173 (520)
T COG3634 104 DQDVIEQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVLN----PRIKHTAIDG----ALFQDEVEARNIMAVPTV 173 (520)
T ss_pred hHHHHHHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhcC----CCceeEEecc----hhhHhHHHhccceecceE
Confidence 34444444443 3667777778888999987776666665543 3588888888 666666777899999995
Q ss_pred EEEECCEEEEEeCCCCHHHHHHHHH
Q 027904 183 HFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 183 ~~~k~G~~v~~~~g~~~~~l~~~i~ 207 (217)
+ -||+.... |-+..++|...|.
T Consensus 174 f--lnGe~fg~-GRmtleeilaki~ 195 (520)
T COG3634 174 F--LNGEEFGQ-GRMTLEEILAKID 195 (520)
T ss_pred E--Ecchhhcc-cceeHHHHHHHhc
Confidence 4 56754432 2345555555544
No 284
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=51.15 E-value=79 Score=21.77 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHH
Q 027904 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAA 205 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~ 205 (217)
..+|+.|++..=.+... + -.+.+..||.. .....+.+..-...+|++. .+|..+ .+...|.++
T Consensus 19 ~g~cpf~~rvrl~L~eK-----g--i~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eY 81 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----G--VVFNVTTVDMK---RKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEF 81 (91)
T ss_pred CCCChhHHHHHHHHHHC-----C--CceEEEEeCCC---CCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHH
Confidence 46799998876444432 2 13555666651 2234455555567899654 566655 367788888
Q ss_pred HHHhccC
Q 027904 206 ILKYTST 212 (217)
Q Consensus 206 i~~~~~~ 212 (217)
|++...+
T Consensus 82 Lde~~~~ 88 (91)
T cd03061 82 LEETLCP 88 (91)
T ss_pred HHHHccC
Confidence 8887543
No 285
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=50.34 E-value=41 Score=23.67 Aligned_cols=70 Identities=10% Similarity=0.166 Sum_probs=34.9
Q ss_pred EEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC-------CCCcEE-EEEECCEEEEE
Q 027904 122 VDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI-------KTVPLF-HFYKNGALVEA 193 (217)
Q Consensus 122 V~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I-------~~~Pt~-~~~k~G~~v~~ 193 (217)
|.+|-+.+.-...++..=+++..-+... +|.|-.||+..+ ++.....++... .+.|.. .+|.+++.++-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~~-e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAMD-EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcCC-HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 3444455555666666655555544332 699999999553 333444433221 233332 46788887775
Q ss_pred e
Q 027904 194 F 194 (217)
Q Consensus 194 ~ 194 (217)
+
T Consensus 80 y 80 (99)
T PF04908_consen 80 Y 80 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 286
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=50.05 E-value=57 Score=28.48 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCChhhH-HhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC-CcEEEEEECCEEEEEeCC-CCHHHHH
Q 027904 127 TSCGSCK-YIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT-VPLFHFYKNGALVEAFPT-RDKERID 203 (217)
Q Consensus 127 ~wC~~C~-~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~-~Pt~~~~k~G~~v~~~~g-~~~~~l~ 203 (217)
|.|+.|. .......++.+.+.+....+.+.-.-|.-+ .-...-...+||.+ -+..++|++|+.+.++.. .-.+.|.
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VN-gpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVN-GPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCC-CCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 3355443 333445556666665544577777666211 11112234566654 456888899999998843 3445555
Q ss_pred HHHHHh
Q 027904 204 AAILKY 209 (217)
Q Consensus 204 ~~i~~~ 209 (217)
+.|+++
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555554
No 287
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=47.36 E-value=1.5e+02 Score=23.89 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=23.6
Q ss_pred hHHHHHHcCCCCCcEEEEEECCEEEEEe-CCCCHHH
Q 027904 167 QSEVAERLKIKTVPLFHFYKNGALVEAF-PTRDKER 201 (217)
Q Consensus 167 ~~~l~~~~~I~~~Pt~~~~k~G~~v~~~-~g~~~~~ 201 (217)
++.+.++|+|+.+|+|++... ...+.+ |..+...
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ 185 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQ 185 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHH
Confidence 588999999999999999743 233343 4444443
No 288
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=1.4e+02 Score=23.29 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
.|+.++|.=-|+.|+.-..-...|..|.++|.+. ++.++..=|
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPC 75 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPC 75 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEecc
Confidence 4777877777888888876666788887777643 455555544
No 289
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=46.75 E-value=1.4e+02 Score=23.49 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccC----------------------CcchhHHHHH
Q 027904 116 TGSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVID----------------------EYDEQSEVAE 172 (217)
Q Consensus 116 ~~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d----------------------~~~~~~~l~~ 172 (217)
.++.|++.|| .++---|=...-.|...+.++...+-.+..+.+|-.- -.|.+.++++
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 3789999898 4444444333333444455554443356666666210 0366789999
Q ss_pred HcCC----CCCcE--EEEE-ECCEEEEE----e-CCCCHHHHHHHHHHh
Q 027904 173 RLKI----KTVPL--FHFY-KNGALVEA----F-PTRDKERIDAAILKY 209 (217)
Q Consensus 173 ~~~I----~~~Pt--~~~~-k~G~~v~~----~-~g~~~~~l~~~i~~~ 209 (217)
.||| .+++. ++++ .+|..... + .|++.++....++..
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 9998 44443 3333 45644331 2 588888887777643
No 290
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.50 E-value=78 Score=25.80 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=42.5
Q ss_pred HHHHHHhhhcCCCeEEEEEE-----CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC-CCCC
Q 027904 106 FFKILEKSKETGSLVVVDFY-----RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK-IKTV 179 (217)
Q Consensus 106 f~~~l~~a~~~~k~vlV~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~-I~~~ 179 (217)
++..+...-+ .++|++ |. .|-||..+++...+... ++.|...|+ -.+.++.+-.. ...+
T Consensus 128 ~~~~l~~lv~-a~~v~l-FmKG~p~~P~CGFS~~~v~iL~~~---------nV~~~~fdI----L~DeelRqglK~fSdW 192 (227)
T KOG0911|consen 128 LDNRLEKLVK-AKPVML-FMKGTPEEPKCGFSRQLVGILQSH---------NVNYTIFDV----LTDEELRQGLKEFSDW 192 (227)
T ss_pred HHHHHHHhcc-cCeEEE-EecCCCCcccccccHHHHHHHHHc---------CCCeeEEec----cCCHHHHHHhhhhcCC
Confidence 4444444321 345554 44 67888888887766654 355777787 44444443332 2457
Q ss_pred cEE-EEEECCEEEEE
Q 027904 180 PLF-HFYKNGALVEA 193 (217)
Q Consensus 180 Pt~-~~~k~G~~v~~ 193 (217)
||| .+|-+|+.++.
T Consensus 193 PTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 193 PTFPQLYVKGEFIGG 207 (227)
T ss_pred CCccceeECCEeccC
Confidence 776 46779987763
No 291
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=44.51 E-value=43 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 139 FSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 139 l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
+.++.+.+.. .+.| +....|.++|+|+.+|+++. .+|+.+
T Consensus 158 ~~~l~~~l~~---~vYf---------dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDS---RIYF---------DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCC---ceEE---------cCCchHhhccCceeeceEEE-ecCCEE
Confidence 5566666654 4555 66778999999999999875 566543
No 292
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=44.45 E-value=1.5e+02 Score=23.19 Aligned_cols=77 Identities=8% Similarity=-0.050 Sum_probs=44.9
Q ss_pred CCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCC
Q 027904 117 GSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPT 196 (217)
Q Consensus 117 ~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g 196 (217)
+...+-.|+.++|+.|....=.++...- .+.+..||.. ...+++.+..--..+|+++ .+|..+.
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl-------~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~--~~g~~l~---- 70 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV-------SVEIEQVEKD---NLPQDLIDLNPYQSVPTLV--DRELTLY---- 70 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC-------CCEEEeCCcc---cCCHHHHHhCCCCCCCEEE--ECCEEee----
Confidence 3444555667889999987755554321 3556666651 2234555555556799986 5676553
Q ss_pred CCHHHHHHHHHHhc
Q 027904 197 RDKERIDAAILKYT 210 (217)
Q Consensus 197 ~~~~~l~~~i~~~~ 210 (217)
....|..+|.+..
T Consensus 71 -ES~AIl~YL~~~~ 83 (211)
T PRK09481 71 -ESRIIMEYLDERF 83 (211)
T ss_pred -CHHHHHHHHHHhC
Confidence 3335555555443
No 293
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=41.39 E-value=35 Score=24.74 Aligned_cols=23 Identities=9% Similarity=0.275 Sum_probs=18.7
Q ss_pred EEEEECCCChhhHHhHHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKLC 143 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l~ 143 (217)
+..|+.|.|..|+.....|++-.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 45688999999999988777653
No 294
>PRK10387 glutaredoxin 2; Provisional
Probab=40.57 E-value=1.7e+02 Score=22.62 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=37.5
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~ 203 (217)
++.+.|++|.+..=.+....- .+....++. .......+......+|+++. .+|..+. +...|.
T Consensus 4 y~~~~sp~~~kv~~~L~~~gi-------~y~~~~~~~----~~~~~~~~~~p~~~VPvL~~-~~g~~l~-----eS~aI~ 66 (210)
T PRK10387 4 YIYDHCPFCVKARMIFGLKNI-------PVELIVLAN----DDEATPIRMIGQKQVPILQK-DDGSYMP-----ESLDIV 66 (210)
T ss_pred EeCCCCchHHHHHHHHHHcCC-------CeEEEEcCC----CchhhHHHhcCCcccceEEe-cCCeEec-----CHHHHH
Confidence 457789999987655444322 244444443 22221122333457898753 4665543 455566
Q ss_pred HHHHHhc
Q 027904 204 AAILKYT 210 (217)
Q Consensus 204 ~~i~~~~ 210 (217)
.+|++..
T Consensus 67 ~yL~~~~ 73 (210)
T PRK10387 67 HYIDELD 73 (210)
T ss_pred HHHHHhC
Confidence 6665543
No 295
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=40.26 E-value=2.4e+02 Score=24.29 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHH-HcCCCCCcEEEEEECCEEEEEe
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAE-RLKIKTVPLFHFYKNGALVEAF 194 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~-~~~I~~~Pt~~~~k~G~~v~~~ 194 (217)
.+++.+|+|.+.-- |.+++....-.. .+.+...-- ...+++. .-..+..|.+.+|++...--+.
T Consensus 152 Rhq~ffVf~Gtge~-------PL~d~fidAASe---~~~~a~FfS-----aseeVaPe~~~~kempaV~VFKDetf~i~d 216 (468)
T KOG4277|consen 152 RHQPFFVFFGTGEG-------PLFDAFIDAASE---KFSVARFFS-----ASEEVAPEENDAKEMPAVAVFKDETFEIED 216 (468)
T ss_pred ccCceEEEEeCCCC-------cHHHHHHHHhhh---heeeeeeec-----cccccCCcccchhhccceEEEccceeEEEe
Confidence 37899999886543 333333222211 233333221 1122222 2345678999999987543333
Q ss_pred CCCCHHHHHHHHHHh
Q 027904 195 PTRDKERIDAAILKY 209 (217)
Q Consensus 195 ~g~~~~~l~~~i~~~ 209 (217)
..+.++|-+||.+-
T Consensus 217 -e~dd~dLseWinRE 230 (468)
T KOG4277|consen 217 -EGDDEDLSEWINRE 230 (468)
T ss_pred -cCchhHHHHHHhHh
Confidence 34667888888753
No 296
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=39.84 E-value=97 Score=19.56 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=38.3
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCC-CCCcEEEEEECCEEEEEeCCCCHHH
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKI-KTVPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I-~~~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
.++.+.|+.|++..=.+....- .+....+|.. ....++.+..-. ..+|++. .+|..+. +...
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl-------~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~--~~~~~l~-----eS~a 65 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV-------PYEYVEEDLG---NKSELLLASNPVHKKIPVLL--HNGKPIC-----ESLI 65 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC-------CCEEEEeCcc---cCCHHHHHhCCCCCCCCEEE--ECCEEee-----hHHH
Confidence 4567789999987765555422 2444445541 222333333332 5899885 3565442 4556
Q ss_pred HHHHHHH
Q 027904 202 IDAAILK 208 (217)
Q Consensus 202 l~~~i~~ 208 (217)
|.++|++
T Consensus 66 I~~yL~~ 72 (74)
T cd03058 66 IVEYIDE 72 (74)
T ss_pred HHHHHHh
Confidence 6666664
No 297
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=39.17 E-value=1.2e+02 Score=26.45 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=42.2
Q ss_pred ECCCChhhH-HhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCC--CcEEEEEECCEEEEEeCCCCHHH
Q 027904 125 YRTSCGSCK-YIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKT--VPLFHFYKNGALVEAFPTRDKER 201 (217)
Q Consensus 125 ~a~wC~~C~-~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~--~Pt~~~~k~G~~v~~~~g~~~~~ 201 (217)
.-|.|+-|. .+.....++.+.+......+.++-+-|.-|.... .--..+||.+ .-..++|++|+.+.++ ..++
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGE-ak~ADiGIaggg~g~~~lF~~G~~~~kv---~~~~ 336 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGE-AKHADIGISGGGTGSAILFKRGKPKAKQ---PETD 336 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCch-hhccCeeeecCCCCceEEEECCEEeEec---CHHH
Confidence 345555553 3444555555555554446777766653221111 1122456653 3457889999998876 3344
Q ss_pred HHHHHH
Q 027904 202 IDAAIL 207 (217)
Q Consensus 202 l~~~i~ 207 (217)
+.+.+.
T Consensus 337 ~~~~l~ 342 (346)
T TIGR00612 337 MADELI 342 (346)
T ss_pred HHHHHH
Confidence 444443
No 298
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=35.38 E-value=1.7e+02 Score=21.02 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=50.9
Q ss_pred CCeEEEEEE-CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---------cchhHHHHHHcCCCCCcE-EEEE
Q 027904 117 GSLVVVDFY-RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---------YDEQSEVAERLKIKTVPL-FHFY 185 (217)
Q Consensus 117 ~k~vlV~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---------~~~~~~l~~~~~I~~~Pt-~~~~ 185 (217)
++++| .|. ..--+.=+.....+.+....+..+ ++.++.+-- +. ......+.++|++..-.. ++++
T Consensus 10 ~R~lv-v~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~-~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLi 85 (118)
T PF13778_consen 10 NRLLV-VFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITG-DGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLI 85 (118)
T ss_pred CceEE-EECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeC-CccccccCcCCHHHHHHHHHHhCCCCCceEEEEE
Confidence 34444 343 234444455555666644444443 566666522 11 012247889999754332 3333
Q ss_pred -ECCEEEEEe-CCCCHHHHHHHHHHh
Q 027904 186 -KNGALVEAF-PTRDKERIDAAILKY 209 (217)
Q Consensus 186 -k~G~~v~~~-~g~~~~~l~~~i~~~ 209 (217)
++|.+..+. ...+.++|-..|+..
T Consensus 86 GKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 86 GKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred eCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 788777776 568999999888754
No 299
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=35.36 E-value=2.3e+02 Score=22.56 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCEEEEEEEccCCcchhHHHHHHcCCCC---------------CcEEEEEE-CCEEEEEe-CCCCHHHHHHHHHHhcc
Q 027904 151 APVIFLKHNVIDEYDEQSEVAERLKIKT---------------VPLFHFYK-NGALVEAF-PTRDKERIDAAILKYTS 211 (217)
Q Consensus 151 ~~v~~~~Vd~~d~~~~~~~l~~~~~I~~---------------~Pt~~~~k-~G~~v~~~-~g~~~~~l~~~i~~~~~ 211 (217)
+.+..+.-+. +...++++.|+|.. -..++++. +|+.+..+ .+.+++.|.+.|++.+.
T Consensus 132 ~~~~~ltg~~----~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 132 PRWIGLTGTP----EQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CCeeeeeCCH----HHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 3566666555 77788888888763 22344454 99999888 55678999999888764
No 300
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.91 E-value=88 Score=20.17 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=24.1
Q ss_pred CcEEEEEECCEEEEEeCCCCHHHHHHHHHHhcc
Q 027904 179 VPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 179 ~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~ 211 (217)
=|++++|.+| .-+...+++...+++++++.
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHh
Confidence 4999999999 23356789999999999874
No 301
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=34.72 E-value=1.2e+02 Score=19.84 Aligned_cols=69 Identities=13% Similarity=0.019 Sum_probs=36.0
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEEC-CEEEEEeCCCCHHHHHH
Q 027904 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKN-GALVEAFPTRDKERIDA 204 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~-G~~v~~~~g~~~~~l~~ 204 (217)
-+||+.|.+..-.+....- .+.+..++..+.......+ +.-....+|+++ .+ |..+. +...|.+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i-------~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~--~~~~~~l~-----eS~aI~~ 77 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL-------EYKTVPVEFPDIPPILGEL-TSGGFYTVPVIV--DGSGEVIG-----DSFAIAE 77 (84)
T ss_pred CCcCChhHHHHHHHHhCCC-------CCeEEEecCCCcccccccc-cCCCCceeCeEE--ECCCCEEe-----CHHHHHH
Confidence 4688999887755554322 2445555542110111112 112345789874 34 65543 5667777
Q ss_pred HHHHh
Q 027904 205 AILKY 209 (217)
Q Consensus 205 ~i~~~ 209 (217)
+|.+.
T Consensus 78 yL~~~ 82 (84)
T cd03038 78 YLEEA 82 (84)
T ss_pred HHHHh
Confidence 77654
No 302
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=34.65 E-value=1.5e+02 Score=20.32 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=21.9
Q ss_pred CEEEEEEEccCCcchhHHHHHHcC----CCCCcEEEEEECCEEEE
Q 027904 152 PVIFLKHNVIDEYDEQSEVAERLK----IKTVPLFHFYKNGALVE 192 (217)
Q Consensus 152 ~v~~~~Vd~~d~~~~~~~l~~~~~----I~~~Pt~~~~k~G~~v~ 192 (217)
++.|-.+|+..+.+.-.++.++-+ -..+|.+ |-+++.++
T Consensus 30 ~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQI--Fi~~~~iG 72 (92)
T cd03030 30 KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQI--FNGDEYCG 72 (92)
T ss_pred CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEE--EECCEEee
Confidence 588999999443233334444433 3556764 35666664
No 303
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=33.68 E-value=63 Score=28.09 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=39.8
Q ss_pred chhHHHHHHcCCCCCcEEEEEE--CCEEEEEe-CCCCHHHHHHHHHHhccCCC
Q 027904 165 DEQSEVAERLKIKTVPLFHFYK--NGALVEAF-PTRDKERIDAAILKYTSTTS 214 (217)
Q Consensus 165 ~~~~~l~~~~~I~~~Pt~~~~k--~G~~v~~~-~g~~~~~l~~~i~~~~~~~~ 214 (217)
.+...+..-|.+..+|.+.+++ -|+.+.+. +-..++.|..-+++++..-.
T Consensus 141 seg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~~~ 193 (356)
T KOG1364|consen 141 SEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDSCP 193 (356)
T ss_pred CCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhcCC
Confidence 5667788899999999888885 89999888 44668888888888875543
No 304
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=33.54 E-value=76 Score=26.79 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=55.7
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcch---hHHHHHHcCCCC
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDE---QSEVAERLKIKT 178 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~---~~~l~~~~~I~~ 178 (217)
+.+.|.++++..++...-+...++.++|..-..=.....+|+++.. +.++--+- +..+ -.++|++++.
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD-----~miVIGg~--~SsNT~kL~eia~~~~~-- 236 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVD-----AMIVIGGK--NSSNTRKLAEIAKEHGK-- 236 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSS-----EEEEES-T--T-HHHHHHHHHHHHCTT--
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCC-----EEEEecCC--CCccHHHHHHHHHHhCC--
Confidence 5677777776665445555556899999988887778888877643 33332222 1122 2356777664
Q ss_pred CcEEEE----------EECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 179 VPLFHF----------YKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 179 ~Pt~~~----------~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
|++.+ |++.+.++-. |..+++.+.+-+.+.+
T Consensus 237 -~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l 278 (281)
T PF02401_consen 237 -PTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRL 278 (281)
T ss_dssp -CEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH
T ss_pred -CEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 66665 2344566666 5577887777766654
No 305
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.11 E-value=59 Score=23.44 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=42.7
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcC--CCCCcEEEEEECCEEE---EEeCC----CC
Q 027904 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLK--IKTVPLFHFYKNGALV---EAFPT----RD 198 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~--I~~~Pt~~~~k~G~~v---~~~~g----~~ 198 (217)
.|++|..+.-.+...-.. ...+.+..|+... --.++....| =++.|.+++=.+.... ...++ .+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l----~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d 95 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDL----RERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDD 95 (112)
T ss_pred ECCchHHHHhHHhhChhh----hhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCC
Confidence 499999887666544332 2247888888721 1123333333 2689998875322111 11222 46
Q ss_pred HHHHHHHHHHhc
Q 027904 199 KERIDAAILKYT 210 (217)
Q Consensus 199 ~~~l~~~i~~~~ 210 (217)
.+.|...|.+.-
T Consensus 96 ~~~I~~~La~r~ 107 (112)
T PF11287_consen 96 PRRILRYLAERH 107 (112)
T ss_pred HHHHHHHHHHHc
Confidence 678877776654
No 306
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=32.94 E-value=58 Score=26.25 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEE-ECCEEE
Q 027904 140 SKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFY-KNGALV 191 (217)
Q Consensus 140 ~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~-k~G~~v 191 (217)
.++.+.+.. .+.| +....|.++|+|+.+|+++.- .+|+.+
T Consensus 157 ~~~~~~l~~---~vYf---------dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 157 PEMSKALDS---RIYF---------DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred HHHHHHhCC---ceEE---------cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 555566654 4555 666779999999999998862 666654
No 307
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=32.70 E-value=2e+02 Score=21.07 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=36.0
Q ss_pred CEEEEEEEccCC------cchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHHHhcc
Q 027904 152 PVIFLKHNVIDE------YDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAILKYTS 211 (217)
Q Consensus 152 ~v~~~~Vd~~d~------~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~~~~~ 211 (217)
++.+.+.|..++ +..-..+.++-|...+|-++ -||+++..-..-+.++|.+|+.-...
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVKTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEEESS---HHHHHHHHT--GG
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEEecCCCCHHHHHHHhCCCcc
Confidence 589999998543 12234556677899999755 58998888777889999999875543
No 308
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=32.17 E-value=1.3e+02 Score=18.82 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred CCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHH
Q 027904 126 RTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAA 205 (217)
Q Consensus 126 a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~ 205 (217)
.+||+.|++..-.+... + +.|-.+++ +... .-.-..+|++.. +|+.+. +...|.++
T Consensus 13 ~s~sp~~~~v~~~L~~~-----~----i~~~~~~~----~~~~----~~p~g~vP~l~~--~g~~l~-----es~~I~~y 68 (72)
T cd03054 13 PSLSPECLKVETYLRMA-----G----IPYEVVFS----SNPW----RSPTGKLPFLEL--NGEKIA-----DSEKIIEY 68 (72)
T ss_pred CCCCHHHHHHHHHHHhC-----C----CceEEEec----CCcc----cCCCcccCEEEE--CCEEEc-----CHHHHHHH
Confidence 46999999887665542 2 33333444 1110 112346898753 565442 33566666
Q ss_pred HHH
Q 027904 206 ILK 208 (217)
Q Consensus 206 i~~ 208 (217)
|++
T Consensus 69 L~~ 71 (72)
T cd03054 69 LKK 71 (72)
T ss_pred Hhh
Confidence 654
No 309
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=31.88 E-value=1.6e+02 Score=22.63 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHhCCCCCCEEEEEEEccCC------cchhHHHHHHcCCCCCcEEEEE
Q 027904 134 YIEQGFSKLCKGSGDQEAPVIFLKHNVIDE------YDEQSEVAERLKIKTVPLFHFY 185 (217)
Q Consensus 134 ~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~------~~~~~~l~~~~~I~~~Pt~~~~ 185 (217)
.+...|+...+.. .+.++.||..|. ..+-.+|..+-...++|.+++=
T Consensus 77 rfrsmWerycR~v-----~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 77 RFRSMWERYCRGV-----SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred cHHHHHHHHhhcC-----cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 4445566666654 367778887552 1233456666678899988873
No 310
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=30.87 E-value=2.6e+02 Score=21.87 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=34.0
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHH
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERID 203 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~ 203 (217)
++...|++|++..=.+.... +.+-.+++.. +......+-.....+|++.. .+|..+. +...|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~g---------l~~e~~~~~~--~~~~~~~~~np~g~vP~l~~-~~g~~l~-----es~~I~ 65 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKN---------IPVEKHVLLN--DDEETPIRMIGAKQVPILQK-DDGRAMP-----ESLDIV 65 (209)
T ss_pred ecCCCCChHHHHHHHHHHcC---------CCeEEEECCC--CcchhHHHhcCCCCcceEEe-eCCeEec-----cHHHHH
Confidence 45677999987665444332 2222234311 22222233333567897643 5665543 334455
Q ss_pred HHHHHh
Q 027904 204 AAILKY 209 (217)
Q Consensus 204 ~~i~~~ 209 (217)
++|.+.
T Consensus 66 ~yL~~~ 71 (209)
T TIGR02182 66 AYFDKL 71 (209)
T ss_pred HHHHHh
Confidence 555543
No 311
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=30.70 E-value=2.9e+02 Score=22.38 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=41.2
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027904 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~ 207 (217)
.|+.|+.+.-.+. .+.. .+.+-.||+. ...+.+.+-..-..+|.+.+ +|+.+ .+.+.|+++|+
T Consensus 20 dcpf~qr~~m~L~---~k~~----~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~--d~~~~-----tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV----PFKVTTVDLS---RKPEWFLDISPGGKPPVLKF--DEKWV-----TDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHH---HcCC----CceEEEeecC---CCcHHHHhhCCCCCCCeEEe--CCcee-----ccHHHHHHHHH
Confidence 4777776655544 2221 4778888882 23334445555566665443 33322 47889999999
Q ss_pred HhccCC
Q 027904 208 KYTSTT 213 (217)
Q Consensus 208 ~~~~~~ 213 (217)
+.+.+.
T Consensus 83 e~l~~p 88 (221)
T KOG1422|consen 83 EKLPPP 88 (221)
T ss_pred HhcCCC
Confidence 888654
No 312
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=30.64 E-value=1.4e+02 Score=18.77 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=36.9
Q ss_pred CChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHHHHHHH
Q 027904 128 SCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERIDAAIL 207 (217)
Q Consensus 128 wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l~~~i~ 207 (217)
+|++|++..=.+....-. . .+.++ .+..+.......+.+--.-..+|+++. .+|+.+. +-..|.++|+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~--~---~~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~-----eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLP--Y---EIKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN-----ESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGT--C---EEEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE-----SHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCC--C---EEEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEee-----CHHHHHHHHh
Confidence 588888876555554332 2 23333 121111122245665556678999876 4777554 5666777776
Q ss_pred H
Q 027904 208 K 208 (217)
Q Consensus 208 ~ 208 (217)
+
T Consensus 69 ~ 69 (70)
T PF13409_consen 69 E 69 (70)
T ss_dssp H
T ss_pred c
Confidence 5
No 313
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=29.92 E-value=1.6e+02 Score=27.78 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=46.7
Q ss_pred HHhhhcCCCeEEEEEECCCChhhH------HhHHHHHHHHHH-------hCCCCCCEEEEEEE-ccCCcchhHHHHHHcC
Q 027904 110 LEKSKETGSLVVVDFYRTSCGSCK------YIEQGFSKLCKG-------SGDQEAPVIFLKHN-VIDEYDEQSEVAERLK 175 (217)
Q Consensus 110 l~~a~~~~k~vlV~F~a~wC~~C~------~~~p~l~~l~~~-------~~~~~~~v~~~~Vd-~~d~~~~~~~l~~~~~ 175 (217)
|..|--.++|++|--.|+--+.|- ++.|.+++.... +.-.-++..|+.++ ++.+....-+-..++|
T Consensus 336 irrAV~egRPIiiRHHaDaDG~~agvAlE~AilplI~~~~~d~DAeyh~~KRrPskAPfYeleDvtrDl~~aLED~~RhG 415 (715)
T COG1107 336 IRRAVLEGRPIIIRHHADADGYCAGVALEKAILPLIEDVHPDEDAEYHLFKRRPSKAPFYELEDVTRDLNFALEDAHRHG 415 (715)
T ss_pred HHHHHhcCCceEEecccCcccccchhhHHHHHHHHHHHhCCChhhhhHHhhcCcccCCceeHHhhhhhHHHHHHHHHhcC
Confidence 334434589999999999999994 445555554321 11111345666653 2111112223356777
Q ss_pred CCCCcEEEEEECCE
Q 027904 176 IKTVPLFHFYKNGA 189 (217)
Q Consensus 176 I~~~Pt~~~~k~G~ 189 (217)
..+|.++++.||.
T Consensus 416 -qKlPL~VlvDnGs 428 (715)
T COG1107 416 -QKLPLLVLVDNGS 428 (715)
T ss_pred -CccceEEEEcCCC
Confidence 7899999999884
No 314
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=29.31 E-value=44 Score=29.20 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=43.2
Q ss_pred ChhhHH----hHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCC-C-CcEEEEEECCEEEEEe-CC-CCHH
Q 027904 129 CGSCKY----IEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIK-T-VPLFHFYKNGALVEAF-PT-RDKE 200 (217)
Q Consensus 129 C~~C~~----~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~-~-~Pt~~~~k~G~~v~~~-~g-~~~~ 200 (217)
||.|-+ +.....++.+.+......+.++-+-|.-|.... .--..||+. + --...+|++|+.+.+. .. .-.+
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGE-a~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGE-AKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHH-CTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCch-hhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 666643 334444555555544346888888773321111 011235554 3 2347889999999998 44 4567
Q ss_pred HHHHHHHHh
Q 027904 201 RIDAAILKY 209 (217)
Q Consensus 201 ~l~~~i~~~ 209 (217)
.|.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888888775
No 315
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=28.82 E-value=53 Score=26.07 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCCh--hhH
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCG--SCK 133 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~--~C~ 133 (217)
+..+.|.++|.+.+.+ ++.+ .++||+ .|-
T Consensus 128 ~~~~~~~~e~~~~~~~----~~~v----~~~wcg~~~~e 158 (202)
T cd00862 128 TRIVDTWEEFKEALNE----KGIV----LAPWCGEEECE 158 (202)
T ss_pred eEeeCCHHHHHHHHhc----CCEE----EEEecCCHHHH
Confidence 6667788889888865 4443 368996 554
No 316
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=28.68 E-value=2.3e+02 Score=24.11 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-CCcchhHHHHHHcCCCCCc
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-DEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~-d~~~~~~~l~~~~~I~~~P 180 (217)
+.+.|++++...++...-+.+.++.++|..-..=.....+|++... +.++--+-. .|...-.++|++++ .|
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD-----~miVVGg~~SsNT~kL~~i~~~~~---~~ 238 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQAD-----LVIVVGSKNSSNSNRLREVAEEAG---AP 238 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCC-----EEEEECCCCCccHHHHHHHHHHHC---CC
Confidence 5677777776654333334444589999888887788888888653 333322210 11122345676665 45
Q ss_pred EEEE----------EECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 181 LFHF----------YKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 181 t~~~----------~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
++.+ |++-+.++-. |..+++.|.+-+...+
T Consensus 239 t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 239 AYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred EEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 5554 2334455555 4467776666555444
No 317
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=28.23 E-value=2.6e+02 Score=20.96 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=47.2
Q ss_pred CCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCC--cEEEEEECCEEEE
Q 027904 116 TGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTV--PLFHFYKNGALVE 192 (217)
Q Consensus 116 ~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~--Pt~~~~k~G~~v~ 192 (217)
.+++-+|.+|-.-|+-|-.....+.+.- .. ..+.|+.+.. +....+.+..++..- =++++.++|+...
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~---~~i~f~~~q~----e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~ 74 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRD--QG---GRIRFAALQS----EPGQALLEAAGLDPEDVDSVLLVEAGQLLV 74 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhc--cC---CcEEEEeccC----chhhhHHhhcCCChhhhheeeEecCCceEe
Confidence 3677788899999999998665555431 22 2588888876 777777888877543 3455557777654
No 318
>PRK10853 putative reductase; Provisional
Probab=27.63 E-value=72 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=17.7
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+-+.|..|++....|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4467899999999998777753
No 319
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=27.01 E-value=1.7e+02 Score=18.47 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=40.5
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEEEEeCCCCHHHH
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALVEAFPTRDKERI 202 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~g~~~~~l 202 (217)
.|+.+-++.|+...-.++...- .+....+|..+.....+++........+|++. .+|..+. ....|
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~-------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~l~-----eS~aI 68 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKI-------PFEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFTLA-----ESVAI 68 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCC-------CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEEEE-----cHHHH
Confidence 4667788899877655554322 24555566522111224556666677899885 4665443 33445
Q ss_pred HHHHHH
Q 027904 203 DAAILK 208 (217)
Q Consensus 203 ~~~i~~ 208 (217)
..+|.+
T Consensus 69 ~~Yl~~ 74 (76)
T cd03050 69 LRYLAR 74 (76)
T ss_pred HHHHHh
Confidence 555543
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=25.91 E-value=3.7e+02 Score=22.00 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhhh---------cCCCeEEEEEECCCChhh-----------------HHhHHHHHHHHHHhCCCCCCEE
Q 027904 101 KTDAEFFKILEKSK---------ETGSLVVVDFYRTSCGSC-----------------KYIEQGFSKLCKGSGDQEAPVI 154 (217)
Q Consensus 101 ~s~~~f~~~l~~a~---------~~~k~vlV~F~a~wC~~C-----------------~~~~p~l~~l~~~~~~~~~~v~ 154 (217)
.+.+++.+.+..+. -.++++.|..++|.|+.. ..+...++++...|-.....+.
T Consensus 87 ~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~II 166 (240)
T smart00053 87 TDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLI 166 (240)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeE
Confidence 35556665554432 124678899999988543 2344556666666543333577
Q ss_pred EEEEEccCCcc--hhHHHHHHcCCCCCcEEEEEE
Q 027904 155 FLKHNVIDEYD--EQSEVAERLKIKTVPLFHFYK 186 (217)
Q Consensus 155 ~~~Vd~~d~~~--~~~~l~~~~~I~~~Pt~~~~k 186 (217)
++-+|+..+.. ....+++.+.-.+.|++.++.
T Consensus 167 L~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViT 200 (240)
T smart00053 167 LAVTPANVDLANSDALKLAKEVDPQGERTIGVIT 200 (240)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEE
Confidence 77787643212 224788899888999998874
No 321
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=25.16 E-value=2.6e+02 Score=23.59 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=59.3
Q ss_pred CHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEcc-CCcchhHHHHHHcCCCCCc
Q 027904 102 TDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVI-DEYDEQSEVAERLKIKTVP 180 (217)
Q Consensus 102 s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~-d~~~~~~~l~~~~~I~~~P 180 (217)
+.++|.+++...+......-+.++.++|..-..=.....+|+++.. +.++--+-. .|...-.++|++.+ .|
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD-----~miVVGg~nSsNT~rL~ei~~~~~---~~ 236 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVD-----LMIVIGGKNSSNTTRLYEIAEEHG---PP 236 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCC-----EEEEECCCCCchHHHHHHHHHHhC---CC
Confidence 6677887776654222113345679999988888888889988753 333322210 01122335676665 56
Q ss_pred EEEE----------EECCEEEEEe-CCCCHHHHHHHHHHhc
Q 027904 181 LFHF----------YKNGALVEAF-PTRDKERIDAAILKYT 210 (217)
Q Consensus 181 t~~~----------~k~G~~v~~~-~g~~~~~l~~~i~~~~ 210 (217)
++++ |++.+.++-. |..+++.|.+-+.+.+
T Consensus 237 t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l 277 (280)
T TIGR00216 237 SYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKI 277 (280)
T ss_pred EEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 7665 3444556665 4567887777666654
No 322
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.91 E-value=1.9e+02 Score=20.19 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=38.4
Q ss_pred EECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCC---cchhHHHHHHcCCCCCcEEEEEECCEEEEEe-----C
Q 027904 124 FYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDE---YDEQSEVAERLKIKTVPLFHFYKNGALVEAF-----P 195 (217)
Q Consensus 124 F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~---~~~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~-----~ 195 (217)
|+-+.|..|+.....|++- ++.+-.+|...+ .++-..+...++.. +-. ++=+.|...... .
T Consensus 1 Y~~~~C~t~rka~~~L~~~---------gi~~~~~d~~k~p~s~~el~~~l~~~~~~-~~~-lin~~~~~~k~l~~~~~~ 69 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN---------GIEYEFIDYKKEPLSREELRELLSKLGNG-PDD-LINTRSKTYKELGKLKKD 69 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT---------T--EEEEETTTS---HHHHHHHHHHHTSS-GGG-GB-TTSHHHHHTTHHHCT
T ss_pred CcCCCCHHHHHHHHHHHHc---------CCCeEeehhhhCCCCHHHHHHHHHHhccc-HHH-HhcCccchHhhhhhhhhh
Confidence 5778999999998877763 356666777442 12334556666632 111 111233222222 2
Q ss_pred CCCHHHHHHHHHHh
Q 027904 196 TRDKERIDAAILKY 209 (217)
Q Consensus 196 g~~~~~l~~~i~~~ 209 (217)
..+.+++.+.|.++
T Consensus 70 ~~s~~e~i~~l~~~ 83 (110)
T PF03960_consen 70 DLSDEELIELLLEN 83 (110)
T ss_dssp TSBHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHhC
Confidence 45667777776654
No 323
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.66 E-value=1.1e+02 Score=22.41 Aligned_cols=22 Identities=5% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEECCCChhhHHhHHHHHHH
Q 027904 121 VVDFYRTSCGSCKYIEQGFSKL 142 (217)
Q Consensus 121 lV~F~a~wC~~C~~~~p~l~~l 142 (217)
+..|+-+.|..|++....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4467789999999988777764
No 324
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=24.44 E-value=1.3e+02 Score=23.47 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=24.1
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECC
Q 027904 99 EFKTDAEFFKILEKSKETGSLVVVDFYRT 127 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~ 127 (217)
.+.+.++++++++++.+.+++.+|+++.+
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46788999999988877788999999854
No 325
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=23.71 E-value=1.5e+02 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.7
Q ss_pred eeecCCH--HHHHHHHHhhhcCCCeEEEEE
Q 027904 97 VREFKTD--AEFFKILEKSKETGSLVVVDF 124 (217)
Q Consensus 97 v~~i~s~--~~f~~~l~~a~~~~k~vlV~F 124 (217)
...+.+. ++++++++++...+++.+|+.
T Consensus 124 ~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 124 GARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp EEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 3455667 999999999988899999874
No 326
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.92 E-value=70 Score=28.85 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=21.0
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhh
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSC 132 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C 132 (217)
..++.+.+-++|..+|.+ ++.++ +|||+.-
T Consensus 465 s~~~~v~~~~eF~~aL~~----k~iil----aPwcg~~ 494 (551)
T KOG4163|consen 465 SHIVKVNTWEEFVKALDQ----KKIIL----APWCGEI 494 (551)
T ss_pred hheeeeeeHHHHHHHhcc----CCEEE----ccccCcH
Confidence 356677788888888876 44443 8999753
No 327
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=22.77 E-value=2.7e+02 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHh
Q 027904 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYI 135 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~ 135 (217)
..+.+++.++|+++.+.+++.+|++..+ |+....+
T Consensus 159 ~~~~~eL~~ai~~Al~~~GpslIeV~~p-C~t~n~~ 193 (287)
T TIGR02177 159 SGDVAHLKEIIKEAINHKGYALVDILQP-CVTYNKI 193 (287)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEeCC-CCCCCcc
Confidence 3678999999999887889999999987 7776443
No 328
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=22.75 E-value=2e+02 Score=23.36 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=38.4
Q ss_pred eeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEc
Q 027904 97 VREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 97 v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
+.-....++..+.+..+++.++.+.++.+..|-+.-+. ..+.+ + ..++.+++...
T Consensus 86 V~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~-----~~l~~-~---gvd~~~~H~g~ 140 (217)
T COG0269 86 VLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA-----KWLKE-L---GVDQVILHRGR 140 (217)
T ss_pred EEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH-----HHHHH-h---CCCEEEEEecc
Confidence 34446778999999999989999999999999754332 22221 2 23577777665
No 329
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=22.44 E-value=2.7e+02 Score=22.65 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=25.7
Q ss_pred ecCCHHHHHHHHHhhhcCCCeEEEEEECCCCh
Q 027904 99 EFKTDAEFFKILEKSKETGSLVVVDFYRTSCG 130 (217)
Q Consensus 99 ~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~ 130 (217)
.+.+.+++.++++++...+++.+|++..+ |.
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~-C~ 202 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSP-CP 202 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECC-CC
Confidence 46788999999998877789999999876 44
No 330
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=21.92 E-value=2.1e+02 Score=17.78 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHcCCCCCcEEEEEECCEEE
Q 027904 123 DFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERLKIKTVPLFHFYKNGALV 191 (217)
Q Consensus 123 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~~I~~~Pt~~~~k~G~~v 191 (217)
.|+.+.|+.|.+..-.+....... .+..+.+|.. ...+++.+......+|.++. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-----~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-----DVELVLVNPW---SDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-----CcEEEEcCcc---cCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467888999997765444411111 3555555541 22345555556678997753 355444
No 331
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.82 E-value=2.7e+02 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHhhhcCCCeEEEEEECCCChhh
Q 027904 100 FKTDAEFFKILEKSKETGSLVVVDFYRTSCGSC 132 (217)
Q Consensus 100 i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C 132 (217)
+.+.+++.++++++.+.+.+.+|+...| |+..
T Consensus 166 ~~~~~~l~~~i~~Al~~~Gp~lIeV~~p-C~~~ 197 (280)
T PRK11869 166 SGDIEETKEILKEAIKHKGLAIVDIFQP-CVSF 197 (280)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCC
Confidence 4588999999999988899999999998 6554
No 332
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.78 E-value=2.6e+02 Score=23.81 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=38.5
Q ss_pred eecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHH----HHHHHHHhCCCCCCEEEEEEEc
Q 027904 98 REFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQG----FSKLCKGSGDQEAPVIFLKHNV 160 (217)
Q Consensus 98 ~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~----l~~l~~~~~~~~~~v~~~~Vd~ 160 (217)
..+.+..++.+.++++.+.+.+.+|.+++| |+.-....+. ..+++.+-. -+.++++|-
T Consensus 182 ~~~~~~~~l~~~i~~A~~~~Gps~I~v~sP-C~~~~~~~~~~~~~~~klAvetg----~~plye~~~ 243 (299)
T PRK11865 182 ASIGYPEDFMEKVKKAKEVEGPAYIQVLQP-CPTGWGFPPEKTIEIGRLAVETG----YWPLFEIEN 243 (299)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHhcC----ceeEEEEEC
Confidence 344678889999998887889999999998 6554332222 334444422 367777764
No 333
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.68 E-value=1.8e+02 Score=22.79 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=14.8
Q ss_pred HHHHHHcCCCCCcEEEEEE
Q 027904 168 SEVAERLKIKTVPLFHFYK 186 (217)
Q Consensus 168 ~~l~~~~~I~~~Pt~~~~k 186 (217)
..-+.+.||.++|+|++=.
T Consensus 169 ~~~A~~~Gv~GVP~fvv~~ 187 (209)
T cd03021 169 TDEALKYGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 3456778999999998854
No 334
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=21.61 E-value=78 Score=20.15 Aligned_cols=14 Identities=43% Similarity=0.987 Sum_probs=12.0
Q ss_pred CcEEEEEECCEEEE
Q 027904 179 VPLFHFYKNGALVE 192 (217)
Q Consensus 179 ~Pt~~~~k~G~~v~ 192 (217)
.|++.+|+||+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 57889999999885
No 335
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=21.53 E-value=5.7e+02 Score=22.56 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=61.4
Q ss_pred cceeecCCHHHHHHHHHhhhcCCCeEEEEEECCCChhhHHhHHHHHHHHHHhCCCCCCEEEEEEEccCCcchhHHHHHHc
Q 027904 95 ECVREFKTDAEFFKILEKSKETGSLVVVDFYRTSCGSCKYIEQGFSKLCKGSGDQEAPVIFLKHNVIDEYDEQSEVAERL 174 (217)
Q Consensus 95 ~~v~~i~s~~~f~~~l~~a~~~~k~vlV~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~v~~~~Vd~~d~~~~~~~l~~~~ 174 (217)
..|..|.+.-++...-.- ...+-+|-|+.+--+. ....|++.++.++. -+.|+.+ -++.+++++
T Consensus 146 dPVeiIn~~~e~~~Fe~i---ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p---~IkFfAt-------fd~~vAk~L 209 (383)
T PF01216_consen 146 DPVEIINNKHELKAFERI---EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP---YIKFFAT-------FDKKVAKKL 209 (383)
T ss_dssp SSEEEE-SHHHHHHHHH-----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT---TSEEEEE--------SHHHHHHH
T ss_pred cchhhhcChhhhhhhhhc---ccceeEEEEeCCCCcH---HHHHHHHHHHhhcC---ceeEEEE-------ecchhhhhc
Confidence 356677777776555432 1356666666664332 23467888888876 4888874 347889999
Q ss_pred CCCCCcEEEEEE--CCEEEEEe-CCCCHHHHHHHHHHhccCC
Q 027904 175 KIKTVPLFHFYK--NGALVEAF-PTRDKERIDAAILKYTSTT 213 (217)
Q Consensus 175 ~I~~~Pt~~~~k--~G~~v~~~-~g~~~~~l~~~i~~~~~~~ 213 (217)
+++ +=.+-||+ -.+++..- ...+.++|++||+++..+.
T Consensus 210 ~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rpt 250 (383)
T PF01216_consen 210 GLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPT 250 (383)
T ss_dssp T-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-S
T ss_pred Ccc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhH
Confidence 996 77788886 34555544 3468899999999987664
No 336
>PHA02151 hypothetical protein
Probab=21.19 E-value=51 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.1
Q ss_pred CCeEEEEEECCCCh
Q 027904 117 GSLVVVDFYRTSCG 130 (217)
Q Consensus 117 ~k~vlV~F~a~wC~ 130 (217)
+..-+|+||..||.
T Consensus 203 ~h~~~v~fy~kwct 216 (217)
T PHA02151 203 NHDRYVHFYKKWCT 216 (217)
T ss_pred cCceEEEEehhhcc
Confidence 34567899999995
Done!