Query 027909
Match_columns 217
No_of_seqs 138 out of 198
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xeu_A Ring finger protein 4; 98.6 6.7E-10 2.3E-14 75.2 -3.5 51 3-60 1-63 (64)
2 3ng2_A RNF4, snurf, ring finge 98.6 7.1E-10 2.4E-14 76.8 -4.3 52 2-60 7-70 (71)
3 4ap4_A E3 ubiquitin ligase RNF 98.5 8E-09 2.7E-13 78.4 -2.3 55 1-62 3-69 (133)
4 2egp_A Tripartite motif-contai 98.5 3.1E-08 1.1E-12 69.8 1.0 57 3-59 10-71 (79)
5 2d8t_A Dactylidin, ring finger 98.4 2.5E-08 8.4E-13 69.8 0.1 48 3-57 13-65 (71)
6 4ap4_A E3 ubiquitin ligase RNF 98.4 6.9E-09 2.4E-13 78.8 -3.1 52 2-60 69-132 (133)
7 1t1h_A Gspef-atpub14, armadill 98.4 3.4E-08 1.1E-12 69.9 -0.2 52 3-60 6-62 (78)
8 2djb_A Polycomb group ring fin 98.3 1.9E-08 6.5E-13 70.6 -2.4 51 3-60 13-69 (72)
9 2ect_A Ring finger protein 126 98.3 1.6E-07 5.3E-12 66.4 2.2 49 3-58 13-69 (78)
10 2ysl_A Tripartite motif-contai 98.3 6.8E-08 2.3E-12 67.2 0.2 50 3-56 18-72 (73)
11 2ecy_A TNF receptor-associated 98.3 2.3E-08 7.7E-13 69.0 -2.7 48 3-56 13-65 (66)
12 2ecn_A Ring finger protein 141 98.3 7E-08 2.4E-12 66.9 -0.5 52 3-62 13-69 (70)
13 2ecw_A Tripartite motif-contai 98.3 3.7E-08 1.3E-12 69.6 -2.0 58 3-61 17-79 (85)
14 1chc_A Equine herpes virus-1 r 98.3 1.5E-07 5.3E-12 64.7 1.1 51 1-60 1-57 (68)
15 2ecv_A Tripartite motif-contai 98.3 6.6E-08 2.3E-12 68.3 -1.1 57 3-60 17-78 (85)
16 3lrq_A E3 ubiquitin-protein li 98.2 5.1E-08 1.8E-12 72.9 -2.6 50 5-60 22-77 (100)
17 2c2l_A CHIP, carboxy terminus 98.2 1.5E-07 5.2E-12 79.4 -0.3 51 3-59 206-261 (281)
18 2csy_A Zinc finger protein 183 98.2 9.5E-08 3.2E-12 68.3 -1.4 44 2-52 12-60 (81)
19 2yur_A Retinoblastoma-binding 98.2 1.2E-07 3.9E-12 67.1 -1.8 45 3-52 13-63 (74)
20 2y43_A E3 ubiquitin-protein li 98.1 1.9E-07 6.4E-12 69.1 -1.0 47 5-58 22-74 (99)
21 1jm7_A BRCA1, breast cancer ty 98.1 1.9E-07 6.3E-12 69.8 -1.2 51 5-59 21-76 (112)
22 2kre_A Ubiquitin conjugation f 98.1 4.3E-07 1.5E-11 68.8 0.3 50 4-60 28-82 (100)
23 1g25_A CDK-activating kinase a 98.1 1.3E-07 4.3E-12 65.0 -3.0 51 5-61 3-63 (65)
24 1wgm_A Ubiquitin conjugation f 98.0 5.7E-07 2E-11 67.9 0.0 50 4-60 21-76 (98)
25 2vje_A E3 ubiquitin-protein li 98.0 3.2E-07 1.1E-11 63.9 -1.3 49 3-60 6-62 (64)
26 3hct_A TNF receptor-associated 98.0 2.3E-07 7.8E-12 71.0 -2.8 49 4-58 17-70 (118)
27 2kr4_A Ubiquitin conjugation f 98.0 3.4E-07 1.2E-11 67.1 -1.8 50 4-60 13-67 (85)
28 1bor_A Transcription factor PM 98.0 4.1E-06 1.4E-10 56.5 3.6 42 2-53 3-49 (56)
29 1jm7_B BARD1, BRCA1-associated 98.0 2.2E-06 7.6E-11 65.4 2.5 46 4-58 21-72 (117)
30 1rmd_A RAG1; V(D)J recombinati 98.0 3.1E-07 1.1E-11 69.7 -2.3 49 5-59 23-76 (116)
31 2ct2_A Tripartite motif protei 98.0 2.7E-07 9.4E-12 66.0 -2.8 54 3-60 13-75 (88)
32 2ecm_A Ring finger and CHY zin 98.0 6.8E-07 2.3E-11 58.8 -0.8 43 3-52 3-54 (55)
33 4ayc_A E3 ubiquitin-protein li 98.0 8.9E-07 3E-11 69.6 -0.4 42 5-53 53-99 (138)
34 3ztg_A E3 ubiquitin-protein li 98.0 3.2E-07 1.1E-11 66.7 -2.8 51 3-58 11-68 (92)
35 1iym_A EL5; ring-H2 finger, ub 97.9 2.6E-06 8.9E-11 56.1 1.8 43 3-52 3-54 (55)
36 2ckl_A Polycomb group ring fin 97.9 7.8E-07 2.7E-11 66.8 -0.9 44 4-54 14-63 (108)
37 3fl2_A E3 ubiquitin-protein li 97.9 3.6E-07 1.2E-11 70.3 -2.9 43 5-53 52-99 (124)
38 1z6u_A NP95-like ring finger p 97.9 8.2E-07 2.8E-11 71.5 -1.9 44 5-54 78-126 (150)
39 2ea6_A Ring finger protein 4; 97.9 2.8E-07 9.5E-12 63.0 -4.2 44 3-53 13-68 (69)
40 2bay_A PRE-mRNA splicing facto 97.9 7.1E-07 2.4E-11 62.2 -2.3 51 4-61 2-58 (61)
41 2ckl_B Ubiquitin ligase protei 97.9 1E-06 3.6E-11 70.7 -1.7 43 5-53 54-102 (165)
42 1x4j_A Ring finger protein 38; 97.8 1.2E-06 4.1E-11 61.6 -1.4 45 3-54 21-73 (75)
43 3l11_A E3 ubiquitin-protein li 97.8 3.1E-06 1E-10 64.1 0.5 43 5-53 15-62 (115)
44 2ecj_A Tripartite motif-contai 97.8 2.3E-06 7.7E-11 56.7 -0.9 41 3-47 13-58 (58)
45 2ysj_A Tripartite motif-contai 97.8 1.3E-06 4.5E-11 59.3 -2.3 41 3-47 18-63 (63)
46 2kiz_A E3 ubiquitin-protein li 97.7 1.6E-06 5.5E-11 59.8 -2.0 46 2-54 11-64 (69)
47 3knv_A TNF receptor-associated 97.7 1.2E-06 4.1E-11 69.9 -3.7 44 3-52 29-77 (141)
48 4ic3_A E3 ubiquitin-protein li 97.7 8.7E-06 3E-10 57.8 1.1 43 5-60 24-72 (74)
49 2vje_B MDM4 protein; proto-onc 97.7 2.2E-06 7.6E-11 59.4 -2.0 49 3-60 5-61 (63)
50 2ep4_A Ring finger protein 24; 97.7 3.5E-06 1.2E-10 58.8 -1.4 44 3-53 13-64 (74)
51 2l0b_A E3 ubiquitin-protein li 97.6 3.7E-06 1.3E-10 61.7 -1.6 44 3-53 38-89 (91)
52 3hcs_A TNF receptor-associated 97.6 2.8E-06 9.5E-11 68.4 -2.8 49 4-58 17-70 (170)
53 2ea5_A Cell growth regulator w 97.6 2E-05 6.9E-10 55.6 1.4 47 2-61 12-64 (68)
54 2ecg_A Baculoviral IAP repeat- 97.4 1.4E-05 4.8E-10 56.6 -0.9 43 5-60 25-73 (75)
55 2yu4_A E3 SUMO-protein ligase 97.4 7.9E-06 2.7E-10 60.6 -2.5 57 3-60 5-70 (94)
56 2ecl_A Ring-box protein 2; RNF 97.3 2.4E-05 8.1E-10 56.4 -0.5 44 5-55 15-78 (81)
57 1v87_A Deltex protein 2; ring- 97.3 1.3E-05 4.4E-10 60.3 -2.0 47 5-53 25-94 (114)
58 2f42_A STIP1 homology and U-bo 97.3 1.3E-05 4.6E-10 67.1 -2.3 51 4-60 105-160 (179)
59 2yho_A E3 ubiquitin-protein li 97.3 6.7E-05 2.3E-09 54.2 1.1 44 5-61 18-67 (79)
60 1e4u_A Transcriptional repress 96.8 0.00015 5.3E-09 52.5 -0.6 48 3-56 9-65 (78)
61 2d8s_A Cellular modulator of i 96.4 0.00029 9.8E-09 51.4 -1.2 47 3-54 13-71 (80)
62 4a0k_B E3 ubiquitin-protein li 96.3 0.00061 2.1E-08 53.3 0.0 41 6-53 49-112 (117)
63 1wim_A KIAA0161 protein; ring 96.3 5.5E-05 1.9E-09 55.5 -5.8 55 2-56 2-69 (94)
64 3dpl_R Ring-box protein 1; ubi 96.1 0.00057 2E-08 52.3 -1.2 41 5-52 37-100 (106)
65 3htk_C E3 SUMO-protein ligase 95.7 0.0016 5.4E-08 57.9 -0.3 51 3-58 179-237 (267)
66 1vyx_A ORF K3, K3RING; zinc-bi 93.6 0.0028 9.5E-08 43.8 -3.3 47 1-52 1-58 (60)
67 2y1n_A E3 ubiquitin-protein li 93.5 0.0057 1.9E-07 56.8 -2.5 55 2-59 329-385 (389)
68 2ct0_A Non-SMC element 1 homol 93.3 0.015 5.1E-07 42.1 0.0 45 3-52 13-63 (74)
69 3k1l_B Fancl; UBC, ring, RWD, 92.4 0.009 3.1E-07 55.3 -2.8 51 3-53 306-373 (381)
70 1fjk_A Cardiac phospholamban; 70.4 3.3 0.00011 27.9 2.8 13 204-216 32-44 (52)
71 2jvx_A NF-kappa-B essential mo 59.0 2.6 9E-05 25.2 0.6 12 42-53 4-15 (28)
72 2jny_A Uncharacterized BCR; st 53.6 4.5 0.00015 28.6 1.1 15 40-54 9-23 (67)
73 2kpi_A Uncharacterized protein 52.8 6.9 0.00024 26.5 1.9 16 40-55 9-24 (56)
74 2jr6_A UPF0434 protein NMA0874 52.7 6.8 0.00023 27.6 1.9 15 40-54 7-21 (68)
75 2js4_A UPF0434 protein BB2007; 50.6 7.1 0.00024 27.7 1.8 15 40-54 7-21 (70)
76 2pk7_A Uncharacterized protein 50.6 6.2 0.00021 27.9 1.5 14 40-53 7-20 (69)
77 2hf1_A Tetraacyldisaccharide-1 49.2 4.7 0.00016 28.5 0.6 15 40-54 7-21 (68)
78 3hd7_B Syntaxin-1A; membrane p 45.5 17 0.00058 27.3 3.3 20 196-215 80-99 (109)
79 1pft_A TFIIB, PFTFIIBN; N-term 42.9 9.5 0.00032 24.5 1.3 10 40-49 4-13 (50)
80 3m62_A Ubiquitin conjugation f 41.9 3.7 0.00013 42.1 -1.2 50 4-60 890-945 (968)
81 2oaj_A Protein SNI1; WD40 repe 41.4 22 0.00076 34.8 4.3 40 52-91 819-858 (902)
82 3vk6_A E3 ubiquitin-protein li 40.3 2.9 0.0001 32.1 -1.7 32 22-59 24-55 (101)
83 1yod_A Water-solublized phosph 40.1 19 0.00064 21.8 2.2 11 206-216 13-23 (30)
84 3vhs_A ATPase wrnip1; zinc fin 39.4 7.1 0.00024 23.3 0.3 12 41-52 6-17 (29)
85 1l8d_A DNA double-strand break 38.7 6.9 0.00024 28.9 0.1 14 41-54 47-60 (112)
86 3a43_A HYPD, hydrogenase nicke 37.5 6.1 0.00021 31.1 -0.3 37 14-50 64-116 (139)
87 1wd2_A Ariadne-1 protein homol 37.3 17 0.0006 24.7 2.0 15 40-54 5-19 (60)
88 2lat_A Dolichyl-diphosphooligo 34.9 22 0.00076 22.6 2.1 22 196-217 4-25 (37)
89 2kdx_A HYPA, hydrogenase/ureas 32.9 13 0.00043 28.1 0.8 32 15-51 68-100 (119)
90 1mm2_A MI2-beta; PHD, zinc fin 32.7 72 0.0025 21.2 4.6 49 2-54 6-60 (61)
91 1p7a_A BF3, BKLF, kruppel-like 31.8 17 0.00058 19.9 1.1 11 3-13 9-19 (37)
92 3e56_A Putative uncharacterize 31.1 17 0.00059 27.7 1.2 16 184-199 94-109 (113)
93 2fiy_A Protein FDHE homolog; F 30.3 17 0.00057 32.4 1.3 38 6-50 183-231 (309)
94 1rkl_A Dolichyl-diphosphooligo 29.6 25 0.00087 22.2 1.7 22 196-217 4-25 (36)
95 2elx_A Zinc finger protein 406 28.6 17 0.00058 19.5 0.7 10 3-12 5-14 (35)
96 4rxn_A Rubredoxin; electron tr 28.5 23 0.00079 23.9 1.4 15 42-58 37-51 (54)
97 3nw0_A Non-structural maintena 28.3 27 0.00092 29.7 2.1 48 3-54 178-230 (238)
98 2elr_A Zinc finger protein 406 28.2 21 0.00071 19.3 1.0 11 3-13 7-17 (36)
99 1jdm_A Sarcolipin; helix, memb 28.2 27 0.00091 21.3 1.5 12 204-215 14-25 (31)
100 2kvf_A Zinc finger and BTB dom 28.1 15 0.00052 18.7 0.4 8 5-12 3-10 (28)
101 2k5r_A Uncharacterized protein 27.6 29 0.00099 26.2 2.0 14 40-53 7-20 (97)
102 2elt_A Zinc finger protein 406 27.2 17 0.00059 19.7 0.5 11 3-13 7-17 (36)
103 2elq_A Zinc finger protein 406 26.3 18 0.00062 19.7 0.5 11 3-13 7-17 (36)
104 2kvh_A Zinc finger and BTB dom 25.3 18 0.00062 18.3 0.3 9 4-12 2-10 (27)
105 2elo_A Zinc finger protein 406 25.2 21 0.00072 19.5 0.7 11 3-13 7-17 (37)
106 1srk_A Zinc finger protein ZFP 25.0 19 0.00066 19.4 0.4 11 3-13 5-15 (35)
107 1k4u_P Phagocyte NADPH oxidase 24.2 22 0.00077 21.9 0.6 9 79-87 6-14 (32)
108 2kvg_A Zinc finger and BTB dom 23.6 18 0.00062 18.5 0.1 8 5-12 3-10 (27)
109 2elv_A Zinc finger protein 406 23.3 22 0.00076 19.3 0.5 10 3-12 7-16 (36)
110 2kn9_A Rubredoxin; metalloprot 23.2 34 0.0012 25.0 1.6 15 43-59 62-76 (81)
111 2yte_A Zinc finger protein 473 23.2 29 0.00099 19.5 1.0 13 2-14 7-19 (42)
112 1yk4_A Rubredoxin, RD; electro 23.2 36 0.0012 22.6 1.6 8 43-50 37-44 (52)
113 2els_A Zinc finger protein 406 22.6 23 0.00079 19.3 0.5 11 3-13 7-17 (36)
114 2eos_A B-cell lymphoma 6 prote 22.5 29 0.00098 19.7 0.9 12 3-14 9-20 (42)
115 1dx8_A Rubredoxin; electron tr 22.5 34 0.0012 24.1 1.4 15 43-59 42-56 (70)
116 2elm_A Zinc finger protein 406 22.4 19 0.00063 20.1 0.0 11 3-13 7-17 (37)
117 2elp_A Zinc finger protein 406 22.4 24 0.00081 19.4 0.5 11 3-13 7-17 (37)
118 2epv_A Zinc finger protein 268 22.3 24 0.00082 20.4 0.5 11 3-13 10-20 (44)
119 1njq_A Superman protein; zinc- 21.8 25 0.00086 19.6 0.5 10 3-12 4-13 (39)
120 2ytb_A Zinc finger protein 32; 21.7 34 0.0012 19.2 1.1 11 3-13 9-19 (42)
121 1ard_A Yeast transcription fac 21.4 30 0.001 17.4 0.8 9 5-13 2-10 (29)
122 3o36_A Transcription intermedi 21.2 1.5E+02 0.005 23.5 5.2 47 3-53 2-54 (184)
123 3ga8_A HTH-type transcriptiona 20.8 37 0.0013 23.6 1.4 13 42-54 3-16 (78)
124 2lvr_A Zinc finger and BTB dom 26.1 21 0.00072 18.2 0.0 9 5-13 3-11 (30)
125 3arc_L Photosystem II reaction 20.7 59 0.002 20.6 2.1 17 198-214 11-27 (37)
126 2eoj_A Zinc finger protein 268 20.7 30 0.001 19.7 0.7 11 3-13 10-20 (44)
127 6rxn_A Rubredoxin; electron tr 20.6 29 0.001 22.7 0.7 9 42-50 31-39 (46)
128 1e8j_A Rubredoxin; iron-sulfur 20.5 31 0.001 23.0 0.8 8 43-50 38-45 (52)
129 2en7_A Zinc finger protein 268 20.5 36 0.0012 19.3 1.1 12 3-14 10-21 (44)
130 2v3b_B Rubredoxin 2, rubredoxi 20.3 30 0.001 23.3 0.8 8 43-50 38-45 (55)
131 2eq1_A Zinc finger protein 347 20.3 38 0.0013 19.5 1.2 14 2-15 9-22 (46)
132 3dl8_E Protein-export membrane 20.2 52 0.0018 25.1 2.1 21 195-215 47-68 (107)
133 2emz_A ZFP-95, zinc finger pro 20.0 38 0.0013 19.6 1.1 12 3-14 10-21 (46)
134 2en9_A Zinc finger protein 28 20.0 38 0.0013 19.6 1.1 13 2-14 9-21 (46)
No 1
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.64 E-value=6.7e-10 Score=75.19 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
++.++|.||+|.-++| +++ ||..||.+|+. ....||+|+..++.+.++|||
T Consensus 1 g~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH-------HCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH-------cCCCCCCCCccCCccceeeee
Confidence 4678999999988776 555 99999999964 357999999999999999998
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.60 E-value=7.1e-10 Score=76.84 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=44.6
Q ss_pred CCCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 2 EQNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 2 ~~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
.++.++|.||+|.-++| +++ ||+.||.+|+. ....||+|+..+..+.++|||
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-------HCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-------cCCCCCCCCCccChhheeecc
Confidence 35678999999998777 454 99999999964 447999999999999999998
No 3
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.46 E-value=8e-09 Score=78.45 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCCCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeecC
Q 027909 1 MEQNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGR 62 (217)
Q Consensus 1 m~~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYGR 62 (217)
|..+.++|.||+|.-++| |++ ||+.||.+|+. ....||+|+..+....+.++|-.
T Consensus 3 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp --CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-------TCSBCTTTCCBCTTTCEEECBCS
T ss_pred cCCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-------hCCCCCCCCCcCccccccccccC
Confidence 567889999999999888 665 99999999975 44699999999999999999964
No 4
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-08 Score=69.75 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=45.1
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
++.++|.||++.-++||++ ||+.||..|+............||+|+..+..+.+.|-
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 3578999999999999987 99999999976422222346899999999988766553
No 5
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.5e-08 Score=69.83 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=41.5
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccccccee
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLV 57 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~vi 57 (217)
.+.++|.||+|.-++||++ ||+.||..|+. ....||+|+..|..+.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-------LGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-------CSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-------CCCcCcCcCchhCHhhcc
Confidence 3568999999999999987 99999999975 347999999999987664
No 6
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.43 E-value=6.9e-09 Score=78.80 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=45.5
Q ss_pred CCCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 2 EQNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 2 ~~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
+++..+|.||++.-+++ |++ ||+.||..|+. ....||+|++.|.++.|+|||
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-------HCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-------cCCCCCCCCCcCChhcceeee
Confidence 46778999999988876 555 99999999974 457999999999999999999
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.39 E-value=3.4e-08 Score=69.89 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=44.7
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
.+.|.|.||++.-+|||++ ||+.||..|+.. ....||+|+..++.+.++|-+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~------~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA------GHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT------TCCBCTTTCCBCSSCCCEECT
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH------CcCCCCCCcCCCChhhCccCH
Confidence 3579999999999999997 999999999741 368999999999988888743
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.9e-08 Score=70.60 Aligned_cols=51 Identities=12% Similarity=-0.049 Sum_probs=43.7
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
++.++|.||+|.-++||++ ||+.||..|+. ....||+|+..|..+.+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY-------YSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-------HCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-------cCCcCCCcCcccCcccccccC
Confidence 4568999999999999874 99999999964 357999999999998887654
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.34 E-value=1.6e-07 Score=66.42 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred CCCCccccccCCCCCcc---eE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceee
Q 027909 3 QNLFEPETGYATEEDAS---LK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVP 58 (217)
Q Consensus 3 ~s~FeCnICld~A~dpV---VT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viP 58 (217)
+..++|.||+|.-.++. ++ ||+.||.+|+. ....||+|++.|....++|
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-------QHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-------TTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-------cCCcCcCcCCccCCcccCC
Confidence 46789999998766543 22 99999999974 3479999999998877765
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=6.8e-08 Score=67.19 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccce
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASL 56 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~v 56 (217)
+..++|.||+|.-++||++ ||+.||..|+.. ......||+|+..|..+.+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET----SCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS----SCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc----CCCCCCCCCCCCcCCcccC
Confidence 4578999999999999997 999999999752 2356799999999988764
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.3e-08 Score=68.97 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=41.5
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccce
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASL 56 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~v 56 (217)
++.++|.||++.-++||++ ||+.||..|+. .....||+|+..+..+.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS------SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT------TSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH------hCcCCCCCCCcCCChhhc
Confidence 4578999999999999998 99999999974 245789999999998765
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=7e-08 Score=66.89 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeecC
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYGR 62 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYGR 62 (217)
.+.++|.||+|.-.+ +++ ||+.||..|+. ....||+|+..|.....+.++-.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~~~~~~~~~ 69 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-------RHRNCPICRLQMTGANESSGPSS 69 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-------CCSSCHHHHHCTTCCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-------CcCcCCCcCCcccCCCccccCCC
Confidence 456899999999999 665 99999999975 46899999999998776666543
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.29 E-value=3.7e-08 Score=69.61 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeec
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYG 61 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYG 61 (217)
+..++|.||++.-++||++ ||+.||..|+.... .......||+|+..+..+.+.|-+-
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-NTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-CTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-CCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 3578999999999999987 99999999865210 0123689999999999988887653
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.28 E-value=1.5e-07 Score=64.66 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=41.9
Q ss_pred CCCCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 1 MEQNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 1 m~~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
|+....+|.||++.-++|++. ||+.|+..|+. ....||+|+..+. .++..+
T Consensus 1 ~~~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-------~~~~CP~Cr~~~~--~~~~~~ 57 (68)
T 1chc_A 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-------QNPTCPLCKVPVE--SVVHTI 57 (68)
T ss_dssp CCCCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-------HSCSTTTTCCCCC--CEECCC
T ss_pred CCCCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-------CcCcCcCCChhhH--hhhhcc
Confidence 778889999999999998654 99999999964 4479999999987 444444
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=6.6e-08 Score=68.31 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=44.4
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
++.++|.||++.-++|+++ ||+.||..|+.... .......||+|+..+..+.+.|-+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-LDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-HTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-cCCCCCcCCCCCCccCHHhcCccH
Confidence 3578999999999999987 99999999864200 011368999999999988776654
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.22 E-value=5.1e-08 Score=72.93 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCccccccCCCCCcce-E-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 5 LFEPETGYATEEDASL-K-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 5 ~FeCnICld~A~dpVV-T-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
.++|.||+|.-.+||+ + ||+.||..|+.. ....||+|+..++.+.+++.+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~------~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE------QRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHH------TCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHH------CcCCCCCCCCcCCHHHhHhhH
Confidence 4789999999999999 5 999999999642 226999999999999988765
No 17
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=1.5e-07 Score=79.39 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
...|.|.||++.-+|||++ ||+.||..|+.. ....||+|+..++.+.++|=
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~------~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH------TCSSCTTTCCCCCGGGCEEC
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHH------CCCCCcCCCCCCchhcCccc
Confidence 3579999999999999997 999999999641 22349999999999999983
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=9.5e-08 Score=68.28 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 2 EQNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
++..++|.||++.-++||++ ||+.||..|+. ....||+|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-------ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-------HCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-------CCCcCCCcCcccc
Confidence 45679999999999999997 99999999964 4679999999986
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.16 E-value=1.2e-07 Score=67.13 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=37.0
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
...++|.||+|.-++||++ ||+.||..|+.. .....||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-----SDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH-----SSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCCCCcCC
Confidence 3468999999999999987 999999999742 13479999999743
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.14 E-value=1.9e-07 Score=69.06 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceee
Q 027909 5 LFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVP 58 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viP 58 (217)
.++|.||++.-.+||++ ||+.||..|+. ....||+|+..+..+.++|
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-------YKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-------TCCBCTTTCCBCCGGGCEE
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-------CCCCCCCCCCcCChhhCCc
Confidence 48999999999999875 99999999975 3479999999999877766
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=1.9e-07 Score=69.81 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=41.4
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
.++|.||++.-++||++ ||+.||..|+... .....||+|+..++.+.+++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK----KGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS----SSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC----CCCCCCcCCCCcCCHhhcCcc
Confidence 57899999999999997 9999999997521 234689999999987766553
No 22
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.11 E-value=4.3e-07 Score=68.82 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=44.8
Q ss_pred CCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 4 NLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
..|-|.||++.=+|||++ ||..||..|+. .+..||+|+..++.+.|+|-+
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-------~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-------NSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-------SCSBCSSSCCBCCTTSSEECH
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-------cCCCCCCCCCCCChhhceECH
Confidence 579999999999999997 99999999964 357899999999999999965
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.07 E-value=1.3e-07 Score=64.98 Aligned_cols=51 Identities=12% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CCccccccC-CCCCcc----eE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeec
Q 027909 5 LFEPETGYA-TEEDAS----LK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYG 61 (217)
Q Consensus 5 ~FeCnICld-~A~dpV----VT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYG 61 (217)
.++|.||++ .-.+|+ ++ ||+.||.+|.. .....||+|+..++.++++|.+-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV------RGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH------TTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH------cCCCcCCCCCCccccccceeecc
Confidence 478999999 666663 44 99999999853 13568999999999999999763
No 24
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.05 E-value=5.7e-07 Score=67.90 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=44.6
Q ss_pred CCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 4 NLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
..|-|.||++.=+|||++ ||..||..|+. .+..||+|+..++.+.|+|-+
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~-------~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-------SDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-------TSCBCTTTCSBCCTTTSEECH
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHH-------hCCCCCCCCCCCChhhceEcH
Confidence 579999999999999987 99999999964 256899999999999999965
No 25
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.04 E-value=3.2e-07 Score=63.89 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=41.1
Q ss_pred CCCCccccccCCCCCcceE--------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK--------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT--------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
++..+|.||+|..+|+|+. +||.|+..|.. ....||+|++.|. ++|.||
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-------~~~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-------RNKPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-------TTCCCTTTCCCCC--EEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-------cCCcCCCcCcchh--ceEeee
Confidence 4567899999999999974 79999998753 4568999999994 689988
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.02 E-value=2.3e-07 Score=71.05 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=41.9
Q ss_pred CCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceee
Q 027909 4 NLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVP 58 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viP 58 (217)
+.++|.||++.-.+||++ ||+.||..|+.. ....||+|+..+..+.++|
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRD------AGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH------HCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhh------CCCCCCCCCCCcCHHhccc
Confidence 458999999999999997 999999998642 2349999999999988776
No 27
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.01 E-value=3.4e-07 Score=67.10 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=44.7
Q ss_pred CCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 4 NLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
..|-|.||++.=+|||++ ||..||..|+. .+..||+|+..++.+.|+|-+
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-------~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-------NSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-------HCSBCTTTCCBCCGGGCEECH
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHh-------cCCCCCCCcCCCChHhcchHH
Confidence 579999999999999997 99999999964 357999999999999999864
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.00 E-value=4.1e-06 Score=56.49 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.4
Q ss_pred CCCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 2 EQNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
|.+.+.|.||++.-++|+++ ||+.||..| ...||+|++.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----------GMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----------SSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccC----------CCCCCcCCcEeec
Confidence 46788999999999999987 999999984 3589999998875
No 29
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.00 E-value=2.2e-06 Score=65.38 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceee
Q 027909 4 NLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVP 58 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viP 58 (217)
..+.|.||++.-.+||++ ||+.||..|+. ..||+|+..+....+.|
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---------~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---------TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---------TBCSSSCCBCSCSSCCC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---------CCCcCCCCcCccccccc
Confidence 358999999999999986 99999999853 68999999987655544
No 30
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.00 E-value=3.1e-07 Score=69.70 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=41.8
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
.++|.||++.-.+||++ ||+.||..|+.. ....||+|+..+..+.+++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKV------MGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH------TCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH------CcCcCCCCCCCCCHhhcccc
Confidence 47899999999999998 999999999742 24689999999998877653
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.7e-07 Score=65.95 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCccccccCCCCC----cceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEED----ASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~d----pVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
.+.++|.||++.-++ |+++ ||+.||..|+... .....||+|+..+..+.|..|+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCTTTCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCCCCCCcccchhHHHHH
Confidence 457899999999888 8886 9999999997421 2357999999999887654443
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.97 E-value=6.8e-07 Score=58.82 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=34.1
Q ss_pred CCCCccccccCCCCC----cceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 3 QNLFEPETGYATEED----ASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 3 ~s~FeCnICld~A~d----pVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
.+.++|.||+|.-.+ ++++ ||+.||.+|+. ....||+|+..|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-------EGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH-------HTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH-------cCCcCCCCCCcCC
Confidence 467899999997644 4443 99999999974 3389999998875
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.96 E-value=8.9e-07 Score=69.57 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
.+.|.||+|.-.+||++ ||+.||..|+. ....||+|+..|..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-------RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-------TCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHH-------cCCcCCCCCCcCCC
Confidence 46899999999999997 99999999964 45789999998864
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.96 E-value=3.2e-07 Score=66.66 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=40.9
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccc-cccceee
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANI-SVASLVP 58 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~V-s~~~viP 58 (217)
...+.|.||++.-.+||++ ||+.||..|+.. .....||+|+..+ ..+.++|
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-----SDEHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH-----CTTCCCTTTCCSSCCTTSCEE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh-----cCCCcCcCCCCcCCCccccCc
Confidence 3568999999999999986 999999998642 2347999999996 5556655
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=2.6e-06 Score=56.11 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=33.6
Q ss_pred CCCCccccccCCCCC---cceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 3 QNLFEPETGYATEED---ASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 3 ~s~FeCnICld~A~d---pVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
++..+|.||+|.-++ +++. ||..||.+|+. ....||+|++.|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-------~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-------SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-------TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-------cCCcCcCCCCEeE
Confidence 356799999998655 4432 89999999975 3578999998874
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.94 E-value=7.8e-07 Score=66.79 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=38.4
Q ss_pred CCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 4 NLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
..++|.||++.-.+||++ ||+.||..|+. ....||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-------SCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-------hCCcCcCCCcccccc
Confidence 468999999999999986 99999999975 348999999998865
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.94 E-value=3.6e-07 Score=70.25 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
.+.|.||++.-.+||++ ||..||..|+. .....||+|+..++.
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFR------AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH------TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh------HCcCCCCCCCccCCC
Confidence 47899999999999987 99999999864 244699999999976
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.88 E-value=8.2e-07 Score=71.46 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=38.3
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
.+.|.||+|.-.+||++ ||+.||..|+.. ....||+|+..+..+
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT------TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh------CCCcCCCCCccCCCC
Confidence 47899999999999998 999999999742 345899999999876
No 39
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=2.8e-07 Score=62.95 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=36.2
Q ss_pred CCCCccccccCCCCCc-------ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 3 QNLFEPETGYATEEDA-------SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 3 ~s~FeCnICld~A~dp-------VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
...++|.||+|.-+++ +++ ||..||..|+. ....||+|+..|+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH-------HCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH-------cCCCCCCCCCccCc
Confidence 4678999999988777 554 99999999964 35799999998864
No 40
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.86 E-value=7.1e-07 Score=62.24 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=44.0
Q ss_pred CCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeec
Q 027909 4 NLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYG 61 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYG 61 (217)
..|-|.||++.-+|||++ |+..||..|+. .+..|||++..++.+.|||++-
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-------~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-------DTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-------HHSBCTTTCCBCCGGGCEECCC
T ss_pred CeEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-------hCCCCcCCcCCCChhhcEECcc
Confidence 468999999999999997 99999999974 3356999999999999999974
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.86 E-value=1e-06 Score=70.74 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 5 LFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
.++|.||+|.-.+||++ ||+.||..|+. .....||+|+..|..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALR------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH------TTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH------hCcCCCCCCCCcCCC
Confidence 46899999999999986 99999999974 135789999999953
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.2e-06 Score=61.61 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=35.1
Q ss_pred CCCCccccccCCCCCc---ceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 3 QNLFEPETGYATEEDA---SLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 3 ~s~FeCnICld~A~dp---VVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
....+|.||++.-.++ +++ ||+.||.+|+. .+..||+|++.|...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~-------~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK-------ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH-------HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH-------cCCcCcCcCCcCCCC
Confidence 3457899999876655 333 99999999974 346899999998764
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.82 E-value=3.1e-06 Score=64.06 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=37.5
Q ss_pred CCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 5 LFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
.++|.||++.-.+||++ ||..||..|+.. ....||+|+..++.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK------ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT------TTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH------CcCCCCCCCcccCc
Confidence 57899999999999997 999999999742 35799999999875
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=2.3e-06 Score=56.72 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=34.2
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCc
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVC 47 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVC 47 (217)
...++|.||+|.-++||++ ||+.||.+|+... .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL----ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS----CCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc----CCCCCCCCC
Confidence 4578999999999999987 9999999996421 256899998
No 45
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=1.3e-06 Score=59.35 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=34.2
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCc
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVC 47 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVC 47 (217)
++.++|.||+|.-++||++ ||+.||.+|+.. ......||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET----SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH----CSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc----CCCCCcCcCC
Confidence 4578999999999999997 999999999742 1245799998
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.75 E-value=1.6e-06 Score=59.76 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=34.5
Q ss_pred CCCCCccccccCCC---CCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 2 EQNLFEPETGYATE---EDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 2 ~~s~FeCnICld~A---~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
++...+|.||++.- .+++++ ||+.||.+|+. ....||+|++.|...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-------~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-------TNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH-------HCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH-------cCCCCcCcCccccCc
Confidence 35678999998754 334444 99999999974 345799999998753
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.70 E-value=1.2e-06 Score=69.93 Aligned_cols=44 Identities=9% Similarity=-0.049 Sum_probs=37.0
Q ss_pred CCCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 3 QNLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
++.|.|.||++.-.+||.| ||+.||..|+. .....||+|+..|.
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~------~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS------SGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG------GSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh------cCCCCCCCCCCccc
Confidence 3568999999999999987 99999999964 23468999999764
No 48
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.69 E-value=8.7e-06 Score=57.76 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.7
Q ss_pred CCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 5 LFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
.++|.||+|...+||++ ||+.|+..| ..||+|+..|+. ++.||
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~CP~Cr~~i~~--~~~i~ 72 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----------DKCPMCYTVITF--KQKIL 72 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----------SBCTTTCCBCSE--EEECB
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----------ccCCCcCcCccC--cEEEe
Confidence 46899999999999986 899999987 589999999874 45555
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.69 E-value=2.2e-06 Score=59.41 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=40.1
Q ss_pred CCCCccccccCCCCCcceE--------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK--------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT--------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
+...+|.||+|..+|+++. +||.|+..|.. ....||+|+..|. ++|.||
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-------~~~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-------AGASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-------TTCBCTTTCCBCC--EEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-------hCCcCCCcCchhh--ceEEEe
Confidence 3457899999999999864 79999998742 3479999999994 688888
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=3.5e-06 Score=58.77 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=34.4
Q ss_pred CCCCccccccCCCCCcceE--------eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 3 QNLFEPETGYATEEDASLK--------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT--------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
....+|.||+|.-.+++.. ||+.||.+|+. .+..||+|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~-------~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-------VRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH-------HCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH-------cCCcCCCcCccccc
Confidence 4567999999987655422 89999999974 34699999998865
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.63 E-value=3.7e-06 Score=61.71 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=33.7
Q ss_pred CCCCccccccCCCCC---cceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 3 QNLFEPETGYATEED---ASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 3 ~s~FeCnICld~A~d---pVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
+...+|.||++.-.+ ++++ ||+.||..|+. .+..||+|+..|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-------cCCcCcCcCccCCC
Confidence 356789999976444 4444 99999999975 34699999998864
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.61 E-value=2.8e-06 Score=68.40 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=42.0
Q ss_pred CCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceee
Q 027909 4 NLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVP 58 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viP 58 (217)
..|+|.||++.-.+||.+ ||+.||..|+.. ....||+|+..++.+.++|
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~------~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRD------AGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH------HCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHh------CCCCCCCCccCcchhhhhh
Confidence 468999999999999987 999999998641 2349999999999987766
No 53
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=2e-05 Score=55.57 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeec
Q 027909 2 EQNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYG 61 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYG 61 (217)
+.+..+|.||+|...++|+. +||.|+.. .+.||+|++.|.. +|.||.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----------~~~CP~CR~~i~~--~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----------FQQCPMCRQFVQE--SFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----------CSSCTTTCCCCCC--EECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----------CCCCCCCCcchhc--eEEeec
Confidence 34578999999999999985 89999874 2699999999876 788885
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=1.4e-05 Score=56.59 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 5 LFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
..+|.||+|..++||++ ||+.|+.. ...||+|+..|.. ++.||
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----------~~~CP~Cr~~i~~--~~~i~ 73 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----------VDKCPMCYTVITF--KQKIF 73 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----------CSBCTTTCCBCCC--CCBCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----------CCCCccCCceecC--cEEEe
Confidence 35899999999999986 89999853 2699999999865 55555
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.40 E-value=7.9e-06 Score=60.58 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCC--cccc-ccccceeeee
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPV--CKAN-ISVASLVPLY 60 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPV--CKa~-Vs~~~viPLY 60 (217)
...|.|.||++.=+|||++ ||-.||..|+... ........||| |+.. ++.+.|+|=+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~-~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR-QKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH-HTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc-cCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 4568999999999999987 9999999996410 00012468999 9988 9999999854
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=2.4e-05 Score=56.40 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=33.6
Q ss_pred CCccccccCCCCC--------------cceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccc
Q 027909 5 LFEPETGYATEED--------------ASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVAS 55 (217)
Q Consensus 5 ~FeCnICld~A~d--------------pVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~ 55 (217)
.-+|.||++.-.+ +++. |+..||.+|+. .+..||+|+..+...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-------QNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-------TCCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-------hCCCCCCcCCCcchhh
Confidence 3468999887765 3332 89999999975 3469999999987665
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.34 E-value=1.3e-05 Score=60.26 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=34.8
Q ss_pred CCccccccCCCCCcc------------------eE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 5 LFEPETGYATEEDAS------------------LK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 5 ~FeCnICld~A~dpV------------------VT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
..+|.||+|.-.+++ ++ ||+.||..|+... ....+..||+|++.+.+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~--~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG--NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT--CCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc--cCCCCCcCCCCCCccCC
Confidence 468999999876654 32 9999999997321 11246799999998865
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.32 E-value=1.3e-05 Score=67.09 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=43.9
Q ss_pred CCCccccccCCCCCcceE-----eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 4 NLFEPETGYATEEDASLK-----QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT-----ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
..|-|.||++.=+|||++ ||-.||..|+.. ....||+|+..++.+.++|-+
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~------~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH------TCSBCTTTCCBCCGGGCEECH
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHh------CCCCCCCCcCCCChhhCcchH
Confidence 568999999999999997 999999999641 123699999999999999965
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.25 E-value=6.7e-05 Score=54.21 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeeec
Q 027909 5 LFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLYG 61 (217)
Q Consensus 5 ~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLYG 61 (217)
..+|.||+|...++|+. +|+.|+..| ..||+|+..|.. ++.+|-
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----------~~CP~Cr~~i~~--~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----------QSCPVCRSRVEH--VQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----------SBCTTTCCBCCE--EEECBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----------CcCCCCCchhhC--eEEEEe
Confidence 35799999999999987 799999885 399999999886 688884
No 60
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.79 E-value=0.00015 Score=52.47 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=36.1
Q ss_pred CCCCccccccCCC--CCcceE-------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccce
Q 027909 3 QNLFEPETGYATE--EDASLK-------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASL 56 (217)
Q Consensus 3 ~s~FeCnICld~A--~dpVVT-------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~v 56 (217)
+..++|.||+|.. +|+++. ||..|+..+.. +....||+|+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~------~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT------DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT------SSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh------cCCCCCCCCCCccCCCch
Confidence 5678999999977 355552 78888877532 145789999999998765
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.45 E-value=0.00029 Score=51.42 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=34.3
Q ss_pred CCCCccccccCCC--CCcceE----------eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 3 QNLFEPETGYATE--EDASLK----------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 3 ~s~FeCnICld~A--~dpVVT----------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
.+.-+|-||++.. .+++++ |.-.||.+|+.. +....||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-----~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-----SDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-----HCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-----CCCCCCCCCCCeeecC
Confidence 4556899999754 567775 567788899752 2346999999998643
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.32 E-value=0.00061 Score=53.32 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CccccccCCCCCc-----------------ceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 6 FEPETGYATEEDA-----------------SLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 6 FeCnICld~A~dp-----------------VVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
=.|.||++.-.++ |+. |+..||..|+. .+..||+|++....
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-------~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-------TRQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-------cCCcCCCCCCeeee
Confidence 3699999876553 332 89999999975 45799999998653
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.31 E-value=5.5e-05 Score=55.48 Aligned_cols=55 Identities=9% Similarity=0.014 Sum_probs=38.4
Q ss_pred CCCCCccccccCCCCCcceE--------eeCCCCCCCCCCCCCC-CcCCCCCCC--cccc--ccccce
Q 027909 2 EQNLFEPETGYATEEDASLK--------QKWSPTSAPTNVPEKD-DEQQQNCPV--CKAN--ISVASL 56 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVT--------ycW~ci~~w~~~~~~~-~~~~~~CPV--CKa~--Vs~~~v 56 (217)
+.+.|+|.||+|..++++.. ||..|+.++....-++ ......||. |+.. +..+.|
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CCSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 35789999999999888763 8999988764321000 012358999 9999 776554
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.10 E-value=0.00057 Score=52.28 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=32.0
Q ss_pred CCccccccCCCCCc-----------------ceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 5 LFEPETGYATEEDA-----------------SLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 5 ~FeCnICld~A~dp-----------------VVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
.-.|.||++.-.++ ++. |+..||..|+. .+..||+|++...
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-------~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-------TRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-------TCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-------cCCcCcCCCCcce
Confidence 34699999886655 333 99999999975 4579999999864
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0016 Score=57.89 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=42.2
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCC--ccccccccceee
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPV--CKANISVASLVP 58 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPV--CKa~Vs~~~viP 58 (217)
...|-|-||++.=+|||.. ||=.||.+|... .....||| |+..++.+.++|
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~-----~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG-----YTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT-----CSCEECSGGGCSCEECGGGEEE
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh-----CCCCCCCcccccCcCchhhCCc
Confidence 3568899999999999974 998888888531 13468999 999999999988
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=93.64 E-value=0.0028 Score=43.79 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=33.8
Q ss_pred CCC-CCCccccccCCCCCcceEee-------CC---CCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 1 MEQ-NLFEPETGYATEEDASLKQK-------WS---PTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 1 m~~-s~FeCnICld~A~dpVVTyc-------W~---ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
||+ +.-+|-||++.+.++.+.-| |- ||.+|+.. +....||+||....
T Consensus 1 ~e~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~-----~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI-----SRNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH-----HTCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh-----CCCCccCCCCCeee
Confidence 554 45579999999888877632 44 67788642 24589999998753
No 67
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=93.47 E-value=0.0057 Score=56.77 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=34.4
Q ss_pred CCCCCccccccCCCCCcceEeeCC--CCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 2 EQNLFEPETGYATEEDASLKQKWS--PTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVTycW~--ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
.....+|.||+|..++||++-|=- |..=-..|. .+....||+|++.|....+|-+
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl---~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ---ESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHH---HHTCSBCTTTCCBCCEEEECSC
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHH---hcCCCCCCCCCCccCCceeEec
Confidence 445689999999999999980000 000000000 0145799999999999877654
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.34 E-value=0.015 Score=42.05 Aligned_cols=45 Identities=7% Similarity=0.006 Sum_probs=31.8
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccc
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANIS 52 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs 52 (217)
+..-+|.||++....-+.+ |-=.||++|+.. .....||.|++...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~-----~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS-----NAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT-----CSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh-----cCCCCCCCCcCcCC
Confidence 3457899999998755544 445577788752 23489999998764
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=92.38 E-value=0.009 Score=55.33 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=33.9
Q ss_pred CCCCccccccCCCCC----cceE---------eeCCCCCCCCCCCCCC----CcCCCCCCCccccccc
Q 027909 3 QNLFEPETGYATEED----ASLK---------QKWSPTSAPTNVPEKD----DEQQQNCPVCKANISV 53 (217)
Q Consensus 3 ~s~FeCnICld~A~d----pVVT---------ycW~ci~~w~~~~~~~----~~~~~~CPVCKa~Vs~ 53 (217)
+..-||.||++.-.+ |.++ |--.||+.|+....+. +.-.-.||.|++.|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 356799999987655 4332 7789999997531000 0012589999999874
No 70
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=70.39 E-value=3.3 Score=27.86 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhh
Q 027909 204 LFLFCCLVLCLLL 216 (217)
Q Consensus 204 ~Fl~ccvvLCLll 216 (217)
|.=||++++||||
T Consensus 32 fvnfcliliclll 44 (52)
T 1fjk_A 32 FINFCLILIFLLL 44 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555555544
No 71
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=58.97 E-value=2.6 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.0
Q ss_pred CCCCCccccccc
Q 027909 42 QNCPVCKANISV 53 (217)
Q Consensus 42 ~~CPVCKa~Vs~ 53 (217)
-.|||||+..-.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 479999986543
No 72
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=53.63 E-value=4.5 Score=28.58 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.1
Q ss_pred CCCCCCCcccccccc
Q 027909 40 QQQNCPVCKANISVA 54 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~ 54 (217)
+.-.||+||+.+.-+
T Consensus 9 eiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 9 EVLACPKDKGPLRYL 23 (67)
T ss_dssp CCCBCTTTCCBCEEE
T ss_pred HHhCCCCCCCcCeEe
Confidence 667999999987654
No 73
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=52.83 E-value=6.9 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=12.7
Q ss_pred CCCCCCCccccccccc
Q 027909 40 QQQNCPVCKANISVAS 55 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~~ 55 (217)
+.-.||+||+.+..+.
T Consensus 9 ~iL~CP~c~~~L~~~~ 24 (56)
T 2kpi_A 9 EILACPACHAPLEERD 24 (56)
T ss_dssp TSCCCSSSCSCEEEET
T ss_pred hheeCCCCCCcceecC
Confidence 6689999999876544
No 74
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=52.65 E-value=6.8 Score=27.64 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.9
Q ss_pred CCCCCCCcccccccc
Q 027909 40 QQQNCPVCKANISVA 54 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~ 54 (217)
+--.||+||+.+..+
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 7 DILVCPVTKGRLEYH 21 (68)
T ss_dssp CCCBCSSSCCBCEEE
T ss_pred hheECCCCCCcCeEe
Confidence 567999999987643
No 75
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=50.64 E-value=7.1 Score=27.70 Aligned_cols=15 Identities=33% Similarity=0.802 Sum_probs=11.9
Q ss_pred CCCCCCCcccccccc
Q 027909 40 QQQNCPVCKANISVA 54 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~ 54 (217)
+--.||+||+.+.-+
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 7 DILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCBCTTTCCBEEEE
T ss_pred hheECCCCCCcCEEe
Confidence 567999999987644
No 76
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.63 E-value=6.2 Score=27.93 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=11.5
Q ss_pred CCCCCCCccccccc
Q 027909 40 QQQNCPVCKANISV 53 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~ 53 (217)
+.-.||+||+.+.-
T Consensus 7 eiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 7 DILACPICKGPLKL 20 (69)
T ss_dssp GTCCCTTTCCCCEE
T ss_pred hheeCCCCCCcCeE
Confidence 56799999998764
No 77
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=49.18 E-value=4.7 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=11.7
Q ss_pred CCCCCCCcccccccc
Q 027909 40 QQQNCPVCKANISVA 54 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~ 54 (217)
+--.||+||+.+..+
T Consensus 7 ~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 7 EILVCPLCKGPLVFD 21 (68)
T ss_dssp EECBCTTTCCBCEEE
T ss_pred hheECCCCCCcCeEe
Confidence 557999999987643
No 78
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=45.55 E-value=17 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.753 Sum_probs=13.6
Q ss_pred HHhhhhHHHHHHHHHHHHHh
Q 027909 196 DKSLNRVSLFLFCCLVLCLL 215 (217)
Q Consensus 196 d~sL~ri~~Fl~ccvvLCLl 215 (217)
.++=++.|++++||+++.++
T Consensus 80 k~~rkk~~i~l~~~~i~~~i 99 (109)
T 3hd7_B 80 SKARRKKIMIIICCVILGII 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcceehHHHHHHHHHH
Confidence 34556778778887777654
No 79
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.85 E-value=9.5 Score=24.53 Aligned_cols=10 Identities=40% Similarity=1.215 Sum_probs=8.0
Q ss_pred CCCCCCCccc
Q 027909 40 QQQNCPVCKA 49 (217)
Q Consensus 40 ~~~~CPVCKa 49 (217)
....||+||+
T Consensus 4 ~~~~CP~C~~ 13 (50)
T 1pft_A 4 KQKVCPACES 13 (50)
T ss_dssp SCCSCTTTSC
T ss_pred ccEeCcCCCC
Confidence 3468999998
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=41.86 E-value=3.7 Score=42.14 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred CCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeeee
Q 027909 4 NLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPLY 60 (217)
Q Consensus 4 s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPLY 60 (217)
+-|-|-|=+|.=+|||++ |--..|.+|+. .+..||+=+..++.+.|||=+
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~-------~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL-------SDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-------TCCBCTTTCCBCCGGGCEECH
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHh-------cCCCCCCCCCCCCcccccccH
Confidence 468899999999999985 77888888864 256899999999999999965
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=41.38 E-value=22 Score=34.77 Aligned_cols=40 Identities=20% Similarity=0.120 Sum_probs=27.2
Q ss_pred cccceeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 027909 52 SVASLVPLYGRGGISSASDSKKPNLGEVVPSRPHPSALNT 91 (217)
Q Consensus 52 s~~~viPLYGRG~~~~~~~~k~~~~g~~IPpRP~~~R~es 91 (217)
+|-.++-|||+|.....+...-=.....|||||...-.+=
T Consensus 819 ~e~~~~~~~~~~~~~~~~~~~l~~~~~~~p~rp~~~~~~~ 858 (902)
T 2oaj_A 819 FQASLFSTVKEQDTLAPVSDTLYINGIRIPYRPQVNSLQW 858 (902)
T ss_dssp SEEEEEEEESCCCCCCCCCCBCCCTTCCCCCCCCCCTTTS
T ss_pred hheEEEEEEcCCCCCCCCCceeeCCCCCCCCCCCcCcchh
Confidence 4567889999998764433333345578999999874443
No 82
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=40.25 E-value=2.9 Score=32.08 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=25.2
Q ss_pred eeCCCCCCCCCCCCCCCcCCCCCCCccccccccceeee
Q 027909 22 QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVASLVPL 59 (217)
Q Consensus 22 ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~~viPL 59 (217)
||..|+..|.. ...+.||.|++.|..=.-+++
T Consensus 24 FCydCa~~~~~------~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 24 FCYDCAILHEK------KGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp EEHHHHHHHHH------TTCCBCTTTCCBCSEEEEEEG
T ss_pred HHHHHHHHHHh------ccCCCCcCcCCeeeeeEEecc
Confidence 78899887632 355899999999998776766
No 83
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=40.07 E-value=19 Score=21.80 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 027909 206 LFCCLVLCLLL 216 (217)
Q Consensus 206 l~ccvvLCLll 216 (217)
=||++++||+|
T Consensus 13 NfcLilICllL 23 (30)
T 1yod_A 13 NRCLREICQEL 23 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 84
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=39.44 E-value=7.1 Score=23.30 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q 027909 41 QQNCPVCKANIS 52 (217)
Q Consensus 41 ~~~CPVCKa~Vs 52 (217)
+-+||||...+.
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 468999986543
No 85
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.65 E-value=6.9 Score=28.89 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=11.0
Q ss_pred CCCCCCcccccccc
Q 027909 41 QQNCPVCKANISVA 54 (217)
Q Consensus 41 ~~~CPVCKa~Vs~~ 54 (217)
...||||...++.+
T Consensus 47 g~~CPvCgs~l~~~ 60 (112)
T 1l8d_A 47 KGKCPVCGRELTDE 60 (112)
T ss_dssp SEECTTTCCEECHH
T ss_pred CCCCCCCCCcCCHH
Confidence 34799999988864
No 86
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.54 E-value=6.1 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCCCcceEeeCCCCCCCCCCC------CCCCcC----------CCCCCCcccc
Q 027909 14 TEEDASLKQKWSPTSAPTNVP------EKDDEQ----------QQNCPVCKAN 50 (217)
Q Consensus 14 ~A~dpVVTycW~ci~~w~~~~------~~~~~~----------~~~CPVCKa~ 50 (217)
....|++-.|+.|=+.|.... +..... ...||.|.+.
T Consensus 64 i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 64 FVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp EEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred EEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 334566669999999885411 000112 5789999875
No 87
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.30 E-value=17 Score=24.66 Aligned_cols=15 Identities=27% Similarity=0.787 Sum_probs=13.2
Q ss_pred CCCCCCCcccccccc
Q 027909 40 QQQNCPVCKANISVA 54 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~~ 54 (217)
+.+.||-|+..|+++
T Consensus 5 ~~k~CP~C~~~Iek~ 19 (60)
T 1wd2_A 5 NTKECPKCHVTIEKD 19 (60)
T ss_dssp CCCCCTTTCCCCSSC
T ss_pred cceECcCCCCeeEeC
Confidence 568999999999985
No 88
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=34.91 E-value=22 Score=22.55 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHhhhhHHHHHHHHHHHHHhhC
Q 027909 196 DKSLNRVSLFLFCCLVLCLLLF 217 (217)
Q Consensus 196 d~sL~ri~~Fl~ccvvLCLllF 217 (217)
|.-|.++..||+++.++..++|
T Consensus 4 D~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 4 DVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999998877664
No 89
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.92 E-value=13 Score=28.15 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=22.4
Q ss_pred CCCcceEeeCCCCCCCCCCCCCCCcCCC-CCCCccccc
Q 027909 15 EEDASLKQKWSPTSAPTNVPEKDDEQQQ-NCPVCKANI 51 (217)
Q Consensus 15 A~dpVVTycW~ci~~w~~~~~~~~~~~~-~CPVCKa~V 51 (217)
...|+.-.|+.|=+.+.. ..... .||.|.+..
T Consensus 68 ~~~p~~~~C~~CG~~~e~-----~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKP-----NALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECCEEECSSSSCEECS-----CCSTTCCCSSSSSCC
T ss_pred EeccceEEcCCCCCEEeC-----CCCCCCcCccccCCC
Confidence 344555589999888753 23456 899999873
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.74 E-value=72 Score=21.23 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=31.0
Q ss_pred CCCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCcccccccc
Q 027909 2 EQNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 2 ~~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
|.+.-.|.||.+. .+-+++ |-+.|+..-+.. .....-.||.|+....+.
T Consensus 6 d~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~---~p~g~W~C~~C~~~~~k~ 60 (61)
T 1mm2_A 6 DHHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPE---IPNGEWLCPRCTCPALKG 60 (61)
T ss_dssp CSSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSS---CCSSCCCCTTTTTTCCTT
T ss_pred cCCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCc---CCCCccCChhhcCchhcC
Confidence 4556679999874 344444 778888753321 223456799998765543
No 91
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.80 E-value=17 Score=19.94 Aligned_cols=11 Identities=9% Similarity=-0.109 Sum_probs=6.0
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 9 ~k~~~C~~C~k 19 (37)
T 1p7a_A 9 IKPFQCPDCDR 19 (37)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCCCc
Confidence 44566666643
No 92
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=31.11 E-value=17 Score=27.72 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.7
Q ss_pred CChhhhhhhhHHHHhh
Q 027909 184 NNPRIRRQEMELDKSL 199 (217)
Q Consensus 184 ~spR~Rrq~mq~d~sL 199 (217)
.||.||||.|.+..|+
T Consensus 94 ASPqMRRQLmRLRNs~ 109 (113)
T 3e56_A 94 ASPQMRRQLMRLRNAV 109 (113)
T ss_dssp SCHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHhccc
Confidence 8999999999887665
No 93
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.28 E-value=17 Score=32.38 Aligned_cols=38 Identities=5% Similarity=-0.047 Sum_probs=30.7
Q ss_pred CccccccCCCCCcceE-----------eeCCCCCCCCCCCCCCCcCCCCCCCcccc
Q 027909 6 FEPETGYATEEDASLK-----------QKWSPTSAPTNVPEKDDEQQQNCPVCKAN 50 (217)
Q Consensus 6 FeCnICld~A~dpVVT-----------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~ 50 (217)
=-|-+|.....-.||. +|-.|=+.|-. .+-.||.|...
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-------VRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-------CTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-------cCcCCcCCCCC
Confidence 3599998877666663 69999999954 67899999887
No 94
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=29.58 E-value=25 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=18.0
Q ss_pred HHhhhhHHHHHHHHHHHHHhhC
Q 027909 196 DKSLNRVSLFLFCCLVLCLLLF 217 (217)
Q Consensus 196 d~sL~ri~~Fl~ccvvLCLllF 217 (217)
|.-|.++..||+++.++..++|
T Consensus 4 D~qL~~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 4 DEQLNSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999988877663
No 95
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.59 E-value=17 Score=19.50 Aligned_cols=10 Identities=0% Similarity=-0.214 Sum_probs=5.4
Q ss_pred CCCCcccccc
Q 027909 3 QNLFEPETGY 12 (217)
Q Consensus 3 ~s~FeCnICl 12 (217)
+..|+|++|.
T Consensus 5 ~k~~~C~~C~ 14 (35)
T 2elx_A 5 SSGYVCALCL 14 (35)
T ss_dssp CCSEECSSSC
T ss_pred CCCeECCCCc
Confidence 3455666654
No 96
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.49 E-value=23 Score=23.93 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=10.4
Q ss_pred CCCCCccccccccceee
Q 027909 42 QNCPVCKANISVASLVP 58 (217)
Q Consensus 42 ~~CPVCKa~Vs~~~viP 58 (217)
-.||||.+. ++...+
T Consensus 37 w~CP~Cg~~--K~~F~~ 51 (54)
T 4rxn_A 37 WVCPLCGVG--KDEFEE 51 (54)
T ss_dssp CBCTTTCCB--GGGEEE
T ss_pred CcCcCCCCc--HHHceE
Confidence 479999986 444444
No 97
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=28.30 E-value=27 Score=29.67 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=27.4
Q ss_pred CCCCccccccCCCCCcceEeeCCCCCCCCC-----CCCCCCcCCCCCCCcccccccc
Q 027909 3 QNLFEPETGYATEEDASLKQKWSPTSAPTN-----VPEKDDEQQQNCPVCKANISVA 54 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVTycW~ci~~w~~-----~~~~~~~~~~~CPVCKa~Vs~~ 54 (217)
+..-+|.||.+.+.--+.+- .|-+.|-. |. .......||.|+.....+
T Consensus 178 ~~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~--~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYF--QSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHT--TTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHH--HhCCCCCCCCCCCCCCCC
Confidence 35678999999998766551 11111000 00 012457999999876543
No 98
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.22 E-value=21 Score=19.32 Aligned_cols=11 Identities=0% Similarity=-0.354 Sum_probs=6.8
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~~~~~C~~C~k 17 (36)
T 2elr_A 7 GKTHLCDMCGK 17 (36)
T ss_dssp CSSCBCTTTCC
T ss_pred CCCeecCcCCC
Confidence 45667777654
No 99
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=28.16 E-value=27 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 027909 204 LFLFCCLVLCLL 215 (217)
Q Consensus 204 ~Fl~ccvvLCLl 215 (217)
+.|.|.+++|||
T Consensus 14 ~vLI~vlLi~ll 25 (31)
T 1jdm_A 14 IVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444544
No 100
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.06 E-value=15 Score=18.68 Aligned_cols=8 Identities=0% Similarity=-0.243 Sum_probs=3.9
Q ss_pred CCcccccc
Q 027909 5 LFEPETGY 12 (217)
Q Consensus 5 ~FeCnICl 12 (217)
.|+|++|.
T Consensus 3 ~~~C~~C~ 10 (28)
T 2kvf_A 3 PYSCSVCG 10 (28)
T ss_dssp SEECSSSC
T ss_pred CccCCCCC
Confidence 45555553
No 101
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=27.61 E-value=29 Score=26.15 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.4
Q ss_pred CCCCCCCccccccc
Q 027909 40 QQQNCPVCKANISV 53 (217)
Q Consensus 40 ~~~~CPVCKa~Vs~ 53 (217)
+--.||+||+.+..
T Consensus 7 dILaCP~cK~pL~l 20 (97)
T 2k5r_A 7 HLLCSPDTRQPLSL 20 (97)
T ss_dssp SSCCCCTTSSCCEE
T ss_pred hheECCCCCCcccc
Confidence 56799999997664
No 102
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.20 E-value=17 Score=19.70 Aligned_cols=11 Identities=0% Similarity=-0.176 Sum_probs=6.4
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45566666643
No 103
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.33 E-value=18 Score=19.74 Aligned_cols=11 Identities=9% Similarity=-0.161 Sum_probs=6.4
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45566666643
No 104
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.30 E-value=18 Score=18.34 Aligned_cols=9 Identities=11% Similarity=-0.131 Sum_probs=4.7
Q ss_pred CCCcccccc
Q 027909 4 NLFEPETGY 12 (217)
Q Consensus 4 s~FeCnICl 12 (217)
..|+|++|.
T Consensus 2 k~~~C~~C~ 10 (27)
T 2kvh_A 2 KPFSCSLCP 10 (27)
T ss_dssp CCEECSSSS
T ss_pred cCccCCCcC
Confidence 345555554
No 105
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.22 E-value=21 Score=19.51 Aligned_cols=11 Identities=0% Similarity=-0.185 Sum_probs=6.7
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCcCCCCCCC
Confidence 45667776654
No 106
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.01 E-value=19 Score=19.42 Aligned_cols=11 Identities=9% Similarity=0.014 Sum_probs=6.2
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 5 ~k~~~C~~C~k 15 (35)
T 1srk_A 5 KRPFVCRICLS 15 (35)
T ss_dssp CSCEECSSSCC
T ss_pred CcCeeCCCCCc
Confidence 45566666643
No 107
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=24.21 E-value=22 Score=21.93 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=7.6
Q ss_pred CCCCCCCCC
Q 027909 79 VVPSRPHPS 87 (217)
Q Consensus 79 ~IPpRP~~~ 87 (217)
.|||||+++
T Consensus 6 ~vPpRPs~~ 14 (32)
T 1k4u_P 6 AVPPRPSAD 14 (32)
T ss_dssp CCCCCCCHH
T ss_pred CCCCCCCHH
Confidence 599999875
No 108
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.63 E-value=18 Score=18.55 Aligned_cols=8 Identities=0% Similarity=-0.226 Sum_probs=4.1
Q ss_pred CCcccccc
Q 027909 5 LFEPETGY 12 (217)
Q Consensus 5 ~FeCnICl 12 (217)
.|+|++|.
T Consensus 3 ~~~C~~C~ 10 (27)
T 2kvg_A 3 PYRCPLCR 10 (27)
T ss_dssp TEEETTTT
T ss_pred CcCCCCCC
Confidence 45555553
No 109
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.25 E-value=22 Score=19.35 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=5.8
Q ss_pred CCCCcccccc
Q 027909 3 QNLFEPETGY 12 (217)
Q Consensus 3 ~s~FeCnICl 12 (217)
+..|+|++|.
T Consensus 7 ~k~~~C~~C~ 16 (36)
T 2elv_A 7 GLLYDCHICE 16 (36)
T ss_dssp CCCEECSSSC
T ss_pred CCCeECCCCC
Confidence 4456666664
No 110
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.23 E-value=34 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=10.8
Q ss_pred CCCCccccccccceeee
Q 027909 43 NCPVCKANISVASLVPL 59 (217)
Q Consensus 43 ~CPVCKa~Vs~~~viPL 59 (217)
.||||++. ++..++|
T Consensus 62 ~CPvCga~--K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAA--KSDFEMV 76 (81)
T ss_dssp CCTTTCCC--GGGEEEE
T ss_pred cCCCCCCC--HHHcEEc
Confidence 69999985 5555554
No 111
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.23 E-value=29 Score=19.50 Aligned_cols=13 Identities=8% Similarity=0.000 Sum_probs=7.9
Q ss_pred CCCCCccccccCC
Q 027909 2 EQNLFEPETGYAT 14 (217)
Q Consensus 2 ~~s~FeCnICld~ 14 (217)
++..|+|++|...
T Consensus 7 ~~k~~~C~~C~k~ 19 (42)
T 2yte_A 7 GEKPYSCAECKET 19 (42)
T ss_dssp SCCSCBCTTTCCB
T ss_pred CCCCeECCCCCCc
Confidence 3456777777543
No 112
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.21 E-value=36 Score=22.61 Aligned_cols=8 Identities=50% Similarity=1.273 Sum_probs=7.0
Q ss_pred CCCCcccc
Q 027909 43 NCPVCKAN 50 (217)
Q Consensus 43 ~CPVCKa~ 50 (217)
.||||++.
T Consensus 37 ~CP~Cg~~ 44 (52)
T 1yk4_A 37 VCPLCGAP 44 (52)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 69999985
No 113
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.56 E-value=23 Score=19.27 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=6.3
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 45566666643
No 114
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.53 E-value=29 Score=19.66 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=7.5
Q ss_pred CCCCccccccCC
Q 027909 3 QNLFEPETGYAT 14 (217)
Q Consensus 3 ~s~FeCnICld~ 14 (217)
+..|+|++|...
T Consensus 9 ~k~~~C~~C~k~ 20 (42)
T 2eos_A 9 EKPYPCEICGTR 20 (42)
T ss_dssp SCCBCCSSSCCC
T ss_pred CCCEECCCCCCc
Confidence 456777777543
No 115
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.51 E-value=34 Score=24.13 Aligned_cols=15 Identities=20% Similarity=0.736 Sum_probs=11.8
Q ss_pred CCCCccccccccceeee
Q 027909 43 NCPVCKANISVASLVPL 59 (217)
Q Consensus 43 ~CPVCKa~Vs~~~viPL 59 (217)
.||||++. ++..++|
T Consensus 42 ~CP~Cga~--K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSP--KNQFKSI 56 (70)
T ss_dssp BCTTTCCB--GGGEEEC
T ss_pred cCCCCCCC--HHHceEc
Confidence 69999995 6667776
No 116
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=19 Score=20.14 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=7.0
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 45677777754
No 117
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.37 E-value=24 Score=19.36 Aligned_cols=11 Identities=0% Similarity=-0.351 Sum_probs=6.2
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 44566666643
No 118
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.26 E-value=24 Score=20.39 Aligned_cols=11 Identities=9% Similarity=0.009 Sum_probs=6.5
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2epv_A 10 EKPYECNECGK 20 (44)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45566666643
No 119
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.83 E-value=25 Score=19.64 Aligned_cols=10 Identities=0% Similarity=-0.203 Sum_probs=5.0
Q ss_pred CCCCcccccc
Q 027909 3 QNLFEPETGY 12 (217)
Q Consensus 3 ~s~FeCnICl 12 (217)
+..|+|++|.
T Consensus 4 ~k~~~C~~C~ 13 (39)
T 1njq_A 4 PRSYTCSFCK 13 (39)
T ss_dssp SSSEECTTTC
T ss_pred CCceECCCCC
Confidence 3445555554
No 120
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.65 E-value=34 Score=19.18 Aligned_cols=11 Identities=0% Similarity=-0.031 Sum_probs=6.5
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2ytb_A 9 EKPYRCDQCGK 19 (42)
T ss_dssp CCSBCCTTTTC
T ss_pred CCCeeCCCccc
Confidence 45566666654
No 121
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.42 E-value=30 Score=17.38 Aligned_cols=9 Identities=22% Similarity=-0.034 Sum_probs=4.4
Q ss_pred CCccccccC
Q 027909 5 LFEPETGYA 13 (217)
Q Consensus 5 ~FeCnICld 13 (217)
.|+|++|..
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 355555543
No 122
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.19 E-value=1.5e+02 Score=23.49 Aligned_cols=47 Identities=9% Similarity=-0.139 Sum_probs=30.2
Q ss_pred CCCCccccccCCCCCcceE------eeCCCCCCCCCCCCCCCcCCCCCCCccccccc
Q 027909 3 QNLFEPETGYATEEDASLK------QKWSPTSAPTNVPEKDDEQQQNCPVCKANISV 53 (217)
Q Consensus 3 ~s~FeCnICld~A~dpVVT------ycW~ci~~w~~~~~~~~~~~~~CPVCKa~Vs~ 53 (217)
.+.-.|.+|.+.. +-+.+ |-+.|+...+.. .....-.||.|+..-..
T Consensus 2 ~~~~~C~~C~~~g-~ll~Cd~C~~~~H~~C~~p~l~~---~p~~~W~C~~C~~~~~~ 54 (184)
T 3o36_A 2 PNEDWCAVCQNGG-ELLCCEKCPKVFHLSCHVPTLTN---FPSGEWICTFCRDLSKP 54 (184)
T ss_dssp CSCSSCTTTCCCS-SCEECSSSSCEECTTTSSSCCSS---CCSSCCCCTTTSCSSSC
T ss_pred CCCCccccCCCCC-eeeecCCCCcccCccccCCCCCC---CCCCCEECccccCcccc
Confidence 4556699999764 44444 778887664431 22345789999976543
No 123
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.80 E-value=37 Score=23.58 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=9.1
Q ss_pred CCCCCcccc-cccc
Q 027909 42 QNCPVCKAN-ISVA 54 (217)
Q Consensus 42 ~~CPVCKa~-Vs~~ 54 (217)
-.||+|+++ +.++
T Consensus 3 m~Cp~Cg~~~l~~~ 16 (78)
T 3ga8_A 3 MKCPVCHQGEMVSG 16 (78)
T ss_dssp CBCTTTSSSBEEEE
T ss_pred eECCCCCCCeeEeE
Confidence 479999976 4443
No 124
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.11 E-value=21 Score=18.19 Aligned_cols=9 Identities=0% Similarity=-0.348 Sum_probs=4.8
Q ss_pred CCccccccC
Q 027909 5 LFEPETGYA 13 (217)
Q Consensus 5 ~FeCnICld 13 (217)
.|+|++|..
T Consensus 3 ~~~C~~C~k 11 (30)
T 2lvr_A 3 PYVCIHCQR 11 (30)
Confidence 455555543
No 125
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.66 E-value=59 Score=20.59 Aligned_cols=17 Identities=53% Similarity=0.684 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q 027909 198 SLNRVSLFLFCCLVLCL 214 (217)
Q Consensus 198 sL~ri~~Fl~ccvvLCL 214 (217)
-|||-+++++.+.|+.|
T Consensus 11 ELNRTSLy~GLLlifvl 27 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVL 27 (37)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHH
Confidence 48888888776665554
No 126
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.65 E-value=30 Score=19.71 Aligned_cols=11 Identities=18% Similarity=-0.019 Sum_probs=7.1
Q ss_pred CCCCccccccC
Q 027909 3 QNLFEPETGYA 13 (217)
Q Consensus 3 ~s~FeCnICld 13 (217)
+..|+|++|..
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eoj_A 10 ENPYECCECGK 20 (44)
T ss_dssp CCSCEETTTTE
T ss_pred CcCeeCCCCCC
Confidence 45677777754
No 127
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.59 E-value=29 Score=22.68 Aligned_cols=9 Identities=44% Similarity=1.088 Sum_probs=7.5
Q ss_pred CCCCCcccc
Q 027909 42 QNCPVCKAN 50 (217)
Q Consensus 42 ~~CPVCKa~ 50 (217)
-.||||.+.
T Consensus 31 w~CP~Cg~~ 39 (46)
T 6rxn_A 31 WCCPVCGVS 39 (46)
T ss_dssp CBCTTTCCB
T ss_pred CcCcCCCCc
Confidence 479999985
No 128
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.54 E-value=31 Score=22.97 Aligned_cols=8 Identities=63% Similarity=1.493 Sum_probs=7.0
Q ss_pred CCCCcccc
Q 027909 43 NCPVCKAN 50 (217)
Q Consensus 43 ~CPVCKa~ 50 (217)
.||||++.
T Consensus 38 ~CP~Cg~~ 45 (52)
T 1e8j_A 38 ACPVCGAS 45 (52)
T ss_dssp CCSSSCCC
T ss_pred cCCCCCCc
Confidence 69999985
No 129
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.48 E-value=36 Score=19.28 Aligned_cols=12 Identities=0% Similarity=-0.202 Sum_probs=7.2
Q ss_pred CCCCccccccCC
Q 027909 3 QNLFEPETGYAT 14 (217)
Q Consensus 3 ~s~FeCnICld~ 14 (217)
+..|+|++|...
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2en7_A 10 MKPYVCNECGKA 21 (44)
T ss_dssp SSSSCCTTTCCC
T ss_pred CcCeECCCCCCc
Confidence 456677776543
No 130
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.34 E-value=30 Score=23.26 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=7.1
Q ss_pred CCCCcccc
Q 027909 43 NCPVCKAN 50 (217)
Q Consensus 43 ~CPVCKa~ 50 (217)
.||||++.
T Consensus 38 ~CP~Cga~ 45 (55)
T 2v3b_B 38 VCPDCGVG 45 (55)
T ss_dssp CCTTTCCC
T ss_pred cCCCCCCC
Confidence 69999986
No 131
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=38 Score=19.50 Aligned_cols=14 Identities=0% Similarity=-0.147 Sum_probs=9.1
Q ss_pred CCCCCccccccCCC
Q 027909 2 EQNLFEPETGYATE 15 (217)
Q Consensus 2 ~~s~FeCnICld~A 15 (217)
++..|.|++|...-
T Consensus 9 ~~k~~~C~~C~k~f 22 (46)
T 2eq1_A 9 GEKPYKCNECGKAF 22 (46)
T ss_dssp CSCCCCCTTTTCCC
T ss_pred CCCCeECCcCChhh
Confidence 35677888876543
No 132
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=20.20 E-value=52 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=14.1
Q ss_pred HHHhhhhHHHHHHHHHH-HHHh
Q 027909 195 LDKSLNRVSLFLFCCLV-LCLL 215 (217)
Q Consensus 195 ~d~sL~ri~~Fl~ccvv-LCLl 215 (217)
.|+.|+|+-.+|.++|+ ++|+
T Consensus 47 ~~~~L~K~T~ilailF~v~sl~ 68 (107)
T 3dl8_E 47 VETILTKATYWLGALFLVLALL 68 (107)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 58899999777665554 4443
No 133
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=38 Score=19.59 Aligned_cols=12 Identities=8% Similarity=-0.050 Sum_probs=7.7
Q ss_pred CCCCccccccCC
Q 027909 3 QNLFEPETGYAT 14 (217)
Q Consensus 3 ~s~FeCnICld~ 14 (217)
+..|+|++|...
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2emz_A 10 ERPFKCNECGKG 21 (46)
T ss_dssp CCSCCCSSSCCC
T ss_pred CCCeECCCCCcc
Confidence 456777777543
No 134
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=38 Score=19.61 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=7.9
Q ss_pred CCCCCccccccCC
Q 027909 2 EQNLFEPETGYAT 14 (217)
Q Consensus 2 ~~s~FeCnICld~ 14 (217)
++..|+|++|...
T Consensus 9 ~~k~~~C~~C~k~ 21 (46)
T 2en9_A 9 GKKLFKCNECKKT 21 (46)
T ss_dssp SSCCCBCTTTCCB
T ss_pred CCCCEECCccCcc
Confidence 3456777777543
Done!