BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027910
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869
           From Streptomyces Coelicolor
          Length = 239

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 21/215 (9%)

Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKK-DFYEN 73
           R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V         
Sbjct: 4   RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLTA 63

Query: 74  KFG-SQNQGIIARMTEVFRGLGLEYNMSGLT--------GNTLDSHRLLYLAGQQGLDKQ 124
           K+G SQ Q            LG +    GL         G+T D HRLL+LA ++G  + 
Sbjct: 64  KYGXSQEQAQAGEDN-----LGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERG--RH 116

Query: 125 HNLAEELFLGYFTQGKYI-GDKEFLVECARKVGV--EGAAEFLDDPNSGLNEVH-EELKK 180
             L +  + G F   + +  D E LVE A   G+  E     L DP +  +EV  +E + 
Sbjct: 117 EALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREA 176

Query: 181 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215
                +GVP FVL+  + +SG QP EV+ +A   A
Sbjct: 177 AQLGATGVPFFVLDRAYGVSGAQPAEVFTQALTQA 211


>pdb|3C7M|A Chain A, Crystal Structure Of Reduced Dsbl
 pdb|3C7M|B Chain B, Crystal Structure Of Reduced Dsbl
          Length = 195

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 154 KVGVEGAAEFLDDPNSGLNE--VHEELKKYSAN-----ISGVPHFVLNGKH 197
           K G++ A     D  + L E  V E L+K+ A+     I GVP +V+NGK+
Sbjct: 122 KTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVAKIQGVPAYVVNGKY 172


>pdb|3L9U|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
           Typhimurium Dsbl
          Length = 201

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 154 KVGVEGAAEFLDDPNSGLNE--VHEELKKYSA-----NISGVPHFVLNGKH 197
           K G++ A     D  + L +  V E L+K+ A      I GVP +V+NGK+
Sbjct: 127 KTGLDAAGMSQADFEAALKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKY 177


>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 1
 pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 2
 pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
           Substrate-Binding Protein From Streptococcus Pneumoniae
           Canada Mdr_19a Bound To L- Arginine, Form 2
          Length = 243

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ----YDFEIRWHPFFL 56
           MAQ+++   G KL  + +S D V      GK +L  A  S+ D+    +DF I   P++ 
Sbjct: 44  MAQAIADELGVKLEILSMSFDNVLTSLQTGKADLAVAGISATDERKEVFDFSI---PYYE 100

Query: 57  N 57
           N
Sbjct: 101 N 101


>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
           Forming) From Saccharomyces Cerevisiae
          Length = 467

 Score = 27.3 bits (59), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 14/67 (20%)

Query: 2   AQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAP 61
           AQ+++  +G K I +DV+ D+           LDK +A +    D  I   P+  +P+  
Sbjct: 60  AQALAKPSGSKAISLDVTDDSA----------LDKVLADN----DVVISLIPYTFHPNVV 105

Query: 62  KEGVNKK 68
           K  +  K
Sbjct: 106 KSAIRTK 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,832,089
Number of Sequences: 62578
Number of extensions: 300685
Number of successful extensions: 700
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)