BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027910
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39598|YWBO_BACSU Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168)
           GN=ywbO PE=4 SV=1
          Length = 200

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           + I V SD VCP+CFVGK   ++AI       D E+ W PF L PS P   ++  +    
Sbjct: 3   VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRPS-PSPQLDPVNDPSK 57

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
           ++  Q    I  M E    LG+E N   ++ +             +  +K H     +F 
Sbjct: 58  QYMWQTS--IQPMAE---KLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQ 112

Query: 134 GYFTQGKYIGDKEFLVECARKVGVEGAA--------EFLDDPNSGLNEVHEELKKYSANI 185
            +F + + IGD + L + A +VG++GA+         + D     L   +EE     A+I
Sbjct: 113 AFFQEDQNIGDIDILTKLAEEVGLDGASFKSALETRTYQDVQRQALKHAYEE-----ADI 167

Query: 186 SGVPHFVLNGKHELSGGQPPEVYLRA 211
           + VP F++ G   + G    +V+ +A
Sbjct: 168 TAVPTFII-GDTVIPGAAGKDVFEKA 192


>sp|Q9P2E5|CHPF2_HUMAN Chondroitin sulfate glucuronyltransferase OS=Homo sapiens GN=CHPF2
           PE=2 SV=2
          Length = 772

 Score = 37.0 bits (84), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 30  GKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE- 88
           G +N D      +   DF+ R  P++ +P+ P + V +  + + + GS+ + ++A +T  
Sbjct: 51  GPQNPDSRARLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSR 110

Query: 89  -VFRGLGLEYNMSGLTGNTLDSH--RLLYLAGQQG 120
                L +  N       T+  H  RLLY  GQ+G
Sbjct: 111 ATLSTLAVAVN------RTVAHHFPRLLYFTGQRG 139


>sp|Q92JI7|DEF2_RICCN Peptide deformylase 2 OS=Rickettsia conorii (strain ATCC VR-613 /
           Malish 7) GN=def2 PE=3 SV=2
          Length = 202

 Score = 33.1 bits (74), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 21/111 (18%)

Query: 50  RWHP---------FFLNPSAPKEGVNKKDFYENKFGSQN-QGIIARMTEVFRGLGLEYNM 99
           +WHP          ++NPS    G++K + YE  F  +N  G +AR  ++       Y+ 
Sbjct: 87  KWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKI------HYHA 140

Query: 100 SGLTGNTLDSHRLLYLAG--QQGLDKQHNLAEELFLGYFTQGKYIGDKEFL 148
             + GN +      +LA   Q  +D   +L  ++FL Y    K +  +E+L
Sbjct: 141 YDINGNQIQGIAEGFLARVIQHEID---HLNGKVFLDYVAPKKIMTKEEYL 188


>sp|A6UKC3|KATG_SINMW Catalase-peroxidase OS=Sinorhizobium medicae (strain WSM419)
           GN=katG PE=3 SV=1
          Length = 729

 Score = 32.0 bits (71), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 83  IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK 140
           +AR+  V  G+  ++N S   G  +    L+ LAG  G++K    A +  +  FT G+
Sbjct: 502 LARVLSVLEGIQRDFNASQAGGKKISLADLIVLAGNAGVEKAARAAGQEIIVPFTPGR 559


>sp|B2TK70|OBG_CLOBB GTPase obg OS=Clostridium botulinum (strain Eklund 17B / Type B)
           GN=obg PE=3 SV=1
          Length = 428

 Score = 30.4 bits (67), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 140 KYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHEL 199
           K+I     LV      G+EG   F D       +++EELKKYS  +   P  V+  K +L
Sbjct: 232 KHIERTRLLVHIVDISGIEGREPFED-----FVKINEELKKYSVKLWDRPQIVVANKSDL 286


>sp|Q9Y5G1|PCDGF_HUMAN Protocadherin gamma-B3 OS=Homo sapiens GN=PCDHGB3 PE=2 SV=3
          Length = 929

 Score = 30.4 bits (67), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 155 VGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 211
            G   A E   DP+ G+N     L++Y   +S  PHF L  K  L G + PE+ L+A
Sbjct: 148 TGATFALESAQDPDVGVNS----LQQYY--LSPDPHFSLIQKENLDGSRYPELVLKA 198


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,176,143
Number of Sequences: 539616
Number of extensions: 3768252
Number of successful extensions: 8567
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8561
Number of HSP's gapped (non-prelim): 13
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)