Query 027910
Match_columns 217
No_of_seqs 137 out of 1454
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2761 FrnE Predicted dithiol 100.0 7.8E-47 1.7E-51 294.5 21.5 206 10-216 2-213 (225)
2 cd03024 DsbA_FrnE DsbA family, 100.0 2.1E-40 4.5E-45 260.9 21.8 196 16-213 1-201 (201)
3 PF01323 DSBA: DSBA-like thior 100.0 5.8E-38 1.3E-42 245.2 13.6 189 15-213 1-193 (193)
4 cd03022 DsbA_HCCA_Iso DsbA fam 100.0 9.1E-37 2E-41 238.4 13.7 188 16-212 1-191 (192)
5 cd03021 DsbA_GSTK DsbA family, 100.0 1.6E-35 3.4E-40 234.7 15.2 190 15-212 2-208 (209)
6 COG3917 NahD 2-hydroxychromene 100.0 6E-33 1.3E-37 205.9 15.2 196 8-213 2-201 (203)
7 cd03025 DsbA_FrnE_like DsbA fa 100.0 2.9E-30 6.3E-35 201.8 16.9 169 14-195 1-177 (193)
8 COG3531 Predicted protein-disu 99.9 3.4E-26 7.3E-31 172.8 17.1 188 14-215 2-208 (212)
9 cd03019 DsbA_DsbA DsbA family, 99.9 9.1E-26 2E-30 174.0 16.6 143 11-202 14-158 (178)
10 PF13743 Thioredoxin_5: Thiore 99.9 9.9E-27 2.1E-31 179.2 10.9 166 17-210 1-176 (176)
11 cd03023 DsbA_Com1_like DsbA fa 99.9 2.2E-25 4.7E-30 167.6 16.4 152 8-213 1-154 (154)
12 PRK10954 periplasmic protein d 99.9 2.8E-22 6E-27 158.6 16.3 155 11-215 36-203 (207)
13 PF13462 Thioredoxin_4: Thiore 99.9 1.4E-21 3E-26 148.3 12.4 158 3-214 3-162 (162)
14 COG1651 DsbG Protein-disulfide 99.7 1.2E-15 2.5E-20 123.6 13.4 166 4-216 76-243 (244)
15 cd02972 DsbA_family DsbA famil 99.6 7.3E-15 1.6E-19 101.3 11.3 92 16-196 1-92 (98)
16 PRK11657 dsbG disulfide isomer 99.6 8.5E-15 1.8E-19 118.9 12.8 135 6-213 111-249 (251)
17 PRK10877 protein disulfide iso 99.5 1.9E-13 4.1E-18 109.8 14.6 128 8-216 103-231 (232)
18 cd03020 DsbA_DsbC_DsbG DsbA fa 99.4 2.9E-12 6.4E-17 100.5 12.0 126 6-212 71-197 (197)
19 PF13098 Thioredoxin_2: Thiore 98.3 4E-06 8.6E-11 59.3 8.3 35 178-212 73-112 (112)
20 TIGR00411 redox_disulf_1 small 98.2 2.5E-05 5.3E-10 51.9 8.9 36 180-215 46-81 (82)
21 TIGR00412 redox_disulf_2 small 97.5 0.00029 6.2E-09 46.5 5.4 57 146-212 18-75 (76)
22 PF13192 Thioredoxin_3: Thiore 97.2 0.00053 1.2E-08 45.1 3.8 39 175-213 37-76 (76)
23 TIGR02187 GlrX_arch Glutaredox 97.2 0.011 2.4E-07 46.9 12.0 40 176-215 175-215 (215)
24 TIGR01295 PedC_BrcD bacterioci 97.1 0.014 3.1E-07 42.1 11.0 29 12-40 23-51 (122)
25 PRK11509 hydrogenase-1 operon 96.8 0.0037 8E-08 45.7 5.6 64 145-216 55-124 (132)
26 cd02969 PRX_like1 Peroxiredoxi 96.7 0.058 1.3E-06 41.0 12.0 32 11-42 24-55 (171)
27 PRK15412 thiol:disulfide inter 96.5 0.11 2.5E-06 40.0 12.4 37 180-216 135-176 (185)
28 PRK03147 thiol-disulfide oxido 96.5 0.052 1.1E-06 41.0 10.3 35 9-43 58-92 (173)
29 TIGR03143 AhpF_homolog putativ 96.5 0.078 1.7E-06 48.2 13.0 36 177-212 519-554 (555)
30 cd03026 AhpF_NTD_C TRX-GRX-lik 96.4 0.0054 1.2E-07 41.7 4.2 32 178-209 56-87 (89)
31 PRK15317 alkyl hydroperoxide r 96.4 0.071 1.5E-06 48.0 12.4 39 176-214 158-196 (517)
32 cd03065 PDI_b_Calsequestrin_N 96.1 0.0096 2.1E-07 42.9 4.1 41 176-216 76-119 (120)
33 cd03026 AhpF_NTD_C TRX-GRX-lik 96.0 0.018 3.8E-07 39.1 5.1 40 10-52 10-49 (89)
34 TIGR03140 AhpF alkyl hydropero 96.0 0.23 5E-06 44.7 13.6 39 177-215 160-198 (515)
35 COG2143 Thioredoxin-related pr 95.8 0.019 4.1E-07 42.9 4.7 43 173-215 101-148 (182)
36 TIGR02540 gpx7 putative glutat 95.7 0.35 7.5E-06 36.0 11.4 45 5-50 15-59 (153)
37 TIGR02196 GlrX_YruB Glutaredox 95.6 0.047 1E-06 34.6 5.5 31 180-212 43-73 (74)
38 cd03011 TlpA_like_ScsD_MtbDsbE 95.5 0.27 5.8E-06 34.8 9.8 31 9-39 17-47 (123)
39 TIGR00385 dsbE periplasmic pro 95.4 0.69 1.5E-05 35.2 12.4 37 180-216 130-171 (173)
40 PF13905 Thioredoxin_8: Thiore 95.4 0.06 1.3E-06 36.4 5.8 43 12-54 1-43 (95)
41 cd02973 TRX_GRX_like Thioredox 95.1 0.019 4E-07 36.4 2.4 23 179-201 44-66 (67)
42 TIGR00412 redox_disulf_2 small 95.0 0.034 7.4E-07 36.4 3.6 28 14-42 1-28 (76)
43 KOG0910 Thioredoxin-like prote 94.9 0.031 6.8E-07 41.5 3.4 44 173-216 101-148 (150)
44 KOG3160 Gamma-interferon induc 94.9 0.53 1.2E-05 37.5 10.5 48 7-55 34-82 (220)
45 cd03008 TryX_like_RdCVF Trypar 94.8 1.2 2.5E-05 33.2 12.0 38 6-43 19-56 (146)
46 PTZ00056 glutathione peroxidas 94.8 1.5 3.3E-05 34.3 13.1 39 11-50 38-76 (199)
47 PRK14018 trifunctional thiored 94.7 1.2 2.5E-05 40.3 13.4 40 11-51 55-94 (521)
48 PRK10996 thioredoxin 2; Provis 94.7 0.079 1.7E-06 39.0 5.2 38 178-215 97-138 (139)
49 cd02951 SoxW SoxW family; SoxW 94.7 0.083 1.8E-06 37.8 5.2 41 177-217 74-120 (125)
50 PF00462 Glutaredoxin: Glutare 94.7 0.067 1.4E-06 33.1 4.1 46 146-197 13-59 (60)
51 cd02973 TRX_GRX_like Thioredox 94.4 0.13 2.7E-06 32.4 5.0 27 14-40 1-27 (67)
52 PLN02412 probable glutathione 94.4 1.6 3.6E-05 33.0 11.9 39 11-50 28-66 (167)
53 PF07511 DUF1525: Protein of u 94.4 0.23 5E-06 35.3 6.6 38 177-214 73-110 (114)
54 PTZ00062 glutaredoxin; Provisi 94.3 2.1 4.5E-05 33.8 13.0 31 13-43 18-48 (204)
55 PRK11200 grxA glutaredoxin 1; 94.1 0.084 1.8E-06 35.2 3.8 38 14-54 1-38 (85)
56 cd02963 TRX_DnaJ TRX domain, D 94.1 0.081 1.7E-06 37.3 3.9 37 178-214 70-110 (111)
57 cd02975 PfPDO_like_N Pyrococcu 94.0 0.086 1.9E-06 37.3 4.0 40 178-217 66-111 (113)
58 PRK11200 grxA glutaredoxin 1; 93.9 0.24 5.2E-06 32.9 5.8 30 177-207 48-77 (85)
59 TIGR02194 GlrX_NrdH Glutaredox 93.8 0.33 7.1E-06 31.2 6.2 58 146-210 13-70 (72)
60 cd03028 GRX_PICOT_like Glutare 93.8 0.14 2.9E-06 34.7 4.5 56 146-208 27-83 (90)
61 cd02948 TRX_NDPK TRX domain, T 93.7 0.13 2.8E-06 35.5 4.4 35 179-214 63-101 (102)
62 cd03418 GRX_GRXb_1_3_like Glut 93.7 0.16 3.5E-06 32.6 4.5 57 146-208 14-71 (75)
63 TIGR02181 GRX_bact Glutaredoxi 93.6 0.16 3.5E-06 33.2 4.5 58 146-209 13-70 (79)
64 PF00085 Thioredoxin: Thioredo 93.5 0.22 4.7E-06 33.8 5.2 36 179-214 63-102 (103)
65 TIGR02661 MauD methylamine deh 93.5 2.3 5E-05 32.9 11.5 29 11-39 73-101 (189)
66 cd02950 TxlA TRX-like protein 93.5 0.19 4.2E-06 37.1 5.2 37 180-216 69-110 (142)
67 COG0695 GrxC Glutaredoxin and 93.5 0.37 8.1E-06 31.9 6.0 59 148-211 17-76 (80)
68 TIGR02189 GlrX-like_plant Glut 93.4 0.3 6.4E-06 33.8 5.7 59 147-208 23-81 (99)
69 PHA03050 glutaredoxin; Provisi 93.4 0.31 6.6E-06 34.3 5.8 60 146-208 27-89 (108)
70 PRK10329 glutaredoxin-like pro 93.3 0.63 1.4E-05 30.8 7.0 60 146-213 15-74 (81)
71 TIGR03757 conj_TIGR03757 integ 93.3 0.26 5.6E-06 34.9 5.2 35 179-213 76-110 (113)
72 cd02985 TRX_CDSP32 TRX family, 93.1 0.61 1.3E-05 32.2 7.0 35 177-212 61-99 (103)
73 cd02949 TRX_NTR TRX domain, no 93.1 0.17 3.7E-06 34.5 4.1 34 179-212 59-96 (97)
74 TIGR00365 monothiol glutaredox 93.0 0.23 5E-06 34.2 4.6 56 146-208 31-87 (97)
75 TIGR02180 GRX_euk Glutaredoxin 93.0 0.44 9.5E-06 31.1 5.9 56 146-204 13-70 (84)
76 cd02956 ybbN ybbN protein fami 92.8 0.2 4.4E-06 33.8 4.2 35 179-213 58-96 (96)
77 PLN02399 phospholipid hydroper 92.7 4.5 9.7E-05 32.7 13.7 39 11-50 98-136 (236)
78 PHA02278 thioredoxin-like prot 92.7 0.24 5.2E-06 34.5 4.4 33 179-211 64-100 (103)
79 cd02976 NrdH NrdH-redoxin (Nrd 92.7 0.41 8.9E-06 30.0 5.3 58 147-211 15-72 (73)
80 PLN02919 haloacid dehalogenase 92.6 2.6 5.6E-05 41.5 12.6 39 11-50 419-457 (1057)
81 cd02949 TRX_NTR TRX domain, no 92.5 0.24 5.2E-06 33.7 4.2 32 11-42 12-43 (97)
82 cd03027 GRX_DEP Glutaredoxin ( 92.5 0.19 4.2E-06 32.3 3.5 55 146-206 15-69 (73)
83 cd03000 PDI_a_TMX3 PDIa family 92.3 0.32 6.8E-06 33.6 4.6 38 179-216 64-104 (104)
84 cd02965 HyaE HyaE family; HyaE 92.2 0.17 3.7E-06 35.8 3.2 57 145-209 48-109 (111)
85 TIGR01126 pdi_dom protein disu 92.2 0.31 6.6E-06 33.0 4.4 39 177-215 59-101 (102)
86 PF06953 ArsD: Arsenical resis 92.1 0.51 1.1E-05 34.0 5.6 63 151-213 35-99 (123)
87 PRK09381 trxA thioredoxin; Pro 92.1 0.42 9.1E-06 33.1 5.1 36 180-215 68-107 (109)
88 TIGR01068 thioredoxin thioredo 92.0 0.38 8.2E-06 32.4 4.7 36 180-215 61-100 (101)
89 cd03012 TlpA_like_DipZ_like Tl 91.9 0.39 8.6E-06 34.3 4.9 45 5-50 16-60 (126)
90 cd03029 GRX_hybridPRX5 Glutare 91.9 0.49 1.1E-05 30.2 4.9 50 148-204 17-66 (72)
91 cd02958 UAS UAS family; UAS is 91.6 0.47 1E-05 33.4 4.9 40 177-216 66-111 (114)
92 cd03027 GRX_DEP Glutaredoxin ( 91.6 0.31 6.7E-06 31.3 3.7 33 15-55 2-34 (73)
93 TIGR02190 GlrX-dom Glutaredoxi 91.4 0.4 8.6E-06 31.5 4.1 53 147-206 23-75 (79)
94 cd02953 DsbDgamma DsbD gamma f 91.4 0.33 7.2E-06 33.4 3.9 35 179-213 64-104 (104)
95 PF00462 Glutaredoxin: Glutare 91.1 0.45 9.7E-06 29.3 3.9 32 16-55 1-32 (60)
96 COG3011 Predicted thiol-disulf 91.1 0.44 9.5E-06 35.0 4.3 42 8-55 2-43 (137)
97 PF13192 Thioredoxin_3: Thiore 90.9 0.55 1.2E-05 30.5 4.4 27 14-41 1-27 (76)
98 PF13728 TraF: F plasmid trans 90.9 5.5 0.00012 31.6 10.9 105 104-212 94-214 (215)
99 PRK13703 conjugal pilus assemb 90.9 0.34 7.4E-06 39.3 4.0 41 13-59 144-184 (248)
100 PF13728 TraF: F plasmid trans 90.8 0.39 8.5E-06 38.2 4.3 42 12-59 120-161 (215)
101 cd02994 PDI_a_TMX PDIa family, 90.7 0.35 7.5E-06 33.0 3.5 35 179-213 63-100 (101)
102 PRK10638 glutaredoxin 3; Provi 90.7 0.61 1.3E-05 30.8 4.6 56 146-207 16-71 (83)
103 cd02967 mauD Methylamine utili 90.2 0.72 1.6E-05 32.0 4.8 44 5-50 13-57 (114)
104 TIGR02183 GRXA Glutaredoxin, G 90.1 1.3 2.7E-05 29.6 5.7 24 184-208 54-77 (86)
105 cd03029 GRX_hybridPRX5 Glutare 90.1 0.45 9.7E-06 30.4 3.4 32 15-54 2-33 (72)
106 PF03227 GILT: Gamma interfero 90.1 0.74 1.6E-05 32.3 4.7 40 14-55 1-43 (108)
107 cd03419 GRX_GRXh_1_2_like Glut 90.1 1.4 2.9E-05 28.6 5.8 57 146-205 14-70 (82)
108 PRK10329 glutaredoxin-like pro 90.0 0.49 1.1E-05 31.3 3.6 33 14-54 1-33 (81)
109 TIGR02187 GlrX_arch Glutaredox 89.8 0.56 1.2E-05 37.1 4.4 40 176-215 66-110 (215)
110 cd02968 SCO SCO (an acronym fo 89.8 0.64 1.4E-05 33.7 4.4 47 6-52 16-65 (142)
111 cd02996 PDI_a_ERp44 PDIa famil 89.7 0.39 8.6E-06 33.3 3.1 34 178-211 69-107 (108)
112 cd02947 TRX_family TRX family; 89.7 0.64 1.4E-05 30.2 4.1 33 180-212 56-92 (93)
113 cd03007 PDI_a_ERp29_N PDIa fam 89.7 0.75 1.6E-05 32.9 4.5 39 176-214 67-114 (116)
114 PHA02125 thioredoxin-like prot 89.6 0.73 1.6E-05 29.8 4.2 34 178-212 37-73 (75)
115 cd02964 TryX_like_family Trypa 89.5 0.97 2.1E-05 32.6 5.2 49 4-52 9-58 (132)
116 cd03009 TryX_like_TryX_NRX Try 89.3 0.93 2E-05 32.5 5.0 48 5-52 11-59 (131)
117 cd02995 PDI_a_PDI_a'_C PDIa fa 89.2 0.95 2.1E-05 30.7 4.7 31 13-43 19-49 (104)
118 PF08534 Redoxin: Redoxin; In 89.0 0.72 1.6E-05 33.7 4.2 47 5-52 21-68 (146)
119 PRK10824 glutaredoxin-4; Provi 89.0 1 2.2E-05 32.1 4.7 55 146-207 34-89 (115)
120 cd03036 ArsC_like Arsenate Red 88.8 1 2.2E-05 31.8 4.6 32 16-55 1-32 (111)
121 KOG1752 Glutaredoxin and relat 88.7 1.5 3.2E-05 30.7 5.3 56 147-205 29-84 (104)
122 cd02961 PDI_a_family Protein D 88.7 1 2.3E-05 29.9 4.6 29 14-42 17-45 (101)
123 PF00578 AhpC-TSA: AhpC/TSA fa 88.7 0.8 1.7E-05 32.2 4.2 40 11-51 24-64 (124)
124 TIGR02190 GlrX-dom Glutaredoxi 88.6 0.67 1.5E-05 30.3 3.5 25 11-35 5-29 (79)
125 TIGR02740 TraF-like TraF-like 88.5 1.7 3.6E-05 35.8 6.4 71 145-216 185-264 (271)
126 PRK09381 trxA thioredoxin; Pro 88.5 0.95 2.1E-05 31.3 4.3 32 12-43 21-52 (109)
127 PF00085 Thioredoxin: Thioredo 88.4 1.3 2.7E-05 29.9 4.9 37 12-50 17-53 (103)
128 cd02966 TlpA_like_family TlpA- 88.1 1.5 3.2E-05 29.7 5.2 38 12-50 19-56 (116)
129 TIGR02200 GlrX_actino Glutared 88.1 3.7 8E-05 26.0 6.8 61 148-213 16-76 (77)
130 cd03418 GRX_GRXb_1_3_like Glut 88.1 0.73 1.6E-05 29.5 3.3 21 15-35 1-21 (75)
131 cd02997 PDI_a_PDIR PDIa family 88.0 0.77 1.7E-05 31.2 3.6 33 179-211 67-103 (104)
132 cd02991 UAS_ETEA UAS family, E 87.7 1.7 3.8E-05 30.9 5.3 41 176-216 65-113 (116)
133 TIGR01126 pdi_dom protein disu 87.7 1.6 3.4E-05 29.4 5.0 33 11-43 12-44 (102)
134 cd03003 PDI_a_ERdj5_N PDIa fam 87.7 1.1 2.4E-05 30.5 4.2 31 13-43 19-49 (101)
135 PRK00293 dipZ thiol:disulfide 87.6 0.9 1.9E-05 41.6 4.7 42 176-217 523-571 (571)
136 COG5494 Predicted thioredoxin/ 87.4 0.85 1.8E-05 35.9 3.7 35 179-213 51-85 (265)
137 cd02984 TRX_PICOT TRX domain, 87.3 1 2.2E-05 30.2 3.8 34 178-212 59-96 (97)
138 cd03004 PDI_a_ERdj5_C PDIa fam 87.1 0.95 2.1E-05 31.0 3.6 34 178-211 64-103 (104)
139 cd02956 ybbN ybbN protein fami 87.0 1.2 2.7E-05 29.8 4.1 33 11-43 11-43 (96)
140 cd03002 PDI_a_MPD1_like PDI fa 86.7 1.1 2.3E-05 30.9 3.7 35 178-212 65-108 (109)
141 TIGR02194 GlrX_NrdH Glutaredox 86.7 0.83 1.8E-05 29.2 3.0 32 16-55 1-32 (72)
142 cd03419 GRX_GRXh_1_2_like Glut 86.6 0.59 1.3E-05 30.4 2.2 21 16-36 2-22 (82)
143 cd03005 PDI_a_ERp46 PDIa famil 86.5 1.1 2.3E-05 30.4 3.6 34 178-211 64-101 (102)
144 TIGR02181 GRX_bact Glutaredoxi 86.4 0.75 1.6E-05 29.9 2.7 20 16-35 1-20 (79)
145 cd02963 TRX_DnaJ TRX domain, D 86.3 1.3 2.8E-05 31.0 4.0 33 11-43 23-55 (111)
146 TIGR02189 GlrX-like_plant Glut 86.3 0.62 1.4E-05 32.1 2.3 22 14-35 8-29 (99)
147 PRK10638 glutaredoxin 3; Provi 86.3 0.79 1.7E-05 30.3 2.7 21 15-35 3-23 (83)
148 cd02998 PDI_a_ERp38 PDIa famil 86.2 1.7 3.8E-05 29.3 4.6 30 13-42 19-48 (105)
149 TIGR02739 TraF type-F conjugat 86.1 17 0.00038 29.7 11.9 92 124-216 141-248 (256)
150 cd03004 PDI_a_ERdj5_C PDIa fam 86.1 1.6 3.5E-05 29.8 4.4 30 13-42 20-49 (104)
151 cd02989 Phd_like_TxnDC9 Phosdu 86.0 1.4 3E-05 31.1 4.1 30 13-42 23-52 (113)
152 cd02982 PDI_b'_family Protein 86.0 3.5 7.6E-05 27.9 6.0 63 145-215 31-102 (103)
153 TIGR02200 GlrX_actino Glutared 85.7 0.75 1.6E-05 29.4 2.4 21 15-35 1-21 (77)
154 cd03003 PDI_a_ERdj5_N PDIa fam 85.6 1.1 2.4E-05 30.5 3.3 33 178-210 63-99 (101)
155 cd02950 TxlA TRX-like protein 85.6 1.9 4.2E-05 31.7 4.8 33 11-43 19-51 (142)
156 cd03002 PDI_a_MPD1_like PDI fa 85.5 1.5 3.2E-05 30.1 4.0 32 12-43 18-49 (109)
157 TIGR02739 TraF type-F conjugat 85.5 1.4 3E-05 36.0 4.2 41 13-59 151-191 (256)
158 PTZ00062 glutaredoxin; Provisi 85.3 3.7 7.9E-05 32.4 6.4 32 183-215 58-93 (204)
159 COG0695 GrxC Glutaredoxin and 85.1 0.91 2E-05 30.0 2.6 21 15-35 2-22 (80)
160 TIGR01068 thioredoxin thioredo 85.0 1.4 3.1E-05 29.4 3.7 31 12-42 14-44 (101)
161 TIGR02183 GRXA Glutaredoxin, G 84.9 1 2.2E-05 30.1 2.8 22 16-37 2-23 (86)
162 cd00340 GSH_Peroxidase Glutath 84.9 1.7 3.7E-05 32.2 4.3 42 6-49 16-57 (152)
163 cd03001 PDI_a_P5 PDIa family, 84.7 1.9 4.2E-05 29.1 4.2 31 12-42 18-48 (103)
164 TIGR02180 GRX_euk Glutaredoxin 84.7 0.77 1.7E-05 29.9 2.1 21 16-36 1-21 (84)
165 cd03010 TlpA_like_DsbE TlpA-li 84.6 2.6 5.6E-05 29.9 5.0 36 5-40 18-53 (127)
166 cd03031 GRX_GRX_like Glutaredo 84.4 1.4 3.1E-05 32.8 3.6 59 146-207 20-79 (147)
167 cd02066 GRX_family Glutaredoxi 84.1 2.4 5.3E-05 26.1 4.2 52 146-203 14-65 (72)
168 cd02965 HyaE HyaE family; HyaE 83.9 1.7 3.6E-05 30.8 3.6 35 9-43 25-60 (111)
169 PHA03050 glutaredoxin; Provisi 83.7 1 2.2E-05 31.7 2.4 22 14-35 13-34 (108)
170 cd02993 PDI_a_APS_reductase PD 83.7 2.4 5.2E-05 29.4 4.4 32 11-42 20-51 (109)
171 cd02999 PDI_a_ERp44_like PDIa 83.6 1.9 4.1E-05 29.6 3.8 34 178-211 63-99 (100)
172 cd02947 TRX_family TRX family; 83.5 3.6 7.7E-05 26.5 5.1 28 13-40 11-38 (93)
173 KOG0907 Thioredoxin [Posttrans 83.3 2.9 6.2E-05 29.3 4.6 38 176-214 63-104 (106)
174 cd02957 Phd_like Phosducin (Ph 83.1 3.3 7.2E-05 28.9 5.0 31 12-42 24-54 (113)
175 cd01659 TRX_superfamily Thiore 83.0 2.4 5.1E-05 24.7 3.8 36 16-54 1-36 (69)
176 PTZ00051 thioredoxin; Provisio 83.0 1.7 3.8E-05 29.2 3.4 31 178-209 62-96 (98)
177 cd03040 GST_N_mPGES2 GST_N fam 82.8 1.8 3.9E-05 27.8 3.2 21 15-35 1-21 (77)
178 cd02997 PDI_a_PDIR PDIa family 82.6 2.4 5.1E-05 28.7 4.0 31 13-43 18-48 (104)
179 cd02998 PDI_a_ERp38 PDIa famil 82.6 1.6 3.5E-05 29.5 3.1 35 177-211 65-104 (105)
180 cd02996 PDI_a_ERp44 PDIa famil 82.5 3.3 7.1E-05 28.5 4.7 31 12-42 18-48 (108)
181 cd03001 PDI_a_P5 PDIa family, 82.5 2.6 5.6E-05 28.5 4.1 35 177-211 62-101 (103)
182 smart00594 UAS UAS domain. 82.5 2.3 5E-05 30.3 4.0 36 177-212 76-121 (122)
183 PTZ00051 thioredoxin; Provisio 82.4 2.6 5.6E-05 28.3 4.1 32 11-42 17-48 (98)
184 cd03000 PDI_a_TMX3 PDIa family 82.2 3 6.4E-05 28.6 4.4 32 11-42 14-45 (104)
185 cd02971 PRX_family Peroxiredox 82.1 1.9 4.1E-05 31.0 3.5 39 11-50 22-60 (140)
186 cd02066 GRX_family Glutaredoxi 81.6 1.7 3.6E-05 26.9 2.7 20 16-35 2-21 (72)
187 PRK13703 conjugal pilus assemb 80.9 29 0.00062 28.3 11.7 92 124-216 134-241 (248)
188 PTZ00256 glutathione peroxidas 80.7 23 0.0005 27.1 13.9 37 13-50 42-78 (183)
189 cd02955 SSP411 TRX domain, SSP 80.6 7.1 0.00015 28.1 6.0 35 182-216 75-122 (124)
190 cd02961 PDI_a_family Protein D 80.1 2.5 5.3E-05 28.0 3.3 35 176-210 60-99 (101)
191 cd02948 TRX_NDPK TRX domain, T 79.9 5.8 0.00012 27.1 5.2 31 12-42 17-47 (102)
192 cd02977 ArsC_family Arsenate R 79.9 1.9 4E-05 29.9 2.7 32 16-55 1-32 (105)
193 cd02982 PDI_b'_family Protein 79.8 3.9 8.5E-05 27.6 4.3 39 12-52 12-50 (103)
194 PRK12759 bifunctional gluaredo 79.8 3.8 8.1E-05 35.9 5.1 60 147-207 17-79 (410)
195 TIGR00365 monothiol glutaredox 79.7 1.8 3.9E-05 29.7 2.5 14 22-35 25-38 (97)
196 cd02970 PRX_like2 Peroxiredoxi 79.1 3.7 8.1E-05 29.7 4.2 38 12-50 24-61 (149)
197 cd02999 PDI_a_ERp44_like PDIa 79.1 5.8 0.00013 27.1 4.9 32 11-42 17-48 (100)
198 cd02952 TRP14_like Human TRX-r 78.8 3.6 7.8E-05 29.5 3.9 32 11-42 21-58 (119)
199 PTZ00443 Thioredoxin domain-co 78.4 5.2 0.00011 32.0 5.1 37 178-214 97-137 (224)
200 cd03032 ArsC_Spx Arsenate Redu 78.2 3.1 6.8E-05 29.4 3.5 32 16-55 2-33 (115)
201 PF04134 DUF393: Protein of un 78.0 2.3 5E-05 29.7 2.7 32 18-55 1-32 (114)
202 TIGR01617 arsC_related transcr 77.8 2.5 5.4E-05 30.0 2.8 32 16-55 1-32 (117)
203 PRK01655 spxA transcriptional 77.4 2.9 6.3E-05 30.4 3.1 32 16-55 2-33 (131)
204 cd02954 DIM1 Dim1 family; Dim1 77.3 2.2 4.8E-05 30.3 2.4 20 177-196 58-79 (114)
205 KOG0908 Thioredoxin-like prote 77.2 5 0.00011 32.6 4.5 43 172-215 59-105 (288)
206 cd03055 GST_N_Omega GST_N fami 76.5 4.6 9.9E-05 26.9 3.7 24 11-34 14-37 (89)
207 TIGR02196 GlrX_YruB Glutaredox 76.2 2.9 6.2E-05 26.0 2.6 20 16-35 2-21 (74)
208 cd03030 GRX_SH3BGR Glutaredoxi 76.1 5.3 0.00012 27.2 3.9 59 146-207 20-79 (92)
209 cd03033 ArsC_15kD Arsenate Red 76.0 3.4 7.5E-05 29.2 3.1 32 16-55 2-33 (113)
210 COG3118 Thioredoxin domain-con 75.9 3.4 7.4E-05 34.4 3.4 40 176-215 86-129 (304)
211 PRK13344 spxA transcriptional 75.8 3.7 8E-05 29.9 3.3 32 16-55 2-33 (132)
212 PRK12559 transcriptional regul 75.0 4.7 0.0001 29.3 3.7 32 16-55 2-33 (131)
213 TIGR02740 TraF-like TraF-like 74.8 6.4 0.00014 32.4 4.9 41 12-58 166-206 (271)
214 cd03035 ArsC_Yffb Arsenate Red 74.6 3.6 7.7E-05 28.7 2.9 32 16-55 1-32 (105)
215 cd02962 TMX2 TMX2 family; comp 74.6 8.1 0.00018 28.9 5.0 31 12-42 47-77 (152)
216 cd03006 PDI_a_EFP1_N PDIa fami 74.6 6.7 0.00015 27.7 4.3 34 10-43 27-60 (113)
217 TIGR03143 AhpF_homolog putativ 74.4 6.1 0.00013 36.0 5.1 40 11-53 475-514 (555)
218 cd02992 PDI_a_QSOX PDIa family 73.8 7.5 0.00016 27.3 4.4 30 13-42 20-49 (114)
219 TIGR03140 AhpF alkyl hydropero 73.7 6.3 0.00014 35.5 4.9 37 12-51 117-153 (515)
220 PRK15317 alkyl hydroperoxide r 73.6 6.4 0.00014 35.5 5.0 39 11-52 115-153 (517)
221 PRK13728 conjugal transfer pro 72.9 4.8 0.00011 31.1 3.5 26 16-41 73-98 (181)
222 PTZ00102 disulphide isomerase; 72.7 6.3 0.00014 34.8 4.7 40 177-216 96-138 (477)
223 TIGR02738 TrbB type-F conjugat 72.7 6.8 0.00015 29.3 4.2 30 12-41 50-79 (153)
224 cd02953 DsbDgamma DsbD gamma f 72.7 9.2 0.0002 26.0 4.6 31 12-42 11-44 (104)
225 cd03005 PDI_a_ERp46 PDIa famil 72.6 6.8 0.00015 26.2 3.9 29 15-43 19-47 (102)
226 cd02954 DIM1 Dim1 family; Dim1 72.4 8.6 0.00019 27.3 4.4 33 11-43 13-45 (114)
227 COG3118 Thioredoxin domain-con 72.2 2.6 5.6E-05 35.0 1.9 31 14-44 45-75 (304)
228 cd02994 PDI_a_TMX PDIa family, 71.9 7.9 0.00017 26.1 4.1 28 15-42 19-46 (101)
229 cd02983 P5_C P5 family, C-term 71.2 25 0.00053 25.4 6.7 65 145-216 43-115 (130)
230 cd02987 Phd_like_Phd Phosducin 71.1 9.9 0.00021 29.1 4.8 30 13-42 84-113 (175)
231 cd02957 Phd_like Phosducin (Ph 70.5 5 0.00011 28.0 2.9 19 178-196 67-87 (113)
232 PRK10996 thioredoxin 2; Provis 70.5 8.6 0.00019 28.1 4.2 32 12-43 52-83 (139)
233 cd02975 PfPDO_like_N Pyrococcu 70.2 13 0.00028 26.1 4.9 29 13-41 22-51 (113)
234 cd03006 PDI_a_EFP1_N PDIa fami 70.0 5.7 0.00012 28.0 3.1 33 178-210 74-111 (113)
235 cd03028 GRX_PICOT_like Glutare 69.5 5.1 0.00011 26.9 2.6 21 15-35 9-34 (90)
236 PRK12759 bifunctional gluaredo 69.4 4 8.8E-05 35.7 2.6 22 15-36 3-24 (410)
237 cd03017 PRX_BCP Peroxiredoxin 68.8 6.8 0.00015 28.1 3.4 38 12-50 23-61 (140)
238 KOG3425 Uncharacterized conser 68.7 7.2 0.00016 28.0 3.3 38 11-50 25-69 (128)
239 PRK10824 glutaredoxin-4; Provi 68.7 5.2 0.00011 28.5 2.6 15 22-36 28-42 (115)
240 cd02984 TRX_PICOT TRX domain, 68.6 11 0.00023 25.1 4.2 30 12-41 14-43 (97)
241 cd02989 Phd_like_TxnDC9 Phosdu 68.5 5 0.00011 28.2 2.5 19 178-196 66-86 (113)
242 cd03018 PRX_AhpE_like Peroxire 68.4 7.4 0.00016 28.3 3.5 37 13-50 30-66 (149)
243 cd02951 SoxW SoxW family; SoxW 67.9 5.3 0.00011 28.3 2.6 23 13-35 15-37 (125)
244 PTZ00443 Thioredoxin domain-co 67.6 9.3 0.0002 30.6 4.1 31 13-43 53-83 (224)
245 PHA02278 thioredoxin-like prot 67.2 11 0.00025 26.0 4.1 31 11-41 13-43 (103)
246 cd02985 TRX_CDSP32 TRX family, 67.1 11 0.00025 25.7 4.1 31 11-41 14-44 (103)
247 PHA02125 thioredoxin-like prot 66.6 7.5 0.00016 24.9 2.9 22 16-37 2-23 (75)
248 cd02976 NrdH NrdH-redoxin (Nrd 66.5 7 0.00015 24.1 2.7 20 16-35 2-21 (73)
249 PF07449 HyaE: Hydrogenase-1 e 66.4 12 0.00026 26.3 4.0 33 175-207 70-106 (107)
250 COG0526 TrxA Thiol-disulfide i 66.2 16 0.00034 24.1 4.8 30 14-43 34-63 (127)
251 cd03041 GST_N_2GST_N GST_N fam 65.8 5.9 0.00013 25.5 2.3 20 16-35 2-21 (77)
252 TIGR01130 ER_PDI_fam protein d 65.4 12 0.00027 32.6 4.9 38 178-215 66-108 (462)
253 TIGR01626 ytfJ_HI0045 conserve 65.1 17 0.00037 28.2 5.0 39 178-216 136-180 (184)
254 PHA01083 hypothetical protein 64.8 10 0.00022 28.1 3.5 27 136-162 36-63 (149)
255 cd03053 GST_N_Phi GST_N family 64.3 9.6 0.00021 24.1 3.1 21 15-35 1-21 (76)
256 PLN00410 U5 snRNP protein, DIM 64.0 12 0.00025 27.8 3.8 62 146-215 43-119 (142)
257 PF06764 DUF1223: Protein of u 63.7 22 0.00047 28.0 5.5 25 16-40 2-26 (202)
258 cd02992 PDI_a_QSOX PDIa family 63.7 5.1 0.00011 28.1 1.8 16 178-193 69-84 (114)
259 TIGR02738 TrbB type-F conjugat 62.9 13 0.00029 27.7 4.0 32 184-215 115-152 (153)
260 cd03045 GST_N_Delta_Epsilon GS 62.7 9.1 0.0002 24.0 2.8 19 16-34 1-19 (74)
261 PTZ00102 disulphide isomerase; 62.6 16 0.00036 32.2 5.2 39 12-50 375-413 (477)
262 TIGR02742 TrbC_Ftype type-F co 62.3 19 0.00041 26.2 4.6 34 180-213 64-112 (130)
263 cd03010 TlpA_like_DsbE TlpA-li 62.1 8.9 0.00019 27.1 2.9 56 144-208 66-126 (127)
264 PF14595 Thioredoxin_9: Thiore 61.5 15 0.00032 26.6 3.9 39 11-52 40-78 (129)
265 KOG0190 Protein disulfide isom 61.3 12 0.00027 33.5 4.1 38 177-214 89-130 (493)
266 cd02987 Phd_like_Phd Phosducin 60.9 17 0.00037 27.8 4.4 59 146-214 103-173 (175)
267 PF06110 DUF953: Eukaryotic pr 60.6 35 0.00076 24.4 5.6 43 10-54 18-66 (119)
268 cd02952 TRP14_like Human TRX-r 59.7 19 0.00042 25.7 4.2 18 176-193 78-96 (119)
269 cd02962 TMX2 TMX2 family; comp 59.6 36 0.00079 25.4 5.8 18 179-196 94-119 (152)
270 PRK13728 conjugal transfer pro 59.5 40 0.00087 26.0 6.2 37 180-216 127-171 (181)
271 PRK09437 bcp thioredoxin-depen 59.3 16 0.00035 26.8 3.9 38 12-50 31-68 (154)
272 cd03051 GST_N_GTT2_like GST_N 59.2 11 0.00024 23.4 2.7 19 17-35 2-20 (74)
273 cd03037 GST_N_GRX2 GST_N famil 59.2 12 0.00025 23.4 2.8 30 17-54 2-31 (71)
274 cd02988 Phd_like_VIAF Phosduci 58.7 27 0.00058 27.2 5.2 30 13-42 103-132 (192)
275 COG1992 Uncharacterized conser 58.5 83 0.0018 24.3 7.6 99 103-215 69-177 (181)
276 cd03014 PRX_Atyp2cys Peroxired 58.3 20 0.00044 25.8 4.3 30 13-42 28-57 (143)
277 PF05768 DUF836: Glutaredoxin- 57.0 14 0.0003 24.2 2.9 36 15-54 1-36 (81)
278 TIGR01616 nitro_assoc nitrogen 56.8 15 0.00033 26.5 3.3 33 15-55 2-34 (126)
279 cd03017 PRX_BCP Peroxiredoxin 54.7 53 0.0012 23.3 6.0 61 142-212 65-139 (140)
280 PF06053 DUF929: Domain of unk 54.2 32 0.0007 28.0 5.0 33 10-42 56-88 (249)
281 cd03059 GST_N_SspA GST_N famil 54.0 18 0.00038 22.5 3.0 18 17-34 2-19 (73)
282 cd03060 GST_N_Omega_like GST_N 53.7 18 0.00039 22.6 3.0 19 17-35 2-20 (71)
283 PRK09437 bcp thioredoxin-depen 53.7 84 0.0018 22.8 7.5 66 141-216 71-153 (154)
284 cd03015 PRX_Typ2cys Peroxiredo 53.4 18 0.0004 27.2 3.4 39 11-50 28-67 (173)
285 TIGR02629 L_rham_iso_rhiz L-rh 52.3 59 0.0013 28.5 6.6 71 144-215 99-197 (412)
286 PLN02309 5'-adenylylsulfate re 52.1 30 0.00064 30.9 4.9 33 10-42 363-395 (457)
287 PRK10606 btuE putative glutath 51.2 31 0.00068 26.6 4.4 42 11-54 24-65 (183)
288 PRK10026 arsenate reductase; P 51.0 22 0.00048 26.3 3.4 33 15-55 3-35 (141)
289 TIGR00424 APS_reduc 5'-adenyly 50.9 31 0.00066 30.9 4.8 33 11-43 370-402 (463)
290 PHA03075 glutaredoxin-like pro 50.7 30 0.00065 24.7 3.8 41 13-56 2-42 (123)
291 cd00570 GST_N_family Glutathio 50.1 21 0.00046 21.3 2.9 19 17-35 2-20 (71)
292 COG1393 ArsC Arsenate reductas 49.9 91 0.002 22.1 7.0 33 15-55 2-34 (117)
293 PF05605 zf-Di19: Drought indu 49.8 6.7 0.00015 23.6 0.4 20 21-41 2-21 (54)
294 cd03056 GST_N_4 GST_N family, 48.8 20 0.00044 22.2 2.6 18 17-34 2-19 (73)
295 COG3634 AhpF Alkyl hydroperoxi 48.1 19 0.0004 31.2 2.9 34 180-213 162-195 (520)
296 PF11287 DUF3088: Protein of u 47.9 11 0.00024 26.6 1.3 30 22-55 22-52 (112)
297 PF04592 SelP_N: Selenoprotein 47.7 25 0.00053 28.4 3.4 46 10-55 24-69 (238)
298 COG4232 Thiol:disulfide interc 47.5 32 0.00068 31.5 4.4 41 176-216 523-568 (569)
299 cd02959 ERp19 Endoplasmic reti 46.9 39 0.00085 23.8 4.1 28 12-39 19-46 (117)
300 TIGR01130 ER_PDI_fam protein d 46.7 45 0.00097 29.0 5.3 32 12-43 364-395 (462)
301 COG1651 DsbG Protein-disulfide 46.6 19 0.00042 28.6 2.8 29 10-38 116-144 (244)
302 KOG0191 Thioredoxin/protein di 46.5 29 0.00062 30.0 4.0 32 12-43 162-193 (383)
303 KOG1752 Glutaredoxin and relat 45.6 24 0.00051 24.6 2.7 22 14-35 14-35 (104)
304 COG1905 NuoE NADH:ubiquinone o 45.6 30 0.00065 26.2 3.4 29 186-216 129-157 (160)
305 cd03031 GRX_GRX_like Glutaredo 44.7 34 0.00074 25.4 3.6 32 16-55 2-39 (147)
306 PHA01976 helix-turn-helix prot 44.3 24 0.00052 21.8 2.4 27 136-162 35-61 (67)
307 cd03081 TRX_Fd_NuoE_FDH_gamma 44.0 33 0.00071 22.4 3.1 27 186-214 53-79 (80)
308 KOG0907 Thioredoxin [Posttrans 43.4 45 0.00098 23.2 3.9 32 12-43 21-52 (106)
309 PF13417 GST_N_3: Glutathione 43.0 60 0.0013 20.5 4.2 30 18-55 1-30 (75)
310 TIGR00014 arsC arsenate reduct 42.4 29 0.00062 24.4 2.8 32 16-55 1-32 (114)
311 PRK13730 conjugal transfer pil 42.2 50 0.0011 26.1 4.2 36 176-211 151-189 (212)
312 KOG0190 Protein disulfide isom 40.4 45 0.00097 30.0 4.2 39 13-51 385-423 (493)
313 PF00352 TBP: Transcription fa 40.1 47 0.001 22.0 3.4 23 194-216 57-79 (86)
314 PF09673 TrbC_Ftype: Type-F co 39.3 50 0.0011 23.2 3.6 14 180-193 64-77 (113)
315 KOG1879 UDP-glucose:glycoprote 39.1 4.5E+02 0.0097 27.0 10.9 141 11-196 462-606 (1470)
316 COG1951 TtdA Tartrate dehydrat 38.7 1.7E+02 0.0038 24.5 7.1 46 170-215 49-100 (297)
317 KOG2824 Glutaredoxin-related p 38.3 44 0.00096 27.6 3.5 53 147-203 152-206 (281)
318 PF10120 Aldolase_2: Putative 38.3 65 0.0014 24.6 4.3 96 103-212 62-168 (170)
319 PF12844 HTH_19: Helix-turn-he 38.2 25 0.00055 21.4 1.8 27 136-162 32-58 (64)
320 PF05768 DUF836: Glutaredoxin- 37.5 57 0.0012 21.2 3.5 34 179-213 42-81 (81)
321 COG1999 Uncharacterized protei 37.1 1.1E+02 0.0024 24.0 5.7 56 5-60 60-116 (207)
322 PF01667 Ribosomal_S27e: Ribos 37.1 14 0.0003 22.7 0.4 12 18-29 4-15 (55)
323 COG0241 HisB Histidinol phosph 37.0 86 0.0019 24.2 4.8 46 144-197 107-153 (181)
324 TIGR01501 MthylAspMutase methy 36.7 1.7E+02 0.0036 21.4 7.0 55 139-196 36-91 (134)
325 TIGR03137 AhpC peroxiredoxin. 36.5 46 0.00099 25.5 3.3 39 11-50 30-69 (187)
326 PRK10853 putative reductase; P 36.3 40 0.00087 23.9 2.8 32 16-55 2-33 (118)
327 PF13419 HAD_2: Haloacid dehal 36.3 90 0.002 22.5 4.9 39 143-187 134-173 (176)
328 smart00530 HTH_XRE Helix-turn- 36.2 55 0.0012 18.0 3.0 26 136-161 30-55 (56)
329 PF13242 Hydrolase_like: HAD-h 36.1 56 0.0012 20.7 3.3 42 144-193 6-48 (75)
330 PF02630 SCO1-SenC: SCO1/SenC; 35.7 68 0.0015 24.3 4.1 54 5-59 45-99 (174)
331 PF07293 DUF1450: Protein of u 35.3 61 0.0013 21.3 3.3 26 186-213 44-69 (78)
332 COG5429 Uncharacterized secret 35.2 52 0.0011 26.6 3.4 47 170-217 94-142 (261)
333 cd00086 homeodomain Homeodomai 35.1 65 0.0014 18.9 3.3 29 133-162 16-44 (59)
334 cd02986 DLP Dim1 family, Dim1- 34.9 86 0.0019 22.3 4.2 32 11-42 13-44 (114)
335 TIGR00424 APS_reduc 5'-adenyly 34.9 61 0.0013 29.0 4.2 35 181-215 422-462 (463)
336 PLN00410 U5 snRNP protein, DIM 34.7 88 0.0019 23.1 4.4 32 12-43 23-54 (142)
337 COG1102 Cmk Cytidylate kinase 34.3 46 0.001 25.5 2.8 41 142-182 29-72 (179)
338 COG4187 RocB Arginine degradat 34.2 91 0.002 27.9 4.9 49 9-57 408-465 (553)
339 cd03082 TRX_Fd_NuoE_W_FDH_beta 34.1 61 0.0013 20.7 3.1 26 186-213 45-70 (72)
340 PRK11700 hypothetical protein; 34.0 89 0.0019 24.3 4.4 49 146-194 22-81 (187)
341 PF01381 HTH_3: Helix-turn-hel 33.8 33 0.00072 20.1 1.8 25 137-161 30-54 (55)
342 KOG2501 Thioredoxin, nucleored 33.7 79 0.0017 23.8 4.0 44 11-54 32-76 (157)
343 cd03034 ArsC_ArsC Arsenate Red 33.6 48 0.001 23.1 2.8 32 16-55 1-32 (112)
344 PF04275 P-mevalo_kinase: Phos 33.3 53 0.0012 23.4 2.9 29 149-178 36-64 (116)
345 cd03074 PDI_b'_Calsequestrin_C 33.2 1.6E+02 0.0036 20.8 5.2 42 11-52 19-60 (120)
346 PTZ00445 p36-lilke protein; Pr 33.1 56 0.0012 26.0 3.3 34 149-188 168-202 (219)
347 PF00046 Homeobox: Homeobox do 33.0 49 0.0011 19.6 2.5 28 134-162 17-44 (57)
348 PRK09430 djlA Dna-J like membr 32.6 89 0.0019 25.7 4.6 41 122-162 127-168 (267)
349 PF00356 LacI: Bacterial regul 32.0 74 0.0016 18.5 3.0 31 148-178 2-35 (46)
350 PF03470 zf-XS: XS zinc finger 31.9 16 0.00035 21.1 0.1 7 24-30 1-7 (43)
351 PF08298 AAA_PrkA: PrkA AAA do 31.8 49 0.0011 28.5 3.0 28 21-54 151-179 (358)
352 PRK13669 hypothetical protein; 31.6 78 0.0017 20.9 3.3 26 186-213 44-69 (78)
353 PF05369 MtmB: Monomethylamine 30.3 1.7E+02 0.0037 25.9 5.9 21 83-104 32-52 (457)
354 PF01257 2Fe-2S_thioredx: Thio 30.3 42 0.0009 24.8 2.1 28 187-216 118-145 (145)
355 COG3019 Predicted metal-bindin 30.2 75 0.0016 23.5 3.3 27 186-213 75-101 (149)
356 TIGR02826 RNR_activ_nrdG3 anae 29.9 37 0.0008 25.2 1.8 18 13-30 15-35 (147)
357 TIGR02635 RhaI_grampos L-rhamn 29.8 2.7E+02 0.0059 24.2 7.2 64 143-207 69-151 (378)
358 TIGR02049 gshA_ferroox glutama 29.0 3.2E+02 0.007 23.8 7.3 70 145-214 196-288 (403)
359 PF03190 Thioredox_DsbH: Prote 28.4 82 0.0018 23.9 3.4 16 184-199 99-117 (163)
360 PRK05988 formate dehydrogenase 28.3 1E+02 0.0022 23.1 3.9 29 186-216 127-155 (156)
361 PF02114 Phosducin: Phosducin; 28.2 2.3E+02 0.005 23.3 6.3 32 12-43 146-177 (265)
362 PRK07998 gatY putative fructos 28.0 2.5E+02 0.0055 23.3 6.5 21 142-162 152-172 (283)
363 PRK07571 bidirectional hydroge 27.8 1.1E+02 0.0023 23.4 4.0 29 186-216 140-168 (169)
364 COG1725 Predicted transcriptio 27.2 2.4E+02 0.0053 20.3 6.1 46 136-195 29-78 (125)
365 PF07315 DUF1462: Protein of u 27.2 1.2E+02 0.0027 20.5 3.7 24 188-211 68-91 (93)
366 KOG4080 Mitochondrial ribosoma 27.1 46 0.001 25.2 1.8 19 20-38 105-123 (176)
367 smart00389 HOX Homeodomain. DN 27.1 1.2E+02 0.0027 17.5 3.5 29 133-162 16-44 (56)
368 PRK08573 phosphomethylpyrimidi 26.8 2.6E+02 0.0057 24.7 6.9 96 103-212 336-444 (448)
369 COG0177 Nth Predicted EndoIII- 26.3 1.6E+02 0.0035 23.4 4.8 93 123-215 46-166 (211)
370 COG3019 Predicted metal-bindin 26.3 92 0.002 23.1 3.2 25 11-35 23-47 (149)
371 KOG4277 Uncharacterized conser 26.2 1.1E+02 0.0024 25.8 4.0 36 178-213 91-129 (468)
372 PF02662 FlpD: Methyl-viologen 26.0 78 0.0017 22.7 2.8 24 146-169 80-106 (124)
373 PRK00522 tpx lipid hydroperoxi 25.9 1.4E+02 0.0031 22.2 4.5 29 13-41 46-74 (167)
374 PF03811 Zn_Tnp_IS1: InsA N-te 25.8 23 0.0005 19.5 0.0 11 21-31 5-15 (36)
375 TIGR02252 DREG-2 REG-2-like, H 25.7 1.4E+02 0.0031 22.6 4.6 40 143-187 161-201 (203)
376 cd03058 GST_N_Tau GST_N family 25.6 64 0.0014 20.1 2.2 19 17-35 2-20 (74)
377 PF07098 DUF1360: Protein of u 25.5 26 0.00056 24.5 0.2 13 22-34 58-70 (105)
378 cd03049 GST_N_3 GST_N family, 25.4 63 0.0014 20.0 2.1 18 17-34 2-19 (73)
379 COG3084 Uncharacterized protei 25.4 1.2E+02 0.0026 19.7 3.2 30 131-160 12-41 (88)
380 PF13899 Thioredoxin_7: Thiore 24.9 77 0.0017 20.4 2.5 23 12-34 17-39 (82)
381 PLN00062 TATA-box-binding prot 24.7 1.1E+02 0.0023 23.6 3.5 24 192-215 144-167 (179)
382 cd03052 GST_N_GDAP1 GST_N fami 24.5 84 0.0018 19.8 2.5 16 17-32 2-17 (73)
383 PF01116 F_bP_aldolase: Fructo 24.4 3.8E+02 0.0083 22.3 7.0 63 142-213 154-226 (287)
384 PF14255 Cys_rich_CPXG: Cystei 24.3 29 0.00063 20.9 0.3 10 22-31 1-10 (52)
385 cd03083 TRX_Fd_NuoE_hoxF TRX-l 24.3 1.1E+02 0.0023 19.9 3.1 27 186-214 53-79 (80)
386 PRK09726 antitoxin HipB; Provi 23.8 1.6E+02 0.0034 19.4 3.9 27 136-162 45-71 (88)
387 COG3793 TerB Tellurite resista 23.7 1.5E+02 0.0032 22.0 3.9 39 124-162 103-142 (144)
388 cd03064 TRX_Fd_NuoE TRX-like [ 23.7 1.2E+02 0.0026 19.4 3.3 27 186-214 53-79 (80)
389 TIGR01858 tag_bisphos_ald clas 23.7 3.9E+02 0.0084 22.2 6.8 62 142-213 152-221 (282)
390 PRK09195 gatY tagatose-bisphos 23.6 4E+02 0.0086 22.2 6.9 62 142-213 154-223 (284)
391 COG1908 FrhD Coenzyme F420-red 23.6 1E+02 0.0022 22.2 2.9 41 145-185 80-126 (132)
392 KOG0496 Beta-galactosidase [Ca 23.4 1.2E+02 0.0026 28.2 4.1 44 171-214 49-99 (649)
393 COG5309 Exo-beta-1,3-glucanase 23.3 4.1E+02 0.0088 22.2 6.6 77 139-216 83-162 (305)
394 cd04516 TBP_eukaryotes eukaryo 23.1 1.2E+02 0.0026 23.2 3.5 23 194-216 146-168 (174)
395 PF14424 Toxin-deaminase: The 23.0 1.7E+02 0.0038 21.2 4.2 33 14-50 97-130 (133)
396 KOG1779 40s ribosomal protein 22.8 34 0.00074 22.5 0.4 14 17-30 30-43 (84)
397 PF14338 Mrr_N: Mrr N-terminal 22.7 2.4E+02 0.0052 18.7 5.6 66 125-190 3-74 (92)
398 PF07908 D-aminoacyl_C: D-amin 22.5 90 0.0019 18.2 2.2 16 185-200 17-32 (48)
399 PF15616 TerY-C: TerY-C metal 22.5 29 0.00062 25.3 -0.0 8 22-29 106-113 (131)
400 cd03050 GST_N_Theta GST_N fami 22.5 1.1E+02 0.0023 19.1 2.8 19 16-34 1-19 (76)
401 PTZ00083 40S ribosomal protein 22.5 36 0.00078 22.8 0.4 12 18-29 32-43 (85)
402 PF01890 CbiG_C: Cobalamin syn 22.4 2.3E+02 0.0051 20.1 4.7 42 150-194 23-65 (121)
403 COG0191 Fba Fructose/tagatose 22.4 3.4E+02 0.0074 22.7 6.2 63 141-213 154-225 (286)
404 PRK12737 gatY tagatose-bisphos 21.9 4.4E+02 0.0096 21.9 6.9 62 142-213 154-223 (284)
405 PLN02309 5'-adenylylsulfate re 21.9 1.3E+02 0.0029 26.8 4.0 37 179-215 413-456 (457)
406 PF10668 Phage_terminase: Phag 21.8 1.3E+02 0.0028 18.7 2.8 16 147-162 24-39 (60)
407 PLN00209 ribosomal protein S27 21.8 38 0.00082 22.7 0.5 12 18-29 33-44 (86)
408 PRK12738 kbaY tagatose-bisphos 21.6 4.3E+02 0.0092 22.0 6.7 62 142-213 154-223 (286)
409 COG2844 GlnD UTP:GlnB (protein 21.6 3.8E+02 0.0082 26.0 6.9 28 134-162 539-566 (867)
410 TIGR03070 couple_hipB transcri 21.5 1.4E+02 0.0031 17.1 3.1 23 136-158 35-57 (58)
411 PF13496 DUF4120: Domain of un 21.4 46 0.00099 22.2 0.8 24 10-34 37-60 (95)
412 PRK00394 transcription factor; 21.4 1.5E+02 0.0031 22.9 3.7 25 192-216 145-169 (179)
413 TIGR01656 Histidinol-ppas hist 21.3 1.5E+02 0.0032 21.5 3.6 39 143-187 102-141 (147)
414 PF02977 CarbpepA_inh: Carboxy 21.3 31 0.00067 20.2 -0.0 10 22-31 22-31 (46)
415 PRK00415 rps27e 30S ribosomal 21.3 38 0.00083 21.0 0.4 12 18-29 8-19 (59)
416 TIGR01993 Pyr-5-nucltdase pyri 21.2 1.8E+02 0.0038 21.7 4.2 38 144-187 143-181 (184)
417 COG4229 Predicted enolase-phos 21.1 1.6E+02 0.0035 23.1 3.7 55 105-166 128-185 (229)
418 TIGR02491 NrdG anaerobic ribon 21.1 44 0.00095 24.8 0.8 16 14-29 16-34 (154)
419 PF01883 DUF59: Domain of unkn 20.9 2.2E+02 0.0049 17.7 4.1 32 12-43 34-66 (72)
420 cd02148 Nitroreductase_5 Nitro 20.6 1.4E+02 0.0029 22.7 3.4 53 140-193 18-78 (185)
No 1
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.8e-47 Score=294.46 Aligned_cols=206 Identities=37% Similarity=0.677 Sum_probs=193.7
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCC--cHHHHHHHHH
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMT 87 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~ 87 (217)
.+.+++|++|+|+.|||||+++++|++++.+|+....++++|+||.|.+..+..|.+..+++..+||. +.+.+...+.
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~ 81 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLE 81 (225)
T ss_pred CCceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHH
Confidence 46799999999999999999999999999999988899999999999999888888889999999987 3466777889
Q ss_pred HHHHhcCCccccCCC--CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910 88 EVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F 163 (217)
Q Consensus 88 ~~a~~~g~~~~~~~~--~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~ 163 (217)
+.+...|+.+++... .+||..||+++.+|+.+|+ .+.+|.++||+++|.+|+||+|.++|.+||+++|||.+++ .
T Consensus 82 ~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~ 160 (225)
T COG2761 82 ELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKAD 160 (225)
T ss_pred HhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999874 5899999999999999997 7999999999999999999999999999999999999999 8
Q ss_pred ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
+.|+..++.++++.+.++++||+|||||||+|+|.++|+++++.|+.+|++++
T Consensus 161 L~s~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 161 LASDAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred HhChHHHHHHHHHHHHHHHCCCccCceEEEcCcEeecCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999875
No 2
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=100.00 E-value=2.1e-40 Score=260.88 Aligned_cols=196 Identities=43% Similarity=0.804 Sum_probs=176.5
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCC--cHHHHHHHHHHHHHhc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGL 93 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~ 93 (217)
|++|+|+.|||||++.++|++++++|+.+.+++|+|+||.|++..+..|......+..+++. +..+++.++.++++.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~ 80 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE 80 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 67999999999999999999999988643479999999999998877776656666666665 5567778999999999
Q ss_pred CCccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccc
Q 027910 94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSG 170 (217)
Q Consensus 94 g~~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~ 170 (217)
|++|+++.. +++|..+++++.+|+.+|. ..+|+++||+++|.+|+++++.++|.++++++|||.+++ .+++++++
T Consensus 81 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 158 (201)
T cd03024 81 GLEFDFDRVRPPNTFDAHRLIHLAKEQGK--QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA 158 (201)
T ss_pred CCcccCCCCccCCcHHHHHHHHHHhccCc--HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence 999998765 4599999999999988876 999999999999999999999999999999999999988 89999999
Q ss_pred hhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 171 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 171 ~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
+.+.++.+.+.+.||+|||||+|||++.+.|+++++.|.++|+
T Consensus 159 ~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 159 DEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQALR 201 (201)
T ss_pred hHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999874
No 3
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=100.00 E-value=5.8e-38 Score=245.21 Aligned_cols=189 Identities=29% Similarity=0.522 Sum_probs=161.2
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCC-CCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRGL 93 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 93 (217)
||++|+|+.|||||+++++|.++.++++ +++|+|+|+.|.+..... |....+ ...+..+++.++.++++.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~---~~~i~~~p~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~a~~~ 72 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP---DVEIEWRPFPLRPDMRRSGGAPPAE-----DPAKAEYMFQDLERWARRY 72 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT---TCEEEEEEESSSTHHHHCT-SCGCG-----SHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCcEEEeccccccccccCCCCCccc-----ChhHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999773 599999999998764322 222211 1125788999999999999
Q ss_pred CCccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccc
Q 027910 94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSG 170 (217)
Q Consensus 94 g~~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~ 170 (217)
|++++++.. +.+|..+++++.+++.+|. ..++++++|+++|.+|+||++.++|.++++++|+|.+++ .+++++++
T Consensus 73 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~ 150 (193)
T PF01323_consen 73 GIPFNFPPPFPGNSRPAHRAAYAAQEQGK--ADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDSPEVK 150 (193)
T ss_dssp T--TBTSSTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTSHHHH
T ss_pred cCcccCCchhhhhhHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcchHHH
Confidence 999998764 2488999999999999885 999999999999999999999999999999999999998 78999999
Q ss_pred hhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 171 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 171 ~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
+.+.++.+.+.++||+|||||+|||++.+.|.++.+.|+++|+
T Consensus 151 ~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 151 AALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHhC
Confidence 9999999999999999999999999988999999999999884
No 4
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=100.00 E-value=9.1e-37 Score=238.37 Aligned_cols=188 Identities=21% Similarity=0.307 Sum_probs=161.0
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCC
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGL 95 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 95 (217)
|++|+|+.|||||++.++|+++..+| +++|+|+||.|++..+..|..... .+...+..+++.++.++++.+|+
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~----~~~i~~~p~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~ 73 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARH----GATVRYRPILLGGVFKATGNVPPA---NRPPAKGRYRLRDLERWARRYGI 73 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHh----CCeeEEeeeeHHHHHHHhCCCCCc---ccccHHHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999988755 589999999987753222211100 00012567888999999999999
Q ss_pred ccccCCC-CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccchh
Q 027910 96 EYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLN 172 (217)
Q Consensus 96 ~~~~~~~-~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~ 172 (217)
+|+++.. +.+|..+++++.+|+.+| ++..+++++||+++|.+|+++++.++|.+++.++|+|.+++ .++++++++.
T Consensus 74 ~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~ 152 (192)
T cd03022 74 PLRFPPRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAA 152 (192)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCCHHHHHH
Confidence 9998754 569999999999999888 34999999999999999999999999999999999999988 8899999999
Q ss_pred HHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910 173 EVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAF 212 (217)
Q Consensus 173 ~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i 212 (217)
+.++.+.+.+.||+|||||+|||+ .+.|.++.+.++..|
T Consensus 153 l~~~~~~a~~~gi~gvPtfvv~g~-~~~G~~~l~~~~~~l 191 (192)
T cd03022 153 LRANTEEAIARGVFGVPTFVVDGE-MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHHHHcCCCcCCeEEECCe-eecccccHHHHHHHh
Confidence 999999999999999999999998 679999999988776
No 5
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=100.00 E-value=1.6e-35 Score=234.69 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=157.7
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcC
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLG 94 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 94 (217)
+|++|||+.|||||++.++|+++++. .+++|+||||.|++..+..|...+.. ...|.++++.++.++++.+|
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~----~~v~i~~~P~~L~~~~~~~g~~~~~~----~~~k~~~~~~~~~~~a~~~G 73 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTA----WNVDITYVPVFLGGIMKDSGNKPPIM----LPNKAKYMAKDRKRSAEFFG 73 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHH----hCCeEEEEeeehhHHHhccCCCCccc----CchHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998863 56999999999988765555432211 12378999999999999999
Q ss_pred CccccCCC----CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHH----HHHHHHcCCCcccc--cc
Q 027910 95 LEYNMSGL----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFL----VECARKVGVEGAAE--FL 164 (217)
Q Consensus 95 ~~~~~~~~----~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L----~~ia~~~Gld~~~~--~l 164 (217)
++|+++.. ++||..+||++.+|+.+|.+...++.+++|+++|.+|.++++..++ .+++.++|||.+.. .+
T Consensus 74 l~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~~~~l 153 (209)
T cd03021 74 VPIRQPKDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKLL 153 (209)
T ss_pred CCCCCCCCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccHHHHH
Confidence 99998763 4899999999999988776323679999999999999988855544 79999999997665 33
Q ss_pred ---cCcccchhHHHHHHHHHhCCCCeecEEEEC---Ce-eeecCCCCHHHHHHHH
Q 027910 165 ---DDPNSGLNEVHEELKKYSANISGVPHFVLN---GK-HELSGGQPPEVYLRAF 212 (217)
Q Consensus 165 ---~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~---g~-~~~~G~~~~~~l~~~i 212 (217)
.++++++.+.++++.|.+.||+|||||+|+ |+ ..++|.+..+.++..|
T Consensus 154 ~~~~~~~~~~~l~~~~~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 154 KAASTPEVKNRLKENTDEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHccCHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 578889999999999999999999999995 31 4789999988887765
No 6
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6e-33 Score=205.86 Aligned_cols=196 Identities=18% Similarity=0.253 Sum_probs=168.9
Q ss_pred ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910 8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT 87 (217)
Q Consensus 8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
++.+.+-+|++||||.|||+|++.++++.+.++ ++..+.|||+.++.+....|...+- . ..+.+-.|.+.++.
T Consensus 2 ~~~~~~ktIef~fdf~SP~ayL~~~~~~~laq~----~ga~v~~rP~llg~vfk~tG~~~Pl-~--~~~~~~dY~~~d~~ 74 (203)
T COG3917 2 PPEGMNKTIEFYFDFSSPYAYLAWPRLPALAQA----YGAAVALRPILLGGVFKATGNGVPL-I--KTPQPGDYITLDLK 74 (203)
T ss_pred CCCCCCceeEEEEecCCchHHhhhhhhHHHHHH----cCCceEEEeeeeceeEeecCCCCcc-c--ccCCCCceehHHHH
Confidence 456778899999999999999999999999885 4689999999999888776633211 1 11223568999999
Q ss_pred HHHHhcCCccccCC-CCCCcHHHHHHHHHHhh-cCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--c
Q 027910 88 EVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQ-QGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--F 163 (217)
Q Consensus 88 ~~a~~~g~~~~~~~-~~~~s~~a~~~~~~a~~-~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~ 163 (217)
|.++++|+++.++. +++|+..+.|++.++.. -+. +.+|.++++++.|+++.++.+++++..++.++|||.+++ .
T Consensus 75 R~akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g~~--a~~~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A~ 152 (203)
T COG3917 75 REAKRHGLPLRFPRHFPPNTLGAARAMIALAMGGGL--AEQFAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLAL 152 (203)
T ss_pred HHHHHcCCccccCCCCCCchHHHHHHHHHHHhccch--HHHHHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHhh
Confidence 99999999998876 46899999999998533 344 999999999999999999999999999999999999998 7
Q ss_pred ccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 164 LDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 164 l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
++|+++++++..++.++.+.|++|+||||++++ .+.|.+....++..+.
T Consensus 153 ~gd~eik~~l~a~~~~a~srGvfGaPtfivg~q-~fwGqDRL~~lea~L~ 201 (203)
T COG3917 153 LGDDEIKARLKANTAEAVSRGVFGAPTFIVGDQ-LFWGQDRLYQLEAELR 201 (203)
T ss_pred cCCHHHHHHHHhhHHHHHhcCccCCCeEEECCe-eeechhHHHHHHHHHh
Confidence 889999999999999999999999999999988 7899988888887764
No 7
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.97 E-value=2.9e-30 Score=201.81 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=140.8
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHH-h
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-G 92 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~-~ 92 (217)
++|++|+||.|||||++.++|+++.++|+ .+++|+|+++.|.+.....+.. +..+...+..+.+. .
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~--~~~~v~~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 67 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYG--GGIEVELHLGGLLPGNNARQIT-----------KQWRIYVHWHKARIAL 67 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhC--CCceEEEEeccccCCCCCCCcc-----------hHHHHHHhHHHHHHHh
Confidence 57999999999999999999999999874 3699999988876543211111 12223444555566 8
Q ss_pred cCCccccCCC-----CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910 93 LGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD 165 (217)
Q Consensus 93 ~g~~~~~~~~-----~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~ 165 (217)
+|+++..+.. +.+|..+++++.+|+.+|+++..+|+++||+++|.+|+++++.++|.++++++|+|.+.+ .++
T Consensus 68 ~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~ 147 (193)
T cd03025 68 TGQPFGEDYLELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQ 147 (193)
T ss_pred cCCccCchhHhcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHc
Confidence 8999887532 347999999999999888777999999999999999999999999999999999999988 889
Q ss_pred CcccchhHHHHHHHHHhCCCCeecEEEECC
Q 027910 166 DPNSGLNEVHEELKKYSANISGVPHFVLNG 195 (217)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g 195 (217)
|+++++.+.++.+.+.++||+|||||+|++
T Consensus 148 s~~~~~~l~~~~~~a~~~gv~g~Ptfvv~~ 177 (193)
T cd03025 148 SDEAKQAIQEDQKLARELGINGFPTLVLED 177 (193)
T ss_pred ChHHHHHHHHHHHHHHHcCCCccCEEEEEe
Confidence 999999999999999999999999999963
No 8
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-26 Score=172.79 Aligned_cols=188 Identities=17% Similarity=0.244 Sum_probs=146.7
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhc
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGL 93 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 93 (217)
++|+|.|||.|.|||.+.|.+.++.+ ..+++|++++--+.... +.+... ....+.+.+.+++++.+
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~----~~gl~~~L~~GGl~aG~---r~pl~~-------~~r~~i~~hd~rIa~lT 67 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSA----QPGLEVVLHGGGLRAGN---RRPLDP-------AFRAYILPHDQRIAQLT 67 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHh----cCCceEEEecCCccCCC---CCCCCh-------HHHHHhhhhHHHHHHHh
Confidence 68999999999999999999988865 33789998886654321 111111 13466888899999999
Q ss_pred CCccccC---------CCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--
Q 027910 94 GLEYNMS---------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE-- 162 (217)
Q Consensus 94 g~~~~~~---------~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~-- 162 (217)
|.||... ++..+|.++++++.+|+..+.+....++.+|++++|++|+||.+.++|.+++.+.||+.+.|
T Consensus 68 GqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl~~laa~~GL~~~~f~~ 147 (212)
T COG3531 68 GQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVLAELAAAIGLAAEEFDN 147 (212)
T ss_pred CCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHHHHHHHHcCCCHHHHHH
Confidence 9999721 24589999999999999877665689999999999999999999999999999999999998
Q ss_pred ccc-CcccchhHHHH-HHHHHhCCCCeecEEEE--CCeee-e-cC--CCCHHHHHHHHHHH
Q 027910 163 FLD-DPNSGLNEVHE-ELKKYSANISGVPHFVL--NGKHE-L-SG--GQPPEVYLRAFQVA 215 (217)
Q Consensus 163 ~l~-~~~~~~~~~~~-~~~a~~~gv~g~Pt~vv--~g~~~-~-~G--~~~~~~l~~~i~~~ 215 (217)
..+ +.+......++ ....++.|+.|+|||++ ||+.. + .| ..+++.|...|.+.
T Consensus 148 ~f~~s~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 148 AFDQSGAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 444 44444444444 66789999999999999 67743 3 45 45678887777653
No 9
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.94 E-value=9.1e-26 Score=174.02 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=122.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF 90 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 90 (217)
..+++|.+|+||.||||+.+++.+.+++++++. ++.++++|+.+....
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~------------------------------ 61 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVVFGGGE------------------------------ 61 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCcccccc------------------------------
Confidence 789999999999999999999999999998753 688888888653310
Q ss_pred HhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcc
Q 027910 91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPN 168 (217)
Q Consensus 91 ~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~ 168 (217)
+..+.++..++..+|. .++++.++|+++|.++.++.+.+.|.+++.++|++.++| .+++++
T Consensus 62 ---------------~~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~ 124 (178)
T cd03019 62 ---------------GEPLARAFYAAEALGL--EDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFS 124 (178)
T ss_pred ---------------chHHHHHHHHHHHcCc--HhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHH
Confidence 1234456666666676 889999999999999999998999999999999999998 888988
Q ss_pred cchhHHHHHHHHHhCCCCeecEEEECCeeeecCC
Q 027910 169 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGG 202 (217)
Q Consensus 169 ~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~ 202 (217)
+.+.+.++.+.+.+.||+|||||+|||++.+.|.
T Consensus 125 ~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 125 VKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEECCEEEEChh
Confidence 9899999999999999999999999999766543
No 10
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=99.94 E-value=9.9e-27 Score=179.25 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=108.5
Q ss_pred EEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCCc
Q 027910 17 DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLE 96 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 96 (217)
.+|+||+|+|||..++.++++..+|+. .+++++.|..+-+.... .+ . ..+++
T Consensus 1 y~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~~~~~~---~~----~-------------------~~~~~ 52 (176)
T PF13743_consen 1 YLFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLMPDIND---FM----P-------------------RMPIN 52 (176)
T ss_dssp -EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS-S--S---B-------------------------H----
T ss_pred CeeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccchHHHHH---HH----H-------------------hcCCC
Confidence 379999999999999999999999875 68888888775443211 00 0 01111
Q ss_pred cc--cCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCcccchh
Q 027910 97 YN--MSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDPNSGLN 172 (217)
Q Consensus 97 ~~--~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~~~~~~ 172 (217)
.+ .+....+|+.++++++||+.||+.++.+|+.+|+++++.+++++++.++|.++|+++|||.+.| .+.|+.+++.
T Consensus 53 ~~~~~~~~~~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~ 132 (176)
T PF13743_consen 53 GDFWRNEPRSSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQA 132 (176)
T ss_dssp TTHHHS--BS--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHH
T ss_pred HHHhcCCCCCCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHH
Confidence 11 1123467899999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhCCCCeecEEEECC------eeeecCCCCHHHHHH
Q 027910 173 EVHEELKKYSANISGVPHFVLNG------KHELSGGQPPEVYLR 210 (217)
Q Consensus 173 ~~~~~~~a~~~gv~g~Pt~vv~g------~~~~~G~~~~~~l~~ 210 (217)
+.+|.+.|+++||.++||+||.+ ..++.|..+++.+++
T Consensus 133 ~~~D~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~~ 176 (176)
T PF13743_consen 133 FQEDQQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYEQ 176 (176)
T ss_dssp HHHHHHHHHHTT-SSSSEEEEE----------------------
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecccccccccccccccccccCC
Confidence 99999999999999999999932 347799999988764
No 11
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.94 E-value=2.2e-25 Score=167.55 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=124.5
Q ss_pred ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910 8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT 87 (217)
Q Consensus 8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
|+..++++|++|+||.||||+.+++.+.+++.+++ +++++++++++...
T Consensus 1 G~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~p~~~~---------------------------- 49 (154)
T cd03023 1 GNPNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEFPILGE---------------------------- 49 (154)
T ss_pred CCCCCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeCCccCc----------------------------
Confidence 56778999999999999999999999999887654 48899998875321
Q ss_pred HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910 88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD 165 (217)
Q Consensus 88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~ 165 (217)
++..+++++.++...+++.++++++++|.. + +..+.+.|.+++.+.|++.+++ +++
T Consensus 50 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~----~-~~~~~~~l~~~a~~~gl~~~~~~~~~~ 107 (154)
T cd03023 50 -----------------SSVLAARVALAVWKNGPGKYLEFHNALMAT----R-GRLNEESLLRIAKKAGLDEAKLKKDMD 107 (154)
T ss_pred -----------------chHHHHHHHHHHHHhChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 122234455555544555688999888863 2 3457888999999999999988 888
Q ss_pred CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
++++.+.+.++.+.+.+.||+|||||+|||+ .+.|..+++.|.++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~-~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 108 DPEIEATIDKNRQLARALGITGTPAFIIGDT-VIPGAVPADTLKEAID 154 (154)
T ss_pred ChHHHHHHHHHHHHHHHcCCCcCCeEEECCE-EecCCCCHHHHHHHhC
Confidence 8889999999999999999999999999998 7899999999998874
No 12
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.90 E-value=2.8e-22 Score=158.60 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=116.3
Q ss_pred CcceEEEEEecccCchhhhhHHHH---HHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT 87 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
..+.+|.+||||.||||+.+++.+ ..+.+.+++ ++.++.+|+.+.+. .+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~~f~~~---~~----------------------- 87 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHVEFLGP---LG----------------------- 87 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecccccch---hh-----------------------
Confidence 346789999999999999999866 666676654 56777766654220 00
Q ss_pred HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--ccc
Q 027910 88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLD 165 (217)
Q Consensus 88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~ 165 (217)
..+.++..+|+..+. ...++.++|++++. ++++.+.+.|.+++.+.|+|.+++ +++
T Consensus 88 -------------------~~~~~a~~~a~~~~~--~~k~~~~lf~~i~~-~~~~~~~~~L~~~a~~~Gld~~~f~~~l~ 145 (207)
T PRK10954 88 -------------------KELTQAWAVAMALGV--EDKVTPPLFEGVQK-TQTIQSAADIRDVFIKAGVKGEDYDAAWN 145 (207)
T ss_pred -------------------HHHHHHHHHHHHhCc--HHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 001123333344454 56688889998865 567889999999999999999998 899
Q ss_pred CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC--------CHHHHHHHHHHH
Q 027910 166 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ--------PPEVYLRAFQVA 215 (217)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~--------~~~~l~~~i~~~ 215 (217)
++++.+.+.++.+.+.+.||+|||||+|||+|.+.... +.+.+...|+-+
T Consensus 146 s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~L 203 (207)
T PRK10954 146 SFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKFL 203 (207)
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998774222 457777776544
No 13
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=99.87 E-value=1.4e-21 Score=148.31 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=118.1
Q ss_pred cccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHH
Q 027910 3 QSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGI 82 (217)
Q Consensus 3 ~~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 82 (217)
.++..|.+..+++|++|+||.||+|+.+++.+.+++++|-+...+.++++|+++... .
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~---------~------------- 60 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH---------S------------- 60 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH---------H-------------
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch---------h-------------
Confidence 456789999999999999999999999999999999998545689999999975321 0
Q ss_pred HHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 83 IARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 83 ~~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
+..+..++.++..++ ..++.+.+.+|+.. .+.... .++++..|.+.+.+
T Consensus 61 -----------------------~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~---~~i~~~~~~~~~~~ 109 (162)
T PF13462_consen 61 -----------------------SLRAAMAAECVADQG-KYFWFFHELLFSQQ----ENFENK---KDIAANAGGSNEQF 109 (162)
T ss_dssp -----------------------HHHHHHHHHHHHHHT-HHHHHHHHHHHHHC----HSTSSH---HHHHHHTTSHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHh-HHHHHHHHHHHHhh----hccchh---HHHHHHcCCCHHHH
Confidence 122344555555556 44555555566542 222223 34555566666767
Q ss_pred --cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 163 --FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 163 --~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
++.++++...+..+.+.+.+.||.|||||+|||++ +.|..+++.|..+|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~-~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 110 NKCLNSDEIKAQLEADSQLARQLGITGTPTFFINGKY-VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEETTCE-EETTTSHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHcCCccccEEEECCEE-eCCCCCHHHHHHHHcC
Confidence 78888899999999999999999999999999995 7889999999999985
No 14
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-15 Score=123.65 Aligned_cols=166 Identities=15% Similarity=0.107 Sum_probs=111.8
Q ss_pred ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHH
Q 027910 4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGII 83 (217)
Q Consensus 4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (217)
.+..|....++++.+|+|+.||||-...+.+++.. .....++++|++|.+.+... .+
T Consensus 76 ~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~---i~~~~~~~~~~~~~f~~~~~-------~~------------- 132 (244)
T COG1651 76 DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKY---IDDGKVRLVLREFPFLDPAC-------PY------------- 132 (244)
T ss_pred cccccCCCCCceEEEEecCcCccHHHHHHHHHHHh---hhcCCCceEEEEeecCCCCc-------HH-------------
Confidence 34467777799999999999999977667666643 33456799999988644210 11
Q ss_pred HHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc-
Q 027910 84 ARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE- 162 (217)
Q Consensus 84 ~~~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~- 162 (217)
+..+++++.++..++...++.|++++|+..-..+..-.........+...+++ ..+
T Consensus 133 ----------------------~~~a~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 189 (244)
T COG1651 133 ----------------------CRRAAQAARCAADQGIVRYWAFHDALFGSQAEAWAASILCAKDLAKADLAALD-EGKK 189 (244)
T ss_pred ----------------------HHHHHHHHHHhccccchhHHHHHHHHhhccccchhhhhhhhhhhhhhhHHHHH-hhhh
Confidence 12244555555555534599999999986532222211111111122222222 222
Q ss_pred -cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 163 -FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 163 -~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
+++.....+.+.++.+.+.+.|+.|||||+|+|+ .+.|..+.+.|..+|+.++
T Consensus 190 ~~~~~~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~-~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 190 AKLNQKACDALIAKNYKLAQQLGVNGTPTFIVNGK-LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred hccChHHHHHHHHHHHHHHHhcCCCcCCeEEECCe-eecCCCCHHHHHHHHHHhh
Confidence 4444456788999999999999999999999998 7899999999999998764
No 15
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=99.62 E-value=7.3e-15 Score=101.30 Aligned_cols=92 Identities=28% Similarity=0.491 Sum_probs=71.6
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHHHhcCC
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGL 95 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 95 (217)
|++|+|+.|||||.+++.+++++..+ ..+++++|+|+.+.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------------------- 44 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD--DGGVRVVYRPFPLLGGMP---------------------------------- 44 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc--CCcEEEEEeccccCCCCC----------------------------------
Confidence 57999999999999999999987443 347999999998866321
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccCcccchhHHH
Q 027910 96 EYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVH 175 (217)
Q Consensus 96 ~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~ 175 (217)
+.+..+++++.++..++. ..++.+++ +
T Consensus 45 --------~~~~~~~~~~~~~~~~~~--~~~~~~~l-------------------------------------------~ 71 (98)
T cd02972 45 --------PNSLAAARAALAAAAQGK--FEALHEAL-------------------------------------------A 71 (98)
T ss_pred --------cchHHHHHHHHHHHHcCc--HHHHHHHH-------------------------------------------H
Confidence 123445566666665544 77777777 7
Q ss_pred HHHHHHhCCCCeecEEEECCe
Q 027910 176 EELKKYSANISGVPHFVLNGK 196 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv~g~ 196 (217)
+.+.+.+.|++||||++++|+
T Consensus 72 ~~~~~~~~g~~g~Pt~v~~~~ 92 (98)
T cd02972 72 DTALARALGVTGTPTFVVNGE 92 (98)
T ss_pred HHHHHHHcCCCCCCEEEECCE
Confidence 888899999999999999983
No 16
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.62 E-value=8.5e-15 Score=118.87 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=89.1
Q ss_pred CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910 6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR 85 (217)
Q Consensus 6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (217)
.-|+.+.+.+|++|+||.||||..++..+.++++ ..+++++|.|+++-. +
T Consensus 111 ~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~----~g~V~v~~ip~~~l~--~------------------------ 160 (251)
T PRK11657 111 LDGKADAPRIVYVFADPNCPYCKQFWQQARPWVD----SGKVQLRHILVGIIK--P------------------------ 160 (251)
T ss_pred cccCCCCCeEEEEEECCCChhHHHHHHHHHHHhh----cCceEEEEEeccccC--c------------------------
Confidence 3466788999999999999999999999887765 345888888765311 0
Q ss_pred HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccccccc
Q 027910 86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLD 165 (217)
Q Consensus 86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~ 165 (217)
+|.....++.+++ ++.+.+..+...+.. .|+.+. ...
T Consensus 161 -------------------~S~~~a~ailca~--d~~~a~~~~~~~~~~--------------------~~~~~~--~~~ 197 (251)
T PRK11657 161 -------------------DSPGKAAAILAAK--DPAKALQEYEASGGK--------------------LGLKPP--ASI 197 (251)
T ss_pred -------------------chHHHHHHHHhcc--CHHHHHHHHHHhhhc--------------------cCCCcc--ccC
Confidence 1111122333332 232233333332210 222221 122
Q ss_pred CcccchhHHHHHHHHHhCCCCeecEEEE-C--Cee-eecCCCCHHHHHHHHH
Q 027910 166 DPNSGLNEVHEELKKYSANISGVPHFVL-N--GKH-ELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv-~--g~~-~~~G~~~~~~l~~~i~ 213 (217)
+++..+.+.++.+.+.++|++|||+||+ | |+. .+.|+.+.+.|.+.|.
T Consensus 198 ~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 198 PAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 4456778999999999999999999999 4 543 5789999999998875
No 17
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.55 E-value=1.9e-13 Score=109.76 Aligned_cols=128 Identities=17% Similarity=0.262 Sum_probs=84.2
Q ss_pred ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHH
Q 027910 8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT 87 (217)
Q Consensus 8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
++++.+.+|.+|+||.||||..+++.+.++.+ .+++|.|.+|++.+..+.
T Consensus 103 g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-----~~v~v~~~~~P~~g~~~~------------------------- 152 (232)
T PRK10877 103 KAPQEKHVITVFTDITCGYCHKLHEQMKDYNA-----LGITVRYLAFPRQGLDSQ------------------------- 152 (232)
T ss_pred cCCCCCEEEEEEECCCChHHHHHHHHHHHHhc-----CCeEEEEEeccCCCCCch-------------------------
Confidence 55678999999999999999999998877643 358888887776432110
Q ss_pred HHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccccccCc
Q 027910 88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDP 167 (217)
Q Consensus 88 ~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~ 167 (217)
+...++.+.++ .++ ...+.+++ .+..+.. .
T Consensus 153 ------------------a~~~a~~iwca--~d~--~~a~~~~~------~~~~~~~---------------~------- 182 (232)
T PRK10877 153 ------------------AEKDMKSIWCA--ADR--NKAFDDAM------KGKDVSP---------------A------- 182 (232)
T ss_pred ------------------HHHHHHHHhcC--CCH--HHHHHHHH------cCCCCCc---------------c-------
Confidence 00011111121 122 22232222 1222211 0
Q ss_pred ccchhHHHHHHHHHhCCCCeecEEEE-CCeeeecCCCCHHHHHHHHHHHh
Q 027910 168 NSGLNEVHEELKKYSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 168 ~~~~~~~~~~~~a~~~gv~g~Pt~vv-~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
.....+.++.+.++++||.|||||++ ||+ .+.|+.+.+.|++.|++..
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv~~~G~-~~~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIVLSNGT-LVPGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEEEcCCe-EeeCCCCHHHHHHHHHHcc
Confidence 12235788899999999999999999 777 7899999999999998653
No 18
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.42 E-value=2.9e-12 Score=100.54 Aligned_cols=126 Identities=15% Similarity=0.230 Sum_probs=79.7
Q ss_pred CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHH
Q 027910 6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR 85 (217)
Q Consensus 6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (217)
.-+....+.+|++|+|+.||||+.+++.+.+ . ..+++|.++++++... +
T Consensus 71 ~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~--~~~v~v~~~~~p~~~~-~------------------------ 119 (197)
T cd03020 71 VYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----N--ADGVTVRIFPVPILGL-P------------------------ 119 (197)
T ss_pred EEcCCCCCEEEEEEECCCCccHHHHHHHHhh----c--cCceEEEEEEcCcCCC-c------------------------
Confidence 3456678999999999999999999998875 1 3478999998876432 1
Q ss_pred HHHHHHhcCCccccCCCCCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCccccccc
Q 027910 86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLD 165 (217)
Q Consensus 86 ~~~~a~~~g~~~~~~~~~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~ 165 (217)
+|....+.+.++. ++ ...+ +.++. +.... ..
T Consensus 120 -------------------~s~~~a~~i~ca~--d~--~~a~-~~~~~-----~~~~~--------------~~------ 150 (197)
T cd03020 120 -------------------DSTAKAAAIWCAK--DR--AKAW-TDAMS-----GGKVP--------------PP------ 150 (197)
T ss_pred -------------------cHHHHHHHhhccc--CH--HHHH-HHHHh-----CCCCC--------------CC------
Confidence 0111122222221 11 2111 11111 21111 11
Q ss_pred CcccchhHHHHHHHHHhCCCCeecEEEEC-CeeeecCCCCHHHHHHHH
Q 027910 166 DPNSGLNEVHEELKKYSANISGVPHFVLN-GKHELSGGQPPEVYLRAF 212 (217)
Q Consensus 166 ~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~-g~~~~~G~~~~~~l~~~i 212 (217)
.+.....+.++.+.++++||.|||||+++ |+ .+.|+.+.+.|.+.|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii~~~G~-~~~G~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIVLADGR-VVPGAPPAAQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEEECCCe-EecCCCCHHHHHhhC
Confidence 11223457788899999999999999995 65 789999988887654
No 19
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.33 E-value=4e-06 Score=59.33 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHhCCCCeecEEEE-C--Ce--eeecCCCCHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL-N--GK--HELSGGQPPEVYLRAF 212 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv-~--g~--~~~~G~~~~~~l~~~i 212 (217)
+.++..||.||||+++ + |+ +.+.|+.+.++|.+.|
T Consensus 73 ~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 5788999999999988 3 55 3468999999998875
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.16 E-value=2.5e-05 Score=51.92 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=31.3
Q ss_pred HHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910 180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.|+.++||++++|+..+.|..+.+.+.+.|+++
T Consensus 46 ~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 46 AMEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred HHHcCCccCCEEEECCEEEEecCCCHHHHHHHHHhh
Confidence 456899999999999987788999999999998865
No 21
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.51 E-value=0.00029 Score=46.48 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC-CHHHHHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF 212 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~-~~~~l~~~i 212 (217)
..+.+++++.|.+.....+++ ..++.+.|+.++||+++||+..+.|.. +.+.+.+.|
T Consensus 18 ~~~~~~~~e~~~~~~~~~v~~----------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 18 KNVKKAVEELGIDAEFEKVTD----------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHcCCCeEEEEeCC----------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHHh
Confidence 566788888887644224442 223667999999999999986778864 447777665
No 22
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.19 E-value=0.00053 Score=45.15 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCeecEEEECCeeeecC-CCCHHHHHHHHH
Q 027910 175 HEELKKYSANISGVPHFVLNGKHELSG-GQPPEVYLRAFQ 213 (217)
Q Consensus 175 ~~~~~a~~~gv~g~Pt~vv~g~~~~~G-~~~~~~l~~~i~ 213 (217)
.+.+...+.|+.++|+++|||+..+.| ..+.+++.++|+
T Consensus 37 ~~~~~~~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 37 EDFEEIEKYGVMSVPALVINGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp TTHHHHHHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred cCHHHHHHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence 344555899999999999999977899 656788887774
No 23
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.18 E-value=0.011 Score=46.87 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=31.7
Q ss_pred HHHHHHhCCCCeecEEEECCeee-ecCCCCHHHHHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv~g~~~-~~G~~~~~~l~~~i~~~ 215 (217)
+...+.+.||.++||++|+++.. +.|..+.++|.+.|.++
T Consensus 175 ~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~~ 215 (215)
T TIGR02187 175 NPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILSA 215 (215)
T ss_pred CHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHhC
Confidence 34566789999999999975423 78999999999988753
No 24
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.11 E-value=0.014 Score=42.08 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.5
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~ 40 (217)
....|.+|+-..||||..+.|.|.++.++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~ 51 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ 51 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence 45578899999999999999999999874
No 25
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.80 E-value=0.0037 Score=45.68 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcC-CCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHHh
Q 027910 145 KEFLVECARKVG-VEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 145 ~~~L~~ia~~~G-ld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~~ 216 (217)
.-+|.+++++.+ -+. .+ .++ +.++...+.+.||.|+|||++ ||++ .+.|..+.++|.+.|+++.
T Consensus 55 avvleELa~e~~~~~v-~~akVD-------iD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 55 PVMIGELLREFPDYTW-QVAIAD-------LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred HHHHHHHHHHhcCCce-EEEEEE-------CCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 356667877764 211 12 222 234567789999999999988 7874 3679999999999998764
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.70 E-value=0.058 Score=40.97 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=28.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..+++|.+|+...||.|-...+.|.++.++|+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~ 55 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYG 55 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHh
Confidence 56788999999999999988889999988876
No 27
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.47 E-value=0.11 Score=40.04 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHhCCCCeec-EEEEC--Ce--eeecCCCCHHHHHHHHHHHh
Q 027910 180 KYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 180 a~~~gv~g~P-t~vv~--g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
+.+.|+.|+| ||+|+ |+ +...|..+.+.|+..|+.+.
T Consensus 135 ~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 135 GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred HHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 4467899999 66775 54 44578888898888887653
No 28
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.45 E-value=0.052 Score=41.04 Aligned_cols=35 Identities=14% Similarity=-0.059 Sum_probs=28.4
Q ss_pred cCCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.-..+.++.+|+...||.|-...+.+.++.++|.+
T Consensus 58 ~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~ 92 (173)
T PRK03147 58 DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE 92 (173)
T ss_pred HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc
Confidence 33456677788899999999989999999888864
No 29
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.45 E-value=0.078 Score=48.18 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAF 212 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i 212 (217)
.+.+.+.||.+||+++|||+....|..+.++++..|
T Consensus 519 ~~~~~~~~v~~vP~~~i~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHhCCceecCEEEECCEEEEeeCCCHHHHHHhh
Confidence 345668999999999999987778988999888765
No 30
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.43 E-value=0.0054 Score=41.71 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=25.5
Q ss_pred HHHHhCCCCeecEEEECCeeeecCCCCHHHHH
Q 027910 178 LKKYSANISGVPHFVLNGKHELSGGQPPEVYL 209 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~ 209 (217)
+.+.+.||.++|||++||+....|..+.++++
T Consensus 56 e~a~~~~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 56 DEVEERGIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred HHHHHcCCccCCEEEECCEEEEeCCCCHHHHh
Confidence 34568899999999999997778977766654
No 31
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.40 E-value=0.071 Score=47.98 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
..+.+.+.++.+||++++||+....|..+.++++..+.+
T Consensus 158 ~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 158 FQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred CHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 344567889999999999998777899999999888764
No 32
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.06 E-value=0.0096 Score=42.86 Aligned_cols=41 Identities=5% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910 176 EELKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~ 216 (217)
+...|.+.||.|+||+++ ||+ ..+.|..+.+.|.+.|+++-
T Consensus 76 ~~~La~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 76 DAKVAKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CHHHHHHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 456788999999999977 776 22579999999999998863
No 33
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.02 E-value=0.018 Score=39.14 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=32.7
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
-.+|++|.+|+++.||||-...+.+.++.+.++ ++++...
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~v 49 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMI 49 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEE
Confidence 467999999999999999999999999887654 3555443
No 34
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.01 E-value=0.23 Score=44.68 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=32.6
Q ss_pred HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~ 215 (217)
.+.+.+.++.+||+++|||+....|..+.+++.+.+...
T Consensus 160 ~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred HHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 445678899999999999987778999999998877643
No 35
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.019 Score=42.88 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHH
Q 027910 173 EVHEELKKYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 173 ~~~~~~~a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~ 215 (217)
.....+.|+..+|.||||||+ +|+ +.++|+-|++.|..+++=+
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 344556788999999999999 244 3468999999999988744
No 36
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=95.67 E-value=0.35 Score=35.97 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=33.1
Q ss_pred cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
++.+.-..++.|.+|+-..||.|-...+.|.++.++|++ .++.|.
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~-~~~~v~ 59 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP-SHFNVL 59 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh-CCeEEE
Confidence 333344456677778889999999999999999998874 345554
No 37
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.56 E-value=0.047 Score=34.62 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHhCCCCeecEEEECCeeeecCCCCHHHHHHHH
Q 027910 180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAF 212 (217)
Q Consensus 180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i 212 (217)
....|+.++|+++++|+ .+.|. +++.+.+.|
T Consensus 43 ~~~~~~~~vP~~~~~~~-~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 43 LKVLGQRGVPVIVIGHK-IIVGF-DPEKLDQLL 73 (74)
T ss_pred HHHhCCCcccEEEECCE-EEeeC-CHHHHHHHh
Confidence 34569999999999987 57886 667766655
No 38
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.48 E-value=0.27 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=24.7
Q ss_pred cCCcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910 9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA 39 (217)
Q Consensus 9 ~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~ 39 (217)
....+..|.+|+..-||.|....+.+.++.+
T Consensus 17 ~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~ 47 (123)
T cd03011 17 SLSGKPVLVYFWATWCPVCRFTSPTVNQLAA 47 (123)
T ss_pred HhCCCEEEEEEECCcChhhhhhChHHHHHHh
Confidence 3344778888888999999999998887765
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.40 E-value=0.69 Score=35.19 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHhCCCCeec-EEEEC--Ce--eeecCCCCHHHHHHHHHHHh
Q 027910 180 KYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 180 a~~~gv~g~P-t~vv~--g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
+...|+.|+| +|+|+ |+ +...|..+.++|++.|+++.
T Consensus 130 ~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 130 GLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred HHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 4467889999 66775 65 34578889999999988764
No 40
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.36 E-value=0.06 Score=36.41 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=34.7
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
.++++.+|+..-||.|-...+.|.++.++|++..++++.+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEe
Confidence 3688999999999999999999999999998544677776544
No 41
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.09 E-value=0.019 Score=36.37 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred HHHhCCCCeecEEEECCeeeecC
Q 027910 179 KKYSANISGVPHFVLNGKHELSG 201 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv~g~~~~~G 201 (217)
.+.+.|+.++||++++|+....|
T Consensus 44 l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 44 LADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred HHHHcCCcccCEEEECCEEEEec
Confidence 35578999999999999855555
No 42
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.02 E-value=0.034 Score=36.42 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=24.7
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
|+|++|+ .-||.|..+.+.++++.++++
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcC
Confidence 4688888 999999999999999998764
No 43
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.031 Score=41.49 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHHh
Q 027910 173 EVHEELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 173 ~~~~~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
+.+....|.+.+|..+||+++ ||+ ..+.|+.+.+.|.+.|++..
T Consensus 101 tD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 101 TDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred cccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 444566788999999999988 776 24789999999999999764
No 44
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.53 Score=37.50 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=36.1
Q ss_pred cccCCcceEEEEEecccCchhhhhHH-HHHHHHHhcCCCCceeEEEeecc
Q 027910 7 SSAGKKLIRIDVSSDTVCPWCFVGKR-NLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 7 ~~~~~~~v~i~~y~D~~CP~cy~~~~-~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
+++...+|.|++|+.-+||+|-.+-. .|-++..... ...++++++||.
T Consensus 34 ~~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~-~~~idl~lvPfG 82 (220)
T KOG3160|consen 34 KGSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLL-PSILDLTLVPFG 82 (220)
T ss_pred ccccCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcc-cceeEEEEEccC
Confidence 35666699999999999999988775 4556665431 235888999986
No 45
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.85 E-value=1.2 Score=33.21 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=30.2
Q ss_pred CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
+.+.-..++.+..|+-.-||.|-...|.|.++.+++.+
T Consensus 19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~ 56 (146)
T cd03008 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTD 56 (146)
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHh
Confidence 33444568888889999999999999999988776654
No 46
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.77 E-value=1.5 Score=34.26 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.7
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..++.|..|+-.-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~-~g~~vv 76 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP-LGLEIL 76 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc-CceEEE
Confidence 346777788889999999889999999998874 345554
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.72 E-value=1.2 Score=40.26 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=31.1
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~ 51 (217)
..++.|..|+-.-||.|....+.|.++.+++.. .++.|..
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~ 94 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLIT 94 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEE
Confidence 456778888889999999999999999887752 2455543
No 48
>PRK10996 thioredoxin 2; Provisional
Probab=94.71 E-value=0.079 Score=39.01 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.+.||.|+||+++ +|+. .+.|..+.+.|++.|+++
T Consensus 97 ~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 97 ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 4577899999999988 6763 358999999999999875
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.71 E-value=0.083 Score=37.83 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHHHHhCCCCeecEEEE---C-Cee--eecCCCCHHHHHHHHHHHhC
Q 027910 177 ELKKYSANISGVPHFVL---N-GKH--ELSGGQPPEVYLRAFQVAAN 217 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv---~-g~~--~~~G~~~~~~l~~~i~~~~~ 217 (217)
...+.+.||.++||+++ + |+. .+.|+.+.+.|.+.|+.+.+
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 34566889999999877 3 442 45799999999999988753
No 50
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.71 E-value=0.067 Score=33.08 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCcccccccCc-ccchhHHHHHHHHHhCCCCeecEEEECCee
Q 027910 146 EFLVECARKVGVEGAAEFLDDP-NSGLNEVHEELKKYSANISGVPHFVLNGKH 197 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~-~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~ 197 (217)
....++.++.|++-+...+++. +.++.+.+-. |..++|+++|||++
T Consensus 13 ~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~------g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEVDVDEDEEAREELKELS------GVRTVPQVFIDGKF 59 (60)
T ss_dssp HHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH------SSSSSSEEEETTEE
T ss_pred HHHHHHHHHcCCeeeEcccccchhHHHHHHHHc------CCCccCEEEECCEE
Confidence 3456677888887665544443 2222222222 99999999999984
No 51
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=94.39 E-value=0.13 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.4
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHh
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~ 40 (217)
|+|.+|+-..||+|-.+.+.+.++.+.
T Consensus 1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 1 VNIEVFVSPTCPYCPDAVQAANRIAAL 27 (67)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 578999999999999999988887654
No 52
>PLN02412 probable glutathione peroxidase
Probab=94.37 E-value=1.6 Score=32.98 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=30.6
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..++.|..|+..-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~-~g~~vv 66 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE-QGFEIL 66 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh-CCcEEE
Confidence 347778888889999999988999999998874 345543
No 53
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=94.37 E-value=0.23 Score=35.27 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
...|..+||.-+|.+|||++|++=|..+...=+..+++
T Consensus 73 v~~Aw~lgi~k~PAVVfD~~~VVYG~tDV~~A~~~~~~ 110 (114)
T PF07511_consen 73 VVDAWSLGITKYPAVVFDDRYVVYGETDVARALARIEQ 110 (114)
T ss_pred HHHHHHhCccccCEEEEcCCeEEecccHHHHHHHHHHH
Confidence 34677899999999999999999999776655555554
No 54
>PTZ00062 glutaredoxin; Provisional
Probab=94.33 E-value=2.1 Score=33.80 Aligned_cols=31 Identities=3% Similarity=-0.270 Sum_probs=27.5
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
...|.+|+..-||-|-...+.+.++.++|+.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~ 48 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS 48 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC
Confidence 5678888899999999999999999998863
No 55
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.09 E-value=0.084 Score=35.20 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=28.4
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
|+|.+|+-+.||||..+.+.|.++..++ .++.+++..+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi 38 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDI 38 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEEC
Confidence 5799999999999999999888776432 2455555444
No 56
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.07 E-value=0.081 Score=37.26 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=29.1
Q ss_pred HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~ 214 (217)
..+.+.||.++||+++ +|+. .+.|..+.+.|.+.|++
T Consensus 70 ~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 70 RLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 4567889999999987 6663 24688889999888875
No 57
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=94.03 E-value=0.086 Score=37.34 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHhCCCCeecEEEEC------CeeeecCCCCHHHHHHHHHHHhC
Q 027910 178 LKKYSANISGVPHFVLN------GKHELSGGQPPEVYLRAFQVAAN 217 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv~------g~~~~~G~~~~~~l~~~i~~~~~ 217 (217)
..+.+.||.++||+++. |+..+.|..+-++|...|+.+.|
T Consensus 66 ~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 66 EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred HHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 56678999999999992 33357798888999999988754
No 58
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.87 E-value=0.24 Score=32.94 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=20.6
Q ss_pred HHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 177 ELKKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
.......++.++|+++|||+ .+.|..+...
T Consensus 48 l~~~~~~~~~~vP~ifi~g~-~igg~~~~~~ 77 (85)
T PRK11200 48 LEKTVGKPVETVPQIFVDQK-HIGGCTDFEA 77 (85)
T ss_pred HHHHHCCCCCcCCEEEECCE-EEcCHHHHHH
Confidence 44444456789999999999 5677744433
No 59
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.82 E-value=0.33 Score=31.17 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR 210 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~ 210 (217)
...+.+.++.|++-....++.+. .. .+.....|..++|+++++|+..+.|. .++.|.+
T Consensus 13 ~~ak~~L~~~~i~~~~~di~~~~---~~---~~~~~~~g~~~vP~v~~~g~~~~~G~-~~~~~~~ 70 (72)
T TIGR02194 13 KMTKKALEEHGIAFEEINIDEQP---EA---IDYVKAQGFRQVPVIVADGDLSWSGF-RPDKLKA 70 (72)
T ss_pred HHHHHHHHHCCCceEEEECCCCH---HH---HHHHHHcCCcccCEEEECCCcEEecc-CHHHHHh
Confidence 34555666778876554333221 11 22233468899999999886456676 4555443
No 60
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.82 E-value=0.14 Score=34.72 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910 146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
..+++++.+.|++-....+ .+++ +++.. ....|-..+|.++|||+ .+.|..+...|
T Consensus 27 ~~ak~~L~~~~i~y~~idv~~~~~----~~~~l--~~~~g~~tvP~vfi~g~-~iGG~~~l~~l 83 (90)
T cd03028 27 RKVVQILNQLGVDFGTFDILEDEE----VRQGL--KEYSNWPTFPQLYVNGE-LVGGCDIVKEM 83 (90)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCHH----HHHHH--HHHhCCCCCCEEEECCE-EEeCHHHHHHH
Confidence 4566777888887665522 2222 22221 22347788999999999 47777554443
No 61
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=93.72 E-value=0.13 Score=35.51 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~ 214 (217)
.+.+.+|.++|||++ +|+ ..+.|. ..+.+.+.|++
T Consensus 63 ~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 63 TLKRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred HHHHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhh
Confidence 457889999999988 565 245776 77888888875
No 62
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.67 E-value=0.16 Score=32.61 Aligned_cols=57 Identities=14% Similarity=0.023 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCC-eecEEEECCeeeecCCCCHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANIS-GVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~-g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
...++++.+.|++-....++.. ....+. .....|.. ++|+++|+|+ .+.|..+...|
T Consensus 14 ~~ak~~L~~~~i~~~~i~i~~~---~~~~~~--~~~~~~~~~~vP~v~i~g~-~igg~~~~~~~ 71 (75)
T cd03418 14 VRAKALLDKKGVDYEEIDVDGD---PALREE--MINRSGGRRTVPQIFIGDV-HIGGCDDLYAL 71 (75)
T ss_pred HHHHHHHHHCCCcEEEEECCCC---HHHHHH--HHHHhCCCCccCEEEECCE-EEeChHHHHHH
Confidence 4456667778887665433321 111111 11234555 8999999998 57777655444
No 63
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.61 E-value=0.16 Score=33.16 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL 209 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~ 209 (217)
...+.+.++.|++-....++... ...+.. ....|..++|+++|+|+ .+.|..+...+.
T Consensus 13 ~~a~~~L~~~~i~~~~~di~~~~---~~~~~~--~~~~g~~~vP~i~i~g~-~igg~~~~~~~~ 70 (79)
T TIGR02181 13 TRAKALLSSKGVTFTEIRVDGDP---ALRDEM--MQRSGRRTVPQIFIGDV-HVGGCDDLYALD 70 (79)
T ss_pred HHHHHHHHHcCCCcEEEEecCCH---HHHHHH--HHHhCCCCcCEEEECCE-EEcChHHHHHHH
Confidence 44566677788876555333221 122222 22357899999999998 577876555543
No 64
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=93.52 E-value=0.22 Score=33.79 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~ 214 (217)
.+.+.+|.++||+++ +|+. .+.|..+.+.|.+.|++
T Consensus 63 l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 63 LCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred hhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 466789999999988 5653 46899999999998875
No 65
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=93.51 E-value=2.3 Score=32.90 Aligned_cols=29 Identities=10% Similarity=0.035 Sum_probs=23.7
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIA 39 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~ 39 (217)
..+..|.+|+-.-||.|-...+.+.++.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~ 101 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIAR 101 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHH
Confidence 45677888889999999998888887655
No 66
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=93.51 E-value=0.19 Score=37.11 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=29.1
Q ss_pred HHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHHh
Q 027910 180 KYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 180 a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
+.+.||.|+||++| +|+ ..+.|..+.+.|.+.|+++.
T Consensus 69 ~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~ 110 (142)
T cd02950 69 IDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV 110 (142)
T ss_pred HHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 45689999999977 355 23579999999999998764
No 67
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.37 Score=31.89 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhC-CCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910 148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHELSGGQPPEVYLRA 211 (217)
Q Consensus 148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~-gv~g~Pt~vv~g~~~~~G~~~~~~l~~~ 211 (217)
.++++.+.|++-....+.+.+. .+......+. |...||.++|||+ .+.|..+.+.+...
T Consensus 17 ak~~L~~~g~~~~~i~~~~~~~----~~~~~~~~~~~g~~tvP~I~i~~~-~igg~~d~~~~~~~ 76 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDDEP----EEAREMVKRGKGQRTVPQIFIGGK-HVGGCDDLDALEAK 76 (80)
T ss_pred HHHHHHHcCCCcEEEEecCCcH----HHHHHHHHHhCCCCCcCEEEECCE-EEeCcccHHHHHhh
Confidence 3455667788766553333221 1111222333 8999999999998 56777677766543
No 68
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.43 E-value=0.3 Score=33.77 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910 147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
..+.+..+.|++.....++..+-...+++.. ....|...+|.++|+|+ .+.|..+...+
T Consensus 23 ~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l--~~~tg~~tvP~Vfi~g~-~iGG~ddl~~l 81 (99)
T TIGR02189 23 VVKRLLLTLGVNPAVHEIDKEPAGKDIENAL--SRLGCSPAVPAVFVGGK-LVGGLENVMAL 81 (99)
T ss_pred HHHHHHHHcCCCCEEEEcCCCccHHHHHHHH--HHhcCCCCcCeEEECCE-EEcCHHHHHHH
Confidence 3455677778876655444322122222222 23348889999999998 67888655444
No 69
>PHA03050 glutaredoxin; Provisional
Probab=93.42 E-value=0.31 Score=34.34 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCcccc---cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910 146 EFLVECARKVGVEGAAE---FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~---~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
....++..+.|+....+ .++...-...+++... ...|-..||+++|||+ .+.|..+...|
T Consensus 27 ~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~--~~tG~~tVP~IfI~g~-~iGG~ddl~~l 89 (108)
T PHA03050 27 RNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFE--QITGGRTVPRIFFGKT-SIGGYSDLLEI 89 (108)
T ss_pred HHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHH--HHcCCCCcCEEEECCE-EEeChHHHHHH
Confidence 34566777777743333 3333222222333332 2347789999999999 57787554443
No 70
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.34 E-value=0.63 Score=30.83 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
...+...++.|++-+...++.+. +..++....|..++|+++++|. .+.|. .++.|.+++-
T Consensus 15 ~~ak~~L~~~gI~~~~idi~~~~------~~~~~~~~~g~~~vPvv~i~~~-~~~Gf-~~~~l~~~~~ 74 (81)
T PRK10329 15 HATKRAMESRGFDFEMINVDRVP------EAAETLRAQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP 74 (81)
T ss_pred HHHHHHHHHCCCceEEEECCCCH------HHHHHHHHcCCCCcCEEEECCE-EEecC-CHHHHHHHHH
Confidence 34566667888876655333221 1122233458899999999987 57777 5666666553
No 71
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=93.30 E-value=0.26 Score=34.88 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.|..+||.-+|.+|||++|++=|..+...=...++
T Consensus 76 ~Aw~lGi~k~PAVV~D~~~VVYG~~DV~~A~~~~~ 110 (113)
T TIGR03757 76 DAWQLGVTKIPAVVVDRRYVVYGETDVARALALIQ 110 (113)
T ss_pred HHHHcCCccCCEEEEcCCeEEecCccHHHHHHHHH
Confidence 56789999999999999999999876655444443
No 72
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=93.09 E-value=0.61 Score=32.20 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=24.3
Q ss_pred HHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 212 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i 212 (217)
...+.+.+|.|+|||++ +|+. .+.|..+ +.|.+.+
T Consensus 61 ~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~-~~l~~~~ 99 (103)
T cd02985 61 MELCRREKIIEVPHFLFYKDGEKIHEEEGIGP-DELIGDV 99 (103)
T ss_pred HHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCH-HHHHHHH
Confidence 35677889999999988 6762 3578754 5555544
No 73
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=93.09 E-value=0.17 Score=34.45 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 212 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i 212 (217)
.+.+.|+.++||+++ +|+. .+.|..+.++|.+.|
T Consensus 59 l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 59 IAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence 355778999999988 5653 368999998887765
No 74
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.01 E-value=0.23 Score=34.19 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCccccccc-CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHH
Q 027910 146 EFLVECARKVGVEGAAEFLD-DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~-~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
..+.++..+.|++-..+.+. ++ .+++... ...|-..+|.++|||+ .+.|..+...+
T Consensus 31 ~~ak~lL~~~~i~~~~~di~~~~----~~~~~l~--~~tg~~tvP~vfi~g~-~iGG~ddl~~l 87 (97)
T TIGR00365 31 ARAVQILKACGVPFAYVNVLEDP----EIRQGIK--EYSNWPTIPQLYVKGE-FVGGCDIIMEM 87 (97)
T ss_pred HHHHHHHHHcCCCEEEEECCCCH----HHHHHHH--HHhCCCCCCEEEECCE-EEeChHHHHHH
Confidence 45677778888876655332 32 2222222 2346789999999999 57787555443
No 75
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=92.98 E-value=0.44 Score=31.13 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCCc--ccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC
Q 027910 146 EFLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP 204 (217)
Q Consensus 146 ~~L~~ia~~~Gld~--~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~ 204 (217)
..+..+..+.|++. ..+.++..+....+.+. .....|+.++|++++||+ .+.|...
T Consensus 13 ~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~--l~~~~g~~~vP~v~i~g~-~igg~~~ 70 (84)
T TIGR02180 13 KKAKEILAKLNVKPAYEVVELDQLSNGSEIQDY--LEEITGQRTVPNIFINGK-FIGGCSD 70 (84)
T ss_pred HHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHH--HHHHhCCCCCCeEEECCE-EEcCHHH
Confidence 34556677777762 22244433222222222 233568899999999998 5677643
No 76
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=92.82 E-value=0.2 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=26.9
Q ss_pred HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~ 213 (217)
.+.+.||.++||+++ +|+. .+.|..+.+.+...|+
T Consensus 58 l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 58 IAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred HHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 466789999999987 5653 3578888888887763
No 77
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=92.73 E-value=4.5 Score=32.67 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.1
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..++.|..|+-.-||.|-.-.+.|.++.++|.+ .++.|.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~-~Gv~VI 136 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT-QGFEIL 136 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc-CCcEEE
Confidence 346778888889999999999999999998874 355554
No 78
>PHA02278 thioredoxin-like protein
Probab=92.73 E-value=0.24 Score=34.54 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA 211 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~ 211 (217)
.+.+.+|.|+|||++ ||+. .+.|..+.+.+.+.
T Consensus 64 l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 64 AVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred HHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 567889999999988 6763 36798888777653
No 79
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=92.67 E-value=0.41 Score=30.04 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910 147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 211 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~ 211 (217)
.+..+..+.|++-....++.. ....++... ..++.++|+++++|+ .+.|.. .+.+.++
T Consensus 15 ~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~--~~~~~~vP~i~~~~~-~i~g~~-~~~l~~~ 72 (73)
T cd02976 15 ATKRFLDERGIPFEEVDVDED---PEALEELKK--LNGYRSVPVVVIGDE-HLSGFR-PDKLRAL 72 (73)
T ss_pred HHHHHHHHCCCCeEEEeCCCC---HHHHHHHHH--HcCCcccCEEEECCE-EEecCC-HHHHHhh
Confidence 345555666776554333221 112222221 237899999999987 678864 4455443
No 80
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.57 E-value=2.6 Score=41.53 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=30.6
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..++.|..|+-.-||.|....|.|.++.++|++ .++.|.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vv 457 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVV 457 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEE
Confidence 356777777778999999999999999998874 345543
No 81
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=92.50 E-value=0.24 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=28.3
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..++.+.+|+...||+|....+.+.++.+++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~ 43 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD 43 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999888765
No 82
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.49 E-value=0.19 Score=32.30 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE 206 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~ 206 (217)
.....++++.|++-....+.... ....+. ....|-.++|+++|||+ .|.|.....
T Consensus 15 ~ka~~~L~~~gi~~~~~di~~~~---~~~~el--~~~~g~~~vP~v~i~~~-~iGg~~~~~ 69 (73)
T cd03027 15 TAVRLFLREKGLPYVEINIDIFP---ERKAEL--EERTGSSVVPQIFFNEK-LVGGLTDLK 69 (73)
T ss_pred HHHHHHHHHCCCceEEEECCCCH---HHHHHH--HHHhCCCCcCEEEECCE-EEeCHHHHH
Confidence 45667777888876655333211 122222 22346688999999998 577764433
No 83
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=92.29 E-value=0.32 Score=33.56 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHhCCCCeecEEEE-C-Ce-eeecCCCCHHHHHHHHHHHh
Q 027910 179 KKYSANISGVPHFVL-N-GK-HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv-~-g~-~~~~G~~~~~~l~~~i~~~~ 216 (217)
.+.+.+|.++||+++ + |. +.+.|..+.+.|...+++.+
T Consensus 64 ~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~~l~~~~~~~~ 104 (104)
T cd03000 64 IASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRVA 104 (104)
T ss_pred HHhhcCCccccEEEEEcCCCceeecCCCCHHHHHHHHHhhC
Confidence 356789999999977 3 32 34678889999999888753
No 84
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=92.21 E-value=0.17 Score=35.83 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHH
Q 027910 145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYL 209 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~ 209 (217)
...|.+++++.+ +.-.+ .++.++ +.+.+.+.||.|+|||++ +|+. .+.|..+-++|.
T Consensus 48 ~P~leela~e~~-~~v~f~kVdid~-------~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 48 AVVLPELLKAFP-GRFRAAVVGRAD-------EQALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HhHHHHHHHHCC-CcEEEEEEECCC-------CHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 356777777753 11122 333322 236788999999999988 7763 357888887765
No 85
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=92.19 E-value=0.31 Score=33.01 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~ 215 (217)
...+.+.|+.++|++++ +|+ +.+.|..+.+.|...|++.
T Consensus 59 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 59 KDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 34457889999999976 233 3568998999998888763
No 86
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.12 E-value=0.51 Score=34.04 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC-HHHHHHHHH
Q 027910 151 CARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP-PEVYLRAFQ 213 (217)
Q Consensus 151 ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~-~~~l~~~i~ 213 (217)
.+++-|++..++ ...+|..=..-..-.+.-...|..+.|.++|||+....|..| .++|.+.+.
T Consensus 35 ~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 35 WLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp HHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT
T ss_pred HHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhC
Confidence 345568888888 444443211111122334567999999999999976777665 688877653
No 87
>PRK09381 trxA thioredoxin; Provisional
Probab=92.05 E-value=0.42 Score=33.14 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910 180 KYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 180 a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.++.++||+++ +|+. .+.|..+.+.+...|++.
T Consensus 68 ~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 68 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred HHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence 45789999999988 6763 357888999999988864
No 88
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=92.02 E-value=0.38 Score=32.39 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHHH
Q 027910 180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.|+.++||+++ +|+ ..+.|..+.+.+...|++.
T Consensus 61 ~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 61 AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 45789999999988 565 2457888889999988764
No 89
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.90 E-value=0.39 Score=34.34 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=34.7
Q ss_pred cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
++...-..++.|.+|+..-||.|-...+.|.++.++|.+ .++.+.
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi 60 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVI 60 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEE
Confidence 444444567888888899999999999999999998874 345554
No 90
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.89 E-value=0.49 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCC
Q 027910 148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP 204 (217)
Q Consensus 148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~ 204 (217)
.+++..+.|++-....++..... .......|...+|.++|||+ .+.|...
T Consensus 17 ak~~L~~~~i~~~~~~v~~~~~~------~~~~~~~g~~~vP~ifi~g~-~igg~~~ 66 (72)
T cd03029 17 AKAALQENGISYEEIPLGKDITG------RSLRAVTGAMTVPQVFIDGE-LIGGSDD 66 (72)
T ss_pred HHHHHHHcCCCcEEEECCCChhH------HHHHHHhCCCCcCeEEECCE-EEeCHHH
Confidence 45555667777554433332211 11123358899999999999 4666533
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=91.61 E-value=0.47 Score=33.39 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHhCCCCeecEEEE----CCe--eeecCCCCHHHHHHHHHHHh
Q 027910 177 ELKKYSANISGVPHFVL----NGK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv----~g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
.+.+...++.++|++++ +|+ ..+.|..++++|...|+++.
T Consensus 66 ~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 66 QRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred HHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 44577788999999977 344 34689999999999998764
No 92
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.58 E-value=0.31 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=24.4
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
+|++|+-+.||+|..+...|.+ .++.++++.+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~di~ 34 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLRE--------KGLPYVEINID 34 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHH--------CCCceEEEECC
Confidence 5789999999999997776653 35666666443
No 93
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.41 E-value=0.4 Score=31.46 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHH
Q 027910 147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE 206 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~ 206 (217)
..++++++.|++-+...++..+-. . ......|...+|.+++||+ .+.|.....
T Consensus 23 ~ak~~L~~~gi~y~~idi~~~~~~----~--~~~~~~g~~~vP~i~i~g~-~igG~~~l~ 75 (79)
T TIGR02190 23 KAKATLKEKGYDFEEIPLGNDARG----R--SLRAVTGATTVPQVFIGGK-LIGGSDELE 75 (79)
T ss_pred HHHHHHHHcCCCcEEEECCCChHH----H--HHHHHHCCCCcCeEEECCE-EEcCHHHHH
Confidence 445556677887665533332111 1 1223458899999999998 577874433
No 94
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=91.39 E-value=0.33 Score=33.37 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHhCCCCeecEEEE-C---Ce--eeecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL-N---GK--HELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv-~---g~--~~~~G~~~~~~l~~~i~ 213 (217)
.+.+.|+.++||++| + |+ ..+.|..+.+.|.+.|+
T Consensus 64 ~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 64 LLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 445679999999977 3 33 34579999999988763
No 95
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.05 E-value=0.45 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-..||+|..+...|++ .++.++++.+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEcccc
Confidence 678999999999998776642 35777777665
No 96
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=91.05 E-value=0.44 Score=34.97 Aligned_cols=42 Identities=26% Similarity=0.211 Sum_probs=30.5
Q ss_pred ccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 8 ~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
.+.|++..++++||-.||.|......|.+. +..-.+.|.++.
T Consensus 2 ~~~~~~p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q 43 (137)
T COG3011 2 LPQMKKPDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQ 43 (137)
T ss_pred CCCCCCCCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEecc
Confidence 356788899999999999999966655432 234456666664
No 97
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.89 E-value=0.55 Score=30.54 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.7
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
|+|.+ +...||+|..+...++++++++
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHT
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhc
Confidence 56777 6788999999999999988864
No 98
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.88 E-value=5.5 Score=31.63 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHHHhhcCCchHHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCccccccc---CcccchhH
Q 027910 104 GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLD---DPNSGLNE 173 (217)
Q Consensus 104 ~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~---~~~~~~~~ 173 (217)
|.+..+......++.+. ...++..+...+ |.++.+.-. ..+|..++.+.|+..-.+.++ .+.....+
T Consensus 94 P~~~~a~~~~~~~~~~~---~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~ 170 (215)
T PF13728_consen 94 PVSNFARQAYLRQREQK---RDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPR 170 (215)
T ss_pred CchHHHHHHHHHHHHHH---HHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCC
Confidence 44444444444433322 566677777663 455555433 477888999999976544333 22222222
Q ss_pred HHHHHHHHhCCCCeecEEEE---CC-ee-ee-cCCCCHHHHHHHH
Q 027910 174 VHEELKKYSANISGVPHFVL---NG-KH-EL-SGGQPPEVYLRAF 212 (217)
Q Consensus 174 ~~~~~~a~~~gv~g~Pt~vv---~g-~~-~~-~G~~~~~~l~~~i 212 (217)
. +...+..+||.-||++++ ++ ++ .| .|..+.++|.+.|
T Consensus 171 ~-~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 P-DPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred C-CHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 2 667788999999999987 23 43 33 6999999988765
No 99
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=90.86 E-value=0.34 Score=39.33 Aligned_cols=41 Identities=5% Similarity=-0.115 Sum_probs=32.8
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~ 59 (217)
.--|.+||.-.||+|....+.|+.+.++| ++.| .|+++++.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v--~~VS~DG~ 184 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSV--IPVSVDGV 184 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHh----CCeE--EEEecCCC
Confidence 36789999999999999999999988754 4655 47777653
No 100
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.82 E-value=0.39 Score=38.16 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=33.1
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~ 59 (217)
...-|.+|++..||+|....+.|+.+.++| ++.|. ++++++.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~--~vs~DG~ 161 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVI--PVSLDGR 161 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEE--EEecCCC
Confidence 456799999999999999999999888754 56664 5666543
No 101
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=90.75 E-value=0.35 Score=33.01 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.3
Q ss_pred HHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~ 213 (217)
.+.+.+|.++||+++ +|+ ..+.|..+.+.|...|+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 63 LSGRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIE 100 (101)
T ss_pred HHHHcCCcccCEEEEeCCCCEEEecCCCCHHHHHHHHh
Confidence 456889999999988 565 24578888888888775
No 102
>PRK10638 glutaredoxin 3; Provisional
Probab=90.73 E-value=0.61 Score=30.81 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
..+.+++++.|++-+...++... ...++ .....|...+|+++++|+ .+.|..+...
T Consensus 16 ~~a~~~L~~~gi~y~~~dv~~~~---~~~~~--l~~~~g~~~vP~i~~~g~-~igG~~~~~~ 71 (83)
T PRK10638 16 HRAKALLNSKGVSFQEIPIDGDA---AKREE--MIKRSGRTTVPQIFIDAQ-HIGGCDDLYA 71 (83)
T ss_pred HHHHHHHHHcCCCcEEEECCCCH---HHHHH--HHHHhCCCCcCEEEECCE-EEeCHHHHHH
Confidence 44566777788876554333211 12222 223457888999999998 5777754433
No 103
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=90.18 E-value=0.72 Score=32.05 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=31.3
Q ss_pred cCcccCC-cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 5 VSSSAGK-KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 5 ~~~~~~~-~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
++.+.-. .+..|.+|+..-||.|....+.+.++.+++.. ++.+.
T Consensus 13 ~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi 57 (114)
T cd02967 13 VRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVV 57 (114)
T ss_pred EEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEE
Confidence 3444433 56777778899999999999999988776643 34443
No 104
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.11 E-value=1.3 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.3
Q ss_pred CCCeecEEEECCeeeecCCCCHHHH
Q 027910 184 NISGVPHFVLNGKHELSGGQPPEVY 208 (217)
Q Consensus 184 gv~g~Pt~vv~g~~~~~G~~~~~~l 208 (217)
+..++|+++|||+ .+.|..+...+
T Consensus 54 ~~~tVP~ifi~g~-~igG~~dl~~~ 77 (86)
T TIGR02183 54 PVETVPQIFVDEK-HVGGCTDFEQL 77 (86)
T ss_pred CCCCcCeEEECCE-EecCHHHHHHH
Confidence 4589999999998 46777444333
No 105
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.07 E-value=0.45 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=23.3
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
+|.+|+-..||||..+...|.+ .++.++.+.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~--------~~i~~~~~~v 33 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQE--------NGISYEEIPL 33 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHH--------cCCCcEEEEC
Confidence 5889999999999998766642 3455555544
No 106
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=90.06 E-value=0.74 Score=32.33 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=29.4
Q ss_pred eEEEEEecccCchhhhhH-HHHHHHH--HhcCCCCceeEEEeecc
Q 027910 14 IRIDVSSDTVCPWCFVGK-RNLDKAI--ASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~-~~l~~~~--~~~~~~~~v~v~~~p~~ 55 (217)
|.|.+|+.-+||.|..+. ..|..++ .++.+ .++|++.||.
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~--~~~l~lvP~G 43 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSD--IMNLTLVPFG 43 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccc--eEEEEEEEEe
Confidence 679999999999998764 4566544 44443 5788888886
No 107
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.05 E-value=1.4 Score=28.64 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP 205 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~ 205 (217)
..+.++..+.+++-..+.++..+....++.. .....|..++|+++++|+ .+.|.+..
T Consensus 14 ~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~g~~~~P~v~~~g~-~igg~~~~ 70 (82)
T cd03419 14 KRAKSLLKELGVKPAVVELDQHEDGSEIQDY--LQELTGQRTVPNVFIGGK-FIGGCDDL 70 (82)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCChHHHHHH--HHHHhCCCCCCeEEECCE-EEcCHHHH
Confidence 4566777777775443333332222222222 223458899999999998 46666433
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.99 E-value=0.49 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=24.0
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
++|.+|+-..||+|..+...|.+ .++.++....
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi 33 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMES--------RGFDFEMINV 33 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHH--------CCCceEEEEC
Confidence 36889999999999997766642 3566665544
No 109
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=89.83 E-value=0.56 Score=37.09 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHhCCCCeecEEEE--CCee---eecCCCCHHHHHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv--~g~~---~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.+.+.||.++|||++ +|+. .+.|..+.+.|...|+.+
T Consensus 66 ~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 66 DKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred cHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence 446678899999999988 4543 357988888888887765
No 110
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=89.80 E-value=0.64 Score=33.71 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=34.5
Q ss_pred CcccCCcceEEEEEecccCch-hhhhHHHHHHHHHhcCCCC--ceeEEEe
Q 027910 6 SSSAGKKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQY--DFEIRWH 52 (217)
Q Consensus 6 ~~~~~~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~~--~v~v~~~ 52 (217)
+...-..+..|.+|+...||. |-...+.|.++.++|.... ++.+.+.
T Consensus 16 ~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~v 65 (142)
T cd02968 16 TLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFI 65 (142)
T ss_pred chHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEE
Confidence 333335678888889999998 9999999999998886432 3555543
No 111
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=89.72 E-value=0.39 Score=33.28 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=25.4
Q ss_pred HHHHhCCCCeecEEEE--CCe---eeecCCCCHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK---HELSGGQPPEVYLRA 211 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~---~~~~G~~~~~~l~~~ 211 (217)
..+.+.||.++||+++ +|+ ....|..+.+.|.+.
T Consensus 69 ~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 69 DIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred HHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhh
Confidence 4577889999999987 565 344688888877654
No 112
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=89.69 E-value=0.64 Score=30.22 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=24.4
Q ss_pred HHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHH
Q 027910 180 KYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAF 212 (217)
Q Consensus 180 a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i 212 (217)
+...|+.++|++++ +|+ ..+.|..+.+.|...|
T Consensus 56 ~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 56 AEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred HHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence 45678999999988 565 3457887778877765
No 113
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=89.67 E-value=0.75 Score=32.86 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHhCCCC--eecEEEE--CCe----eeecCC-CCHHHHHHHHHH
Q 027910 176 EELKKYSANIS--GVPHFVL--NGK----HELSGG-QPPEVYLRAFQV 214 (217)
Q Consensus 176 ~~~~a~~~gv~--g~Pt~vv--~g~----~~~~G~-~~~~~l~~~i~~ 214 (217)
+.+.+.+.||. |.||+.+ +|. ....|. +..+.|++.|.+
T Consensus 67 ~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 67 NMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred hHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 45688999999 9999966 563 235786 899999887764
No 114
>PHA02125 thioredoxin-like protein
Probab=89.64 E-value=0.73 Score=29.83 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHhCCCCeecEEEECCe--eeecCCCC-HHHHHHHH
Q 027910 178 LKKYSANISGVPHFVLNGK--HELSGGQP-PEVYLRAF 212 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv~g~--~~~~G~~~-~~~l~~~i 212 (217)
+.+.+.+|.++|||+ +|+ ..+.|..+ ..+|.+.|
T Consensus 37 ~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 37 ELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred HHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHh
Confidence 457889999999998 665 34678643 35555443
No 115
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=89.51 E-value=0.97 Score=32.58 Aligned_cols=49 Identities=24% Similarity=0.154 Sum_probs=36.9
Q ss_pred ccCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCC-CceeEEEe
Q 027910 4 SVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRWH 52 (217)
Q Consensus 4 ~~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~-~~v~v~~~ 52 (217)
.++...-..++.|..|+-.-||.|-...+.+.++.++++++ .+++|.+.
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V 58 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV 58 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 34444545688889999999999999999999988887643 24666544
No 116
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=89.33 E-value=0.93 Score=32.49 Aligned_cols=48 Identities=23% Similarity=0.143 Sum_probs=34.9
Q ss_pred cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCC-CceeEEEe
Q 027910 5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ-YDFEIRWH 52 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~-~~v~v~~~ 52 (217)
++.+.-..++.|.+|+-.-||.|-...+.+.++.+++... .+++|.+.
T Consensus 11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~i 59 (131)
T cd03009 11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFI 59 (131)
T ss_pred ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEE
Confidence 4444445577888888899999999999999888877643 24555543
No 117
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=89.24 E-value=0.95 Score=30.67 Aligned_cols=31 Identities=10% Similarity=-0.054 Sum_probs=26.7
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
+..+..|+.+-|++|....+.+.++.+.+.+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 49 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKG 49 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcC
Confidence 5677888889999999999999999887764
No 118
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=89.01 E-value=0.72 Score=33.71 Aligned_cols=47 Identities=21% Similarity=0.058 Sum_probs=32.5
Q ss_pred cCcccCCcceEEEEEecc-cCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 5 VSSSAGKKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
++.+.-..++.|..|+-. -||.|-...+.+.++.+.|+. .++.+...
T Consensus 21 ~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~-~~v~~v~v 68 (146)
T PF08534_consen 21 VSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD-KGVDVVGV 68 (146)
T ss_dssp EEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred ecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc-CceEEEEe
Confidence 344444445555555555 999999999999999877663 45777654
No 119
>PRK10824 glutaredoxin-4; Provisional
Probab=88.97 E-value=1 Score=32.12 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
....++....|++...+.+ ++++ ++.... ...|-.-+|.++|||+ .|.|.+....
T Consensus 34 ~~ak~lL~~~~i~~~~idi~~d~~----~~~~l~--~~sg~~TVPQIFI~G~-~IGG~ddl~~ 89 (115)
T PRK10824 34 AQAVQALSACGERFAYVDILQNPD----IRAELP--KYANWPTFPQLWVDGE-LVGGCDIVIE 89 (115)
T ss_pred HHHHHHHHHcCCCceEEEecCCHH----HHHHHH--HHhCCCCCCeEEECCE-EEcChHHHHH
Confidence 3445566667776655522 2332 333222 2347888999999999 5777754433
No 120
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.81 E-value=1 Score=31.77 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=24.6
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|..+...|. +.++.++++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~--------~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLD--------EHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHH--------HcCCceEEeccc
Confidence 56899999999999887664 236777777664
No 121
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=1.5 Score=30.70 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCH
Q 027910 147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP 205 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~ 205 (217)
.++++....|.++....++..+-...++.... .--|-..+|.++|+|+ .+.|..+.
T Consensus 29 ~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~--~~tg~~tvP~vFI~Gk-~iGG~~dl 84 (104)
T KOG1752|consen 29 RAKELLSDLGVNPKVVELDEDEDGSEIQKALK--KLTGQRTVPNVFIGGK-FIGGASDL 84 (104)
T ss_pred HHHHHHHhCCCCCEEEEccCCCCcHHHHHHHH--HhcCCCCCCEEEECCE-EEcCHHHH
Confidence 35666666777666554444333334444433 2356679999999999 45665433
No 122
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=88.71 E-value=1 Score=29.87 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=25.2
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..+.+|+...||+|-...+.+.++.+.+.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 45 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELK 45 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhc
Confidence 77888888999999999999998887663
No 123
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.66 E-value=0.8 Score=32.22 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=29.3
Q ss_pred CcceEEEEEecc-cCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910 11 KKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (217)
Q Consensus 11 ~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~~~~v~v~~ 51 (217)
..+..|.+|+.. -||.|....+.|.++.++|+. .++++..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~ 64 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIG 64 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeee
Confidence 445555555555 999999999999999988873 4566643
No 124
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=88.64 E-value=0.67 Score=30.34 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=20.6
Q ss_pred CcceEEEEEecccCchhhhhHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
..+.+|.+|+-..||||..+...|.
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~ 29 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLK 29 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHH
Confidence 3466789999999999999777664
No 125
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=88.51 E-value=1.7 Score=35.85 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCcccccccCcc---cchhHHHHHHHHHhCCCCeecEEEE-C--C-ee--eecCCCCHHHHHHHHHHH
Q 027910 145 KEFLVECARKVGVEGAAEFLDDPN---SGLNEVHEELKKYSANISGVPHFVL-N--G-KH--ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~~l~~~~---~~~~~~~~~~~a~~~gv~g~Pt~vv-~--g-~~--~~~G~~~~~~l~~~i~~~ 215 (217)
...|.+++++.|+..-.+.++... +.. +..+...+..+||.++||+++ + | +. ...|..+.++|.+.|..+
T Consensus 185 ~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~-~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 185 APILQAFEDRYGIEVLPVSVDGGPLPGFPN-ARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred hHHHHHHHHHcCcEEEEEeCCCCccccCCc-ccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 467888998888643222333211 111 123345678899999999977 2 3 22 235888999999988776
Q ss_pred h
Q 027910 216 A 216 (217)
Q Consensus 216 ~ 216 (217)
+
T Consensus 264 a 264 (271)
T TIGR02740 264 A 264 (271)
T ss_pred h
Confidence 5
No 126
>PRK09381 trxA thioredoxin; Provisional
Probab=88.46 E-value=0.95 Score=31.30 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=27.3
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
....|..|+-+.||.|....+.+.++.++|.+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~ 52 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG 52 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC
Confidence 44577888889999999999999999988764
No 127
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.43 E-value=1.3 Score=29.90 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=29.1
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
.+..|.+|+...||.|....+.+.++.+++.+ ++.+.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~ 53 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFA 53 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEE
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccc
Confidence 46667777778999999999999999998874 44443
No 128
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=88.14 E-value=1.5 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=30.3
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
.+..|.+|+...||.|....+.+.++.+++. ..++.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~ 56 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVV 56 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEE
Confidence 5778888889999999999999999988775 2345544
No 129
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=88.09 E-value=3.7 Score=26.00 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 148 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 148 L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
+..++.+.|++-....+++.. ...+.-.....|+.++|+++++|...+. .....++...|+
T Consensus 16 ~~~~L~~~~~~~~~idi~~~~----~~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~l~ 76 (77)
T TIGR02200 16 LMRTLDKLGAAYEWVDIEEDE----GAADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAKLQ 76 (77)
T ss_pred HHHHHHHcCCceEEEeCcCCH----hHHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHHhh
Confidence 445556667654433332211 1111212224589999999886542444 445566666554
No 130
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=88.08 E-value=0.73 Score=29.45 Aligned_cols=21 Identities=29% Similarity=0.812 Sum_probs=17.7
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
+|.+|+-..||||-.+...|.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~ 21 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLD 21 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHH
Confidence 378999999999999877665
No 131
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=88.00 E-value=0.77 Score=31.18 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=24.3
Q ss_pred HHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHH
Q 027910 179 KKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRA 211 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~ 211 (217)
.+.+.|+.++||+++ +|+ ..+.|....+.+.+.
T Consensus 67 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 67 LKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred HHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 456789999999977 455 345788887777654
No 132
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=87.73 E-value=1.7 Score=30.88 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCeecEEEE----CCee----eecCCCCHHHHHHHHHHHh
Q 027910 176 EELKKYSANISGVPHFVL----NGKH----ELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv----~g~~----~~~G~~~~~~l~~~i~~~~ 216 (217)
..+.+..+++.++|+++| +++. .+.|..++++|...|..+.
T Consensus 65 g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 65 GYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred HHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 477788999999999966 4443 4689999999999998764
No 133
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=87.70 E-value=1.6 Score=29.38 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=28.5
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..++.+..|++..|+.|....+.+.++.+.+..
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~ 44 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG 44 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc
Confidence 467889999999999999999999888777764
No 134
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=87.69 E-value=1.1 Score=30.55 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=27.3
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
++.+..|+.+-||.|....+.+.++.++|++
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~ 49 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDG 49 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcC
Confidence 6778888889999999999999999988763
No 135
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=87.60 E-value=0.9 Score=41.56 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHhCCCCeecEEEE---CCee----eecCCCCHHHHHHHHHHHhC
Q 027910 176 EELKKYSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVAAN 217 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv---~g~~----~~~G~~~~~~l~~~i~~~~~ 217 (217)
+.+.+.+.|+.|+||+++ +|+. .+.|..+.+.+.+.|+++.|
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~ 571 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP 571 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence 345667899999999987 3552 45799999999999999865
No 136
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.85 Score=35.87 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.+-+.||.+||+++++|+....+..++++++.+|+
T Consensus 51 ~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 51 LAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred HHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 34577999999999999976788889999998875
No 137
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=87.26 E-value=1 Score=30.24 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=22.5
Q ss_pred HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF 212 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i 212 (217)
..+.+.|+.++||+++ +|+. .+.|. ..+.|.+.|
T Consensus 59 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 59 EISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred HHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHHHHhh
Confidence 3456789999999987 5652 34576 455555544
No 138
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=87.07 E-value=0.95 Score=30.96 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=23.6
Q ss_pred HHHHhCCCCeecEEEE--CC-e--eeecCCCC-HHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NG-K--HELSGGQP-PEVYLRA 211 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~-~~~l~~~ 211 (217)
..+.+.||.++||+++ +| + ..+.|..+ .+.|...
T Consensus 64 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 64 SLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred HHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 3466789999999988 44 4 34568776 7776543
No 139
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=86.95 E-value=1.2 Score=29.83 Aligned_cols=33 Identities=6% Similarity=-0.176 Sum_probs=27.7
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
...+.+..|+-+-||.|....+.+.++.+.|.+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~ 43 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG 43 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC
Confidence 356778888889999999999999999887753
No 140
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=86.73 E-value=1.1 Score=30.91 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHhCCCCeecEEEE--CCe-------eeecCCCCHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK-------HELSGGQPPEVYLRAF 212 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~-------~~~~G~~~~~~l~~~i 212 (217)
..+.+.||.|+||+++ +|+ ..+.|..+.+.|.+.|
T Consensus 65 ~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 65 PLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 4456789999999988 332 2346888888877665
No 141
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=86.69 E-value=0.83 Score=29.24 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-..||+|..+...|.+ .++.++.+.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~ 32 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE--------HGIAFEEINID 32 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------CCCceEEEECC
Confidence 468999999999997776642 35666665543
No 142
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=86.60 E-value=0.59 Score=30.43 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=17.9
Q ss_pred EEEEecccCchhhhhHHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLDK 36 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~ 36 (217)
|.+|+-..||||..+...|.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~ 22 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKE 22 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 789999999999998776654
No 143
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=86.50 E-value=1.1 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRA 211 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~ 211 (217)
..+.+.+|.++||+++ +|+ ..+.|..+.+.|.+.
T Consensus 64 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 64 ELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred hhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence 3456789999999987 554 235788888877654
No 144
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=86.44 E-value=0.75 Score=29.90 Aligned_cols=20 Identities=25% Similarity=0.673 Sum_probs=17.1
Q ss_pred EEEEecccCchhhhhHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~ 35 (217)
|.+|+-+.||+|-.+...|.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~ 20 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLS 20 (79)
T ss_pred CEEEecCCChhHHHHHHHHH
Confidence 57899999999999887765
No 145
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=86.34 E-value=1.3 Score=31.01 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=28.8
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..++.|..|+-+-||.|....+.+.++.+++++
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~ 55 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP 55 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh
Confidence 567888888889999999999999999988763
No 146
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.32 E-value=0.62 Score=32.14 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEEecccCchhhhhHHHHH
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
..|.+|+-+.||||..+...|.
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~ 29 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLL 29 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHH
Confidence 4588999999999998777554
No 147
>PRK10638 glutaredoxin 3; Provisional
Probab=86.27 E-value=0.79 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.766 Sum_probs=17.9
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
+|.+|+-..||||..+...|.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~ 23 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLN 23 (83)
T ss_pred cEEEEECCCChhHHHHHHHHH
Confidence 588999999999999777665
No 148
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=86.21 E-value=1.7 Score=29.32 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=25.6
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
+..+..|+..-||.|....+.+.++.+.+.
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFA 48 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhC
Confidence 457788889999999999999999888765
No 149
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=86.10 E-value=17 Score=29.69 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCcccccccC---cccchhHHHHHHHHHhCCCCeecEEEE
Q 027910 124 QHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLDD---PNSGLNEVHEELKKYSANISGVPHFVL 193 (217)
Q Consensus 124 ~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~~---~~~~~~~~~~~~~a~~~gv~g~Pt~vv 193 (217)
...++..|.+.+ |-++.+.-+ ..+|..++++.|++.-.+.++. +..... .-|...+..+||.-||++++
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~-~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNS-RSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCc-cCChHHHHhcCCccCceEEE
Confidence 566777777664 445554333 3678889999998765542332 222222 23677889999999999977
Q ss_pred ---C-Cee-ee-cCCCCHHHHHHHHHHHh
Q 027910 194 ---N-GKH-EL-SGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 194 ---~-g~~-~~-~G~~~~~~l~~~i~~~~ 216 (217)
+ +++ .| .|..+.++|.+.|..++
T Consensus 220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 220 VNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 2 443 33 69999999999887765
No 150
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=86.09 E-value=1.6 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.003 Sum_probs=26.1
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+.+..|+..-||.|....+.+.++.+++.
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~ 49 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAARALK 49 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 367888888999999999999999988775
No 151
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=86.00 E-value=1.4 Score=31.06 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=26.8
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
...+..|+.+.||.|....+.+.++.++|+
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~ 52 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHL 52 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcC
Confidence 567888889999999999999999988775
No 152
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=85.96 E-value=3.5 Score=27.88 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCC--eecEEEE--C--C-eeeecCC-CCHHHHHHHHHHH
Q 027910 145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANIS--GVPHFVL--N--G-KHELSGG-QPPEVYLRAFQVA 215 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~--g~Pt~vv--~--g-~~~~~G~-~~~~~l~~~i~~~ 215 (217)
...+.++|++.. +.-.| .++.++ ....+...|+. ++|++++ + | +|...+. .+.+.+.+.|++.
T Consensus 31 ~~~~~~vA~~~~-~~v~f~~vd~~~-------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 31 RERFKEVAKKFK-GKLLFVVVDADD-------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHHhC-CeEEEEEEchHh-------hHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 355667777764 22233 444332 33467788998 9999988 3 3 3444433 3788888887754
No 153
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=85.66 E-value=0.75 Score=29.38 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=17.8
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
+|.+|+...||+|..+.+.|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~ 21 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLD 21 (77)
T ss_pred CEEEEECCCChhHHHHHHHHH
Confidence 478999999999999777664
No 154
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=85.63 E-value=1.1 Score=30.52 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=24.5
Q ss_pred HHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLR 210 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~ 210 (217)
..+.+.+|.++||+++ +|+ ..+.|..+.+.|.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 63 MLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred HHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHh
Confidence 4567889999999977 565 23578888877654
No 155
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=85.62 E-value=1.9 Score=31.71 Aligned_cols=33 Identities=12% Similarity=0.019 Sum_probs=27.6
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..++.|.+|+-.-|++|....+.+.++.++|..
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~ 51 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD 51 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc
Confidence 346677788889999999999999999887753
No 156
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=85.51 E-value=1.5 Score=30.12 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=26.7
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
....+..|+.+-|++|....+.+.++.+++.+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~ 49 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG 49 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC
Confidence 44578888889999999999999998887753
No 157
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=85.46 E-value=1.4 Score=36.05 Aligned_cols=41 Identities=5% Similarity=-0.068 Sum_probs=32.6
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~ 59 (217)
..-+.+|+.-.||+|-...+.|+.+.++| ++.|. |+++++.
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~--~VS~DG~ 191 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVI--PISVDGT 191 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEE--EEecCCC
Confidence 46789999999999999999999888754 56664 6666554
No 158
>PTZ00062 glutaredoxin; Provisional
Probab=85.27 E-value=3.7 Score=32.39 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=23.0
Q ss_pred CCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910 183 ANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 183 ~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~ 215 (217)
.+|.++|||++ +|+- .+.|+. +..+.+.|.+.
T Consensus 58 ~~V~~vPtfv~~~~g~~i~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 58 DANNEYGVFEFYQNSQLINSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred cCcccceEEEEEECCEEEeeeeCCC-HHHHHHHHHHH
Confidence 99999999988 6652 356774 66666666543
No 159
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=0.91 Score=30.01 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=18.0
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
.|++|+=+.||||-.+...|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred CEEEEECCCCchHHHHHHHHH
Confidence 578899999999999887665
No 160
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=85.03 E-value=1.4 Score=29.40 Aligned_cols=31 Identities=10% Similarity=-0.073 Sum_probs=25.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+..+.+|+...|+.|....+.+.++.++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~ 44 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE 44 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc
Confidence 3466777778999999999999999887765
No 161
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=84.95 E-value=1 Score=30.07 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEecccCchhhhhHHHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKA 37 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~ 37 (217)
|.+|+-+.||||-.+...|.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKL 23 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHh
Confidence 6789999999999988877765
No 162
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=84.92 E-value=1.7 Score=32.16 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=31.6
Q ss_pred CcccCCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeE
Q 027910 6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEI 49 (217)
Q Consensus 6 ~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v 49 (217)
+...-..++.|..|+..-|| |-...+.|.++.++|.+ .++.+
T Consensus 16 ~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~v 57 (152)
T cd00340 16 SLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVV 57 (152)
T ss_pred eHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEE
Confidence 33333457888888899999 99999999999988863 34444
No 163
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=84.67 E-value=1.9 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=25.5
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+..+.+|+..-|+.|....+.+.++.+++.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK 48 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 4556777778999999999999999887765
No 164
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=84.66 E-value=0.77 Score=29.92 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=17.9
Q ss_pred EEEEecccCchhhhhHHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLDK 36 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~ 36 (217)
|.+|+-..||||..+.+.|.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~ 21 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAK 21 (84)
T ss_pred CEEEECCCChhHHHHHHHHHH
Confidence 578999999999998887764
No 165
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=84.56 E-value=2.6 Score=29.93 Aligned_cols=36 Identities=14% Similarity=-0.030 Sum_probs=27.1
Q ss_pred cCcccCCcceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910 5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~ 40 (217)
.+...-+.+..|..|+..-||.|....+.+.++.++
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~ 53 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ 53 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh
Confidence 343343456778888899999999999999887664
No 166
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.36 E-value=1.4 Score=32.81 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
...+.+.+..|++-++..+ .++++++.+.+-. ....+-..+|.++|+|++ |.|+.....
T Consensus 20 ~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~--g~~~~~~tvPqVFI~G~~-IGG~del~~ 79 (147)
T cd03031 20 NNVRAILESFRVKFDERDVSMDSGFREELRELL--GAELKAVSLPRVFVDGRY-LGGAEEVLR 79 (147)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh--CCCCCCCCCCEEEECCEE-EecHHHHHH
Confidence 4566777888887665533 2333333333211 111234789999999994 677754433
No 167
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=84.09 E-value=2.4 Score=26.15 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910 146 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ 203 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~ 203 (217)
..+..+..+.|++-....+.+.. ...+. .....|...+|++++||+ .+.|..
T Consensus 14 ~~~~~~L~~~~i~~~~~di~~~~---~~~~~--l~~~~~~~~~P~~~~~~~-~igg~~ 65 (72)
T cd02066 14 KRAKRLLESLGIEFEEIDILEDG---ELREE--LKELSGWPTVPQIFINGE-FIGGYD 65 (72)
T ss_pred HHHHHHHHHcCCcEEEEECCCCH---HHHHH--HHHHhCCCCcCEEEECCE-EEecHH
Confidence 44556667777665444332221 12222 223457789999999998 567763
No 168
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=83.94 E-value=1.7 Score=30.81 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=29.3
Q ss_pred cCCcceEEEEEecc-cCchhhhhHHHHHHHHHhcCC
Q 027910 9 AGKKLIRIDVSSDT-VCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 9 ~~~~~v~i~~y~D~-~CP~cy~~~~~l~~~~~~~~~ 43 (217)
....++.|.+|.++ .||-|....|.+.++.++|++
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~ 60 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG 60 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC
Confidence 34567778888887 999999999999999998864
No 169
>PHA03050 glutaredoxin; Provisional
Probab=83.68 E-value=1 Score=31.68 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=18.1
Q ss_pred eEEEEEecccCchhhhhHHHHH
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
-+|.+|+-..||||-.+...|.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~ 34 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILN 34 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHH
Confidence 3588999999999998776664
No 170
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=83.66 E-value=2.4 Score=29.40 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=27.1
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..+..+..|+-+-||+|-...+.+.++.+.|.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~ 51 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA 51 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 34667788888999999999999999888776
No 171
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=83.61 E-value=1.9 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRA 211 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~ 211 (217)
..+.+.||.++||+++ +|. ..+.|..+.+.|.+.
T Consensus 63 ~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 63 SLLSRYGVVGFPTILLFNSTPRVRYNGTRTLDSLAAF 99 (100)
T ss_pred HHHHhcCCeecCEEEEEcCCceeEecCCCCHHHHHhh
Confidence 4457889999999977 342 345788888877653
No 172
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=83.50 E-value=3.6 Score=26.49 Aligned_cols=28 Identities=11% Similarity=-0.081 Sum_probs=24.3
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHh
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIAS 40 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~ 40 (217)
+..|.+|+...|++|....+.+.++.+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 5668888889999999999999988875
No 173
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=2.9 Score=29.29 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~ 214 (217)
....+.+.+|.++|||++ +|+. .+.|+. .+.+++.|.+
T Consensus 63 ~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 63 LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN-KAELEKKIAK 104 (106)
T ss_pred CHhHHHhcCceEeeEEEEEECCEEEEEEecCC-HHHHHHHHHh
Confidence 455678999999999988 6652 357874 4477777654
No 174
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=83.09 E-value=3.3 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=27.0
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+..|..|+.+.|+.|....+.++++.++|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~ 54 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP 54 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 3677778888999999999999999988775
No 175
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=83.04 E-value=2.4 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=24.9
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
|.+|+...||+|....+.+.++ + +. ..++.+.....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-~~-~~~~~~~~~~~ 36 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-LL-NKGVKFEAVDV 36 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-hh-CCCcEEEEEEc
Confidence 4578889999999999988876 2 22 23456655443
No 176
>PTZ00051 thioredoxin; Provisional
Probab=82.96 E-value=1.7 Score=29.17 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHhCCCCeecEEEE--CCee--eecCCCCHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYL 209 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~ 209 (217)
..+.+.|+.++||+++ +|+. .+.|. ..+.|.
T Consensus 62 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 62 EVAEKENITSMPTFKVFKNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred HHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHHHhh
Confidence 4577899999999988 5652 34676 445443
No 177
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=82.84 E-value=1.8 Score=27.83 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=16.8
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
+|.+|+...||+|..+.-.|.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHH
Confidence 467889999999999776554
No 178
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=82.65 E-value=2.4 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=26.5
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
+..+..|+..-||+|....+.+.++.+.+..
T Consensus 18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~ 48 (104)
T cd02997 18 KHVLVMFYAPWCGHCKKMKPEFTKAATELKE 48 (104)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhh
Confidence 4678888889999999999999998887763
No 179
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=82.60 E-value=1.6 Score=29.51 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHHHHhCCCCeecEEEE--CC-e--eeecCCCCHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL--NG-K--HELSGGQPPEVYLRA 211 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~~~~l~~~ 211 (217)
...+.++++.++|++++ +| + ..+.|..+.+.|.+.
T Consensus 65 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 65 KDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 35577899999999987 23 2 335687777777653
No 180
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=82.55 E-value=3.3 Score=28.54 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=26.2
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+..+..|+.+-||+|....+.+.++.+++.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~ 48 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIK 48 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHh
Confidence 3567888889999999999999998887664
No 181
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=82.49 E-value=2.6 Score=28.47 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=24.5
Q ss_pred HHHHHhCCCCeecEEEE--CCe---eeecCCCCHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL--NGK---HELSGGQPPEVYLRA 211 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~---~~~~G~~~~~~l~~~ 211 (217)
...+.+.||.++|++++ +|+ +.+.|..+.+.|.+.
T Consensus 62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred HHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHH
Confidence 34567889999999977 342 235687787777554
No 182
>smart00594 UAS UAS domain.
Probab=82.48 E-value=2.3 Score=30.34 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHhCCCCeecEEEE---CC-e------eeecCCCCHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL---NG-K------HELSGGQPPEVYLRAF 212 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv---~g-~------~~~~G~~~~~~l~~~i 212 (217)
.+.+..+++.|+|+++| +| + ..+.|..++++|...|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 56778899999999977 33 1 1457999999998765
No 183
>PTZ00051 thioredoxin; Provisional
Probab=82.38 E-value=2.6 Score=28.29 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=26.6
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..+..+..|+...||.|....+.+.++.++++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~ 48 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT 48 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC
Confidence 35677888888999999999999998887654
No 184
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=82.19 E-value=3 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=27.7
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
+..+.+..|+-.-||.|....+.+.++.++|.
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~ 45 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELK 45 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHH
Confidence 34577899999999999999999999888775
No 185
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=82.10 E-value=1.9 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=27.5
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
.+++-|.+|...-||+|....+.|.++.++|.. .++.+.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i 60 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVL 60 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 334444444488899999999999999888752 345554
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=81.60 E-value=1.7 Score=26.91 Aligned_cols=20 Identities=40% Similarity=0.775 Sum_probs=16.9
Q ss_pred EEEEecccCchhhhhHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~ 35 (217)
|.+|+...||+|..+...|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~ 21 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLE 21 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 67899999999999777664
No 187
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=80.93 E-value=29 Score=28.29 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHH----hhcCCCCCC---HHHHHHHHHHcCCCccccccc---CcccchhHHHHHHHHHhCCCCeecEEEE
Q 027910 124 QHNLAEELFLGY----FTQGKYIGD---KEFLVECARKVGVEGAAEFLD---DPNSGLNEVHEELKKYSANISGVPHFVL 193 (217)
Q Consensus 124 ~~~~~~al~~a~----~~~g~~i~~---~~~L~~ia~~~Gld~~~~~l~---~~~~~~~~~~~~~~a~~~gv~g~Pt~vv 193 (217)
....+..|.+.+ |-++.+.-+ ..+|..++++.|++.-.+.++ .++.... .-|...+..+||.-||++++
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~-~~d~gqa~~l~v~~~PAl~L 212 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDS-RTDQGQAQRLGVKYFPALML 212 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCC-ccChhHHHhcCCcccceEEE
Confidence 566677776664 445655333 478889999999976544332 2333322 34556678999999999977
Q ss_pred -C---Cee-ee-cCCCCHHHHHHHHHHHh
Q 027910 194 -N---GKH-EL-SGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 194 -~---g~~-~~-~G~~~~~~l~~~i~~~~ 216 (217)
+ +++ .| .|..+.++|.+.|..++
T Consensus 213 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 213 VDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 2 343 33 69999999999888664
No 188
>PTZ00256 glutathione peroxidase; Provisional
Probab=80.71 E-value=23 Score=27.06 Aligned_cols=37 Identities=19% Similarity=0.042 Sum_probs=27.9
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
++.|.+++---||.|..-.+.|.++.++|.+ .++.|.
T Consensus 42 ~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~-~gv~vv 78 (183)
T PTZ00256 42 KAIIVVNVACKCGLTSDHYTQLVELYKQYKS-QGLEIL 78 (183)
T ss_pred cEEEEEEECCCCCchHHHHHHHHHHHHHHhh-CCcEEE
Confidence 3455666788899999999999999998864 345553
No 189
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=80.65 E-value=7.1 Score=28.10 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=21.0
Q ss_pred hCCCCeecEEEE---CCeeee-cC---------CCCHHHHHHHHHHHh
Q 027910 182 SANISGVPHFVL---NGKHEL-SG---------GQPPEVYLRAFQVAA 216 (217)
Q Consensus 182 ~~gv~g~Pt~vv---~g~~~~-~G---------~~~~~~l~~~i~~~~ 216 (217)
..|+.|+||++| +|+.+. .| ..+.-.+...|++.|
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELW 122 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHH
Confidence 458999999988 465221 12 135555556665554
No 190
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=80.14 E-value=2.5 Score=27.97 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCeecEEEE--CC-e--eeecCCCCHHHHHH
Q 027910 176 EELKKYSANISGVPHFVL--NG-K--HELSGGQPPEVYLR 210 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv--~g-~--~~~~G~~~~~~l~~ 210 (217)
+.......||.++||+++ +| + ..+.|..+.+.+.+
T Consensus 60 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 60 NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHh
Confidence 456678899999999977 33 2 22457666776654
No 191
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=79.90 E-value=5.8 Score=27.11 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=26.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.+..|..|+-.-||.|....+.+.++.++|+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~ 47 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELG 47 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcC
Confidence 5567788888999999999999999888775
No 192
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=79.86 E-value=1.9 Score=29.87 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|-.+...|.+ .++.++++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE--------HGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH--------cCCCcEEEeec
Confidence 468999999999998766642 35677666654
No 193
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=79.80 E-value=3.9 Score=27.62 Aligned_cols=39 Identities=3% Similarity=-0.237 Sum_probs=31.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
....+.+|++..|+.|-...+.++++.++|++ .+.+.|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~v 50 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVV 50 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEE
Confidence 45677788889999999999999999998864 4666654
No 194
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.80 E-value=3.8 Score=35.92 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCcccccccCcccchhHHHHHH---HHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 147 FLVECARKVGVEGAAEFLDDPNSGLNEVHEEL---KKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~---~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
..++++.+.|++-....+++......+.+... .....|..+||+++|||+ .+.|.++...
T Consensus 17 ~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~-~igGf~~l~~ 79 (410)
T PRK12759 17 LAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDV-HIGGYDNLMA 79 (410)
T ss_pred HHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCE-EEeCchHHHH
Confidence 45667778888766554443322222222221 223468899999999998 5788865544
No 195
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=79.66 E-value=1.8 Score=29.71 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=11.5
Q ss_pred ccCchhhhhHHHHH
Q 027910 22 TVCPWCFVGKRNLD 35 (217)
Q Consensus 22 ~~CP~cy~~~~~l~ 35 (217)
+.||||..+...|.
T Consensus 25 ~~Cp~C~~ak~lL~ 38 (97)
T TIGR00365 25 PQCGFSARAVQILK 38 (97)
T ss_pred CCCchHHHHHHHHH
Confidence 88999998777664
No 196
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=79.13 E-value=3.7 Score=29.71 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.2
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
+++.|.+|...-||.|-...+.|.++.++|.. .++.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv 61 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELV 61 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEE
Confidence 56667777789999999999999998887752 345543
No 197
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=79.07 E-value=5.8 Score=27.12 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=27.9
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..++.+..|+-+-||.|....+.+.++.++|+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~ 48 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP 48 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc
Confidence 45778888888999999999999999988775
No 198
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=78.84 E-value=3.6 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.7
Q ss_pred CcceEEEEEec------ccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSD------TVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D------~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..++-|.||.| .=||.|..+.+.++++.++++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 34667777776 999999999999999998876
No 199
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=78.42 E-value=5.2 Score=32.00 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHhCCCCeecEEEE--CCeee--ecCCCCHHHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGKHE--LSGGQPPEVYLRAFQV 214 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~~~--~~G~~~~~~l~~~i~~ 214 (217)
..+.+.||.|+||+++ +|+.. ..|..+.+.|.+.+++
T Consensus 97 ~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 97 NLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred HHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHH
Confidence 4567899999999987 56522 2577888888887764
No 200
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=78.20 E-value=3.1 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=24.8
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|..+...|.+ .++.++++.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~--------~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE--------HQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH--------CCCceEEEecC
Confidence 679999999999997776642 36777777664
No 201
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=77.98 E-value=2.3 Score=29.72 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=23.6
Q ss_pred EEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 18 ~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
+|||=.||+|......+.+. +..-.++|.|+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~------d~~~~l~~~~~~ 32 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRR------DRGGRLRFVDIQ 32 (114)
T ss_pred CEECCCCHhHHHHHHHHHhc------CCCCCEEEEECC
Confidence 48999999999988877643 223567777773
No 202
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=77.84 E-value=2.5 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|..+...|.+ .++.++++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEA--------NGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHH--------cCCceEEEecC
Confidence 468999999999998776642 36777777664
No 203
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=77.38 E-value=2.9 Score=30.41 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.3
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|-.+...|. +.++.++++.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~--------~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE--------EHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH--------HcCCCcEEeecc
Confidence 78999999999999776554 236777776654
No 204
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=77.27 E-value=2.2 Score=30.33 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=16.3
Q ss_pred HHHHHhCCCCeecEEEE--CCe
Q 027910 177 ELKKYSANISGVPHFVL--NGK 196 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~ 196 (217)
.+.+.+.||.++|||++ +|+
T Consensus 58 ~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 58 PDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHcCCCCCCEEEEEECCE
Confidence 35678899999999988 665
No 205
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=5 Score=32.64 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCCeecEEEE--CCee--eecCCCCHHHHHHHHHHH
Q 027910 172 NEVHEELKKYSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 172 ~~~~~~~~a~~~gv~g~Pt~vv--~g~~--~~~G~~~~~~l~~~i~~~ 215 (217)
.+.+-...|...||...|||++ ||+. .+.|+ +...|+..+.+.
T Consensus 59 dVd~c~~taa~~gV~amPTFiff~ng~kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 59 DVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred eHHHhhchhhhcCcccCceEEEEecCeEeeeecCC-CHHHHHHHHHHH
Confidence 3566667788999999999987 6752 35787 455666665543
No 206
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=76.49 E-value=4.6 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.4
Q ss_pred CcceEEEEEecccCchhhhhHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l 34 (217)
-.+.++.+|+-..||||....-.|
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L 37 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVL 37 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHH
Confidence 346678889999999999765444
No 207
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=76.21 E-value=2.9 Score=26.02 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.8
Q ss_pred EEEEecccCchhhhhHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~ 35 (217)
|.+|+-..||+|..+.+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~ 21 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT 21 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH
Confidence 78999999999998776554
No 208
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=76.05 E-value=5.3 Score=27.16 Aligned_cols=59 Identities=3% Similarity=-0.180 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCcccccc-cCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHH
Q 027910 146 EFLVECARKVGVEGAAEFL-DDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV 207 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~~l-~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~ 207 (217)
..+..+....|++-++..+ .+++.++.+.+.. ..+.|-..+|-+||||+| +.|+.....
T Consensus 20 ~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~--~~~~g~~tvPQIFi~~~~-iGg~ddl~~ 79 (92)
T cd03030 20 QEVLGFLEAKKIEFEEVDISMNEENRQWMRENV--PNENGKPLPPQIFNGDEY-CGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHCCCceEEEecCCCHHHHHHHHHhc--CCCCCCCCCCEEEECCEE-eeCHHHHHH
Confidence 4456677888887776633 3444444333221 112356789999999985 677644333
No 209
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=75.97 E-value=3.4 Score=29.23 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=25.2
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|.-+.|+.|..+...|. +.++.++++.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~--------~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE--------AAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH--------HcCCCcEEeehh
Confidence 67999999999998877664 246777777765
No 210
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.86 E-value=3.4 Score=34.37 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCeecEEEE--CCeee--ecCCCCHHHHHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVL--NGKHE--LSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv--~g~~~--~~G~~~~~~l~~~i~~~ 215 (217)
+-..+...||.++||++. +|+.+ +.|.+|.+.+.+.|+++
T Consensus 86 ~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 86 EPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred chhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHh
Confidence 344577899999999965 78732 46888889999988865
No 211
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.81 E-value=3.7 Score=29.94 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.4
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|..+...|. +.++.++++.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~--------~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLN--------AHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHH--------HcCCCeEEEECC
Confidence 77999999999999777664 246788887765
No 212
>PRK12559 transcriptional regulator Spx; Provisional
Probab=75.04 E-value=4.7 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=24.8
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.||+|..+...|. +.++.++++.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~--------~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE--------ENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH--------HcCCCeEEEEee
Confidence 78999999999999877664 236777777665
No 213
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=74.83 E-value=6.4 Score=32.41 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=30.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP 58 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~ 58 (217)
.+..|.+|+..-||+|....+.|.++.++| ++.|. ++.++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y----g~~Vi--~VsvD~ 206 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY----GIEVL--PVSVDG 206 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHc----CcEEE--EEeCCC
Confidence 456788888889999999999999988765 35554 444443
No 214
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=74.62 E-value=3.6 Score=28.69 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=24.8
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.|+.|..+...|. +.++.++++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~--------~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLE--------ARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHH--------HcCCCeEEEecc
Confidence 57899999999999877664 236777777665
No 215
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=74.59 E-value=8.1 Score=28.89 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=25.9
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..+.|..|+-+-||.|....+.+.++.+++.
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~ 77 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYN 77 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcc
Confidence 3466777777899999999999999988775
No 216
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=74.58 E-value=6.7 Score=27.68 Aligned_cols=34 Identities=3% Similarity=-0.000 Sum_probs=28.9
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
...++.+..|+-+-|+.|-...+.+.++.++|++
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~ 60 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD 60 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence 4556788888889999999999999999888753
No 217
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=74.42 E-value=6.1 Score=35.98 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=31.4
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEee
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP 53 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p 53 (217)
.++++|.+|..+.||||-.+...+.++....+ ++..+..-
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~ 514 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMID 514 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEE
Confidence 35899999999999999999998988877543 45555443
No 218
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=73.77 E-value=7.5 Score=27.28 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=26.0
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
+..+..|+.+-||.|....+.+.++.+++.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~ 49 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLR 49 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHH
Confidence 577888888999999999999998887765
No 219
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=73.74 E-value=6.3 Score=35.51 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=28.8
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~ 51 (217)
.+++|.+|..+.||||-.+...+.++....+ +++.+.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~ 153 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTM 153 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEE
Confidence 5899999999999999988888877765544 344443
No 220
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=73.65 E-value=6.4 Score=35.47 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=29.4
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
.++++|.+|..+.||||-.+...+.++....+ .+..+..
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~i 153 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMI 153 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEE
Confidence 35899999999999999998888877765433 3444433
No 221
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=72.94 E-value=4.8 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=23.3
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
+.+|+-.-||+|....+.|.++.++|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY 98 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc
Confidence 77888899999999999999988765
No 222
>PTZ00102 disulphide isomerase; Provisional
Probab=72.74 E-value=6.3 Score=34.81 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHHHHh
Q 027910 177 ELKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~~~~ 216 (217)
...+.+.||.|+||+++ +|+ ..+.|..+.+.|.+.|++..
T Consensus 96 ~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 96 MELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred HHHHHhcCCCcccEEEEEECCceEEecCCCCHHHHHHHHHHhh
Confidence 45677899999999977 443 34679899999999888653
No 223
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=72.67 E-value=6.8 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
....|..|+-.-||.|....|.|.++.++|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~ 79 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF 79 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 355688899999999999999999988765
No 224
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=72.66 E-value=9.2 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=22.7
Q ss_pred cceEEEEEecccCchhhhhHHHH---HHHHHhcC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNL---DKAIASSK 42 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l---~~~~~~~~ 42 (217)
.+..|.+|+-.-||+|....+.+ .++.+.+.
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~ 44 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK 44 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh
Confidence 45667777789999999998776 34555554
No 225
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=72.62 E-value=6.8 Score=26.24 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=25.3
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.+..|+..-||.|-...+.+.++.+++..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~ 47 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhc
Confidence 77788889999999999999998887753
No 226
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=72.42 E-value=8.6 Score=27.32 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=28.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..++.|..|+-.-||-|....|.+.++.++|++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~ 45 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN 45 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC
Confidence 456778888889999999999999999988764
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.24 E-value=2.6 Score=35.04 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=25.6
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCCC
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQ 44 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~ 44 (217)
..|+.|+-+.|+-|....+.|.++.++|.++
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~ 75 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK 75 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCc
Confidence 3455556699999999999999999999864
No 228
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=71.86 E-value=7.9 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=23.6
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
.|..|+-+-||.|....+.+.++.+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~ 46 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSD 46 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhc
Confidence 4788888999999999999998877543
No 229
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=71.16 E-value=25 Score=25.44 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCC--CeecEEEE----CCeee-ecCCCCHHHHHHHHHHHh
Q 027910 145 KEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANI--SGVPHFVL----NGKHE-LSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv--~g~Pt~vv----~g~~~-~~G~~~~~~l~~~i~~~~ 216 (217)
.+.|.++|++..=.+-.| .++..+... ....+|+ .++|++++ +++|. ..|.-+.+.+.+-++...
T Consensus 43 ~~~l~~vAk~~kgk~i~Fv~vd~~~~~~-------~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 43 LEILKSVAEKFKKKPWGWLWTEAGAQLD-------LEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCcccHH-------HHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHH
Confidence 355777888764443344 555443221 4456777 46999988 24777 567777888877776543
No 230
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=71.10 E-value=9.9 Score=29.08 Aligned_cols=30 Identities=13% Similarity=-0.061 Sum_probs=26.0
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
...|..|+.+-||-|....+.|.++.++|+
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~ 113 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP 113 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC
Confidence 467777888999999999999999998875
No 231
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=70.48 E-value=5 Score=28.00 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=16.2
Q ss_pred HHHHhCCCCeecEEEE--CCe
Q 027910 178 LKKYSANISGVPHFVL--NGK 196 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~ 196 (217)
..+.+.+|.++||+++ +|+
T Consensus 67 ~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 67 FLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred HHHHhcCCCcCCEEEEEECCE
Confidence 6678899999999988 676
No 232
>PRK10996 thioredoxin 2; Provisional
Probab=70.48 E-value=8.6 Score=28.05 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=26.7
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.+..+.+|+-..||.|....+.+.++.+++.+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~ 83 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG 83 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC
Confidence 46778888889999999999999998877653
No 233
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=70.16 E-value=13 Score=26.06 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=22.5
Q ss_pred ceEEEEE-ecccCchhhhhHHHHHHHHHhc
Q 027910 13 LIRIDVS-SDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 13 ~v~i~~y-~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
++.+.+| +-.-||+|-...+.+.++.+.+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~ 51 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS 51 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc
Confidence 4555555 4579999999999999887765
No 234
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=69.97 E-value=5.7 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=24.2
Q ss_pred HHH-HhCCCCeecEEEE--CCe--eeecCCCCHHHHHH
Q 027910 178 LKK-YSANISGVPHFVL--NGK--HELSGGQPPEVYLR 210 (217)
Q Consensus 178 ~~a-~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~ 210 (217)
..+ .+.+|.|+|||++ +|+ ....|..+.+.++.
T Consensus 74 ~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 74 GKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HHHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHh
Confidence 345 4789999999977 554 34578888887765
No 235
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=69.47 E-value=5.1 Score=26.87 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=14.6
Q ss_pred EEEEEec-----ccCchhhhhHHHHH
Q 027910 15 RIDVSSD-----TVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D-----~~CP~cy~~~~~l~ 35 (217)
.|.+|+- +.||||..+...|.
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~ 34 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILN 34 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHH
Confidence 4455543 79999998777665
No 236
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=69.41 E-value=4 Score=35.72 Aligned_cols=22 Identities=23% Similarity=0.603 Sum_probs=18.6
Q ss_pred EEEEEecccCchhhhhHHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDK 36 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~ 36 (217)
+|.+|+-+.||||-.+...|.+
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHH
Confidence 5889999999999998776653
No 237
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=68.77 E-value=6.8 Score=28.08 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=26.6
Q ss_pred cceEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
.++.|.+|+ -.-||+|-...+.+.++.++|.+ .++.+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv 61 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVI 61 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEE
Confidence 344444544 67899999999999988887763 345543
No 238
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.73 E-value=7.2 Score=27.96 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=26.9
Q ss_pred CcceEEEEEecc-------cCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSSDT-------VCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~D~-------~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
...+-|.|+.+- =||.|-.+.|.+.+++++.+. ++.++
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v 69 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFV 69 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEE
Confidence 334556666554 599999999999999986654 34444
No 239
>PRK10824 glutaredoxin-4; Provisional
Probab=68.70 E-value=5.2 Score=28.47 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=11.9
Q ss_pred ccCchhhhhHHHHHH
Q 027910 22 TVCPWCFVGKRNLDK 36 (217)
Q Consensus 22 ~~CP~cy~~~~~l~~ 36 (217)
+.||||-.+...|..
T Consensus 28 p~Cpyc~~ak~lL~~ 42 (115)
T PRK10824 28 PSCGFSAQAVQALSA 42 (115)
T ss_pred CCCchHHHHHHHHHH
Confidence 699999998776653
No 240
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=68.61 E-value=11 Score=25.07 Aligned_cols=30 Identities=3% Similarity=-0.109 Sum_probs=25.3
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
.+..+..|+-.-|+.|-...+.+.++.+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~ 43 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA 43 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 467777777899999999999999888764
No 241
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=68.51 E-value=5 Score=28.19 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.9
Q ss_pred HHHHhCCCCeecEEEE--CCe
Q 027910 178 LKKYSANISGVPHFVL--NGK 196 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~ 196 (217)
..+.+.+|.++||+++ +|+
T Consensus 66 ~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 66 FLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHCCCccCCEEEEEECCE
Confidence 4678899999999988 665
No 242
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=68.36 E-value=7.4 Score=28.26 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=26.1
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
++-|.+|.-.-||.|-...+.+.++.++|.+ .++++.
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi 66 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVL 66 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEE
Confidence 3444444467799999988999998888863 345543
No 243
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=67.93 E-value=5.3 Score=28.29 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.3
Q ss_pred ceEEEEEecccCchhhhhHHHHH
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
++.+.+|+..-||+|-...+.+.
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~ 37 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYL 37 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhc
Confidence 67788888999999999887663
No 244
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=67.57 E-value=9.3 Score=30.59 Aligned_cols=31 Identities=10% Similarity=-0.024 Sum_probs=26.4
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
...+..|+-+-||.|....+.+.++.+++++
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~ 83 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG 83 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC
Confidence 4567778889999999999999999888864
No 245
>PHA02278 thioredoxin-like protein
Probab=67.18 E-value=11 Score=25.99 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=25.5
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
.....|..|+-+-|+-|....|.+.++.+++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~ 43 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG 43 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh
Confidence 4567777888899999999999999887653
No 246
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=67.13 E-value=11 Score=25.68 Aligned_cols=31 Identities=6% Similarity=-0.250 Sum_probs=26.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
..++.|..|+-.-|+.|....+.+.++.++|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~ 44 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC 44 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC
Confidence 3567777777789999999999999988877
No 247
>PHA02125 thioredoxin-like protein
Probab=66.56 E-value=7.5 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEEecccCchhhhhHHHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKA 37 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~ 37 (217)
|.+|+-..||+|-...+.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7889999999999988887643
No 248
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=66.52 E-value=7 Score=24.13 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=16.1
Q ss_pred EEEEecccCchhhhhHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~ 35 (217)
|.+|+-..||+|..+...|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~ 21 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLD 21 (73)
T ss_pred EEEEeCCCChhHHHHHHHHH
Confidence 67889999999998666554
No 249
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=66.38 E-value=12 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHHHHHHhCCCCeecEEEE--CCeee--ecCCCCHHH
Q 027910 175 HEELKKYSANISGVPHFVL--NGKHE--LSGGQPPEV 207 (217)
Q Consensus 175 ~~~~~a~~~gv~g~Pt~vv--~g~~~--~~G~~~~~~ 207 (217)
.+.+.+.+.|+...|++++ +|+|. |.|.++=.+
T Consensus 70 ~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 70 AERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred hHHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 4455677899999999988 78864 577765443
No 250
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=66.23 E-value=16 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=23.6
Q ss_pred eEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
+.+..|+-.-||.|....+.+.++.+.+..
T Consensus 34 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~ 63 (127)
T COG0526 34 PVLVDFWAPWCPPCRAEAPLLEELAEEYGG 63 (127)
T ss_pred eEEEEEEcCcCHHHHhhchhHHHHHHHhcC
Confidence 444444589999999999999999887653
No 251
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.78 E-value=5.9 Score=25.48 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.9
Q ss_pred EEEEecccCchhhhhHHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~ 35 (217)
+.+|+...||||....-.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLT 21 (77)
T ss_pred ceEecCCCCchHHHHHHHHH
Confidence 57899999999998665553
No 252
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=65.40 E-value=12 Score=32.60 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=29.3
Q ss_pred HHHHhCCCCeecEEEE--CCe---eeecCCCCHHHHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK---HELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~---~~~~G~~~~~~l~~~i~~~ 215 (217)
+.+.+.||.|+||+++ +|+ ..+.|..+.+.|.+.|.+.
T Consensus 66 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 66 DLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred HHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHh
Confidence 4567889999999977 455 3467888888888887754
No 253
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=65.06 E-value=17 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHhCCCCee-cE-EEEC--Ce--eeecCCCCHHHHHHHHHHHh
Q 027910 178 LKKYSANISGV-PH-FVLN--GK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 178 ~~a~~~gv~g~-Pt-~vv~--g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
..+...|+.|. || |+|| |+ +...|..+.+++.+.+..+.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~ 180 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVN 180 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
No 254
>PHA01083 hypothetical protein
Probab=64.83 E-value=10 Score=28.14 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.0
Q ss_pred hhcC-CCCCCHHHHHHHHHHcCCCcccc
Q 027910 136 FTQG-KYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 136 ~~~g-~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
|..| +..-+.+....+|+.+|+|+...
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~ea 63 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPEIA 63 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 5677 66557788999999999999765
No 255
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=64.34 E-value=9.6 Score=24.12 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=16.3
Q ss_pred EEEEEecccCchhhhhHHHHH
Q 027910 15 RIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~ 35 (217)
++.+|+.+.||+|....-.+.
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~ 21 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLE 21 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHH
Confidence 367899999999998665443
No 256
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=64.03 E-value=12 Score=27.78 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEE-E--CCee---eecC--------CCCHHHHHH
Q 027910 146 EFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFV-L--NGKH---ELSG--------GQPPEVYLR 210 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~v-v--~g~~---~~~G--------~~~~~~l~~ 210 (217)
+.|.+++++.+ +...+ .++ +.+..+.+...+|.+.|+++ + +|+. ...| ..+.++|..
T Consensus 43 p~l~~la~~~~-~~~~~~kVD-------VDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~ 114 (142)
T PLN00410 43 EVLASVAETIK-NFAVIYLVD-------ITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFID 114 (142)
T ss_pred HHHHHHHHHcC-CceEEEEEE-------CCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHH
Confidence 56777777642 11222 222 22344667889999886665 4 5652 2367 567788888
Q ss_pred HHHHH
Q 027910 211 AFQVA 215 (217)
Q Consensus 211 ~i~~~ 215 (217)
+++.+
T Consensus 115 ~i~~~ 119 (142)
T PLN00410 115 IVETV 119 (142)
T ss_pred HHHHH
Confidence 88754
No 257
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=63.72 E-value=22 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=18.4
Q ss_pred EEEEecccCchhhhhHHHHHHHHHh
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIAS 40 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~ 40 (217)
|+.|++=.|+-|=-+.+.|.++.++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~ 26 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR 26 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC
Confidence 6788999999999988888888764
No 258
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=63.71 E-value=5.1 Score=28.13 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.7
Q ss_pred HHHHhCCCCeecEEEE
Q 027910 178 LKKYSANISGVPHFVL 193 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv 193 (217)
..+.+.|+.++||+++
T Consensus 69 ~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 69 ALCRDFGVTGYPTLRY 84 (114)
T ss_pred HHHHhCCCCCCCEEEE
Confidence 4567889999999988
No 259
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=62.87 E-value=13 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCCeecEEEE---CCe--e-eecCCCCHHHHHHHHHHH
Q 027910 184 NISGVPHFVL---NGK--H-ELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 184 gv~g~Pt~vv---~g~--~-~~~G~~~~~~l~~~i~~~ 215 (217)
|+.++||.++ +|+ + ...|..+.+.+++.|+++
T Consensus 115 ~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 7899999876 343 2 347999999999998875
No 260
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=62.74 E-value=9.1 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=14.6
Q ss_pred EEEEecccCchhhhhHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l 34 (217)
+.+|+.+.||+|....-.|
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l 19 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTA 19 (74)
T ss_pred CEEEeCCCCCcHHHHHHHH
Confidence 3679999999999755544
No 261
>PTZ00102 disulphide isomerase; Provisional
Probab=62.60 E-value=16 Score=32.17 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=29.7
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
.+..+.+|+.+-|++|....+.+.++.+.+++...+.+.
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~ 413 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVA 413 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 466788888899999999999999887777643234443
No 262
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=62.35 E-value=19 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHhCCCCeecEEEEC--C-------------eeeecCCCCHHHHHHHHH
Q 027910 180 KYSANISGVPHFVLN--G-------------KHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 180 a~~~gv~g~Pt~vv~--g-------------~~~~~G~~~~~~l~~~i~ 213 (217)
.++.+|+.||+||+- + -.++.|..+.+.-++.|.
T Consensus 64 F~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 64 FKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred HhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 568899999999983 2 125678877666555554
No 263
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=62.11 E-value=8.9 Score=27.06 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCeec-EEEEC--Ce--eeecCCCCHHHH
Q 027910 144 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVY 208 (217)
Q Consensus 144 ~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~P-t~vv~--g~--~~~~G~~~~~~l 208 (217)
+.+.+.+++++.+++-..+ +.++ +...+...|+.++| +|+|+ |+ +...|..+.+.|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~-~~D~--------~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 66 NPENALAWLARHGNPYAAV-GFDP--------DGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CHHHHHHHHHhcCCCCceE-EECC--------cchHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4677777777777642211 1121 22356778999999 66775 55 234687776544
No 264
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=61.54 E-value=15 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=27.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
.+++++.+++-.=||.|....|.+.++.+..+ ++++.+.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i 78 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRII 78 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 46789999999999999999999999988644 3555543
No 265
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=12 Score=33.46 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=30.9
Q ss_pred HHHHHhCCCCeecEEEE--CCe--eeecCCCCHHHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv--~g~--~~~~G~~~~~~l~~~i~~ 214 (217)
...+.+.+|.|.||+-| ||+ ....|.+..+.++..+.+
T Consensus 89 ~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 89 SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKK 130 (493)
T ss_pred hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHh
Confidence 66788999999999966 676 456899888888888764
No 266
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=60.86 E-value=17 Score=27.78 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE--CCeee--ecCCC-------CHHHHHHHHH
Q 027910 146 EFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL--NGKHE--LSGGQ-------PPEVYLRAFQ 213 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv--~g~~~--~~G~~-------~~~~l~~~i~ 213 (217)
..|.+++.+.. .-.| .++.++ . ..+...+|.++|||++ +|+.+ +.|.. +.+.|+..|.
T Consensus 103 ~~l~~LA~~~~--~vkF~kVd~d~-------~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 103 SSLLCLAAEYP--AVKFCKIRASA-------T-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred HHHHHHHHHCC--CeEEEEEeccc-------h-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 56777777653 2344 444432 1 5677899999999988 67622 33332 4566666654
Q ss_pred H
Q 027910 214 V 214 (217)
Q Consensus 214 ~ 214 (217)
+
T Consensus 173 ~ 173 (175)
T cd02987 173 E 173 (175)
T ss_pred h
Confidence 3
No 267
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=60.61 E-value=35 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=28.3
Q ss_pred CCcceEEEEEeccc------CchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 10 GKKLIRIDVSSDTV------CPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 10 ~~~~v~i~~y~D~~------CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
...++-|.|+.+.. ||.|-.+.+.+.+.++..+. +..+++..+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEc
Confidence 34567777776653 99999999999999987543 566655443
No 268
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=59.71 E-value=19 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.4
Q ss_pred HHHHHHhCCCC-eecEEEE
Q 027910 176 EELKKYSANIS-GVPHFVL 193 (217)
Q Consensus 176 ~~~~a~~~gv~-g~Pt~vv 193 (217)
+...+.+.+|. ++|||++
T Consensus 78 ~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 78 NNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred chhhHhccCcccCCCEEEE
Confidence 34556788998 9999988
No 269
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=59.56 E-value=36 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=12.1
Q ss_pred HHHhCCCCe------ecEEEE--CCe
Q 027910 179 KKYSANISG------VPHFVL--NGK 196 (217)
Q Consensus 179 ~a~~~gv~g------~Pt~vv--~g~ 196 (217)
.+.+.+|.+ +|||++ +|+
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf~~Gk 119 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILFQGGK 119 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEEECCE
Confidence 344556655 999988 565
No 270
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=59.47 E-value=40 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHhCCC--CeecEEEE---CCee---eecCCCCHHHHHHHHHHHh
Q 027910 180 KYSANI--SGVPHFVL---NGKH---ELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 180 a~~~gv--~g~Pt~vv---~g~~---~~~G~~~~~~l~~~i~~~~ 216 (217)
....|+ .++|+.++ +|+. ...|..+.++|++.|+++.
T Consensus 127 ~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 127 QTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred HHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHH
Confidence 445674 69998766 4652 3579999999999988764
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=59.34 E-value=16 Score=26.78 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=26.3
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
+++-|.+|...-||+|-...+.+.++.++|.+ .++++.
T Consensus 31 k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi 68 (154)
T PRK09437 31 QRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVL 68 (154)
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEE
Confidence 34555555556799999988888888887763 345553
No 272
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=59.18 E-value=11 Score=23.44 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=15.0
Q ss_pred EEEecccCchhhhhHHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~ 35 (217)
.+|+.+.||+|....-.|.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~ 20 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLA 20 (74)
T ss_pred EEEeCCCCcchHHHHHHHH
Confidence 6788899999998665553
No 273
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=59.16 E-value=12 Score=23.44 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=19.1
Q ss_pred EEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 17 DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
..|+...||+|....-.| . ..++.+++++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L----~----~~gl~~~~~~~ 31 (71)
T cd03037 2 KLYIYEHCPFCVKARMIA----G----LKNIPVEQIIL 31 (71)
T ss_pred ceEecCCCcHhHHHHHHH----H----HcCCCeEEEEC
Confidence 368889999999755444 2 12466665544
No 274
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=58.66 E-value=27 Score=27.16 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=25.3
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
...|..|+..-||.|....+.|.++.++|+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~ 132 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP 132 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC
Confidence 355666777899999999999999998875
No 275
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=58.50 E-value=83 Score=24.29 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc-cccCcc-cchhHHH-HHHH
Q 027910 103 TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE-FLDDPN-SGLNEVH-EELK 179 (217)
Q Consensus 103 ~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~-~l~~~~-~~~~~~~-~~~~ 179 (217)
+..|.-..|++..+...+++. .--.||--.+.+.+.+++.|+....+ .-.+++ ++..-.. -.+.
T Consensus 69 fGaS~H~Ar~lL~~~~~~p~i-------------raa~NIrY~~~~v~~~~~~G~~v~~~dR~~Ep~~v~~~e~~w~i~~ 135 (181)
T COG1992 69 FGASSHTARVLLTVMKHDPDI-------------RAAINIRYSEEVVEALKDLGLAVSSFDRSKEPEEVEEKEGGWGIES 135 (181)
T ss_pred CCchHHHHHHHHHHHhhCCCc-------------eEEeeecccHHHHHHHHhcCceEEEeCcccCchhhhccccchHHHH
Confidence 567777778888777777621 12235666678899999999988777 333332 2211111 1333
Q ss_pred HHhCCCCeecEEEEC----Ce---eeecCCCCHHHHHHHHHHH
Q 027910 180 KYSANISGVPHFVLN----GK---HELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 180 a~~~gv~g~Pt~vv~----g~---~~~~G~~~~~~l~~~i~~~ 215 (217)
+.+ ...++|-++++ |+ ..+.|..+.+...++|+-+
T Consensus 136 a~~-~~~~~PDVIyd~G~~GkEpmi~v~gr~a~evv~k~l~ll 177 (181)
T COG1992 136 AFR-ELGGAPDVIYDLGGVGKEPMIRVLGRNAVEVVEKALRLL 177 (181)
T ss_pred HHH-hcCCCCCEEEeCCCCCcccEEEEeCCCHHHHHHHHHHHH
Confidence 322 23389999996 33 3468999999988877644
No 276
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=58.25 E-value=20 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=21.8
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
++-|.+|..--||.|....+.|.++.++|.
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~ 57 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLD 57 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC
Confidence 444444444458999999999998888763
No 277
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=56.98 E-value=14 Score=24.15 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=25.1
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
+|++|+=+.|+-|=.+...|.++.. +.+++++..-+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~----~~~~~l~~vDI 36 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAA----EFPFELEEVDI 36 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCT----TSTCEEEEEET
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHh----hcCceEEEEEC
Confidence 6899999999999999988876433 34556655444
No 278
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.76 E-value=15 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=26.8
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
+|.+|.-+.|+-|..+...|. +.++.++++.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~--------~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALK--------ASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHH--------HCCCCcEEEecc
Confidence 678999999999999887665 346888888775
No 279
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=54.72 E-value=53 Score=23.25 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCee---------cEE-EEC--Ce--eeecCCCCHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGV---------PHF-VLN--GK--HELSGGQPPEV 207 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~---------Pt~-vv~--g~--~~~~G~~~~~~ 207 (217)
..+.+.+.+.+++.|++-. .+.+++ .+.+..+|+.+. |+. +|+ |+ +...|..+.+.
T Consensus 65 ~d~~~~~~~~~~~~~~~~~--~l~D~~--------~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~ 134 (140)
T cd03017 65 PDSVESHAKFAEKYGLPFP--LLSDPD--------GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGH 134 (140)
T ss_pred CCCHHHHHHHHHHhCCCce--EEECCc--------cHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccch
Confidence 3467888888888887533 344432 234556777777 665 554 54 34578877777
Q ss_pred HHHHH
Q 027910 208 YLRAF 212 (217)
Q Consensus 208 l~~~i 212 (217)
+.+.+
T Consensus 135 ~~~~~ 139 (140)
T cd03017 135 AEEVL 139 (140)
T ss_pred HHHHh
Confidence 76665
No 280
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=54.15 E-value=32 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
+..++.|.+..=..||+|....=.|--++.+|.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 557999999999999999977666777888776
No 281
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=54.04 E-value=18 Score=22.52 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=14.3
Q ss_pred EEEecccCchhhhhHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l 34 (217)
..|+...||+|....-.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l 19 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVL 19 (73)
T ss_pred EEEECCCChhHHHHHHHH
Confidence 578889999999866544
No 282
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=53.73 E-value=18 Score=22.62 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=14.4
Q ss_pred EEEecccCchhhhhHHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~ 35 (217)
.+|+-..||||....-.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 2 ILYSFRRCPYAMRARMALL 20 (71)
T ss_pred EEEecCCCcHHHHHHHHHH
Confidence 5788889999998665443
No 283
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=53.69 E-value=84 Score=22.83 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCCCee------------c-EEEEC--Ce--eeecCCC
Q 027910 141 YIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGV------------P-HFVLN--GK--HELSGGQ 203 (217)
Q Consensus 141 ~i~~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv~g~------------P-t~vv~--g~--~~~~G~~ 203 (217)
.+++.+.+.+.+++.|++.. .+.++. . ..+...|+.+. | +|+|+ |+ +...|..
T Consensus 71 s~d~~~~~~~~~~~~~~~~~--~l~D~~--~------~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 71 STDKPEKLSRFAEKELLNFT--LLSDED--H------QVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred cCCCHHHHHHHHHHhCCCCe--EEECCC--c------hHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 34567888888888887533 333332 1 12234444432 4 46774 54 3457877
Q ss_pred CHHHHHHHHHHHh
Q 027910 204 PPEVYLRAFQVAA 216 (217)
Q Consensus 204 ~~~~l~~~i~~~~ 216 (217)
+.+.+..+++.+.
T Consensus 141 ~~~~~~~~~~~~~ 153 (154)
T PRK09437 141 TSNHHDVVLDYLK 153 (154)
T ss_pred cchhHHHHHHHHh
Confidence 7777777777654
No 284
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=53.37 E-value=18 Score=27.22 Aligned_cols=39 Identities=10% Similarity=-0.089 Sum_probs=28.2
Q ss_pred CcceEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..+..|.+|+ ---||.|....+.|.++.++|.. .++.+.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv 67 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVL 67 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 3455566665 56699999999999999888863 355554
No 285
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=52.32 E-value=59 Score=28.53 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHcCCCcccc---ccc-----------------Ccccc----hhHHHHHHHHHhCCCCeecEEEECCeeee
Q 027910 144 DKEFLVECARKVGVEGAAE---FLD-----------------DPNSG----LNEVHEELKKYSANISGVPHFVLNGKHEL 199 (217)
Q Consensus 144 ~~~~L~~ia~~~Gld~~~~---~l~-----------------~~~~~----~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~ 199 (217)
|.+.|++.+++.||..+.+ .+. |++++ +...+..+.++++|-..+ ++.+.+.+.+
T Consensus 99 D~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v-~IW~gDG~~y 177 (412)
T TIGR02629 99 DPKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKAL-TVWIGDGSNF 177 (412)
T ss_pred CHHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCee-EEECCCCCCC
Confidence 7888888888887755544 121 11122 234445566788999888 8888655567
Q ss_pred cCCCCH----HHHHHHHHHH
Q 027910 200 SGGQPP----EVYLRAFQVA 215 (217)
Q Consensus 200 ~G~~~~----~~l~~~i~~~ 215 (217)
+|...+ +.+...|+++
T Consensus 178 P~Q~~~~~~~~rl~esL~eI 197 (412)
T TIGR02629 178 PGQSNFTRAFERYLDAMKAV 197 (412)
T ss_pred cCccchHHHHHHHHHHHHHH
Confidence 766554 5555555554
No 286
>PLN02309 5'-adenylylsulfate reductase
Probab=52.05 E-value=30 Score=30.89 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
...+..|..|+-+-||+|....+.+.++.++|.
T Consensus 363 ~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~ 395 (457)
T PLN02309 363 NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLA 395 (457)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhc
Confidence 345678888999999999999999999988775
No 287
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=51.18 E-value=31 Score=26.60 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=31.8
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeec
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF 54 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~ 54 (217)
..++.|..++...|+.|. ..+.|.++.++|.+ .++.|.=-|.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-~gl~Vlg~p~ 65 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD-QGFVVLGFPC 65 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-CCeEEEEeec
Confidence 457888889999999996 57789999998874 3566654443
No 288
>PRK10026 arsenate reductase; Provisional
Probab=50.99 E-value=22 Score=26.27 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=26.9
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
+|.+|.-+.|+-|..+...|. ..++.++++.+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~--------~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIR--------NSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHH--------HCCCCcEEEeee
Confidence 688999999999999887665 346888888775
No 289
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=50.86 E-value=31 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..++.|..|+-+-||+|....+.+.++.++|.+
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~ 402 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG 402 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc
Confidence 456678888889999999999999999888763
No 290
>PHA03075 glutaredoxin-like protein; Provisional
Probab=50.74 E-value=30 Score=24.66 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=30.4
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeeccc
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL 56 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l 56 (217)
+-||..|.-|.||-|-..+..|.++..+|. -++|.-..|+.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~---ilrVNIlSfFs 42 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD---ILRVNILSFFS 42 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc---EEEEEeeeeec
Confidence 458899999999999999998876665553 25565555543
No 291
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=50.12 E-value=21 Score=21.26 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=14.0
Q ss_pred EEEecccCchhhhhHHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~ 35 (217)
.+|+-..||+|......+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALE 20 (71)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 4677788999997665443
No 292
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=49.91 E-value=91 Score=22.14 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=25.1
Q ss_pred EEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 15 ~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
.|++|..+.|.-|..+...|+ .+++..+++.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~--------~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLE--------EHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHH--------HcCCCcEEEEee
Confidence 589999999999999877665 245666666554
No 293
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=49.77 E-value=6.7 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=13.9
Q ss_pred cccCchhhhhHHHHHHHHHhc
Q 027910 21 DTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 21 D~~CP~cy~~~~~l~~~~~~~ 41 (217)
.|.||||.. .-....|++..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~ 21 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHC 21 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHH
Confidence 478999998 54455666543
No 294
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.77 E-value=20 Score=22.18 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=14.0
Q ss_pred EEEecccCchhhhhHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l 34 (217)
..|+.+.||+|....-.|
T Consensus 2 ~Ly~~~~~~~~~~v~~~l 19 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLL 19 (73)
T ss_pred EEEeCCCCccHHHHHHHH
Confidence 578889999999765544
No 295
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.12 E-value=19 Score=31.17 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 180 KYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 180 a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
..+.+|-+|||+++||+-.-.|-...++++..|+
T Consensus 162 vear~IMaVPtvflnGe~fg~GRmtleeilaki~ 195 (520)
T COG3634 162 VEARNIMAVPTVFLNGEEFGQGRMTLEEILAKID 195 (520)
T ss_pred HHhccceecceEEEcchhhcccceeHHHHHHHhc
Confidence 3456799999999999854578878888877665
No 296
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=47.90 E-value=11 Score=26.62 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred ccCchhhhhHHHHHHHHHhcCC-CCceeEEEeecc
Q 027910 22 TVCPWCFVGKRNLDKAIASSKD-QYDFEIRWHPFF 55 (217)
Q Consensus 22 ~~CP~cy~~~~~l~~~~~~~~~-~~~v~v~~~p~~ 55 (217)
+.||+|-..+-.| ..|+. +..++|++.+|.
T Consensus 22 f~Cp~c~~iEGlL----a~~P~l~~~ldV~rV~f~ 52 (112)
T PF11287_consen 22 FYCPHCAAIEGLL----ASFPDLRERLDVRRVDFP 52 (112)
T ss_pred EECCchHHHHhHH----hhChhhhhcccEEEeCCC
Confidence 7899999865543 33432 126889988886
No 297
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=47.67 E-value=25 Score=28.36 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
.+..|+|+-+.+-.|.+|..-..+|..+..++..+.--+|.|.-+.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN 69 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVN 69 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEc
Confidence 3458999999999999999999999888877776554566665443
No 298
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=47.54 E-value=32 Score=31.48 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHhCCCCeecEEEE---CCe--eeecCCCCHHHHHHHHHHHh
Q 027910 176 EELKKYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv---~g~--~~~~G~~~~~~l~~~i~~~~ 216 (217)
+.+.-.+.|+.|+|++++ +|+ -.+.|.-+.+.+++.|+++.
T Consensus 523 ~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 523 ITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 455667899999999988 232 23689889999999998764
No 299
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=46.87 E-value=39 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=20.9
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHH
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIA 39 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~ 39 (217)
.+..+..|+-.-||+|....+.+.+...
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~ 46 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKE 46 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHH
Confidence 3455666666999999999998877543
No 300
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=46.70 E-value=45 Score=29.05 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=27.9
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.+..+.+|+.+-|+.|....+.+.++.+.+..
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 395 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD 395 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence 56778889999999999999999999888764
No 301
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.57 E-value=19 Score=28.64 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCcceEEEEEecccCchhhhhHHHHHHHH
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAI 38 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l~~~~ 38 (217)
.....++..|+|+.||+|..++..++...
T Consensus 116 ~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 144 (244)
T COG1651 116 VRLVLREFPFLDPACPYCRRAAQAARCAA 144 (244)
T ss_pred CceEEEEeecCCCCcHHHHHHHHHHHHhc
Confidence 35578899999999999999998877653
No 302
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.53 E-value=29 Score=29.97 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=26.4
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
....+..|++|-|++|....+.+.++...+..
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~ 193 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS 193 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhcc
Confidence 45568888999999999999988888776653
No 303
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=24 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=17.0
Q ss_pred eEEEEEecccCchhhhhHHHHH
Q 027910 14 IRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 14 v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
-.+.+|+=..||||..+...+.
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~ 35 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLS 35 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHH
Confidence 3578899999999998655443
No 304
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=45.58 E-value=30 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=23.8
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
...|+++|||+ +.|..++|.+.++|++..
T Consensus 129 ~~AP~vmind~--~~~~lt~e~l~eil~~~~ 157 (160)
T COG1905 129 GQAPVVMINDD--VYGRLTPEKLEEILEKLK 157 (160)
T ss_pred ccCCEEEECCc--hhccCCHHHHHHHHHHHh
Confidence 55899999998 456689999999998764
No 305
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.70 E-value=34 Score=25.43 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=21.4
Q ss_pred EEEEecc------cCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDT------VCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~------~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|++|+-. .||||..+...| +. .+|.++.+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL----~~----~~V~~~e~DVs 39 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAIL----ES----FRVKFDERDVS 39 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHH----HH----CCCcEEEEECC
Confidence 6788888 899998866555 32 34666555544
No 306
>PHA01976 helix-turn-helix protein
Probab=44.31 E-value=24 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.1
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 136 FTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
|+.|....+.+.|..++..+|++++.|
T Consensus 35 ~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (67)
T PHA01976 35 FEADKRLPNLKTLLRLADALGVTLDWL 61 (67)
T ss_pred HHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 566766667899999999999998765
No 307
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=43.95 E-value=33 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=20.3
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
.--|.++|||+ +.+..+++.+.++|++
T Consensus 53 ~~gP~~~v~~~--~~~~~~~e~i~~il~~ 79 (80)
T cd03081 53 ACSPAAMIDGE--VHGRVDPEKFDALLAE 79 (80)
T ss_pred CCCCEEEECCE--EECCCCHHHHHHHHHc
Confidence 55899999987 3444588888888765
No 308
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=45 Score=23.20 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=26.9
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.+..|..|+-.-|+=|....|.+.++-.+|++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~ 52 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD 52 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC
Confidence 46666667889999999999999999998873
No 309
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=43.04 E-value=60 Score=20.45 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=20.5
Q ss_pred EEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 18 ~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
.|....||||....-.++. .++.+++.++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~--------~~i~~~~~~v~ 30 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE--------KGIPYELVPVD 30 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH--------HTEEEEEEEEB
T ss_pred CCCcCCChHHHHHHHHHHH--------cCCeEEEeccC
Confidence 3677899999987765542 14666666655
No 310
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=42.40 E-value=29 Score=24.40 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=24.7
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.|+-|..+...|++ .++.++++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~--------~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLED--------KGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHH--------CCCCeEEEecc
Confidence 468999999999998876652 36777777664
No 311
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.19 E-value=50 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=24.7
Q ss_pred HHHHHHhCCCCeecEEEEC--Cee-eecCCCCHHHHHHH
Q 027910 176 EELKKYSANISGVPHFVLN--GKH-ELSGGQPPEVYLRA 211 (217)
Q Consensus 176 ~~~~a~~~gv~g~Pt~vv~--g~~-~~~G~~~~~~l~~~ 211 (217)
|-....+.+|..||+|||. ..| ++.|.-+...=++.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~ 189 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEK 189 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHH
Confidence 3445788999999999993 223 67887776543333
No 312
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=45 Score=30.05 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=30.7
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEE
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW 51 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~ 51 (217)
+=.+..|+=|=|++|-...|.+++|-+.|.+..++.+--
T Consensus 385 KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAK 423 (493)
T KOG0190|consen 385 KDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAK 423 (493)
T ss_pred cceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEE
Confidence 345666777999999999999999999998755555543
No 313
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=40.13 E-value=47 Score=21.99 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHh
Q 027910 194 NGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 194 ~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
+|+..+.|+.+.++..++++++.
T Consensus 57 sGki~itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 57 SGKIVITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 69988899999999999988763
No 314
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.27 E-value=50 Score=23.24 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=12.6
Q ss_pred HHhCCCCeecEEEE
Q 027910 180 KYSANISGVPHFVL 193 (217)
Q Consensus 180 a~~~gv~g~Pt~vv 193 (217)
.++.+|+.||+||+
T Consensus 64 F~~y~I~~VPa~V~ 77 (113)
T PF09673_consen 64 FRQYNITAVPAFVV 77 (113)
T ss_pred HhhCCceEcCEEEE
Confidence 56889999999998
No 315
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=39.11 E-value=4.5e+02 Score=27.01 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=73.8
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecccCCCCCCCCCChHHHHHhhhCCcHHHHHHHHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF 90 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 90 (217)
..-.+++++.||.-|...-.-..++.+.. ....+++-+.++.-...- .|..
T Consensus 462 kNl~nlV~vIDpa~~~~~~~l~~~~~f~s---~~~P~R~G~v~~~nd~~~--d~~~------------------------ 512 (1470)
T KOG1879|consen 462 KNLFNLVFVIDPATPEDLEFLKTARNFVS---HQIPVRIGFVFIANDDDE--DGVT------------------------ 512 (1470)
T ss_pred hhheeEEEEecCCCccchHHHHHHHHHhc---CCCceEEEEEEEecCCcc--cchh------------------------
Confidence 34568999999999988877666666554 245677777776532211 1110
Q ss_pred HhcCCccccCCCCCCcHHHHHHHHHH-hhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCc
Q 027910 91 RGLGLEYNMSGLTGNTLDSHRLLYLA-GQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDP 167 (217)
Q Consensus 91 ~~~g~~~~~~~~~~~s~~a~~~~~~a-~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~ 167 (217)
.+|+ ...++.... +..|...+..++..++...-.+...+ .+.+..+... -++-..+ .+..+
T Consensus 513 -d~g~------------av~~af~yi~~~~d~~~Alk~l~~~~~~~~~~~~~~--~e~v~~~~~~-~~~~~~~~~il~~~ 576 (1470)
T KOG1879|consen 513 -DLGV------------AVLRAFNYISEESDNLTALKFLTNIYSDVRSDEYVL--VEHVKGVFEN-TLPNAKKDDILGID 576 (1470)
T ss_pred -hHHH------------HHHHHHHHHHhccChHHHHHHHHHHHhhhcccchhH--HHhhhHHHHh-hccccchhhhhccc
Confidence 0011 112333333 33455445556666655432222112 2222333333 1222222 22222
Q ss_pred -ccchhHHHHHHHHHhCCCCeecEEEECCe
Q 027910 168 -NSGLNEVHEELKKYSANISGVPHFVLNGK 196 (217)
Q Consensus 168 -~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~ 196 (217)
.+..........-.++|+...|.+++||.
T Consensus 577 s~~d~~~~~~~~fv~~lGl~~~p~vL~NG~ 606 (1470)
T KOG1879|consen 577 STYDEGRKAGFSFVQELGLDSLPSVLLNGE 606 (1470)
T ss_pred cchhhcchHHHHHHHHhCCCccCeeeECCe
Confidence 23333444566667999999999999998
No 316
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=38.70 E-value=1.7e+02 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHhCCC-----CeecEEEEC-CeeeecCCCCHHHHHHHHHHH
Q 027910 170 GLNEVHEELKKYSANI-----SGVPHFVLN-GKHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 170 ~~~~~~~~~~a~~~gv-----~g~Pt~vv~-g~~~~~G~~~~~~l~~~i~~~ 215 (217)
...+.++.+.+.+.++ +|+|+|++. |+....+..-.+.+.+.++++
T Consensus 49 l~~il~N~~ia~~~~~P~CQDTG~~~~fvkvG~~~~~~~~l~~~i~egVr~a 100 (297)
T COG1951 49 LLQILENSRIAAKENRPICQDTGIPIFFVKVGQRWPTGGELEEALNEGVREA 100 (297)
T ss_pred HHHHHHHHHHHHhcCCCcccCCCceEEEEEcCCcccCCCcHHHHHHHHHHHh
Confidence 4467777777777665 999999995 442223554556666655543
No 317
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.32 E-value=44 Score=27.57 Aligned_cols=53 Identities=9% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCcccc--cccCcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910 147 FLVECARKVGVEGAAE--FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ 203 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~--~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~ 203 (217)
.++.|.+..++-.++= .|++ ++++.++.-... +...-..|-++|.|+| |.|++
T Consensus 152 ~VR~ilesf~V~v~ERDVSMd~-~fr~EL~~~lg~--~~~~~~LPrVFV~Gry-IGgae 206 (281)
T KOG2824|consen 152 AVRAILESFRVKVDERDVSMDS-EFREELQELLGE--DEKAVSLPRVFVKGRY-IGGAE 206 (281)
T ss_pred HHHHHHHhCceEEEEecccccH-HHHHHHHHHHhc--ccccCccCeEEEccEE-eccHH
Confidence 4555666666543322 2222 234334333333 4466779999999995 67765
No 318
>PF10120 Aldolase_2: Putative aldolase; InterPro: IPR019293 This family of proteins have no known function. In many cases they represent a domain C-terminal to a phosphomethylpyrimidine kinase domain or a HTH DNA-binding domain.; PDB: 2PHP_A 2PB9_A.
Probab=38.25 E-value=65 Score=24.58 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc-cccCc-ccc--hhHHHHHH
Q 027910 103 TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE-FLDDP-NSG--LNEVHEEL 178 (217)
Q Consensus 103 ~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~-~l~~~-~~~--~~~~~~~~ 178 (217)
+..|....++++.|++.+++ ..-..||--.+.+.+.++++|+....+ .-.++ +++ .-+.-..+
T Consensus 62 fGaS~H~A~~lL~a~~~~p~-------------iRsaiNiry~~~i~~~l~~~g~~v~~~dr~~ep~~~~eg~tm~w~i~ 128 (170)
T PF10120_consen 62 FGASSHVARILLTARKFDPE-------------IRSAINIRYDEEIIEALEELGLKVSEFDRSEEPEEVKEGGTMPWGIE 128 (170)
T ss_dssp ETS-CHHHHHHHHHHCC-TT---------------EEEEEE--HHHHHHHHCTTSEEEE--CCCS-CCCHTT-HHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhCCC-------------ceEEEEEecCHHHHHHHHHCCCeEEEECCCCCCcccccccchHHHHH
Confidence 45666667888888877762 112345666788888999999988877 33333 333 12333344
Q ss_pred HHHhCCCCeecEEEEC----Ce---eeecCCCCHHHHHHHH
Q 027910 179 KKYSANISGVPHFVLN----GK---HELSGGQPPEVYLRAF 212 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv~----g~---~~~~G~~~~~~l~~~i 212 (217)
.+.+. ..++|-++++ |+ ..+.|..+.+...+++
T Consensus 129 ~a~~~-~~~~PdvIyd~G~~GkEp~i~v~g~~~~evv~kv~ 168 (170)
T PF10120_consen 129 EAFRE-LGEVPDVIYDRGGWGKEPMIYVFGRDPVEVVEKVL 168 (170)
T ss_dssp HHHHC-CTS-ECEEEE--BCTB--EEEEEESSHHHHHHHHH
T ss_pred HHHHh-cCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHH
Confidence 44322 2789999995 32 2467887777666654
No 319
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=38.23 E-value=25 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=19.9
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 136 FTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
|+.|+..-+.+.+..+++.+|++.+.|
T Consensus 32 ~e~g~~~~~~~~l~~i~~~~~v~~~~l 58 (64)
T PF12844_consen 32 IENGKRKPSVSTLKKIAEALGVSLDEL 58 (64)
T ss_dssp HHTTSS--BHHHHHHHHHHHTS-HHHH
T ss_pred HHCCCcCCCHHHHHHHHHHhCCCHHHH
Confidence 556665557899999999999998876
No 320
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=37.48 E-value=57 Score=21.17 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=25.7
Q ss_pred HHHhCCCCeecEEEECC------eeeecCCCCHHHHHHHHH
Q 027910 179 KKYSANISGVPHFVLNG------KHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 179 ~a~~~gv~g~Pt~vv~g------~~~~~G~~~~~~l~~~i~ 213 (217)
...+.|. -+|.+.++| ...+.+.-+.+.|.+.|+
T Consensus 42 l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 42 LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred HHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 4447774 799999998 666778888898888775
No 321
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=37.10 E-value=1.1e+02 Score=23.99 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=40.4
Q ss_pred cCcccCCcceEEEEEecccCch-hhhhHHHHHHHHHhcCCCCceeEEEeecccCCCC
Q 027910 5 VSSSAGKKLIRIDVSSDTVCPW-CFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP~-cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~~ 60 (217)
..+.+-..++.|.+|.=..||- |=.....|.++++++....+..|....+.++|+.
T Consensus 60 ~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPer 116 (207)
T COG1999 60 FTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPER 116 (207)
T ss_pred eeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCC
Confidence 3444557788898888888884 7777777888888776444566666677888864
No 322
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=37.08 E-value=14 Score=22.65 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=8.2
Q ss_pred EEecccCchhhh
Q 027910 18 VSSDTVCPWCFV 29 (217)
Q Consensus 18 ~y~D~~CP~cy~ 29 (217)
+|.|+.||-|+.
T Consensus 4 ~Fm~VkCp~C~~ 15 (55)
T PF01667_consen 4 YFMDVKCPGCYN 15 (55)
T ss_dssp -EEEEE-TTT-S
T ss_pred cEEEEECCCCCC
Confidence 689999999995
No 323
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=37.00 E-value=86 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCee
Q 027910 144 DKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKH 197 (217)
Q Consensus 144 ~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~ 197 (217)
.+..+.+++++.++|++.. .+.|.. .|.+.|.+.|+. |..+..|..
T Consensus 107 ~~gm~~~~~~~~~iD~~~s~~VGD~~------~Dlq~a~n~gi~--~~~~~~~~~ 153 (181)
T COG0241 107 KPGMLLSALKEYNIDLSRSYVVGDRL------TDLQAAENAGIK--GVLVLTGIG 153 (181)
T ss_pred ChHHHHHHHHHhCCCccceEEecCcH------HHHHHHHHCCCC--ceEEEcCcc
Confidence 4688899999999998877 666643 899999999999 777887663
No 324
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.74 E-value=1.7e+02 Score=21.39 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEECCe
Q 027910 139 GKYIGDKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLNGK 196 (217)
Q Consensus 139 g~~i~~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~ 196 (217)
|.+. .++.+.+.+.+.+.|.-.+ .+.. .....+.+-.+..++.|+.+.| ++++|.
T Consensus 36 G~~v-~~e~~v~aa~~~~adiVglS~l~~-~~~~~~~~~~~~l~~~gl~~~~-vivGG~ 91 (134)
T TIGR01501 36 GVLS-PQEEFIKAAIETKADAILVSSLYG-HGEIDCKGLRQKCDEAGLEGIL-LYVGGN 91 (134)
T ss_pred CCCC-CHHHHHHHHHHcCCCEEEEecccc-cCHHHHHHHHHHHHHCCCCCCE-EEecCC
Confidence 4554 3556666666655443322 2222 2233455556666777887655 677763
No 325
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=36.46 E-value=46 Score=25.51 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=28.4
Q ss_pred CcceEEEEEe-cccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 11 KKLIRIDVSS-DTVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 11 ~~~v~i~~y~-D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
..+..|.+|+ ---||.|-...+.+.++.++|.. .+++|.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~-~gv~vi 69 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK-LGVEVY 69 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh-cCCcEE
Confidence 4456666666 77899999988999888888763 355553
No 326
>PRK10853 putative reductase; Provisional
Probab=36.33 E-value=40 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.4
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|.-+.|+-|..+...|. +.++.++++.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~--------~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE--------AQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH--------HcCCCcEEeehc
Confidence 78999999999999887665 246788877664
No 327
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=36.28 E-value=90 Score=22.49 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCe
Q 027910 143 GDKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISG 187 (217)
Q Consensus 143 ~~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g 187 (217)
.+++.+..+++++|+++++. .++|. . .+.+.|.+.|+..
T Consensus 134 p~~~~~~~~~~~~~~~p~~~~~vgD~-----~-~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 134 PDPDAYRRALEKLGIPPEEILFVGDS-----P-SDVEAAKEAGIKT 173 (176)
T ss_dssp TSHHHHHHHHHHHTSSGGGEEEEESS-----H-HHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCCcceEEEEeCC-----H-HHHHHHHHcCCeE
Confidence 35677777777778877776 55543 3 5666677766643
No 328
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=36.20 E-value=55 Score=17.97 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=19.2
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCccc
Q 027910 136 FTQGKYIGDKEFLVECARKVGVEGAA 161 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld~~~ 161 (217)
|..|....+.+.+..+++.+|++++.
T Consensus 30 ~~~~~~~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 30 IENGKRKPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred HHCCCCCCCHHHHHHHHHHhCCChhh
Confidence 44555444788899999999998764
No 329
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=36.08 E-value=56 Score=20.67 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE
Q 027910 144 DKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL 193 (217)
Q Consensus 144 ~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv 193 (217)
++..+..+++.+|+++++. .+.| .+..|...|++.|+ .++.|
T Consensus 6 ~p~~~~~a~~~~~~~~~~~~~VGD-----~~~~Di~~a~~~G~---~~ilV 48 (75)
T PF13242_consen 6 SPGMLEQALKRLGVDPSRCVMVGD-----SLETDIEAAKAAGI---DTILV 48 (75)
T ss_dssp SHHHHHHHHHHHTSGGGGEEEEES-----STTTHHHHHHHTTS---EEEEE
T ss_pred cHHHHHHHHHHcCCCHHHEEEEcC-----CcHhHHHHHHHcCC---cEEEE
Confidence 5677888888999998877 5555 35678888888877 44555
No 330
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=35.71 E-value=68 Score=24.30 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.2
Q ss_pred cCcccCCcceEEEEEecccCc-hhhhhHHHHHHHHHhcCCCCceeEEEeecccCCC
Q 027910 5 VSSSAGKKLIRIDVSSDTVCP-WCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59 (217)
Q Consensus 5 ~~~~~~~~~v~i~~y~D~~CP-~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~l~~~ 59 (217)
++...-..++.|.+|.=..|| -|-.....|.++.+++..+ +..+.+..++++|.
T Consensus 45 ~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 45 VTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPE 99 (174)
T ss_dssp EEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTT
T ss_pred ecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCC
Confidence 334444568889999999996 5888888888888877654 34455555677775
No 331
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=35.33 E-value=61 Score=21.33 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.2
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.-.|.-+|||+ .+.|. +.++|.+.|.
T Consensus 44 ~~~pFAlVnG~-~V~A~-t~eeL~~kI~ 69 (78)
T PF07293_consen 44 AKKPFALVNGE-IVAAE-TAEELLEKIK 69 (78)
T ss_pred CCCccEEECCE-EEecC-CHHHHHHHHH
Confidence 44788899999 67777 4555554444
No 332
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=35.16 E-value=52 Score=26.60 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhCCCCe--ecEEEECCeeeecCCCCHHHHHHHHHHHhC
Q 027910 170 GLNEVHEELKKYSANISG--VPHFVLNGKHELSGGQPPEVYLRAFQVAAN 217 (217)
Q Consensus 170 ~~~~~~~~~~a~~~gv~g--~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~~ 217 (217)
++-..++...+..+|..| ||-.||||+.-..|+ ++..+.++|+....
T Consensus 94 ~enTeRQ~aY~~a~g~~~vyTPQavvnGr~~~~Ga-d~~~i~~~i~a~~~ 142 (261)
T COG5429 94 KENTERQRAYARAFGARGVYTPQAVVNGRVHANGA-DPGAIEDAIAAMAR 142 (261)
T ss_pred hhhhHHHHHHHHhhccCCCCCchheeechhhhcCC-CHHHHHHHHHHhhc
No 333
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=35.11 E-value=65 Score=18.92 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 133 LGYFTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 133 ~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
+++|.....+ +.+.+.+++..+||+...+
T Consensus 16 e~~f~~~~~P-~~~~~~~la~~~~l~~~qV 44 (59)
T cd00086 16 EKEFEKNPYP-SREEREELAKELGLTERQV 44 (59)
T ss_pred HHHHHhCCCC-CHHHHHHHHHHHCcCHHHH
Confidence 4444444444 6789999999999987765
No 334
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=34.93 E-value=86 Score=22.26 Aligned_cols=32 Identities=9% Similarity=-0.041 Sum_probs=27.1
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcC
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSK 42 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~ 42 (217)
..++.|.-|+..-||-|....|.+.++.++|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~ 44 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS 44 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc
Confidence 45667777777999999999999999998875
No 335
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=34.91 E-value=61 Score=28.99 Aligned_cols=35 Identities=3% Similarity=0.128 Sum_probs=26.3
Q ss_pred HhCCCCeecEEEE--CCe---eeec-CCCCHHHHHHHHHHH
Q 027910 181 YSANISGVPHFVL--NGK---HELS-GGQPPEVYLRAFQVA 215 (217)
Q Consensus 181 ~~~gv~g~Pt~vv--~g~---~~~~-G~~~~~~l~~~i~~~ 215 (217)
.+.+|.++|||++ +|. ..+. |..+.+.|...|+.+
T Consensus 422 ~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 422 QELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 5789999999987 443 2344 578899998888764
No 336
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=34.73 E-value=88 Score=23.12 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=25.6
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
.++.|.-|+-.-||-|-...|.|.++.+++++
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~ 54 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKN 54 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCC
Confidence 44556666668999999999999999887763
No 337
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=34.32 E-value=46 Score=25.48 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHcCCCcccc---cccCcccchhHHHHHHHHHh
Q 027910 142 IGDKEFLVECARKVGVEGAAE---FLDDPNSGLNEVHEELKKYS 182 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~---~l~~~~~~~~~~~~~~~a~~ 182 (217)
++.-..++++|++.|++..+| +=.+|++...+.........
T Consensus 29 vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~ 72 (179)
T COG1102 29 VSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK 72 (179)
T ss_pred eeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 555678899999999999999 45578888777776655443
No 338
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=34.17 E-value=91 Score=27.86 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=36.3
Q ss_pred cCCcceEEEEEecccCchhhhhH---------HHHHHHHHhcCCCCceeEEEeecccC
Q 027910 9 AGKKLIRIDVSSDTVCPWCFVGK---------RNLDKAIASSKDQYDFEIRWHPFFLN 57 (217)
Q Consensus 9 ~~~~~v~i~~y~D~~CP~cy~~~---------~~l~~~~~~~~~~~~v~v~~~p~~l~ 57 (217)
....|..|.+|.-+.||+.++.. ..+++.......+.+..+.|+||+-+
T Consensus 408 ~~~gp~iVlffapp~yP~n~L~~~~~~dq~l~~~i~~~~~~~~e~~G~t~~~~~~Fpg 465 (553)
T COG4187 408 GLSGPAIVLFFAPPHYPHNTLRVASGNDQLLHNAIKEAAAGLGEDPGETLIEKPFFPG 465 (553)
T ss_pred cccCCeEEEEecCCCCCcchhcccCcchHHHHHHHHHHHHHhhhccCceeEEeeccCc
Confidence 45667889999999999988754 33444555566677899999998743
No 339
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=34.08 E-value=61 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=19.0
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
..-|+++|||+ +.+..+++.+.++++
T Consensus 45 ~~gP~v~V~~~--~~~~~t~~~i~~~~~ 70 (72)
T cd03082 45 ERAPAALVGQR--PVDGATPAAVAAAVE 70 (72)
T ss_pred CCCCeEEECCE--EeCCcCHHHHHHHHh
Confidence 45799999998 345557777777665
No 340
>PRK11700 hypothetical protein; Provisional
Probab=34.02 E-value=89 Score=24.27 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCcccc-------cccCcccchhHHHHHH----HHHhCCCCeecEEEEC
Q 027910 146 EFLVECARKVGVEGAAE-------FLDDPNSGLNEVHEEL----KKYSANISGVPHFVLN 194 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~-------~l~~~~~~~~~~~~~~----~a~~~gv~g~Pt~vv~ 194 (217)
..|..++..+|||...+ ..++.++.++.++... ...+..|+|.|-.+|.
T Consensus 22 ~ki~~la~~L~ldl~~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~ 81 (187)
T PRK11700 22 QKIQELADRLGLDLSQLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFE 81 (187)
T ss_pred HHHHHHHHHhCCCcccccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEE
Confidence 45677888899887766 4556666665555543 3356789999988883
No 341
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=33.84 E-value=33 Score=20.09 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=19.3
Q ss_pred hcCCCCCCHHHHHHHHHHcCCCccc
Q 027910 137 TQGKYIGDKEFLVECARKVGVEGAA 161 (217)
Q Consensus 137 ~~g~~i~~~~~L~~ia~~~Gld~~~ 161 (217)
..|...-+.+.+..++..+|++++.
T Consensus 30 ~~g~~~~~~~~~~~ia~~l~~~~~~ 54 (55)
T PF01381_consen 30 ENGKRNPSLDTLKKIAKALGVSPEY 54 (55)
T ss_dssp HTTSSTSBHHHHHHHHHHHTSEHHH
T ss_pred hcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 4455555789999999999998764
No 342
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=33.67 E-value=79 Score=23.83 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=34.4
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCC-ceeEEEeec
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQY-DFEIRWHPF 54 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~-~v~v~~~p~ 54 (217)
..++...+|+=--||=|..+.|.|.++.++..++. .++|+|...
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~ 76 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS 76 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEec
Confidence 45788888888999999999999999988776532 477776543
No 343
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=33.59 E-value=48 Score=23.15 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=24.2
Q ss_pred EEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEeecc
Q 027910 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF 55 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~p~~ 55 (217)
|.+|+-+.|+-|..+...|+ ..++.++++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~--------~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLE--------EAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHH--------HCCCCeEEEecc
Confidence 46899999999999877664 236777777664
No 344
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=33.27 E-value=53 Score=23.40 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=11.2
Q ss_pred HHHHHHcCCCcccccccCcccchhHHHHHH
Q 027910 149 VECARKVGVEGAAEFLDDPNSGLNEVHEEL 178 (217)
Q Consensus 149 ~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~ 178 (217)
.+.|+..|+|-+++ +.+.++++..+.++-
T Consensus 36 ~~yA~~~glDl~~L-L~d~~YKE~~R~~mi 64 (116)
T PF04275_consen 36 REYAEAHGLDLDRL-LSDRAYKEQYRPDMI 64 (116)
T ss_dssp HHHHHTTT--------------SSHHHHHH
T ss_pred HHHHHHhCcCHHHH-hcCcchHHHHHHHHH
Confidence 34688999998875 666677777776544
No 345
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=33.16 E-value=1.6e+02 Score=20.78 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=37.2
Q ss_pred CcceEEEEEecccCchhhhhHHHHHHHHHhcCCCCceeEEEe
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH 52 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~~~~v~v~~~ 52 (217)
+.-..|..|.+.-.|--|.+.+.|+++.+++....++.++|.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWI 60 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWI 60 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEE
Confidence 346789999999999999999999999998887678999985
No 346
>PTZ00445 p36-lilke protein; Provisional
Probab=33.11 E-value=56 Score=26.03 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCee
Q 027910 149 VECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGV 188 (217)
Q Consensus 149 ~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~ 188 (217)
+.+.++.|+++++. .++|. .++.+.|+++|+.++
T Consensus 168 e~ll~~~gl~peE~LFIDD~------~~NVeaA~~lGi~ai 202 (219)
T PTZ00445 168 KQVCSDFNVNPDEILFIDDD------MNNCKNALKEGYIAL 202 (219)
T ss_pred HHHHHHcCCCHHHeEeecCC------HHHHHHHHHCCCEEE
Confidence 88999999999998 66664 567788889998763
No 347
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=33.00 E-value=49 Score=19.59 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=20.3
Q ss_pred HHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 134 GYFTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 134 a~~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
.+|..+..+ +.+...++|..+||+...+
T Consensus 17 ~~f~~~~~p-~~~~~~~la~~l~l~~~~V 44 (57)
T PF00046_consen 17 EYFQENPYP-SKEEREELAKELGLTERQV 44 (57)
T ss_dssp HHHHHSSSC-HHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHhccc-ccccccccccccccccccc
Confidence 334445445 5788999999999998765
No 348
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=32.58 E-value=89 Score=25.67 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCcccc
Q 027910 122 DKQHNLAEELFLGYFTQGK-YIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 122 ~~~~~~~~al~~a~~~~g~-~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
+....+++.+++..|.||. +....+.|..||.-+|++..+|
T Consensus 127 ~l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df 168 (267)
T PRK09430 127 DLLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQF 168 (267)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3455667888999999984 4556789999999999998777
No 349
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.99 E-value=74 Score=18.47 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCcccc--cccCc-ccchhHHHHHH
Q 027910 148 LVECARKVGVEGAAE--FLDDP-NSGLNEVHEEL 178 (217)
Q Consensus 148 L~~ia~~~Gld~~~~--~l~~~-~~~~~~~~~~~ 178 (217)
|.+||+.+|++..-. .++++ .+.+..++...
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI~ 35 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGPPRVSEETRERIL 35 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTCSSSTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHH
Confidence 688999999998877 56643 34444444433
No 350
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=31.94 E-value=16 Score=21.09 Aligned_cols=7 Identities=43% Similarity=1.236 Sum_probs=5.2
Q ss_pred Cchhhhh
Q 027910 24 CPWCFVG 30 (217)
Q Consensus 24 CP~cy~~ 30 (217)
||||...
T Consensus 1 CP~C~~k 7 (43)
T PF03470_consen 1 CPFCPGK 7 (43)
T ss_pred CCCCCCC
Confidence 8888763
No 351
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=31.75 E-value=49 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.685 Sum_probs=16.8
Q ss_pred cccCchhhhhHHHHHHHHHhcCCCCc-eeEEEeec
Q 027910 21 DTVCPWCFVGKRNLDKAIASSKDQYD-FEIRWHPF 54 (217)
Q Consensus 21 D~~CP~cy~~~~~l~~~~~~~~~~~~-v~v~~~p~ 54 (217)
--.||||+. +++++|.+++. +.|+...+
T Consensus 151 g~l~p~~~~------~L~~~y~Gd~~~~~V~r~~~ 179 (358)
T PF08298_consen 151 GELCPWCRK------RLLEEYGGDIEKFRVERLYF 179 (358)
T ss_pred CCcCHHHHH------HHHHHhCCCccEEEEEEEcc
Confidence 358999973 34467776553 55554433
No 352
>PRK13669 hypothetical protein; Provisional
Probab=31.58 E-value=78 Score=20.86 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=18.0
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.-.|.-+|||+ .+.|. ++|+|.+.|.
T Consensus 44 ~~~~FAlVng~-~V~a~-t~eeL~~kI~ 69 (78)
T PRK13669 44 SEGLFALVNGE-VVEGE-TPEELVENIY 69 (78)
T ss_pred ccCceEEECCe-EeecC-CHHHHHHHHH
Confidence 44788899999 67777 5555555554
No 353
>PF05369 MtmB: Monomethylamine methyltransferase MtmB; InterPro: IPR008031 Monomethylamine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrrolysine, encoded by the termination codon UAG []. The structure of the enzyme reveals a homohexamer comprised of individual subunits with a TIM barrel fold. MtmB initiates the metabolism of monomethylamine by catalysing the transfer of the methyl group from monomethylamine to the corrinoid cofactor of MtmC.; GO: 0008168 methyltransferase activity
Probab=30.31 E-value=1.7e+02 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCccccCCCCC
Q 027910 83 IARMTEVFRGLGLEYNMSGLTG 104 (217)
Q Consensus 83 ~~~~~~~a~~~g~~~~~~~~~~ 104 (217)
+.....++++||+.|+ +.++|
T Consensus 32 ~~k~~eL~~kY~I~~d-~efvP 52 (457)
T PF05369_consen 32 PQKAKELKKKYGIKFD-GEFVP 52 (457)
T ss_pred chHHHHHHHHhCCccC-CCcCC
Confidence 3345567889999996 34444
No 354
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=30.28 E-value=42 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=20.9
Q ss_pred eecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 187 GVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 187 g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
--|++.|||+ +-|..+++.+.++|++++
T Consensus 118 ~aP~v~V~~~--~y~~vt~e~v~~il~~lk 145 (145)
T PF01257_consen 118 QAPVVMVDGE--WYGNVTPEKVDEILEELK 145 (145)
T ss_dssp GSSEEEECCC--EEESSSCCHHHHHHHHH-
T ss_pred CCCEEEECCE--EECCCCHHHHHHHHHhcC
Confidence 3799999997 455557788888888763
No 355
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=30.18 E-value=75 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=19.6
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.+-=|.||||+ .+.|..|.+.+...++
T Consensus 75 ~SCHT~VI~Gy-~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 75 QSCHTAVINGY-YVEGHVPAEAIARLLA 101 (149)
T ss_pred ccccEEEEcCE-EEeccCCHHHHHHHHh
Confidence 34457888886 5788888888777765
No 356
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=29.92 E-value=37 Score=25.16 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=13.1
Q ss_pred ceEEEEEe---cccCchhhhh
Q 027910 13 LIRIDVSS---DTVCPWCFVG 30 (217)
Q Consensus 13 ~v~i~~y~---D~~CP~cy~~ 30 (217)
.+.+.+|+ +..||||+.-
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~ 35 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSP 35 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCCh
Confidence 45666666 4899999873
No 357
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=29.82 E-value=2.7e+02 Score=24.25 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHcCCCcccc---cc----------c--Ccccc----hhHHHHHHHHHhCCCCeecEEEECCeeeecCCC
Q 027910 143 GDKEFLVECARKVGVEGAAE---FL----------D--DPNSG----LNEVHEELKKYSANISGVPHFVLNGKHELSGGQ 203 (217)
Q Consensus 143 ~~~~~L~~ia~~~Gld~~~~---~l----------~--~~~~~----~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~ 203 (217)
.+.+.+.+.+++.||....+ .+ . +++++ +.+++..+.|.++|...+ ++.+...+...|..
T Consensus 69 ~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I-~iW~~DG~~~~g~~ 147 (378)
T TIGR02635 69 EDYEELARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDI-SLWLADGTNYPGQD 147 (378)
T ss_pred cCHHHHHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeE-EEecCCcCcCCccc
Confidence 45777888888888766543 11 1 22222 234455666777766544 44443223556655
Q ss_pred CHHH
Q 027910 204 PPEV 207 (217)
Q Consensus 204 ~~~~ 207 (217)
.+..
T Consensus 148 ~~~~ 151 (378)
T TIGR02635 148 DFRS 151 (378)
T ss_pred CHHH
Confidence 5544
No 358
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=28.99 E-value=3.2e+02 Score=23.84 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCcccc----------cccCcccchhHH-------HH-HHHHHhCCCCeecEEEE---CCeee--ecC
Q 027910 145 KEFLVECARKVGVEGAAE----------FLDDPNSGLNEV-------HE-ELKKYSANISGVPHFVL---NGKHE--LSG 201 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~----------~l~~~~~~~~~~-------~~-~~~a~~~gv~g~Pt~vv---~g~~~--~~G 201 (217)
.++-.++++.+|+|+-.+ .+.+.+-.+.+. .. .+.-.+.||.-.|.+|| +|.|- |.-
T Consensus 196 ~~va~eF~~~~~IDPWlInp~f~~c~~vdF~~~~G~e~lA~~Vd~~L~kir~KY~eYgI~e~PfViVKADaGTYGMGImt 275 (403)
T TIGR02049 196 QEVASEFAKLIGIDPWLINPYFEKCDGIDFDDREGEDALATAVDQVLSKTQKKYEEYGIHTQPYVIVKADAGTYGMGIMT 275 (403)
T ss_pred HHHHHHHHHHhCCCcccccHhhhccCCcCCCccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCCceEEE
Confidence 356667788889988654 122222222222 22 22346899999999999 45542 233
Q ss_pred CCCHHHHHHHHHH
Q 027910 202 GQPPEVYLRAFQV 214 (217)
Q Consensus 202 ~~~~~~l~~~i~~ 214 (217)
..+.+++...=++
T Consensus 276 v~~~~ev~~LNrK 288 (403)
T TIGR02049 276 ATSGEEVLGLNRK 288 (403)
T ss_pred ecCHHHHHHhhhh
Confidence 4556666654443
No 359
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=28.40 E-value=82 Score=23.92 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=8.7
Q ss_pred CCCeecEEEE---CCeeee
Q 027910 184 NISGVPHFVL---NGKHEL 199 (217)
Q Consensus 184 gv~g~Pt~vv---~g~~~~ 199 (217)
|..|.|+.++ +|+...
T Consensus 99 ~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp S---SSEEEEE-TTS-EEE
T ss_pred CCCCCCceEEECCCCCeee
Confidence 7789999988 576333
No 360
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=28.27 E-value=1e+02 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
.-.|.+.||++ +.|..+++.+.++|++++
T Consensus 127 ~~aP~~~in~~--~~~~lt~~~~~~il~~~~ 155 (156)
T PRK05988 127 ACSPAAMLDGE--VHGRLDPQRLDALLAEAR 155 (156)
T ss_pred CCCCeEEECCE--EeCCCCHHHHHHHHHHhh
Confidence 45899999998 466668899999998765
No 361
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=28.17 E-value=2.3e+02 Score=23.29 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=25.9
Q ss_pred cceEEEEEecccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
....|+.+|++.+|-|.+....|..+.++|+.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~ 177 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE 177 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc
Confidence 35678888999999999999999999999985
No 362
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.02 E-value=2.5e+02 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHcCCCcccc
Q 027910 142 IGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~ 162 (217)
.++++...++++++|+|.=..
T Consensus 152 ~T~pe~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 152 KTEPEKVKDFVERTGCDMLAV 172 (283)
T ss_pred cCCHHHHHHHHHHhCcCeeeh
Confidence 578899999999999985444
No 363
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=27.77 E-value=1.1e+02 Score=23.42 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.1
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHHHh
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
.-.|.+.|||+ +.|..+++.+.++|++..
T Consensus 140 ~~AP~~~Vn~~--~~~~lt~e~v~~il~~~~ 168 (169)
T PRK07571 140 GIAPAVVFDGK--VAGKQTPESVLEKVQGWL 168 (169)
T ss_pred CCCCeEEECCE--EeCCCCHHHHHHHHHHHh
Confidence 34799999998 466668899999988764
No 364
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=27.20 E-value=2.4e+02 Score=20.34 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=31.8
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCcccccccCcccchhHHHHHHHHHhCCC----CeecEEEECC
Q 027910 136 FTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANI----SGVPHFVLNG 195 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld~~~~~l~~~~~~~~~~~~~~~a~~~gv----~g~Pt~vv~g 195 (217)
+..|..+ ..++++|..+|+++. .+++..++-.+.|+ .|..+||=.+
T Consensus 29 l~pGdkL---PSvRelA~~~~VNpn-----------Tv~raY~eLE~eG~i~t~rg~G~fV~~~ 78 (125)
T COG1725 29 LKPGDKL---PSVRELAKDLGVNPN-----------TVQRAYQELEREGIVETKRGKGTFVTED 78 (125)
T ss_pred cCCCCCC---CcHHHHHHHhCCCHH-----------HHHHHHHHHHHCCCEEEecCeeEEEcCC
Confidence 4445444 557899999999877 35555666666665 7888888754
No 365
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=27.18 E-value=1.2e+02 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=12.7
Q ss_pred ecEEEECCeeeecCCCCHHHHHHH
Q 027910 188 VPHFVLNGKHELSGGQPPEVYLRA 211 (217)
Q Consensus 188 ~Pt~vv~g~~~~~G~~~~~~l~~~ 211 (217)
-|.++|||+++-.|......+-+.
T Consensus 68 YPlV~i~~eiV~EGnp~LK~I~~~ 91 (93)
T PF07315_consen 68 YPLVVINDEIVAEGNPQLKDIYEE 91 (93)
T ss_dssp SSEEEETTEEEEESS--HHHHHHH
T ss_pred cceEEECCEEEecCCccHHHHHHh
Confidence 577777777555666554444333
No 366
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=27.14 E-value=46 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.655 Sum_probs=13.3
Q ss_pred ecccCchhhhhHHHHHHHH
Q 027910 20 SDTVCPWCFVGKRNLDKAI 38 (217)
Q Consensus 20 ~D~~CP~cy~~~~~l~~~~ 38 (217)
.+.+|+|||.-.......+
T Consensus 105 a~~LC~~Cy~kV~ket~ei 123 (176)
T KOG4080|consen 105 AHTLCDYCYAKVHKETSEI 123 (176)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4679999998765554443
No 367
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=27.13 E-value=1.2e+02 Score=17.53 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 133 LGYFTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 133 ~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
...|..+..+ +.+.+.+++..+|++...+
T Consensus 16 ~~~f~~~~~P-~~~~~~~la~~~~l~~~qV 44 (56)
T smart00389 16 EKEFQKNPYP-SREEREELAAKLGLSERQV 44 (56)
T ss_pred HHHHHhCCCC-CHHHHHHHHHHHCcCHHHH
Confidence 4445555555 6889999999999987654
No 368
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=26.77 E-value=2.6e+02 Score=24.72 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc-cccCc-ccchh----HHHH
Q 027910 103 TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE-FLDDP-NSGLN----EVHE 176 (217)
Q Consensus 103 ~~~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~-~l~~~-~~~~~----~~~~ 176 (217)
+..|....|++..+.+.+++. .-..||.-.+.+.+.+++.|++...+ .-+.| +++.. +.=.
T Consensus 336 fg~s~h~a~~ll~~~~~~p~~-------------r~~~ni~y~~~~~~~~~~~~~~~~~~d~~~~p~~~~~~e~~t~~w~ 402 (448)
T PRK08573 336 FGASDHLARAILTAMKKDPEI-------------RSAMNIKYSEELVEKAKSLGYTVAYIDRREEPEEVKAREGASIPWI 402 (448)
T ss_pred eCCcHHHHHHHHHHHhhCCCc-------------eEEEEecCCHHHHHHHHHcCCeEEEEcCCCCchhhhhccccchhHH
Confidence 355666667777777766521 12346666788899999999988776 22222 23221 0001
Q ss_pred HHHHHhCCCCeecEEEEC----Ce---eeecCCCCHHHHHHHH
Q 027910 177 ELKKYSANISGVPHFVLN----GK---HELSGGQPPEVYLRAF 212 (217)
Q Consensus 177 ~~~a~~~gv~g~Pt~vv~----g~---~~~~G~~~~~~l~~~i 212 (217)
...+.+ ...++|-++++ |+ ..+.|..+.++..+++
T Consensus 403 ~~~a~~-~~~~~pdvi~d~g~~g~Ep~i~v~g~~~~~v~~~~~ 444 (448)
T PRK08573 403 IEEAYK-QTGRRPDIIYDLGDWGKEPMIRILGRTPVEVVEKLL 444 (448)
T ss_pred HHHHHH-hcCCCCeEEEECCCCCcCcEEEEECCCHHHHHHHHH
Confidence 222211 13679999995 22 2468887777665554
No 369
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=26.31 E-value=1.6e+02 Score=23.36 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHcCCCcccc---------ccc---C--cccchhHHH----HHHHH--H
Q 027910 123 KQHNLAEELFLGYFT-QGKYIGDKEFLVECARKVGVEGAAE---------FLD---D--PNSGLNEVH----EELKK--Y 181 (217)
Q Consensus 123 ~~~~~~~al~~a~~~-~g~~i~~~~~L~~ia~~~Gld~~~~---------~l~---~--~~~~~~~~~----~~~~a--~ 181 (217)
.-......||+.+-. +..--.+.+.|.+.....|+-..+. .++ . |+..+.+.. -.+.| .
T Consensus 46 ~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGVGrKTAnvV 125 (211)
T COG0177 46 VVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGGEVPDTREELLSLPGVGRKTANVV 125 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCcchHHHHHH
Confidence 356667777776521 1222236788888888999865443 111 1 111222221 01112 2
Q ss_pred hCCCCeecEEEECC-------eeeecCCCCHHHHHHHHHHH
Q 027910 182 SANISGVPHFVLNG-------KHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 182 ~~gv~g~Pt~vv~g-------~~~~~G~~~~~~l~~~i~~~ 215 (217)
-...+|.|+|.|+. +..+....+++..++.+.++
T Consensus 126 L~~a~g~p~i~VDTHV~Rvs~R~gl~~~~~p~~ve~~L~~~ 166 (211)
T COG0177 126 LSFAFGIPAIAVDTHVHRVSNRLGLVPGKTPEEVEEALMKL 166 (211)
T ss_pred HHhhcCCCcccccchHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 23458999999985 22344456777777777653
No 370
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=26.28 E-value=92 Score=23.06 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=20.9
Q ss_pred CcceEEEEEecccCchhhhhHHHHH
Q 027910 11 KKLIRIDVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 11 ~~~v~i~~y~D~~CP~cy~~~~~l~ 35 (217)
-...++++|.||.|.=|-.....|+
T Consensus 23 a~~~~~~vyksPnCGCC~~w~~~mk 47 (149)
T COG3019 23 AQATEMVVYKSPNCGCCDEWAQHMK 47 (149)
T ss_pred cceeeEEEEeCCCCccHHHHHHHHH
Confidence 3578899999999999998776664
No 371
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=26.20 E-value=1.1e+02 Score=25.79 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHhCCCCeecEEEE--CCe-eeecCCCCHHHHHHHHH
Q 027910 178 LKKYSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 178 ~~a~~~gv~g~Pt~vv--~g~-~~~~G~~~~~~l~~~i~ 213 (217)
..|.+.||.|.||+.+ ||. +-..|.+.-+.+..--.
T Consensus 91 aiAnefgiqGYPTIk~~kgd~a~dYRG~R~Kd~iieFAh 129 (468)
T KOG4277|consen 91 AIANEFGIQGYPTIKFFKGDHAIDYRGGREKDAIIEFAH 129 (468)
T ss_pred hhHhhhccCCCceEEEecCCeeeecCCCccHHHHHHHHH
Confidence 3467899999999966 332 33478877777665544
No 372
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=25.98 E-value=78 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCcccc---cccCccc
Q 027910 146 EFLVECARKVGVEGAAE---FLDDPNS 169 (217)
Q Consensus 146 ~~L~~ia~~~Gld~~~~---~l~~~~~ 169 (217)
+.++++.++.|++++.+ .+..++.
T Consensus 80 ~~~k~~L~~~Gi~~eRv~~~~~~~~~~ 106 (124)
T PF02662_consen 80 ERLKKLLEELGIEPERVRLYWISAPEG 106 (124)
T ss_pred HHHHHHHHHcCCChhHeEEEEeCcccH
Confidence 56778999999999998 4555543
No 373
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=25.93 E-value=1.4e+02 Score=22.19 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=21.1
Q ss_pred ceEEEEEecccCchhhhhHHHHHHHHHhc
Q 027910 13 LIRIDVSSDTVCPWCFVGKRNLDKAIASS 41 (217)
Q Consensus 13 ~v~i~~y~D~~CP~cy~~~~~l~~~~~~~ 41 (217)
++-|.+|-.--||.|-...+.+.++.+++
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHc
Confidence 44455554445999999988888887765
No 374
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.83 E-value=23 Score=19.54 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=8.2
Q ss_pred cccCchhhhhH
Q 027910 21 DTVCPWCFVGK 31 (217)
Q Consensus 21 D~~CP~cy~~~ 31 (217)
|+.||+|-...
T Consensus 5 ~v~CP~C~s~~ 15 (36)
T PF03811_consen 5 DVHCPRCQSTE 15 (36)
T ss_pred eeeCCCCCCCC
Confidence 56799998654
No 375
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=25.70 E-value=1.4e+02 Score=22.59 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCe
Q 027910 143 GDKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISG 187 (217)
Q Consensus 143 ~~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g 187 (217)
.+++.+..+++.+|+++++. .++|. ...|.+.|++.|+..
T Consensus 161 P~~~~~~~~~~~~~~~~~~~~~IgD~-----~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 161 PDPKIFQEALERAGISPEEALHIGDS-----LRNDYQGARAAGWRA 201 (203)
T ss_pred CCHHHHHHHHHHcCCChhHEEEECCC-----chHHHHHHHHcCCee
Confidence 35677777778888877766 54442 345566666776653
No 376
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=25.65 E-value=64 Score=20.09 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=14.3
Q ss_pred EEEecccCchhhhhHHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNLD 35 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l~ 35 (217)
..|..+.||+|....-.+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~ 20 (74)
T cd03058 2 KLLGAWASPFVLRVRIALA 20 (74)
T ss_pred EEEECCCCchHHHHHHHHH
Confidence 4678889999998665443
No 377
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=25.53 E-value=26 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=9.8
Q ss_pred ccCchhhhhHHHH
Q 027910 22 TVCPWCFVGKRNL 34 (217)
Q Consensus 22 ~~CP~cy~~~~~l 34 (217)
..||||-..+-.+
T Consensus 58 lsCpwC~gvWvA~ 70 (105)
T PF07098_consen 58 LSCPWCTGVWVAA 70 (105)
T ss_pred hcChhHHHHHHHH
Confidence 5799998876543
No 378
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.44 E-value=63 Score=20.01 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=13.8
Q ss_pred EEEecccCchhhhhHHHH
Q 027910 17 DVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~~l 34 (217)
.+|+...||+|....-.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l 19 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAA 19 (73)
T ss_pred EEecCCCCcHHHHHHHHH
Confidence 578899999999755444
No 379
>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.36 E-value=1.2e+02 Score=19.72 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHcCCCcc
Q 027910 131 LFLGYFTQGKYIGDKEFLVECARKVGVEGA 160 (217)
Q Consensus 131 l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~ 160 (217)
|.+.+|.+.-+++-...|..+|.+.|.+..
T Consensus 12 llqp~w~k~~dlnl~q~lqkla~eagf~~~ 41 (88)
T COG3084 12 LLQPAWQKEPDLNLLQFLQKLAKESGFDGE 41 (88)
T ss_pred HhhHHhccCCCccHHHHHHHHHHHhccccc
Confidence 344568888888889999999999998754
No 380
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=24.93 E-value=77 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=17.2
Q ss_pred cceEEEEEecccCchhhhhHHHH
Q 027910 12 KLIRIDVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 12 ~~v~i~~y~D~~CP~cy~~~~~l 34 (217)
.+.-+.+|+-.-||+|....+.+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHT
T ss_pred CCCEEEEEECCCCHhHHHHHHHH
Confidence 45556666789999999987654
No 381
>PLN00062 TATA-box-binding protein; Provisional
Probab=24.66 E-value=1.1e+02 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.4
Q ss_pred EECCeeeecCCCCHHHHHHHHHHH
Q 027910 192 VLNGKHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 192 vv~g~~~~~G~~~~~~l~~~i~~~ 215 (217)
+.+|+..+.|+.+.+++.++++.+
T Consensus 144 F~sGkvvitGaks~~~~~~ai~~i 167 (179)
T PLN00062 144 FVSGKIVITGAKVREEIYTAFENI 167 (179)
T ss_pred eCCCEEEEEecCCHHHHHHHHHHH
Confidence 337998889999999999998865
No 382
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.48 E-value=84 Score=19.80 Aligned_cols=16 Identities=6% Similarity=-0.442 Sum_probs=12.5
Q ss_pred EEEecccCchhhhhHH
Q 027910 17 DVSSDTVCPWCFVGKR 32 (217)
Q Consensus 17 ~~y~D~~CP~cy~~~~ 32 (217)
.+|+...||+|+...-
T Consensus 2 ~ly~~~~s~~s~rv~~ 17 (73)
T cd03052 2 VLYHWTQSFSSQKVRL 17 (73)
T ss_pred EEecCCCCccHHHHHH
Confidence 5788889999976553
No 383
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=24.37 E-value=3.8e+02 Score=22.25 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHcCCCccccccc----------CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLD----------DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 211 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~----------~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~ 211 (217)
.+|++...++.+++|+|.=...+. .|.++-.+.++...... ++| +|+.|. +|. +.+++.+.
T Consensus 154 ~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iP-LVlHGg---SG~-~~e~~~~a 224 (287)
T PF01116_consen 154 YTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP----DIP-LVLHGG---SGL-PDEQIRKA 224 (287)
T ss_dssp SSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH----TSE-EEESSC---TTS--HHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC----CCC-EEEECC---CCC-CHHHHHHH
Confidence 468999999999999986444221 23333344444444432 677 555543 444 55666666
Q ss_pred HH
Q 027910 212 FQ 213 (217)
Q Consensus 212 i~ 213 (217)
++
T Consensus 225 i~ 226 (287)
T PF01116_consen 225 IK 226 (287)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 384
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=24.35 E-value=29 Score=20.93 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=6.9
Q ss_pred ccCchhhhhH
Q 027910 22 TVCPWCFVGK 31 (217)
Q Consensus 22 ~~CP~cy~~~ 31 (217)
+.||||....
T Consensus 1 i~CPyCge~~ 10 (52)
T PF14255_consen 1 IQCPYCGEPI 10 (52)
T ss_pred CCCCCCCCee
Confidence 4689998633
No 385
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=24.31 E-value=1.1e+02 Score=19.88 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.7
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
.--|.+.|+|. +-+..+++.+.+++++
T Consensus 53 ~~~P~v~V~~~--~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 53 DQGPALLINNR--VFTRLTPGRIDQIAEL 79 (80)
T ss_pred CCCCeEEECCE--EECCCCHHHHHHHHhc
Confidence 44799999875 4566788888888865
No 386
>PRK09726 antitoxin HipB; Provisional
Probab=23.80 E-value=1.6e+02 Score=19.42 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=21.3
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 136 FTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
|..|....+.+.|..++..+|++.+-+
T Consensus 45 ~e~g~~~ps~~~l~~ia~~lgv~~~~~ 71 (88)
T PRK09726 45 FENNPDNTTLTTFFKILQSLELSMTLC 71 (88)
T ss_pred HHCCCCCCCHHHHHHHHHHcCCCcchh
Confidence 455665557899999999999987764
No 387
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=23.73 E-value=1.5e+02 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCcccc
Q 027910 124 QHNLAEELFLGYFTQGK-YIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 124 ~~~~~~al~~a~~~~g~-~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
.+.+++.-..---.+|. +.....+|.+|+..+||++.++
T Consensus 103 Ae~vL~vAv~VA~aDG~~d~~E~avl~eI~~aLGL~p~~~ 142 (144)
T COG3793 103 AEDVLRVAVAVAEADGEFEAEERAVLREIAGALGLSPAEF 142 (144)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCCHHhc
Confidence 34444433322234553 4556899999999999998765
No 388
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=23.69 E-value=1.2e+02 Score=19.43 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=19.4
Q ss_pred CeecEEEECCeeeecCCCCHHHHHHHHHH
Q 027910 186 SGVPHFVLNGKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 186 ~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~ 214 (217)
..-|.++|+|. .+ +..+++.+.+++++
T Consensus 53 ~~gP~v~v~g~-~y-~~vt~~~i~~i~~~ 79 (80)
T cd03064 53 DLAPVMMINDD-VY-GRLTPEKVDAILEA 79 (80)
T ss_pred CCCCEEEECCE-EE-CCCCHHHHHHHHHh
Confidence 45799999876 34 44477888888765
No 389
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.68 E-value=3.9e+02 Score=22.22 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHcCCCccccccc--------CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLD--------DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~--------~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.++++...++.+++|+|.=...+. .+.+.-.+.++.+... ++| +|+.|. +|. +.++|.++++
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~-----~iP-LVlHGg---SG~-~~e~~~~ai~ 221 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV-----DVP-LVLHGA---SDV-PDEDVRRTIE 221 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh-----CCC-eEEecC---CCC-CHHHHHHHHH
Confidence 678899999999999985444221 1333333334443322 578 566554 444 5666766654
No 390
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.63 E-value=4e+02 Score=22.19 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHcCCCccccccc--------CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLD--------DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~--------~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.++++...++.+++|+|.=...+. .+.+.-.+.++...+ .++| +|+.|. +|. +.+++.++++
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~-----~~vP-LVLHGg---SG~-~~e~~~~ai~ 223 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQW-----VNIP-LVLHGA---SGL-PTKDIQQTIK 223 (284)
T ss_pred CCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHH-----hCCC-eEEecC---CCC-CHHHHHHHHH
Confidence 578999999999999985443221 133333333444333 2678 466554 444 4666666654
No 391
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.62 E-value=1e+02 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCcccc---cccCcc---cchhHHHHHHHHHhCCC
Q 027910 145 KEFLVECARKVGVEGAAE---FLDDPN---SGLNEVHEELKKYSANI 185 (217)
Q Consensus 145 ~~~L~~ia~~~Gld~~~~---~l~~~~---~~~~~~~~~~~a~~~gv 185 (217)
.+.|.+++.++||+++.+ .+...| +.+.+.+-.+.-.++|-
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCC
Confidence 367888999999999988 344333 23333333444445553
No 392
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.39 E-value=1.2e+02 Score=28.23 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhCCCCeecEEEE-C------CeeeecCCCCHHHHHHHHHH
Q 027910 171 LNEVHEELKKYSANISGVPHFVL-N------GKHELSGGQPPEVYLRAFQV 214 (217)
Q Consensus 171 ~~~~~~~~~a~~~gv~g~Pt~vv-~------g~~~~~G~~~~~~l~~~i~~ 214 (217)
+.=..-.+.+.+.|+..+.|+|. | |+|-++|..+.+.|.+++++
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~ 99 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHK 99 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHH
Confidence 33444567788999999999988 3 67888999899888888765
No 393
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.26 E-value=4.1e+02 Score=22.18 Aligned_cols=77 Identities=9% Similarity=-0.010 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHH--HhCCCCeecEEEECCeeeecCCCCHHHHHHHHHHH
Q 027910 139 GKYIGDKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKK--YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 215 (217)
Q Consensus 139 g~~i~~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a--~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~~~ 215 (217)
|.|.+..+.|...+++.|+..-.= .+.+ +....+.+....+ ...|..-+=++.|+++-+..|-.+.++|...|...
T Consensus 83 ~sDCn~le~v~pAa~~~g~kv~lGiw~td-d~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~v 161 (305)
T COG5309 83 GSDCNTLENVLPAAEASGFKVFLGIWPTD-DIHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDV 161 (305)
T ss_pred eccchhhhhhHHHHHhcCceEEEEEeecc-chhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHH
Confidence 456677788888888888642211 3333 3444455433333 34566777788889885556777899999988765
Q ss_pred h
Q 027910 216 A 216 (217)
Q Consensus 216 ~ 216 (217)
+
T Consensus 162 r 162 (305)
T COG5309 162 R 162 (305)
T ss_pred H
Confidence 4
No 394
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.09 E-value=1.2e+02 Score=23.23 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHh
Q 027910 194 NGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 194 ~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
+|+..+.|+.+.+++.++++.+.
T Consensus 146 sGkvvitGaks~~~~~~a~~~i~ 168 (174)
T cd04516 146 SGKIVLTGAKSREEIYQAFENIY 168 (174)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH
Confidence 79988899999999999998653
No 395
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=23.04 E-value=1.7e+02 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=23.0
Q ss_pred eEEEEEec-ccCchhhhhHHHHHHHHHhcCCCCceeEE
Q 027910 14 IRIDVSSD-TVCPWCFVGKRNLDKAIASSKDQYDFEIR 50 (217)
Q Consensus 14 v~i~~y~D-~~CP~cy~~~~~l~~~~~~~~~~~~v~v~ 50 (217)
=+|++|+. +-|+-|.. .+.++.++|+. ..+.+.
T Consensus 97 G~i~l~te~~pC~SC~~---vi~qF~~~~pn-i~~~v~ 130 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSN---VIEQFKKDFPN-IKVNVV 130 (133)
T ss_pred ceEEEEecCCcChhHHH---HHHHHHHHCCC-cEEEEe
Confidence 46777775 57888886 77788888873 445554
No 396
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=22.85 E-value=34 Score=22.49 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.0
Q ss_pred EEEecccCchhhhh
Q 027910 17 DVSSDTVCPWCFVG 30 (217)
Q Consensus 17 ~~y~D~~CP~cy~~ 30 (217)
-||.|+.||-|+..
T Consensus 30 syFm~VkC~gc~~i 43 (84)
T KOG1779|consen 30 SYFMDVKCPGCFKI 43 (84)
T ss_pred ceEEEEEcCCceEE
Confidence 48999999999963
No 397
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=22.72 E-value=2.4e+02 Score=18.69 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCcccc--cccCc----ccchhHHHHHHHHHhCCCCeecE
Q 027910 125 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE--FLDDP----NSGLNEVHEELKKYSANISGVPH 190 (217)
Q Consensus 125 ~~~~~al~~a~~~~g~~i~~~~~L~~ia~~~Gld~~~~--~l~~~----~~~~~~~~~~~~a~~~gv~g~Pt 190 (217)
.++...+.+..-..|...+..+.+..+++.++++.++. .+.+. .++.++.=........|+=--|.
T Consensus 3 ~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~ 74 (92)
T PF14338_consen 3 DELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPK 74 (92)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCC
Confidence 34455555555444778888899999999999998876 33332 23333433444445666644443
No 398
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=22.54 E-value=90 Score=18.24 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.3
Q ss_pred CCeecEEEECCeeeec
Q 027910 185 ISGVPHFVLNGKHELS 200 (217)
Q Consensus 185 v~g~Pt~vv~g~~~~~ 200 (217)
-.|++.++|||+..+.
T Consensus 17 ~~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVE 32 (48)
T ss_dssp -BSEEEEEETTEEEEC
T ss_pred CCCEEEEEECCEEEEE
Confidence 4789999999986553
No 399
>PF15616 TerY-C: TerY-C metal binding domain
Probab=22.51 E-value=29 Score=25.34 Aligned_cols=8 Identities=50% Similarity=1.555 Sum_probs=6.4
Q ss_pred ccCchhhh
Q 027910 22 TVCPWCFV 29 (217)
Q Consensus 22 ~~CP~cy~ 29 (217)
..||||-.
T Consensus 106 ~~CPwCg~ 113 (131)
T PF15616_consen 106 VTCPWCGN 113 (131)
T ss_pred EECCCCCC
Confidence 78888865
No 400
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=22.47 E-value=1.1e+02 Score=19.14 Aligned_cols=19 Identities=11% Similarity=-0.150 Sum_probs=14.2
Q ss_pred EEEEecccCchhhhhHHHH
Q 027910 16 IDVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 16 i~~y~D~~CP~cy~~~~~l 34 (217)
+.+|+.+.||.|....-.+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l 19 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFL 19 (76)
T ss_pred CEEeeCCCChhHHHHHHHH
Confidence 3578999999998755434
No 401
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=22.46 E-value=36 Score=22.76 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=11.1
Q ss_pred EEecccCchhhh
Q 027910 18 VSSDTVCPWCFV 29 (217)
Q Consensus 18 ~y~D~~CP~cy~ 29 (217)
+|.|+.||-|+.
T Consensus 32 ~Fm~VkCp~C~n 43 (85)
T PTZ00083 32 YFMDVKCPGCSQ 43 (85)
T ss_pred eEEEEECCCCCC
Confidence 799999999996
No 402
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=22.37 E-value=2.3e+02 Score=20.06 Aligned_cols=42 Identities=7% Similarity=0.000 Sum_probs=17.9
Q ss_pred HHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEEC
Q 027910 150 ECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVLN 194 (217)
Q Consensus 150 ~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~ 194 (217)
+..++.|+++..+ .+.+-+.+..-..-.+.+.++| +|..++.
T Consensus 23 ~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~---~~~~~~~ 65 (121)
T PF01890_consen 23 QALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG---IPLRFFS 65 (121)
T ss_dssp HHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT---SEEEEE-
T ss_pred HHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC---CCeEEEC
Confidence 3444556665555 4444444433333344444544 4555553
No 403
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.36 E-value=3.4e+02 Score=22.66 Aligned_cols=63 Identities=27% Similarity=0.435 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHcCCCcccccc-------c--CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHH
Q 027910 141 YIGDKEFLVECARKVGVEGAAEFL-------D--DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA 211 (217)
Q Consensus 141 ~i~~~~~L~~ia~~~Gld~~~~~l-------~--~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~ 211 (217)
...+++.-.++.+..|+|.=...+ . .+..+=.+.++.++... +| ||+.|. +|. +.+++.++
T Consensus 154 ~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-----~P-lVlHGg---SGi-p~~eI~~a 223 (286)
T COG0191 154 DLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-----LP-LVLHGG---SGI-PDEEIREA 223 (286)
T ss_pred hhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-----CC-EEEeCC---CCC-CHHHHHHH
Confidence 467788888888888888644321 1 23333344445554433 78 777654 454 66777776
Q ss_pred HH
Q 027910 212 FQ 213 (217)
Q Consensus 212 i~ 213 (217)
|+
T Consensus 224 I~ 225 (286)
T COG0191 224 IK 225 (286)
T ss_pred HH
Confidence 64
No 404
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.88 E-value=4.4e+02 Score=21.89 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHcCCCccccccc--------CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLD--------DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~--------~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.++++...++.+++|+|.=...+. .+.+.-.+.++...+. ++| +|+.|. +|. +.+++.++++
T Consensus 154 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~-----~iP-LVlHGg---SG~-~~e~~~kai~ 223 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV-----SIP-LVLHGA---SGV-PDEDVKKAIS 223 (284)
T ss_pred CCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh-----CCC-EEEeCC---CCC-CHHHHHHHHH
Confidence 678999999999999985443221 1333333344443332 578 455543 444 5566666653
No 405
>PLN02309 5'-adenylylsulfate reductase
Probab=21.87 E-value=1.3e+02 Score=26.83 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHH-hCCCCeecEEEE--CCe---eeec-CCCCHHHHHHHHHHH
Q 027910 179 KKY-SANISGVPHFVL--NGK---HELS-GGQPPEVYLRAFQVA 215 (217)
Q Consensus 179 ~a~-~~gv~g~Pt~vv--~g~---~~~~-G~~~~~~l~~~i~~~ 215 (217)
.+. +.+|.++|||++ +|. ..+. |..+.+.|...|+++
T Consensus 413 la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 343 589999999988 332 1334 467889998888765
No 406
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=21.85 E-value=1.3e+02 Score=18.71 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCcccc
Q 027910 147 FLVECARKVGVEGAAE 162 (217)
Q Consensus 147 ~L~~ia~~~Gld~~~~ 162 (217)
.|.+||+++|++...+
T Consensus 24 ~lkdIA~~Lgvs~~tI 39 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTI 39 (60)
T ss_pred cHHHHHHHHCCCHHHH
Confidence 4789999999998776
No 407
>PLN00209 ribosomal protein S27; Provisional
Probab=21.82 E-value=38 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=11.1
Q ss_pred EEecccCchhhh
Q 027910 18 VSSDTVCPWCFV 29 (217)
Q Consensus 18 ~y~D~~CP~cy~ 29 (217)
+|.|+.||-|+.
T Consensus 33 ~Fm~VkCp~C~n 44 (86)
T PLN00209 33 FFMDVKCQGCFN 44 (86)
T ss_pred EEEEEECCCCCC
Confidence 799999999996
No 408
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.63 E-value=4.3e+02 Score=22.04 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHcCCCccccccc--------CcccchhHHHHHHHHHhCCCCeecEEEECCeeeecCCCCHHHHHHHHH
Q 027910 142 IGDKEFLVECARKVGVEGAAEFLD--------DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 213 (217)
Q Consensus 142 i~~~~~L~~ia~~~Gld~~~~~l~--------~~~~~~~~~~~~~~a~~~gv~g~Pt~vv~g~~~~~G~~~~~~l~~~i~ 213 (217)
.++++...++.+++|+|.=...+. .|.+.-.+.+..... .++| +|+.|. +|. +.+++.++++
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~-----~~vP-LVLHGg---SG~-~~e~~~kai~ 223 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREV-----VDVP-LVLHGA---SDV-PDEFVRRTIE 223 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHH-----hCCC-EEEeCC---CCC-CHHHHHHHHH
Confidence 578999999999999985444221 233332333333332 2578 566554 454 4666666653
No 409
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=3.8e+02 Score=26.04 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=23.4
Q ss_pred HHhhcCCCCCCHHHHHHHHHHcCCCcccc
Q 027910 134 GYFTQGKYIGDKEFLVECARKVGVEGAAE 162 (217)
Q Consensus 134 a~~~~g~~i~~~~~L~~ia~~~Gld~~~~ 162 (217)
....+.+||+|++++.++|+.++ |.+.+
T Consensus 539 S~tAQrrDl~Dp~vI~~Fa~~Vq-~~~rL 566 (867)
T COG2844 539 SVTAQRRDLNDPKVIDAFAEAVQ-DEERL 566 (867)
T ss_pred HHHHHhcCCCChHHHHHHHHHhc-CHHHH
Confidence 34568899999999999999998 76655
No 410
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=21.55 E-value=1.4e+02 Score=17.11 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.3
Q ss_pred hhcCCCCCCHHHHHHHHHHcCCC
Q 027910 136 FTQGKYIGDKEFLVECARKVGVE 158 (217)
Q Consensus 136 ~~~g~~i~~~~~L~~ia~~~Gld 158 (217)
|..|...-+.+.+..++..+|++
T Consensus 35 ~e~g~~~~~~~~~~~i~~~lgv~ 57 (58)
T TIGR03070 35 VENGKPTVRLDKVLRVLDALGLE 57 (58)
T ss_pred HHCCCCCCCHHHHHHHHHHcCCC
Confidence 44566445788999999998876
No 411
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=21.45 E-value=46 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=19.1
Q ss_pred CCcceEEEEEecccCchhhhhHHHH
Q 027910 10 GKKLIRIDVSSDTVCPWCFVGKRNL 34 (217)
Q Consensus 10 ~~~~v~i~~y~D~~CP~cy~~~~~l 34 (217)
++.+-+|..|+|+. ||++.+.++.
T Consensus 37 ~~~~ceIELY~DfA-pySFgF~e~y 60 (95)
T PF13496_consen 37 PNHPCEIELYYDFA-PYSFGFAERY 60 (95)
T ss_pred CCCCeEEEEEeccC-ccccceeEEc
Confidence 45688999999986 9999977633
No 412
>PRK00394 transcription factor; Reviewed
Probab=21.43 E-value=1.5e+02 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.8
Q ss_pred EECCeeeecCCCCHHHHHHHHHHHh
Q 027910 192 VLNGKHELSGGQPPEVYLRAFQVAA 216 (217)
Q Consensus 192 vv~g~~~~~G~~~~~~l~~~i~~~~ 216 (217)
+-+|+..+.|+.+.++...+++.+.
T Consensus 145 F~SGKvvitGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 145 FGSGKLVITGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EcCCEEEEEecCCHHHHHHHHHHHH
Confidence 3379988899999999999988763
No 413
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=21.32 E-value=1.5e+02 Score=21.50 Aligned_cols=39 Identities=13% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCe
Q 027910 143 GDKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISG 187 (217)
Q Consensus 143 ~~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g 187 (217)
.+++.+..+++..|+++++. .++|. ..|.+.|++.|+..
T Consensus 102 P~~~~~~~~~~~~~~~~~e~i~IGDs------~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 102 PKPGLILEALKRLGVDASRSLVVGDR------LRDLQAARNAGLAA 141 (147)
T ss_pred CCHHHHHHHHHHcCCChHHEEEEcCC------HHHHHHHHHCCCCE
Confidence 46889999999999998877 66663 34777888888753
No 414
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=21.30 E-value=31 Score=20.16 Aligned_cols=10 Identities=50% Similarity=1.398 Sum_probs=5.4
Q ss_pred ccCchhhhhH
Q 027910 22 TVCPWCFVGK 31 (217)
Q Consensus 22 ~~CP~cy~~~ 31 (217)
-.|+|||...
T Consensus 22 tlC~~C~k~~ 31 (46)
T PF02977_consen 22 TLCQWCWKLK 31 (46)
T ss_dssp SSS-EE-CCC
T ss_pred eehHHHHhcc
Confidence 4799998643
No 415
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=21.29 E-value=38 Score=21.00 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=10.8
Q ss_pred EEecccCchhhh
Q 027910 18 VSSDTVCPWCFV 29 (217)
Q Consensus 18 ~y~D~~CP~cy~ 29 (217)
+|.|..||-|+.
T Consensus 8 ~F~~VkCp~C~n 19 (59)
T PRK00415 8 RFLKVKCPDCGN 19 (59)
T ss_pred eEEEEECCCCCC
Confidence 699999999985
No 416
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=21.16 E-value=1.8e+02 Score=21.74 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHcCCCcccc-cccCcccchhHHHHHHHHHhCCCCe
Q 027910 144 DKEFLVECARKVGVEGAAE-FLDDPNSGLNEVHEELKKYSANISG 187 (217)
Q Consensus 144 ~~~~L~~ia~~~Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g 187 (217)
+++.+..++++.|+++++. .++|. ..+.+.|++.|+.+
T Consensus 143 ~p~~~~~~~~~~~~~~~~~l~vgD~------~~di~aA~~~G~~~ 181 (184)
T TIGR01993 143 SPQAYEKALREAGVDPERAIFFDDS------ARNIAAAKALGMKT 181 (184)
T ss_pred CHHHHHHHHHHhCCCccceEEEeCC------HHHHHHHHHcCCEE
Confidence 6788888889999988876 55553 24677788888754
No 417
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=21.09 E-value=1.6e+02 Score=23.06 Aligned_cols=55 Identities=27% Similarity=0.515 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHhhcCCchHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHcCCCcccc-cccC
Q 027910 105 NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQ--GKYIGDKEFLVECARKVGVEGAAE-FLDD 166 (217)
Q Consensus 105 ~s~~a~~~~~~a~~~g~~~~~~~~~al~~a~~~~--g~~i~~~~~L~~ia~~~Gld~~~~-~l~~ 166 (217)
.|.+|+.+..--...|. +..+|..+|.- |.. ........|+...|+++.++ .+.|
T Consensus 128 GSV~AQkL~Fghs~agd------L~~lfsGyfDttiG~K-rE~~SY~kIa~~iGl~p~eilFLSD 185 (229)
T COG4229 128 GSVKAQKLFFGHSDAGD------LNSLFSGYFDTTIGKK-RESQSYAKIAGDIGLPPAEILFLSD 185 (229)
T ss_pred CCchhHHHhhccccccc------HHhhhcceeecccccc-ccchhHHHHHHhcCCCchheEEecC
Confidence 45556555543222333 46778887753 222 24567889999999999988 5444
No 418
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=21.09 E-value=44 Score=24.80 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.1
Q ss_pred eEEEEEe---cccCchhhh
Q 027910 14 IRIDVSS---DTVCPWCFV 29 (217)
Q Consensus 14 v~i~~y~---D~~CP~cy~ 29 (217)
+.+.+|+ +..||||+.
T Consensus 16 ~r~~if~~gCnl~C~~C~n 34 (154)
T TIGR02491 16 IRVSLFVAGCKHHCEGCFN 34 (154)
T ss_pred cEEEEEECCCCCCCcCCCc
Confidence 3445553 689999995
No 419
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=20.87 E-value=2.2e+02 Score=17.66 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=19.5
Q ss_pred cceEEEEEec-ccCchhhhhHHHHHHHHHhcCC
Q 027910 12 KLIRIDVSSD-TVCPWCFVGKRNLDKAIASSKD 43 (217)
Q Consensus 12 ~~v~i~~y~D-~~CP~cy~~~~~l~~~~~~~~~ 43 (217)
..+++.+... +.||..-.....+++.+..+++
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~g 66 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPG 66 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCC
Confidence 5666776666 6677666666667777766654
No 420
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=20.60 E-value=1.4e+02 Score=22.67 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHc-------CCCcccc-cccCcccchhHHHHHHHHHhCCCCeecEEEE
Q 027910 140 KYIGDKEFLVECARKV-------GVEGAAE-FLDDPNSGLNEVHEELKKYSANISGVPHFVL 193 (217)
Q Consensus 140 ~~i~~~~~L~~ia~~~-------Gld~~~~-~l~~~~~~~~~~~~~~~a~~~gv~g~Pt~vv 193 (217)
..| +.+.|.++.+.. ++.+-.| .+.+++.++++.+.........+...|.+++
T Consensus 18 ~~I-~~e~l~~ileaa~~APS~~N~Qpw~fvvV~~~e~~~~l~~~~~~~~~~~~~~ap~~iv 78 (185)
T cd02148 18 EPV-SDEQLRAIYDLVKWGPTAANSQPARFVFVRSAEAKERLVPALSEGNRAKTLAAPVTAI 78 (185)
T ss_pred CCC-CHHHHHHHHHHHHhCCCCCCCCCeEEEEEECHHHHHHHHHHHHHhhHHHHhcCCEEEE
Confidence 356 467788777654 3445556 6778787877766543233344667888875
Done!