BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027911
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 230 bits (586), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 106/184 (57%), Positives = 144/184 (78%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 16 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG ++
Sbjct: 76 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ AN +L + LN LS TGQ++EKI +DTDRD F++AEEAK+YGLID V++ K
Sbjct: 136 IEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 195
Query: 207 ILQP 210
P
Sbjct: 196 WSHP 199
>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 105/184 (57%), Positives = 144/184 (78%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 16 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DTI+HI+PDV T+C+G+AA+MG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG ++
Sbjct: 76 AIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 135
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ AN +L + LN LS TGQ++EKI +DTDRD F++AEEAK+YGLID V++ K
Sbjct: 136 IEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 195
Query: 207 ILQP 210
P
Sbjct: 196 WSHP 199
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 143/180 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A D KDI +Y+NSPGGSVTAG
Sbjct: 18 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 77
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG ++
Sbjct: 78 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATE 137
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ AN +L + LN LS TGQ++EKI +DTDRD F++AEEAK+YGLID V++ K
Sbjct: 138 IEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 197
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 143/180 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RI+ G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17 RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT+ IRPDVST+C+G AASMGAFLLS G KGKR+SLP+SRIMIHQPLGGAQG SD
Sbjct: 77 SIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASD 136
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ +NE+L K +N L+ ++GQ+LE+I +DTDRDF+MSA+EAK+YGLID V+ K
Sbjct: 137 IEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNVK 196
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 143/180 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RI+ G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17 RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT+ IRPDVST+C+G AA+MGAFLLS G KGKR+SLP+SRIMIHQPLGGAQG SD
Sbjct: 77 SIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASD 136
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ +NE+L K +N L+ ++GQ+LE+I +DTDRDF+MSA+EAK+YGLID V+ K
Sbjct: 137 IEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQKNVK 196
>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
Length = 193
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 139/175 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + R+I G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 15 RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG +D
Sbjct: 75 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATD 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A E+L K +N ++ HTGQ+LE+I DT+RD F+SA EA +YGL+D ++
Sbjct: 135 IEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1YG6|A Chain A, Clpp
pdb|1YG6|B Chain B, Clpp
pdb|1YG6|C Chain C, Clpp
pdb|1YG6|D Chain D, Clpp
pdb|1YG6|E Chain E, Clpp
pdb|1YG6|F Chain F, Clpp
pdb|1YG6|G Chain G, Clpp
pdb|1YG6|H Chain H, Clpp
pdb|1YG6|I Chain I, Clpp
pdb|1YG6|J Chain J, Clpp
pdb|1YG6|K Chain K, Clpp
pdb|1YG6|L Chain L, Clpp
pdb|1YG6|M Chain M, Clpp
pdb|1YG6|N Chain N, Clpp
pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
Length = 193
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 139/175 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + R+I G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 15 RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG +D
Sbjct: 75 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATD 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A E+L K +N ++ HTGQ+LE+I DT+RD F+SA EA +YGL+D ++
Sbjct: 135 IEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
Length = 207
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/175 (57%), Positives = 139/175 (79%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + R+I G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 29 RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 88
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG +D
Sbjct: 89 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATD 148
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A E+L K +N ++ HTGQ+LE+I DT+RD F+SA EA +YGL+D ++
Sbjct: 149 IEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/175 (57%), Positives = 138/175 (78%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + R+I G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 15 RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
+I+DT++ I+PDVST+C+G AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG +D
Sbjct: 75 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATD 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ E+L K +N ++ HTGQ+LE+I DT+RD F+SA EA +YGL+D ++
Sbjct: 135 IEIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 218 bits (554), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 16 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 75
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG ++
Sbjct: 76 AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 135
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A +L + LN L+ TGQ LE I DTDRD F SAEEA +YGLID ++
Sbjct: 136 IEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG ++
Sbjct: 75 AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A +L + LN L+ TGQ LE I DTDRD F SAEEA +YGLID ++
Sbjct: 135 IEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG ++
Sbjct: 75 AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A +L + LN L+ TGQ LE I DTDRD F SAEEA +YGLID ++
Sbjct: 135 IEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 216 bits (550), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII G ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGKRY+LPNS +MIHQPLGGAQG ++
Sbjct: 75 AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATE 134
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
I++ A +L + LN L+ TGQ LE I DTDRD F SAEEA +YGLID ++
Sbjct: 135 IEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 134/183 (73%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RI+ G V D AN+++AQLL+L++ DP+KDI Y+NSPGG VTAG
Sbjct: 19 RAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGXVTAGX 78
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
++DT + I+PDVST+C+GLAAS G+ LL+ G KGKRYSLP+S+I IHQPLGG +G SD
Sbjct: 79 GVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXIHQPLGGFRGQASD 138
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHK 206
I++ A +L K LN L++HTGQ LE I +DTDRD F A+EAK YGLID V+ +
Sbjct: 139 IEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKAYGLIDHVIESREA 198
Query: 207 ILQ 209
I++
Sbjct: 199 IIK 201
>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
Length = 277
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 128/178 (71%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RI+ GP++D +A++++AQLL+L + K I MY+NSPGG VTAG+
Sbjct: 71 RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL 130
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT+++I + T CVG AASMG+ LL+AGT G R+SLPNSRIMIHQP GGA+G +D
Sbjct: 131 AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATD 190
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 204
I +QA E++ K L + HT Q+L+ I +RD +MS EA+++G++D V+++P
Sbjct: 191 IAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHP 248
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%)
Query: 30 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 89
+V +L RII G V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 90 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 149
DT+ D++T +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG G +DI +
Sbjct: 79 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 138
Query: 150 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 205
QA + K + + TGQ +E+I D+DRD + +A EA +YG +D ++ H
Sbjct: 139 QAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%)
Query: 30 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 89
+V +L RII G V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 90 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 149
DT+ D++T +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG G +DI +
Sbjct: 79 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 138
Query: 150 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 205
QA + K + + TGQ +E+I D+DRD + +A EA +YG +D ++ H
Sbjct: 139 QAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 121/176 (68%)
Query: 30 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 89
+V +L RII G V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 20 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 79
Query: 90 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 149
DT+ D++T +G+AASMG FLL+AGTKGKRY+LP++RI++HQPLGG G +DI +
Sbjct: 80 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAI 139
Query: 150 QANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 205
QA + K + + TGQ +E+I D+DRD + +A EA +YG +D ++ H
Sbjct: 140 QAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 195
>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
Length = 215
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 118/179 (65%), Gaps = 3/179 (1%)
Query: 35 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH 94
F+ RII + A+ +++QLLYLD ++ N DI +Y+NSPGGS+ G+AI D +
Sbjct: 36 FFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 94
Query: 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEM 154
I+ D+ T+ GL ASM + +L++G KGKR SLPN RIMIHQPLG A G DI++Q E+
Sbjct: 95 IKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEI 154
Query: 155 LHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN--PHKILQPV 211
L+ K L YLS T QT+E I +D+DRD++M+A EAK YG+ID V+ PH V
Sbjct: 155 LYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKLPHPYFNKV 213
>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
Length = 195
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + R+I G VED AN+ +AQ L+L++ +PNKDI +Y+NSPGG+VT+
Sbjct: 17 RAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPGGAVTSAX 76
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 146
AI+DT + ++PDV T+C+G AAS GA LL+ G KGKR+ LP+S + IHQ LGG QG +D
Sbjct: 77 AIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQGQGTD 136
Query: 147 IDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGV 200
I + A + LN L+ HTG+ +E++ +DT+RD+F++ EEA +YGLID +
Sbjct: 137 IQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 115/179 (64%), Gaps = 2/179 (1%)
Query: 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 86
R ++ S+L + RII GPVED+ AN ++AQLL+LDA D KDI +Y+N+PGGSV+AG+
Sbjct: 34 RSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL 93
Query: 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP--LGGAQGGQ 144
AI DT I+ DV T+ G AAS G + S+G KGKR+ LPN+ IHQP G Q
Sbjct: 94 AIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQ 153
Query: 145 SDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203
+D+ + +L + L L+ ++GQ+ EK++ D +RD + SA+E +YG ID + N
Sbjct: 154 TDMAIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDEIXAN 212
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 11/183 (6%)
Query: 30 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---------- 79
N+ S L RII P+ ++ I++QLLYL+ K I +Y+NS G
Sbjct: 34 NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93
Query: 80 GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 139
+T ++I D I +I DV T C+G A + L S+G KG R+SL NS ++Q
Sbjct: 94 NGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSI 153
Query: 140 AQGGQ-SDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLID 198
Q ++I++Q E+++ K + +S +T + I+ +RD + +A+EA D+ LID
Sbjct: 154 IPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLID 213
Query: 199 GVV 201
++
Sbjct: 214 HIL 216
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 33 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSV 82
S L RII P+ ++ I++QLLYL+ K I +Y+NS G +
Sbjct: 23 SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 83 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 142
T ++I D I +I DV T C+G A + L S+G KG R+SL NS ++Q
Sbjct: 83 TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPF 142
Query: 143 GQ-SDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVV 201
Q ++I++Q E+++ K + +S +T + I+ +RD + +A+EA D+ LID ++
Sbjct: 143 NQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHIL 202
>pdb|3BPP|A Chain A, 1510-N Membrane Protease K138a Mutant Specific For A
Stomatin Homolog From Pyrococcus Horikoshii
pdb|3VIV|A Chain A, 1510-N Membrane-Bound Stomatin-Specific Protease K138a
Mutant In Complex With A Substrate Peptide
pdb|3VIV|B Chain B, 1510-N Membrane-Bound Stomatin-Specific Protease K138a
Mutant In Complex With A Substrate Peptide
Length = 230
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 66 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---------PDVSTVCVGLAASMGAFLLS 116
D + II+ L++PGG A M I I+ + P S G ++G+ L++
Sbjct: 37 DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIA 96
Query: 117 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176
P + I +P+ G S I+ + A + L+ +G+
Sbjct: 97 MA--------PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKS-LAQESGRNATIA 147
Query: 177 NEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209
E +D ++ EEA YG+I+ V + +++L+
Sbjct: 148 EEFITKDLSLTPEEALKYGVIEVVARDINELLK 180
>pdb|2DEO|A Chain A, 1510-N Membrane Protease Specific For A Stomatin Homolog
From Pyrococcus Horikoshii
pdb|2DEO|B Chain B, 1510-N Membrane Protease Specific For A Stomatin Homolog
From Pyrococcus Horikoshii
Length = 230
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 66 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---------PDVSTVCVGLAASMGAFLLS 116
D + II+ L++PGG A I I+ + P S G ++G+ L++
Sbjct: 37 DNAEAIIIELDTPGGRADAXXNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIA 96
Query: 117 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176
P + I +P+ G S I+ + A + L+ +G+
Sbjct: 97 XA--------PGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKS-LAQESGRNATIA 147
Query: 177 NEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209
E +D ++ EEA YG+I+ V + +++L+
Sbjct: 148 EEFITKDLSLTPEEALKYGVIEVVARDINELLK 180
>pdb|4F79|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase Mutant
(E375q) In Complex With Salicin 6-Phosphate
pdb|4GPN|A Chain A, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
Mutant) From Streptococcus Mutans Ua150 In Complex With
Gentiobiose 6-Phosphate.
pdb|4GPN|B Chain B, The Crystal Structure Of 6-P-Beta-D-Glucosidase (E375q
Mutant) From Streptococcus Mutans Ua150 In Complex With
Gentiobiose 6-Phosphate
Length = 480
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 120 KGKRYSLPNSRIMIHQPLGGAQGGQSDID-LQANEMLHHKANLNGYLSYHTGQTLEKINE 178
+G RY+L M H PL Q G ID ++A+ M+H ++ YL H + ++ ++E
Sbjct: 357 QGLRYALNWFTDMYHLPLFIVQNGFGAIDQVEADGMVHDDYRID-YLGAHIKEMIKAVDE 415
Query: 179 D 179
D
Sbjct: 416 D 416
>pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|4 Chain 4, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|4 Chain 4, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|E Chain E, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 409
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 24 LLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNK 69
+L F+ V Q F H IR GG V++D+ V +L L V P++
Sbjct: 156 ILDLFEWVTGQRFHHNYIRIGG-VKEDLPEEFVPELKKLLEVLPHR 200
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD--IDLQ 150
R +R D T+ +G A +FL A +Y+L I++ GGQ D +D+
Sbjct: 274 RPVRVDRETLGLGYAGVYSSFLRHAEIAAAKYNLKTLDILVELGHRRMVGGQEDMIVDVA 333
Query: 151 ANEMLHHKAN 160
+ + HK N
Sbjct: 334 LDLLAAHKEN 343
>pdb|4F66|A Chain A, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
Streptococcus Mutans Ua159 In Complex With
Beta-D-Glucose-6-Phosphate.
pdb|4F66|B Chain B, The Crystal Structure Of 6-Phospho-Beta-Glucosidase From
Streptococcus Mutans Ua159 In Complex With
Beta-D-Glucose-6-Phosphate
Length = 480
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 120 KGKRYSLPNSRIMIHQPLGGAQGGQSDID-LQANEMLHHKANLNGYLSYHTGQTLEKINE 178
+G RY+L M H PL + G ID ++A+ M+H ++ YL H + ++ ++E
Sbjct: 357 QGLRYALNWFTDMYHLPLFIVENGFGAIDQVEADGMVHDDYRID-YLGAHIKEMIKAVDE 415
Query: 179 D 179
D
Sbjct: 416 D 416
>pdb|3RST|A Chain A, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|B Chain B, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|C Chain C, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|D Chain D, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|E Chain E, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|F Chain F, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|G Chain G, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
pdb|3RST|H Chain H, Crystal Structure Of Bacillus Subtilis Signal Peptide
Peptidase A
Length = 240
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 69 KDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST---VCVG-LAASMGAFLLSAGTK 120
K I++ +NSPGG V I + I+ + V +G +AAS G ++ +A K
Sbjct: 48 KGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADK 103
>pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
pdb|3BF0|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Native Crystals
Length = 593
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 65 VDPN-KDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFL 114
+DP K I++ +NSPGGSVTA I + R V V G+AAS G ++
Sbjct: 336 LDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWI 389
>pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|B Chain B, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|C Chain C, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
pdb|3BEZ|D Chain D, Crystal Structure Of Escherichia Coli Signal Peptide
Peptidase (Sppa), Semet Crystals
Length = 593
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 65 VDPN-KDIIMYLNSPGGSVTAGMAI 88
+DP K I++ +NSPGGSVTA I
Sbjct: 336 LDPKVKAIVLRVNSPGGSVTASEVI 360
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 28 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMY 74
FQN SQ+ ++++ + G ++ N +++ ++ ++PN D+ Y
Sbjct: 444 FQNSSSQVSKNKLDKFGALTISELKNAVLSSIVSTIQIEPNSDLTGY 490
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 28 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMY 74
FQN SQ+ ++++ + G ++ N +++ ++ ++PN D+ Y
Sbjct: 446 FQNSSSQVSKNKLDKFGALTISELKNAVLSSIVSTIQIEPNSDLTGY 492
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.1 bits (61), Expect = 3.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 28 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMY 74
FQN SQ+ ++++ + G ++ N +++ ++ ++PN D+ Y
Sbjct: 446 FQNSSSQVSKNKLDKFGALTISELKNAVLSSIVSTIQIEPNSDLTGY 492
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 158 KANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLI--DGVVMNPH 205
KA + LS+ G L+ +NE+ D++++ + KD G I + + M PH
Sbjct: 10 KATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYIEMKPH 58
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 59 LLYLDAVDPNKDIIMYLNSPGGSVTAG 85
L Y V PNK+I ++L PG + AG
Sbjct: 209 LTYAQTVSPNKNIKLFLGLPGSASAAG 235
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 149 LQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLI--DGVVMNPH 205
++A KA + LS+ G L+ +NE+ D++++ + KD G I + + M PH
Sbjct: 10 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKD-GFIPKNYIEMKPH 67
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 245 MTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 149 LQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 193
++A + KA + LS+ G L+ +NE++D++++ + KD
Sbjct: 1 MEAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKD 45
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 245 MTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 262 MTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 245 MTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 245 MTTRTGDSVYGFNSNTDRDFYTATDSSK 272
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 262 MTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 262 MTTRTGDSVYGFNSNTDRDFYTATDSSK 289
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 165 LSYHTGQTLEKINEDTDRDFFMSAEEAK 192
++ TG ++ N +TDRDF+ + + +K
Sbjct: 245 MTTRTGDSVYGFNSNTDRDFYTATDSSK 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,200,807
Number of Sequences: 62578
Number of extensions: 246123
Number of successful extensions: 563
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 50
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)