Query 027911
Match_columns 217
No_of_seqs 154 out of 1368
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 5.1E-49 1.1E-53 320.8 19.1 181 25-205 14-194 (200)
2 PRK14514 ATP-dependent Clp pro 100.0 9.2E-48 2E-52 320.3 20.6 186 19-204 29-220 (221)
3 PRK14513 ATP-dependent Clp pro 100.0 1.9E-47 4.1E-52 314.7 20.0 178 27-204 16-193 (201)
4 CHL00028 clpP ATP-dependent Cl 100.0 2.8E-47 6.1E-52 314.1 20.3 183 23-205 15-198 (200)
5 KOG0840 ATP-dependent Clp prot 100.0 1.1E-47 2.4E-52 318.9 16.3 186 25-210 79-264 (275)
6 PRK12551 ATP-dependent Clp pro 100.0 1.7E-46 3.8E-51 308.4 19.8 178 27-204 14-191 (196)
7 PRK12552 ATP-dependent Clp pro 100.0 2.3E-46 4.9E-51 311.4 20.1 179 27-205 19-216 (222)
8 TIGR00493 clpP ATP-dependent C 100.0 1.6E-44 3.4E-49 296.4 20.0 177 26-202 14-190 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 1.9E-44 4E-49 297.1 20.2 180 31-210 16-195 (197)
10 PF00574 CLP_protease: Clp pro 100.0 1.8E-44 4E-49 293.6 14.6 178 26-203 4-181 (182)
11 PRK00277 clpP ATP-dependent Cl 100.0 1.5E-43 3.3E-48 292.5 20.3 182 26-207 19-200 (200)
12 PRK12553 ATP-dependent Clp pro 100.0 1.4E-42 3.1E-47 288.1 18.9 180 27-206 24-205 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.3E-42 2.8E-47 280.6 17.7 171 30-200 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 3E-41 6.5E-46 270.4 18.6 162 39-200 1-162 (162)
15 cd07015 Clp_protease_NfeD Nodu 100.0 8.1E-34 1.7E-38 228.8 16.4 162 40-210 3-172 (172)
16 cd07016 S14_ClpP_1 Caseinolyti 100.0 1.4E-33 3E-38 225.2 17.3 156 40-200 2-160 (160)
17 cd00394 Clp_protease_like Case 100.0 1E-31 2.2E-36 214.1 17.2 159 40-200 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 8.1E-30 1.8E-34 208.6 17.3 168 39-210 2-172 (187)
19 cd07021 Clp_protease_NfeD_like 100.0 1.6E-29 3.5E-34 205.3 15.7 163 40-210 3-178 (178)
20 COG0616 SppA Periplasmic serin 99.9 7.7E-26 1.7E-30 198.9 15.2 172 39-214 62-272 (317)
21 TIGR00706 SppA_dom signal pept 99.9 1.9E-24 4.1E-29 179.5 16.8 173 39-216 3-207 (207)
22 PRK10949 protease 4; Provision 99.9 2.3E-23 4.9E-28 196.7 17.2 174 39-216 329-541 (618)
23 TIGR00705 SppA_67K signal pept 99.9 3.2E-23 6.9E-28 195.3 17.5 172 40-215 312-522 (584)
24 cd07023 S49_Sppa_N_C Signal pe 99.9 4.5E-23 9.8E-28 171.2 16.0 168 39-210 3-206 (208)
25 cd07014 S49_SppA Signal peptid 99.9 8.9E-23 1.9E-27 165.4 15.2 151 51-211 23-176 (177)
26 cd07022 S49_Sppa_36K_type Sign 99.9 2.2E-22 4.8E-27 167.9 16.0 166 40-210 4-212 (214)
27 cd07019 S49_SppA_1 Signal pept 99.9 2.5E-21 5.4E-26 161.3 16.3 169 39-211 3-210 (211)
28 PRK11778 putative inner membra 99.9 1.1E-21 2.3E-26 172.3 14.5 170 39-214 93-296 (330)
29 COG1030 NfeD Membrane-bound se 99.9 2.2E-21 4.8E-26 173.7 13.7 165 39-211 29-196 (436)
30 cd07018 S49_SppA_67K_type Sign 99.9 5.2E-21 1.1E-25 160.5 14.6 162 45-211 24-220 (222)
31 PF01972 SDH_sah: Serine dehyd 99.7 7.8E-17 1.7E-21 136.9 16.0 147 44-197 69-242 (285)
32 TIGR00705 SppA_67K signal pept 99.6 6E-15 1.3E-19 139.3 14.5 160 51-214 77-279 (584)
33 PF01343 Peptidase_S49: Peptid 99.6 4.7E-15 1E-19 117.8 9.5 121 92-216 2-152 (154)
34 PRK10949 protease 4; Provision 99.6 5.8E-14 1.3E-18 133.1 14.0 160 53-216 98-300 (618)
35 cd06558 crotonase-like Crotona 99.2 3.8E-10 8.2E-15 91.9 12.9 145 40-203 11-181 (195)
36 COG3904 Predicted periplasmic 99.1 2.8E-09 6E-14 87.3 12.4 151 41-199 79-236 (245)
37 PRK05869 enoyl-CoA hydratase; 99.0 6.9E-09 1.5E-13 87.1 13.8 151 40-210 20-193 (222)
38 PRK06495 enoyl-CoA hydratase; 99.0 6.4E-09 1.4E-13 89.0 12.8 147 40-209 16-187 (257)
39 PRK08258 enoyl-CoA hydratase; 99.0 1.5E-08 3.3E-13 87.7 14.4 145 41-203 30-202 (277)
40 PRK06688 enoyl-CoA hydratase; 99.0 1.1E-08 2.4E-13 87.4 13.5 144 41-203 18-184 (259)
41 PRK07110 polyketide biosynthes 99.0 2.2E-08 4.8E-13 85.3 14.3 153 40-212 17-190 (249)
42 PRK03580 carnitinyl-CoA dehydr 99.0 1.7E-08 3.7E-13 86.5 13.7 150 40-209 15-187 (261)
43 PRK06143 enoyl-CoA hydratase; 98.9 1.8E-08 3.8E-13 86.3 13.0 144 40-203 19-187 (256)
44 PRK11423 methylmalonyl-CoA dec 98.9 2.2E-08 4.8E-13 85.9 13.3 147 40-207 16-187 (261)
45 PRK06190 enoyl-CoA hydratase; 98.9 3.9E-08 8.4E-13 84.4 14.8 145 40-203 16-182 (258)
46 PRK09674 enoyl-CoA hydratase-i 98.9 2.3E-08 5E-13 85.5 13.3 145 40-203 14-180 (255)
47 PRK06142 enoyl-CoA hydratase; 98.9 2.2E-08 4.7E-13 86.4 13.3 149 41-208 19-202 (272)
48 PRK07509 enoyl-CoA hydratase; 98.9 2E-08 4.2E-13 86.1 12.8 149 40-207 15-194 (262)
49 PLN02664 enoyl-CoA hydratase/d 98.9 2.4E-08 5.3E-13 86.3 13.4 145 40-203 20-199 (275)
50 PRK07658 enoyl-CoA hydratase; 98.9 3.6E-08 7.8E-13 84.2 14.1 152 40-211 14-189 (257)
51 PRK07511 enoyl-CoA hydratase; 98.9 4.2E-08 9.1E-13 84.0 14.1 151 40-210 15-192 (260)
52 TIGR03210 badI 2-ketocyclohexa 98.9 2.5E-08 5.5E-13 85.3 12.6 151 40-210 14-188 (256)
53 PLN02600 enoyl-CoA hydratase 98.9 4.8E-08 1E-12 83.4 14.1 151 40-210 7-182 (251)
54 TIGR03189 dienoyl_CoA_hyt cycl 98.9 4.7E-08 1E-12 83.5 14.0 146 40-205 13-178 (251)
55 PRK08138 enoyl-CoA hydratase; 98.9 5.4E-08 1.2E-12 83.5 14.4 145 40-203 20-186 (261)
56 PRK09076 enoyl-CoA hydratase; 98.9 4.2E-08 9.2E-13 84.0 13.7 145 40-203 15-183 (258)
57 PRK05809 3-hydroxybutyryl-CoA 98.9 3.6E-08 7.7E-13 84.5 13.1 150 40-209 16-190 (260)
58 PF00378 ECH: Enoyl-CoA hydrat 98.9 2E-08 4.4E-13 85.0 11.2 144 40-205 10-180 (245)
59 PRK06210 enoyl-CoA hydratase; 98.9 2.4E-08 5.1E-13 86.1 11.7 145 40-203 18-196 (272)
60 PRK05980 enoyl-CoA hydratase; 98.9 3.8E-08 8.2E-13 84.3 12.8 150 40-209 15-193 (260)
61 PRK07938 enoyl-CoA hydratase; 98.9 3E-08 6.4E-13 84.6 11.7 146 40-208 14-183 (249)
62 PRK05981 enoyl-CoA hydratase; 98.9 5.8E-08 1.3E-12 83.4 13.5 151 40-210 16-197 (266)
63 TIGR01929 menB naphthoate synt 98.9 3.1E-08 6.7E-13 84.9 11.6 150 40-209 15-190 (259)
64 PRK08139 enoyl-CoA hydratase; 98.9 6.4E-08 1.4E-12 83.3 13.4 144 40-203 23-191 (266)
65 PLN02921 naphthoate synthase 98.9 5.8E-08 1.3E-12 86.0 13.5 145 40-203 79-249 (327)
66 PRK07396 dihydroxynaphthoic ac 98.9 4.3E-08 9.3E-13 84.7 12.4 151 40-210 25-201 (273)
67 PLN02888 enoyl-CoA hydratase 98.8 9.2E-08 2E-12 82.3 14.2 145 40-203 22-187 (265)
68 PRK06023 enoyl-CoA hydratase; 98.8 5.7E-08 1.2E-12 82.8 12.8 145 40-203 18-185 (251)
69 PRK08260 enoyl-CoA hydratase; 98.8 6.3E-08 1.4E-12 84.6 13.3 145 40-203 16-201 (296)
70 PRK07327 enoyl-CoA hydratase; 98.8 8.2E-08 1.8E-12 82.7 13.7 145 40-203 24-194 (268)
71 PLN03214 probable enoyl-CoA hy 98.8 6.7E-08 1.4E-12 83.8 13.1 151 40-209 24-201 (278)
72 PRK05864 enoyl-CoA hydratase; 98.8 4.6E-08 9.9E-13 84.6 12.0 150 40-209 22-203 (276)
73 PRK08150 enoyl-CoA hydratase; 98.8 1.2E-07 2.6E-12 81.1 14.5 147 41-209 15-185 (255)
74 TIGR02280 PaaB1 phenylacetate 98.8 9.8E-08 2.1E-12 81.6 13.9 149 40-209 11-186 (256)
75 PRK09245 enoyl-CoA hydratase; 98.8 9.8E-08 2.1E-12 82.0 13.6 145 40-203 15-191 (266)
76 PRK06494 enoyl-CoA hydratase; 98.8 1E-07 2.2E-12 81.6 13.6 145 40-203 16-182 (259)
77 PRK06127 enoyl-CoA hydratase; 98.8 1.1E-07 2.3E-12 82.1 13.7 149 40-208 23-198 (269)
78 PRK06144 enoyl-CoA hydratase; 98.8 1.1E-07 2.4E-12 81.6 13.7 139 47-203 32-191 (262)
79 PLN02267 enoyl-CoA hydratase/i 98.8 1.5E-07 3.3E-12 79.8 14.2 154 40-211 12-192 (239)
80 PRK07468 enoyl-CoA hydratase; 98.8 1.1E-07 2.5E-12 81.5 13.2 144 40-203 17-187 (262)
81 PRK06563 enoyl-CoA hydratase; 98.8 1.6E-07 3.4E-12 80.3 13.6 145 40-203 11-180 (255)
82 PRK07657 enoyl-CoA hydratase; 98.8 1.4E-07 3.1E-12 80.8 13.3 145 40-203 16-185 (260)
83 PRK05995 enoyl-CoA hydratase; 98.8 1.4E-07 3E-12 80.9 13.1 143 40-202 16-185 (262)
84 PRK07854 enoyl-CoA hydratase; 98.8 1.4E-07 3.1E-12 80.1 13.0 143 40-202 12-173 (243)
85 PRK08252 enoyl-CoA hydratase; 98.8 1.7E-07 3.7E-12 80.1 13.4 151 40-210 15-185 (254)
86 PRK05862 enoyl-CoA hydratase; 98.8 1.5E-07 3.2E-12 80.5 13.0 145 40-203 16-182 (257)
87 PRK08321 naphthoate synthase; 98.8 1.5E-07 3.4E-12 82.4 13.4 149 40-208 37-228 (302)
88 PRK08290 enoyl-CoA hydratase; 98.8 9E-08 2E-12 83.4 11.7 142 41-203 17-204 (288)
89 PRK07260 enoyl-CoA hydratase; 98.8 1.1E-07 2.5E-12 81.1 12.1 144 41-203 15-186 (255)
90 PRK08140 enoyl-CoA hydratase; 98.8 2.3E-07 5.1E-12 79.5 14.0 144 40-203 16-187 (262)
91 PRK05870 enoyl-CoA hydratase; 98.8 7.6E-08 1.7E-12 82.0 10.5 140 40-201 15-181 (249)
92 PRK09120 p-hydroxycinnamoyl Co 98.7 2.1E-07 4.6E-12 80.5 13.4 144 41-203 21-192 (275)
93 PRK07799 enoyl-CoA hydratase; 98.7 3.3E-07 7.1E-12 78.7 14.4 151 40-210 17-194 (263)
94 PRK08259 enoyl-CoA hydratase; 98.7 2.1E-07 4.6E-12 79.6 13.2 151 40-210 15-187 (254)
95 PRK08788 enoyl-CoA hydratase; 98.7 1.9E-07 4.1E-12 81.4 13.0 143 47-209 40-214 (287)
96 PRK07112 polyketide biosynthes 98.7 1.7E-07 3.6E-12 80.2 12.3 151 40-212 16-192 (255)
97 PRK08272 enoyl-CoA hydratase; 98.7 2E-07 4.3E-12 81.6 12.9 141 40-202 22-211 (302)
98 PRK05674 gamma-carboxygeranoyl 98.7 1.5E-07 3.2E-12 81.0 11.8 148 41-209 19-193 (265)
99 PRK06072 enoyl-CoA hydratase; 98.7 2.6E-07 5.7E-12 78.7 13.0 141 40-200 12-173 (248)
100 PRK07827 enoyl-CoA hydratase; 98.7 2E-07 4.4E-12 79.8 12.0 150 40-212 18-197 (260)
101 TIGR03200 dearomat_oah 6-oxocy 98.7 3.7E-07 7.9E-12 81.5 13.7 144 40-203 40-212 (360)
102 PRK07659 enoyl-CoA hydratase; 98.7 1.9E-07 4.1E-12 80.0 11.6 141 41-201 19-184 (260)
103 KOG1680 Enoyl-CoA hydratase [L 98.7 1.5E-07 3.2E-12 80.4 10.7 149 40-211 49-222 (290)
104 PRK06213 enoyl-CoA hydratase; 98.7 5E-07 1.1E-11 76.0 13.2 142 40-202 15-179 (229)
105 PRK12478 enoyl-CoA hydratase; 98.7 1.7E-07 3.7E-12 82.1 10.4 142 40-203 17-197 (298)
106 COG1024 CaiD Enoyl-CoA hydrata 98.6 5.1E-07 1.1E-11 77.2 11.5 137 47-204 29-187 (257)
107 TIGR00513 accA acetyl-CoA carb 98.6 1.5E-06 3.3E-11 76.3 13.5 130 44-204 129-268 (316)
108 PLN02157 3-hydroxyisobutyryl-C 98.6 2.8E-06 6E-11 77.3 15.3 144 40-204 49-221 (401)
109 TIGR02440 FadJ fatty oxidation 98.6 1E-06 2.2E-11 85.5 13.2 145 40-203 13-186 (699)
110 PRK08184 benzoyl-CoA-dihydrodi 98.5 8.5E-07 1.8E-11 83.6 12.1 147 47-210 49-222 (550)
111 PRK12319 acetyl-CoA carboxylas 98.5 2.1E-06 4.6E-11 73.6 13.4 131 43-204 75-215 (256)
112 PRK11730 fadB multifunctional 98.5 1.5E-06 3.2E-11 84.5 13.2 145 40-203 19-190 (715)
113 TIGR02437 FadB fatty oxidation 98.5 2.1E-06 4.7E-11 83.4 13.9 144 40-203 19-190 (714)
114 PRK05724 acetyl-CoA carboxylas 98.5 1.9E-06 4.2E-11 75.8 11.9 130 44-204 129-268 (319)
115 PLN02988 3-hydroxyisobutyryl-C 98.5 5.4E-06 1.2E-10 75.0 15.2 144 40-203 21-192 (381)
116 PLN02851 3-hydroxyisobutyryl-C 98.5 3.9E-06 8.5E-11 76.4 14.1 147 38-204 52-226 (407)
117 PRK11154 fadJ multifunctional 98.5 3.2E-06 6.8E-11 82.2 14.2 145 40-203 18-191 (708)
118 PLN03230 acetyl-coenzyme A car 98.5 3E-06 6.5E-11 76.6 12.8 129 45-204 200-338 (431)
119 TIGR02441 fa_ox_alpha_mit fatt 98.4 5.9E-06 1.3E-10 80.6 15.3 144 40-203 25-198 (737)
120 PRK05617 3-hydroxyisobutyryl-C 98.4 2.2E-06 4.7E-11 76.5 11.1 140 40-203 15-187 (342)
121 CHL00198 accA acetyl-CoA carbo 98.4 5.4E-06 1.2E-10 73.0 12.4 129 45-204 133-271 (322)
122 TIGR03222 benzo_boxC benzoyl-C 98.4 3.9E-06 8.4E-11 79.1 12.3 141 47-203 45-212 (546)
123 PLN02874 3-hydroxyisobutyryl-C 98.4 8.6E-06 1.9E-10 73.7 13.5 144 40-203 23-192 (379)
124 TIGR03222 benzo_boxC benzoyl-C 98.2 2.2E-05 4.7E-10 74.1 13.5 139 47-203 295-465 (546)
125 PLN03229 acetyl-coenzyme A car 98.2 1.7E-05 3.6E-10 76.0 12.5 132 42-204 218-359 (762)
126 TIGR03134 malonate_gamma malon 98.1 8.6E-05 1.9E-09 63.1 13.4 131 47-205 45-191 (238)
127 PRK08184 benzoyl-CoA-dihydrodi 98.0 5.4E-05 1.2E-09 71.6 10.4 145 47-210 299-475 (550)
128 TIGR03133 malonate_beta malona 97.9 0.00015 3.2E-09 62.8 11.7 140 45-215 73-229 (274)
129 KOG1681 Enoyl-CoA isomerase [L 97.7 5.3E-05 1.1E-09 63.5 5.0 112 84-213 114-225 (292)
130 TIGR01117 mmdA methylmalonyl-C 97.7 0.00043 9.3E-09 65.0 10.9 89 45-137 329-431 (512)
131 COG0825 AccA Acetyl-CoA carbox 97.4 0.00045 9.8E-09 59.7 6.6 108 68-204 150-267 (317)
132 PF01039 Carboxyl_trans: Carbo 97.3 0.0014 3.1E-08 61.3 9.4 88 45-136 308-409 (493)
133 PLN02820 3-methylcrotonyl-CoA 97.3 0.0065 1.4E-07 57.8 13.4 89 44-136 379-481 (569)
134 COG0447 MenB Dihydroxynaphthoi 97.2 0.0016 3.4E-08 54.4 7.9 136 47-202 43-203 (282)
135 KOG1679 Enoyl-CoA hydratase [L 97.1 0.0013 2.9E-08 54.8 6.5 130 52-203 60-212 (291)
136 PRK05654 acetyl-CoA carboxylas 97.1 0.0081 1.7E-07 52.6 11.5 89 44-136 134-233 (292)
137 TIGR00515 accD acetyl-CoA carb 97.0 0.0081 1.8E-07 52.4 10.4 122 45-204 134-266 (285)
138 PRK07189 malonate decarboxylas 96.8 0.0063 1.4E-07 53.4 8.5 90 45-136 82-185 (301)
139 PF06833 MdcE: Malonate decarb 96.3 0.1 2.2E-06 44.2 11.7 111 64-202 60-186 (234)
140 KOG1682 Enoyl-CoA isomerase [L 95.5 0.013 2.7E-07 48.7 3.0 96 87-203 116-212 (287)
141 PLN02820 3-methylcrotonyl-CoA 95.2 0.13 2.8E-06 49.1 9.3 89 44-136 142-244 (569)
142 COG4799 Acetyl-CoA carboxylase 94.6 0.15 3.3E-06 47.9 8.0 91 44-136 337-439 (526)
143 CHL00174 accD acetyl-CoA carbo 94.5 0.18 4E-06 44.2 7.7 86 47-136 149-246 (296)
144 KOG0016 Enoyl-CoA hydratase/is 93.9 0.46 1E-05 40.7 8.8 93 88-203 99-195 (266)
145 TIGR01117 mmdA methylmalonyl-C 93.7 0.43 9.3E-06 45.1 9.1 89 44-136 95-193 (512)
146 PF08496 Peptidase_S49_N: Pept 92.7 0.2 4.3E-06 39.9 4.4 44 40-83 102-146 (155)
147 KOG1684 Enoyl-CoA hydratase [L 91.8 0.55 1.2E-05 42.2 6.6 91 38-130 48-167 (401)
148 PF01039 Carboxyl_trans: Carbo 91.8 0.47 1E-05 44.5 6.5 90 44-137 70-171 (493)
149 cd06567 Peptidase_S41 C-termin 90.9 1.8 3.9E-05 35.7 8.6 78 41-120 64-168 (224)
150 TIGR00225 prc C-terminal pepti 86.4 4.6 0.0001 35.7 8.5 72 48-120 162-258 (334)
151 PLN00049 carboxyl-terminal pro 82.6 6.1 0.00013 35.9 7.7 70 48-118 205-301 (389)
152 cd07560 Peptidase_S41_CPP C-te 82.2 11 0.00023 31.3 8.4 72 48-120 59-155 (211)
153 cd07561 Peptidase_S41_CPP_like 82.1 7.5 0.00016 33.3 7.7 70 49-119 76-183 (256)
154 COG0793 Prc Periplasmic protea 82.1 5.5 0.00012 36.5 7.2 71 48-119 214-310 (406)
155 COG4799 Acetyl-CoA carboxylase 82.0 4.2 9.1E-05 38.5 6.5 89 44-136 104-202 (526)
156 PRK11186 carboxy-terminal prot 81.4 6.3 0.00014 38.5 7.7 67 50-117 366-458 (667)
157 PLN00125 Succinyl-CoA ligase [ 80.7 4.6 9.9E-05 35.6 6.0 65 39-108 179-245 (300)
158 PTZ00187 succinyl-CoA syntheta 78.1 7.1 0.00015 34.7 6.4 67 38-108 197-264 (317)
159 smart00245 TSPc tail specific 78.0 13 0.00029 30.0 7.6 73 47-120 38-136 (192)
160 PF03572 Peptidase_S41: Peptid 77.4 12 0.00027 28.8 7.0 70 50-120 15-114 (169)
161 COG0074 SucD Succinyl-CoA synt 76.9 7.8 0.00017 33.9 6.1 66 54-131 187-253 (293)
162 PLN02727 NAD kinase 76.6 12 0.00026 37.9 8.0 99 18-116 232-361 (986)
163 TIGR00377 ant_ant_sig anti-ant 75.0 24 0.00052 25.1 7.6 35 39-73 14-48 (108)
164 PF13607 Succ_CoA_lig: Succiny 75.0 8.4 0.00018 29.9 5.3 63 38-108 29-93 (138)
165 cd07563 Peptidase_S41_IRBP Int 73.0 22 0.00048 29.9 7.9 65 53-120 83-181 (250)
166 COG0777 AccD Acetyl-CoA carbox 70.8 24 0.00051 30.8 7.5 79 51-137 142-235 (294)
167 PF00549 Ligase_CoA: CoA-ligas 70.4 14 0.0003 29.3 5.6 56 54-109 60-121 (153)
168 KOG3877 NADH:ubiquinone oxidor 68.6 6.3 0.00014 34.7 3.6 45 37-82 70-117 (393)
169 COG0757 AroQ 3-dehydroquinate 67.5 15 0.00032 28.8 5.0 45 54-103 55-99 (146)
170 TIGR02886 spore_II_AA anti-sig 66.9 11 0.00024 27.0 4.2 35 39-73 10-44 (106)
171 PRK06091 membrane protein FdrA 65.0 19 0.00041 34.5 6.2 54 55-110 240-293 (555)
172 PLN02522 ATP citrate (pro-S)-l 62.7 26 0.00057 33.9 6.9 66 38-108 195-262 (608)
173 KOG0540 3-Methylcrotonyl-CoA c 56.7 44 0.00096 31.3 6.9 85 45-134 363-461 (536)
174 COG1512 Beta-propeller domains 55.5 30 0.00064 30.1 5.4 54 38-91 34-89 (271)
175 PRK12435 ferrochelatase; Provi 55.3 70 0.0015 28.2 7.9 84 11-96 217-307 (311)
176 TIGR01019 sucCoAalpha succinyl 54.8 38 0.00082 29.6 6.1 66 38-108 171-237 (286)
177 PRK05678 succinyl-CoA syntheta 51.6 51 0.0011 28.9 6.3 65 39-108 174-239 (291)
178 cd07041 STAS_RsbR_RsbS_like Su 47.9 99 0.0021 22.0 7.9 80 39-118 12-93 (109)
179 COG1366 SpoIIAA Anti-anti-sigm 46.1 36 0.00077 25.0 4.0 40 40-81 16-55 (117)
180 PRK14647 hypothetical protein; 45.5 33 0.00071 27.2 3.9 82 7-103 20-106 (159)
181 TIGR02364 dha_pts dihydroxyace 45.5 1.3E+02 0.0029 22.8 7.1 63 37-102 27-92 (125)
182 COG3904 Predicted periplasmic 44.2 66 0.0014 27.1 5.5 57 41-101 51-107 (245)
183 PRK14635 hypothetical protein; 43.5 34 0.00074 27.2 3.7 62 6-81 16-85 (162)
184 PF01740 STAS: STAS domain; I 43.3 48 0.001 23.9 4.3 71 39-109 11-91 (117)
185 cd06844 STAS Sulphate Transpor 42.5 45 0.00097 23.6 3.9 37 39-75 10-46 (100)
186 COG0167 PyrD Dihydroorotate de 42.4 1.6E+02 0.0035 26.1 8.1 66 55-120 111-189 (310)
187 PRK14637 hypothetical protein; 42.2 41 0.0009 26.5 3.9 82 7-103 20-105 (151)
188 PRK14639 hypothetical protein; 41.7 46 0.001 25.8 4.1 82 7-103 9-95 (140)
189 PRK14632 hypothetical protein; 41.4 51 0.0011 26.5 4.4 82 7-103 20-105 (172)
190 TIGR02717 AcCoA-syn-alpha acet 41.3 52 0.0011 30.4 5.1 65 38-110 178-244 (447)
191 PRK14640 hypothetical protein; 40.0 51 0.0011 25.9 4.2 82 7-103 18-104 (152)
192 cd07562 Peptidase_S41_TRI Tric 39.2 2.2E+02 0.0048 24.1 8.4 81 35-120 84-187 (266)
193 PRK14643 hypothetical protein; 38.6 54 0.0012 26.2 4.1 82 7-103 21-111 (164)
194 KOG3093 5-formyltetrahydrofola 37.9 48 0.001 27.3 3.7 52 44-95 23-74 (200)
195 TIGR00237 xseA exodeoxyribonuc 36.9 2E+02 0.0044 26.5 8.2 85 40-130 159-249 (432)
196 PHA02097 hypothetical protein 36.1 25 0.00053 22.7 1.4 16 67-82 8-23 (59)
197 PRK14630 hypothetical protein; 36.0 89 0.0019 24.3 4.9 82 7-103 20-104 (143)
198 PRK14641 hypothetical protein; 35.5 67 0.0014 26.0 4.2 80 7-101 21-109 (173)
199 PRK14638 hypothetical protein; 35.4 65 0.0014 25.3 4.1 82 7-103 20-107 (150)
200 PRK14633 hypothetical protein; 34.8 77 0.0017 24.8 4.4 81 7-102 16-100 (150)
201 TIGR01037 pyrD_sub1_fam dihydr 34.3 2.2E+02 0.0048 24.5 7.7 55 50-104 100-165 (300)
202 PF01381 HTH_3: Helix-turn-hel 34.1 64 0.0014 19.9 3.3 31 163-193 13-43 (55)
203 PF08503 DapH_N: Tetrahydrodip 33.5 48 0.001 23.5 2.7 26 84-109 2-29 (83)
204 PF04273 DUF442: Putative phos 33.2 1.3E+02 0.0028 22.2 5.2 48 66-113 56-103 (110)
205 KOG0069 Glyoxylate/hydroxypyru 31.8 1.2E+02 0.0026 27.2 5.6 79 11-94 188-269 (336)
206 cd01026 TOPRIM_OLD TOPRIM_OLD: 31.1 1.1E+02 0.0025 21.5 4.5 67 35-108 1-67 (97)
207 PRK02506 dihydroorotate dehydr 30.9 3.1E+02 0.0067 24.0 8.1 40 68-107 120-168 (310)
208 smart00250 PLEC Plectin repeat 30.1 35 0.00076 20.0 1.4 17 184-200 20-36 (38)
209 PF01220 DHquinase_II: Dehydro 29.9 81 0.0018 24.6 3.7 45 54-103 55-99 (140)
210 KOG0572 Glutamine phosphoribos 29.7 59 0.0013 29.9 3.3 51 25-79 344-395 (474)
211 PRK14631 hypothetical protein; 29.4 89 0.0019 25.2 4.0 57 46-103 66-124 (174)
212 cd04740 DHOD_1B_like Dihydroor 28.5 3.7E+02 0.008 22.9 8.1 52 52-104 101-162 (296)
213 TIGR00282 metallophosphoestera 28.5 1.2E+02 0.0025 26.3 4.9 66 39-104 2-67 (266)
214 PF02601 Exonuc_VII_L: Exonucl 28.3 3E+02 0.0065 23.9 7.6 77 50-130 55-137 (319)
215 PRK00286 xseA exodeoxyribonucl 28.1 4.7E+02 0.01 23.9 11.9 77 49-132 175-256 (438)
216 PRK13170 hisH imidazole glycer 28.1 49 0.0011 26.9 2.4 28 78-105 45-79 (196)
217 PRK07259 dihydroorotate dehydr 27.8 3.5E+02 0.0076 23.2 7.8 54 51-104 102-165 (301)
218 PF14538 Raptor_N: Raptor N-te 27.6 1.6E+02 0.0035 23.2 5.2 69 43-114 66-150 (154)
219 PF00681 Plectin: Plectin repe 27.5 30 0.00065 21.2 0.8 18 183-200 19-36 (45)
220 COG3093 VapI Plasmid maintenan 27.3 85 0.0018 23.3 3.2 34 162-195 26-59 (104)
221 PRK06781 amidophosphoribosyltr 27.2 1E+02 0.0022 28.9 4.6 38 37-78 348-386 (471)
222 COG0779 Uncharacterized protei 26.6 1.4E+02 0.0031 23.6 4.6 41 41-81 41-85 (153)
223 TIGR01579 MiaB-like-C MiaB-lik 25.5 3E+02 0.0066 24.9 7.3 71 41-111 2-78 (414)
224 PRK06388 amidophosphoribosyltr 24.9 80 0.0017 29.6 3.4 38 37-78 356-394 (474)
225 PRK14642 hypothetical protein; 24.3 1.4E+02 0.003 24.7 4.4 53 47-101 52-105 (197)
226 cd07043 STAS_anti-anti-sigma_f 24.2 2.3E+02 0.005 19.1 7.8 79 39-118 10-90 (99)
227 TIGR03070 couple_hipB transcri 23.4 1.8E+02 0.0039 17.5 4.1 31 162-192 18-48 (58)
228 PRK00092 ribosome maturation p 22.5 1.1E+02 0.0024 23.9 3.4 57 45-102 46-104 (154)
229 TIGR01016 sucCoAbeta succinyl- 22.3 2.7E+02 0.0059 25.0 6.3 52 52-105 295-351 (386)
230 PRK14645 hypothetical protein; 21.8 1.6E+02 0.0036 23.2 4.2 80 7-101 21-107 (154)
231 COG1105 FruK Fructose-1-phosph 21.7 1.9E+02 0.0042 25.6 5.0 69 16-87 107-176 (310)
232 COG1160 Predicted GTPases [Gen 21.1 2.8E+02 0.006 26.0 6.0 39 66-104 82-120 (444)
233 TIGR02607 antidote_HigA addict 20.7 2.1E+02 0.0045 18.9 4.1 31 162-192 21-51 (78)
234 TIGR00673 cynS cyanate hydrata 20.2 1E+02 0.0022 24.4 2.7 30 165-194 27-56 (150)
235 PRK14646 hypothetical protein; 20.2 2E+02 0.0044 22.6 4.4 81 7-102 19-106 (155)
236 TIGR02675 tape_meas_nterm tape 20.2 2.4E+02 0.0052 19.2 4.3 28 161-189 46-73 (75)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.1e-49 Score=320.77 Aligned_cols=181 Identities=62% Similarity=0.964 Sum_probs=176.3
Q ss_pred cchhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe
Q 027911 25 LGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 104 (217)
Q Consensus 25 ~~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~ 104 (217)
.++.+||+++++++|+|+|.|+|++..++.++.+|.+++.+++.++|.|+||||||+|++|++|||.|+..++||+|+|.
T Consensus 14 ~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~ 93 (200)
T COG0740 14 GERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICM 93 (200)
T ss_pred CCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCc
Q 027911 105 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 184 (217)
Q Consensus 105 g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~ 184 (217)
|.|||||++|+++|++++|++.|||++|+|||+++..|+.+|++.+++++.+.+..+.++|+++||++.+++.+.+++++
T Consensus 94 G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~ 173 (200)
T COG0740 94 GQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDT 173 (200)
T ss_pred cHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCCCc
Q 027911 185 FMSAEEAKDYGLIDGVVMNPH 205 (217)
Q Consensus 185 ~lta~EA~~~GliD~I~~~~~ 205 (217)
|||++||++|||||+|.+...
T Consensus 174 ~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 174 WMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred cCCHHHHHHcCCcceeccccc
Confidence 999999999999999988654
No 2
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=9.2e-48 Score=320.27 Aligned_cols=186 Identities=52% Similarity=0.850 Sum_probs=177.2
Q ss_pred CCCCccc------chhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 027911 19 GPPPMLL------GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 92 (217)
Q Consensus 19 ~~~~~~~------~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I 92 (217)
++.|+.. ++++|++++|+++|+|+|.|+|++.+++.++++|.+|+..++.++|+|+||||||+|++|++|||.|
T Consensus 29 ~~~p~~~~~~~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m 108 (221)
T PRK14514 29 YLNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTM 108 (221)
T ss_pred cccceeeeeCCCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHH
Confidence 4555554 4589999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.++.||+|+|.|.|||+|++|+++|++++|+|.|||++|+|+|+++..|+..|++.+++++.+.++.+.++|+++||++
T Consensus 109 ~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~ 188 (221)
T PRK14514 109 QFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP 188 (221)
T ss_pred HhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~ 204 (217)
.+++.+++++++|||++||+++||||+|+++.
T Consensus 189 ~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 189 FDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 99999999999999999999999999998753
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.9e-47 Score=314.67 Aligned_cols=178 Identities=52% Similarity=0.839 Sum_probs=173.3
Q ss_pred hhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecc
Q 027911 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 106 (217)
Q Consensus 27 ~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~ 106 (217)
+|.|++++|+++|+||+.|+|++++++.++++|.+++.+++.++|+|+||||||++.+|++|||.|+.++.||+|+|.|+
T Consensus 16 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 16 RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGI 95 (201)
T ss_pred cccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEee
Confidence 67899999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCccc
Q 027911 107 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 186 (217)
Q Consensus 107 aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~l 186 (217)
|||+|++|+++|++++|++.|||++|+|+|+++..|+..|++.+++++.+.++.+.++|+++||++.+++.+++++++||
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~m 175 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFM 175 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCC
Q 027911 187 SAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 187 ta~EA~~~GliD~I~~~~ 204 (217)
||+||+++||||+|+++.
T Consensus 176 sa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 176 SPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred CHHHHHHcCCCcEEeccC
Confidence 999999999999998854
No 4
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.8e-47 Score=314.11 Aligned_cols=183 Identities=40% Similarity=0.736 Sum_probs=175.9
Q ss_pred cccchhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 027911 23 MLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 23 ~~~~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~ 102 (217)
.-..+|.|++++++++|+|||+|+|++++++.++++|.+++.+++.++|.|+||||||+++++++|||.|+.++.||+|+
T Consensus 15 ~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv 94 (200)
T CHL00028 15 EEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTI 94 (200)
T ss_pred CCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEE
Confidence 34567889999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EecccccHHHHHHhcCCCCceeecCCcceeeecCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhC
Q 027911 103 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG-AQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTD 181 (217)
Q Consensus 103 v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~-~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 181 (217)
|.|.|+|+|++|+++|++++|++.|||++|+|+|+++ ..|+..|+..+++++.+.++.+.++|+++||++.+++.++++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~ 174 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDME 174 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999988899999999999999988 899999999999999999999999999999999999999999
Q ss_pred CCcccCHHHHHHcCCceeecCCCc
Q 027911 182 RDFFMSAEEAKDYGLIDGVVMNPH 205 (217)
Q Consensus 182 ~~~~lta~EA~~~GliD~I~~~~~ 205 (217)
+++|||++||+++||||+|+++..
T Consensus 175 r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 175 RDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred cCccCCHHHHHHcCCCcEEeecCc
Confidence 999999999999999999988654
No 5
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-47 Score=318.92 Aligned_cols=186 Identities=59% Similarity=0.931 Sum_probs=180.2
Q ss_pred cchhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe
Q 027911 25 LGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 104 (217)
Q Consensus 25 ~~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~ 104 (217)
-++|+|++|.||++|||++.++|++.+++.+++||.+|+.+++.|+|+++||||||++.++++|||.|+..+.||.|+|.
T Consensus 79 ~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~ 158 (275)
T KOG0840|consen 79 RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICV 158 (275)
T ss_pred CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeeh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCc
Q 027911 105 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 184 (217)
Q Consensus 105 g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~ 184 (217)
|+|||+|.+++++|.+++|++.|||++|+|||.++..|...|+..+++|+.+.++.+.++|+++||++.+++.+.+++++
T Consensus 159 G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~ 238 (275)
T KOG0840|consen 159 GLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDR 238 (275)
T ss_pred hhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCCCcccchH
Q 027911 185 FMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 185 ~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
+|+++||+++||||+|++++.+...+
T Consensus 239 fmsa~EA~eyGliD~v~~~p~~~~~~ 264 (275)
T KOG0840|consen 239 FMSAEEAKEYGLIDKVIDHPPETRVD 264 (275)
T ss_pred cCCHHHHHHhcchhhhhcCCcccccc
Confidence 99999999999999999977666544
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.7e-46 Score=308.38 Aligned_cols=178 Identities=64% Similarity=0.967 Sum_probs=172.6
Q ss_pred hhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecc
Q 027911 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 106 (217)
Q Consensus 27 ~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~ 106 (217)
++.|++++|+++|+||+.|+|++++++.++++|.+++.+++.++|+|+||||||+|.+|++|||.|+.++.||+|+|.|.
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 55889999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCccc
Q 027911 107 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFM 186 (217)
Q Consensus 107 aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~l 186 (217)
|||+|++|+++|++++|+|.|||++|+|+|+++..|+..|++.+++++.+.++.+.++|+++||++.+++.+++++++||
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~m 173 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFM 173 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCC
Q 027911 187 SAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 187 ta~EA~~~GliD~I~~~~ 204 (217)
|++||+++||||+|+++.
T Consensus 174 sa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 174 SPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CHHHHHHcCCCcEEeccC
Confidence 999999999999998753
No 7
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.3e-46 Score=311.39 Aligned_cols=179 Identities=47% Similarity=0.760 Sum_probs=172.0
Q ss_pred hhhhHHHhhhcCcEEEEccccCcc----------hHHHHHHHHHHhhhcCCCCceEEEEcCCCCc---------HHHHHH
Q 027911 27 RFQNVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGS---------VTAGMA 87 (217)
Q Consensus 27 ~~~~~~s~~~~~~vI~i~G~I~~~----------~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~---------v~~~~~ 87 (217)
.+.|+++.|+++|+|+|.|+|+++ .++.++++|.+++.+++.++|.|+||||||+ +.++++
T Consensus 19 ~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla 98 (222)
T PRK12552 19 PPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA 98 (222)
T ss_pred CCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH
Confidence 346899999999999999999999 9999999999999999899999999999988 778899
Q ss_pred HHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 027911 88 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSY 167 (217)
Q Consensus 88 I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~ 167 (217)
|||.|+.++.||+|+|.|.|||+|++|+++|++++|++.|||++|+|+|+++..|+..|++.+++++.+.++.+.++|++
T Consensus 99 IyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~ 178 (222)
T PRK12552 99 ICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSR 178 (222)
T ss_pred HHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCc
Q 027911 168 HTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPH 205 (217)
Q Consensus 168 ~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~ 205 (217)
+||++.+++.+++++++|||++||++|||||+|+++..
T Consensus 179 ~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 179 NTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred HHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999999998643
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.6e-44 Score=296.43 Aligned_cols=177 Identities=67% Similarity=1.054 Sum_probs=170.8
Q ss_pred chhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEec
Q 027911 26 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 105 (217)
Q Consensus 26 ~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g 105 (217)
+++.|++++++++|+|+++|+|++.+++.++.+|.+++.+++.+.|+|+||||||+++++++|||.|+.++.||+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 36789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcc
Q 027911 106 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 185 (217)
Q Consensus 106 ~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 185 (217)
.|+|+|++|+++|++++|+|.|+|++|+|+|+++..|+..+++.+++++.++++.+.++|+++||++.+++++++++++|
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~ 173 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFF 173 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999888999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecC
Q 027911 186 MSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 186 lta~EA~~~GliD~I~~ 202 (217)
||++||+++||||+|++
T Consensus 174 lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 174 MSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CcHHHHHHcCCccEEec
Confidence 99999999999999975
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=297.07 Aligned_cols=180 Identities=39% Similarity=0.690 Sum_probs=171.2
Q ss_pred HHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccH
Q 027911 31 VLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 110 (217)
Q Consensus 31 ~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSa 110 (217)
++++++++|+|+|.|+|++++++.+.++|.+++..++.++|+|+||||||+|+++++|||.|+.++.||+|+|.|.|+|+
T Consensus 16 ~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaSa 95 (197)
T PRK14512 16 SLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVASA 95 (197)
T ss_pred HHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHhH
Confidence 46889999999999999999999999999999886778999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHH
Q 027911 111 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEE 190 (217)
Q Consensus 111 g~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~E 190 (217)
|++|+++|++++|++.|||++|+|+|+++..|+..+++..++++.+.++.+..+|+++||++.+++.+++++++|||++|
T Consensus 96 aslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~E 175 (197)
T PRK14512 96 AALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSS 175 (197)
T ss_pred HHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHH
Confidence 99999999999999999999999999988899999999888999999999999999999999999999999999999999
Q ss_pred HHHcCCceeecCCCcccchH
Q 027911 191 AKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 191 A~~~GliD~I~~~~~~~l~~ 210 (217)
|+++||||+|+++..+.++.
T Consensus 176 A~~yGliD~I~~~~~~l~~~ 195 (197)
T PRK14512 176 AVKYGLVFEVVETRLELEEF 195 (197)
T ss_pred HHHcCCccEeecCcHHhHhh
Confidence 99999999999987776543
No 10
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.8e-44 Score=293.59 Aligned_cols=178 Identities=44% Similarity=0.737 Sum_probs=168.5
Q ss_pred chhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEec
Q 027911 26 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 105 (217)
Q Consensus 26 ~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g 105 (217)
++|+|++++++++++|+|.|+|++++++.++++|.+++++++.+.|+|+||||||++.++++|+|.|+.++.||+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 38999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcc
Q 027911 106 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 185 (217)
Q Consensus 106 ~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 185 (217)
.|+|+|++|+++|++.+|++.|+|.+|+|+|.....|+..++....+++.+.++.+.++|+++||++++++.+++++++|
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 163 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTW 163 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEE
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCcc
Confidence 99999999999999988999999999999999998999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCC
Q 027911 186 MSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 186 lta~EA~~~GliD~I~~~ 203 (217)
|+|+||+++||||+|+++
T Consensus 164 l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 164 LSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEHHHHHHHTSSSEEESS
T ss_pred ccHHHHHHcCCCCEeccC
Confidence 999999999999999875
No 11
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.5e-43 Score=292.52 Aligned_cols=182 Identities=64% Similarity=1.013 Sum_probs=175.0
Q ss_pred chhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEec
Q 027911 26 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 105 (217)
Q Consensus 26 ~~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g 105 (217)
+.|+|++++++++|+|+|+|+|++++++.++++|.+++.+++.+.|+|+||||||+++++++|||.|+.++.||+|++.|
T Consensus 19 ~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 98 (200)
T PRK00277 19 ERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIG 98 (200)
T ss_pred cccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 57899999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcc
Q 027911 106 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 185 (217)
Q Consensus 106 ~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 185 (217)
.|+|+|++|+++|++++|++.|+|.+|+|+|+++..|+..+++.+++++.++++.+.++|+++||++.+++++++++++|
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 178 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNF 178 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999888999999999999999888999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHcCCceeecCCCccc
Q 027911 186 MSAEEAKDYGLIDGVVMNPHKI 207 (217)
Q Consensus 186 lta~EA~~~GliD~I~~~~~~~ 207 (217)
||++||+++||||+|+++..++
T Consensus 179 lsa~EA~e~GliD~Ii~~~~~~ 200 (200)
T PRK00277 179 MSAEEAKEYGLIDEVLTKRKEA 200 (200)
T ss_pred ccHHHHHHcCCccEEeecCCCC
Confidence 9999999999999999987653
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.4e-42 Score=288.10 Aligned_cols=180 Identities=56% Similarity=0.916 Sum_probs=171.7
Q ss_pred hhhhHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecc
Q 027911 27 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 106 (217)
Q Consensus 27 ~~~~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~ 106 (217)
.+.|++++++++|+|+|+|+|++.+++.++++|.+++++++.++|+|+||||||++.++++|||.|+.++.||+|+|.|.
T Consensus 24 ~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~ 103 (207)
T PRK12553 24 KESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQ 103 (207)
T ss_pred ccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 34789999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhcCCCCceeecCCcceeeecCC--CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCc
Q 027911 107 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL--GGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDF 184 (217)
Q Consensus 107 aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~--~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~ 184 (217)
|+|+|++|+++|++++|++.|+|++|+|+|+ .+..|+..+++.+.+++.+.++.+.+.|+++||++.+++.+++++++
T Consensus 104 aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~ 183 (207)
T PRK12553 104 AASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDK 183 (207)
T ss_pred hhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCc
Confidence 9999999999999878999999999999998 45689999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHcCCceeecCCCcc
Q 027911 185 FMSAEEAKDYGLIDGVVMNPHK 206 (217)
Q Consensus 185 ~lta~EA~~~GliD~I~~~~~~ 206 (217)
|||++||+++||||+|+++.++
T Consensus 184 ~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 184 WLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred cccHHHHHHcCCccEEcCchhh
Confidence 9999999999999999998765
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.3e-42 Score=280.58 Aligned_cols=171 Identities=65% Similarity=1.072 Sum_probs=165.0
Q ss_pred hHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEeccccc
Q 027911 30 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 109 (217)
Q Consensus 30 ~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaS 109 (217)
|++++++++|+|+++|+|++++++.++++|.+++.++..++|+|+||||||++.++++||+.|+.++.||+|++.|.|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 57899999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHH
Q 027911 110 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAE 189 (217)
Q Consensus 110 ag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~ 189 (217)
+|++|+++|++++|++.|+|.+|+|+|+.+..|+..++...++++.++++.+.++|+++||++.+++.+++++++|||++
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999997669999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 027911 190 EAKDYGLIDGV 200 (217)
Q Consensus 190 EA~~~GliD~I 200 (217)
||+++||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=3e-41 Score=270.43 Aligned_cols=162 Identities=50% Similarity=0.784 Sum_probs=157.0
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcC
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 118 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag 118 (217)
|+|+|+|+|++.+++.+.++|.+++.+++.++|+|+||||||++.++++||+.|+.++.||+|++.|.|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 68999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCce
Q 027911 119 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLID 198 (217)
Q Consensus 119 ~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD 198 (217)
++++|++.|++.+|+|+|+++..|+..|++...+++.+.++.|.++|+++||++.+++.+++++++|||++||+++||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 98889999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 027911 199 GV 200 (217)
Q Consensus 199 ~I 200 (217)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=8.1e-34 Score=228.81 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=141.0
Q ss_pred EEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe---cccccHHHHHHh
Q 027911 40 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 116 (217)
Q Consensus 40 vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~---g~aaSag~~Ia~ 116 (217)
+|.++|+|++.+...+.+.|..+.. ++.+.|+|+||||||++.+++.|++.|+.+++||+++|. |.|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 6889999999999999999987665 568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCceeecCCcceeeecCCCCCCCC-----cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHH
Q 027911 117 AGTKGKRYSLPNSRIMIHQPLGGAQGG-----QSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEA 191 (217)
Q Consensus 117 ag~~~~r~~~p~s~i~ih~~~~~~~G~-----~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA 191 (217)
+|++ |+|.|+|++|.|+|..+ .|+ ..+.+. ...+...+.. +++++|++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki----~~~~~~~~r~-~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKI----TNYFIAYIKS-LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHH----HHHHHHHHHH-HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9999 99999999999999754 344 222222 2333334444 699999999999999999999999999
Q ss_pred HHcCCceeecCCCcccchH
Q 027911 192 KDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 192 ~~~GliD~I~~~~~~~l~~ 210 (217)
+++|+||.|.++.+|.|++
T Consensus 154 ~~~G~iD~ia~~~~~ll~~ 172 (172)
T cd07015 154 LKYGVIEVVARDINELLKK 172 (172)
T ss_pred HHcCCceeeeCCHHHHhhC
Confidence 9999999999999888763
No 16
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=1.4e-33 Score=225.16 Aligned_cols=156 Identities=29% Similarity=0.412 Sum_probs=147.1
Q ss_pred EEEEccccCc---chHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHh
Q 027911 40 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 116 (217)
Q Consensus 40 vI~i~G~I~~---~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ 116 (217)
.|+|+|+|+. .+.+.+.+.|..+..+ +.|.|+||||||++.+++.|++.|+.+++||++++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5899999999 7899999999876653 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCC
Q 027911 117 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGL 196 (217)
Q Consensus 117 ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~Gl 196 (217)
+||. |++.|++.|++|+|.....|+..++....+++.+.++.+.+.|++++|++.+++.+++.++.||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999988888888888888889999999999999999999999999999999999999999999
Q ss_pred ceee
Q 027911 197 IDGV 200 (217)
Q Consensus 197 iD~I 200 (217)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=100.00 E-value=1e-31 Score=214.13 Aligned_cols=159 Identities=33% Similarity=0.538 Sum_probs=146.6
Q ss_pred EEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCC
Q 027911 40 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 119 (217)
Q Consensus 40 vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~ 119 (217)
||+++|+|++.+.+.+.+.|+.++.+++.+.|+|++|||||++.++..|++.|+.+++||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCcceeeecCCCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCc
Q 027911 120 KGKRYSLPNSRIMIHQPLGGAQGGQ--SDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLI 197 (217)
Q Consensus 120 ~~~r~~~p~s~i~ih~~~~~~~G~~--~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~Gli 197 (217)
+ |++.|++.+++|.|.....+.. .+.+...+.+..+++.|.+.++++||++.+++.+.+.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 9 9999999999999987655544 45554556677788899999999999999999999999999999999999999
Q ss_pred eee
Q 027911 198 DGV 200 (217)
Q Consensus 198 D~I 200 (217)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.97 E-value=8.1e-30 Score=208.61 Aligned_cols=168 Identities=21% Similarity=0.269 Sum_probs=141.4
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe---cccccHHHHHH
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL 115 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~---g~aaSag~~Ia 115 (217)
-+|.|+|.|++...+.+.+.|+.+..+ +.+.|+|+||||||++.++.+|++.|+.+++||++.+. |.|+|+|++|+
T Consensus 2 ~vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ia 80 (187)
T cd07020 2 YVLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYIL 80 (187)
T ss_pred EEEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHH
Confidence 368999999999999999999988764 48999999999999999999999999999999999998 99999999999
Q ss_pred hcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcC
Q 027911 116 SAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYG 195 (217)
Q Consensus 116 ~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~G 195 (217)
++||. |++.|+|+|++|.|.....+...+...+.+.+..... +...+++++|++.+.+.+++..+.||+++||+++|
T Consensus 81 la~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~G 157 (187)
T cd07020 81 LAAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLG 157 (187)
T ss_pred HhCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcC
Confidence 99999 9999999999999974433322233333343444443 45567899999999999988888999999999999
Q ss_pred CceeecCCCcccchH
Q 027911 196 LIDGVVMNPHKILQP 210 (217)
Q Consensus 196 liD~I~~~~~~~l~~ 210 (217)
|+|+|+++.++.+++
T Consensus 158 lvd~v~~~~~~~~~~ 172 (187)
T cd07020 158 VIDLIAADLNELLKK 172 (187)
T ss_pred CcccccCCHHHHHHH
Confidence 999999876555543
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.97 E-value=1.6e-29 Score=205.27 Aligned_cols=163 Identities=21% Similarity=0.340 Sum_probs=141.7
Q ss_pred EEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCC
Q 027911 40 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 119 (217)
Q Consensus 40 vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~ 119 (217)
+|.++|+|++.+.+.+.+.|..+..++ .+.|+|+||||||.+.++..|++.|+++++||++++.|.|+|+|++|+++||
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 689999999999999999998877655 8999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCC-------------ccc
Q 027911 120 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRD-------------FFM 186 (217)
Q Consensus 120 ~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~-------------~~l 186 (217)
+ ++|.|+|.++.|.|.....+...+ .|....+...+.. +++++|++.+.++.+++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~~~~~~-~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWRAKMRA-AAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh----HHHHHHHHHHHHH-HHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 9 999999999999997654332211 2323344545555 6999999999999999988 599
Q ss_pred CHHHHHHcCCceeecCCCcccchH
Q 027911 187 SAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 187 ta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
|++||+++|++|.|..+.++.|++
T Consensus 155 ta~eA~~~g~~d~ia~~~~~ll~~ 178 (178)
T cd07021 155 TADEALKVGYAEGIAGSLDELLVK 178 (178)
T ss_pred CHHHHHHhCCeEEEECCHHHHhhC
Confidence 999999999999999998887753
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.94 E-value=7.7e-26 Score=198.88 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=139.4
Q ss_pred cEEEEccccCcch-------HHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCC--CcEEEEeccccc
Q 027911 39 RIIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAAS 109 (217)
Q Consensus 39 ~vI~i~G~I~~~~-------~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~--pV~t~v~g~aaS 109 (217)
.+|.++|.|.... .+.+.+.|+.+..++++++|.|+||||||++.++..|++.|++++. ||+++|.++|||
T Consensus 62 avi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AAS 141 (317)
T COG0616 62 AVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAAS 141 (317)
T ss_pred EEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecc
Confidence 4688999999765 6778888998999999999999999999999999999999999974 799999999999
Q ss_pred HHHHHHhcCCCCceeecCCcceeeecCCCC------------------CCCCcch------------HHHHHHHHHHHHH
Q 027911 110 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG------------------AQGGQSD------------IDLQANEMLHHKA 159 (217)
Q Consensus 110 ag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~------------------~~G~~~~------------~~~~~~~l~~~~~ 159 (217)
+||||+|+||+ |+|.|+|.++.-.+... ..|..++ .....+.+++.++
T Consensus 142 GGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~ 219 (317)
T COG0616 142 GGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYD 219 (317)
T ss_pred hhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999 99999998764322110 1222211 1222244556678
Q ss_pred HHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHh
Q 027911 160 NLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAA 214 (217)
Q Consensus 160 ~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~ 214 (217)
.|.+.+++.|+++.+.+.+..++.+| ++++|+++||||++++ .+++++.....
T Consensus 220 ~F~~~V~~~R~~~~~~~~~~a~g~v~-~g~~A~~~gLVDelg~-~~~av~~~~~~ 272 (317)
T COG0616 220 EFVDKVAEGRGLSDEAVDKLATGRVW-TGQQALELGLVDELGG-LDDAVKDAAEL 272 (317)
T ss_pred HHHHHHHhcCCCChhHHHHHhcccee-cHHHhhhcCCchhcCC-HHHHHHHHHHh
Confidence 89999999999999998888888777 8999999999999977 56665555544
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.93 E-value=1.9e-24 Score=179.51 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=139.5
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCcEEEEecccccHHHHHHh
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLS 116 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~--~pV~t~v~g~aaSag~~Ia~ 116 (217)
.+|+++|+|+ .+.+.+.+.|+.+..+++++.|+|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|++
T Consensus 3 ~vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~ 81 (207)
T TIGR00706 3 AILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAM 81 (207)
T ss_pred EEEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHh
Confidence 4799999998 55678888999888888999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCceeecCCcceeeecCCCC------------------CCCCcc-------hH-----HHHHHHHHHHHHHHHHHHH
Q 027911 117 AGTKGKRYSLPNSRIMIHQPLGG------------------AQGGQS-------DI-----DLQANEMLHHKANLNGYLS 166 (217)
Q Consensus 117 ag~~~~r~~~p~s~i~ih~~~~~------------------~~G~~~-------~~-----~~~~~~l~~~~~~~~~~~a 166 (217)
+||+ |+|.|++.++...+... ..|+.+ ++ +.....+...++.|.+.++
T Consensus 82 aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va 159 (207)
T TIGR00706 82 AADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVA 159 (207)
T ss_pred cCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999998654322110 112111 11 1122334556778889999
Q ss_pred HhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHhcC
Q 027911 167 YHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAAG 216 (217)
Q Consensus 167 ~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~~~ 216 (217)
+.||++.+.+++++++..| +++||+++||||+|.. .+++.+.+...+|
T Consensus 160 ~~R~~~~~~~~~~~~~~~~-~~~~A~~~gLvD~i~~-~~~~~~~~~~~~~ 207 (207)
T TIGR00706 160 KGRNLPVEDVKKFADGRVF-TGRQALKLRLVDKLGT-EDDALKWLAELSG 207 (207)
T ss_pred hcCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCC-HHHHHHHHHHhcC
Confidence 9999999999998888765 9999999999999964 7777666655443
No 22
>PRK10949 protease 4; Provisional
Probab=99.91 E-value=2.3e-23 Score=196.69 Aligned_cols=174 Identities=21% Similarity=0.212 Sum_probs=137.9
Q ss_pred cEEEEccccCcch-------HHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCcEEEEecccc
Q 027911 39 RIIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAA 108 (217)
Q Consensus 39 ~vI~i~G~I~~~~-------~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~---~~pV~t~v~g~aa 108 (217)
.||+++|+|.+.. .+.+..+|+.+..++++++|+|+||||||++.++..|++.|+.. ++||++++.++||
T Consensus 329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 4789999997642 56788999999999999999999999999999999999999765 4899999999999
Q ss_pred cHHHHHHhcCCCCceeecCCcceeeecCCC------------C------CCCCcc-----------hHHHHHHHHHHHHH
Q 027911 109 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQS-----------DIDLQANEMLHHKA 159 (217)
Q Consensus 109 Sag~~Ia~ag~~~~r~~~p~s~i~ih~~~~------------~------~~G~~~-----------~~~~~~~~l~~~~~ 159 (217)
|+||||+++||+ +++.|+|..+.-.... + ..|... +.+.....+++.++
T Consensus 409 SggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~ 486 (618)
T PRK10949 409 SGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYK 486 (618)
T ss_pred cHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 9999988754311100 0 011111 11112233455678
Q ss_pred HHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHhcC
Q 027911 160 NLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAAG 216 (217)
Q Consensus 160 ~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~~~ 216 (217)
.|.+.+++.|+++.+++.++.++.+| |+++|+++||||+++. .+++++.....|+
T Consensus 487 ~F~~~Va~~R~~~~~~v~~ia~Grv~-tg~~A~~~GLVD~lG~-~~~ai~~a~~~a~ 541 (618)
T PRK10949 487 RFITLVADSRHKTPEQIDKIAQGHVW-TGQDAKANGLVDSLGD-FDDAVAKAAELAK 541 (618)
T ss_pred HHHHHHHhhCCCCHHHHHHHhcCCcc-cHHHHHHcCCCccCCC-HHHHHHHHHHHcC
Confidence 89999999999999999988887666 9999999999999966 7777776665554
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.91 E-value=3.2e-23 Score=195.26 Aligned_cols=172 Identities=21% Similarity=0.236 Sum_probs=137.0
Q ss_pred EEEEccccCcc-------hHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCcEEEEeccccc
Q 027911 40 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAAS 109 (217)
Q Consensus 40 vI~i~G~I~~~-------~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~---~~pV~t~v~g~aaS 109 (217)
+|+++|+|.+. ..+.+.+.|+.+..++++++|+|+||||||++.++..|+++|+.. ++||++++.|.|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 79999999853 246778889888888899999999999999999999999998755 48999999999999
Q ss_pred HHHHHHhcCCCCceeecCCcce------eeecCCC------C------CCCC-----------cchHHHHHHHHHHHHHH
Q 027911 110 MGAFLLSAGTKGKRYSLPNSRI------MIHQPLG------G------AQGG-----------QSDIDLQANEMLHHKAN 160 (217)
Q Consensus 110 ag~~Ia~ag~~~~r~~~p~s~i------~ih~~~~------~------~~G~-----------~~~~~~~~~~l~~~~~~ 160 (217)
+||+|+++||+ +++.|+|.+ +.+.... + ..|. ..+.+.....+.+.++.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999976 3221100 0 0111 12233334456667888
Q ss_pred HHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHhc
Q 027911 161 LNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAA 215 (217)
Q Consensus 161 ~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~~ 215 (217)
|.+.+++.+|++.+.++.++++.+| +++||+++||||+|+. .+++.+....-|
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~-~~~Ai~~a~~la 522 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGG-LDEAVAKAAKLA 522 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCC-HHHHHHHHHHHc
Confidence 9999999999999999999988777 9999999999999965 566665544433
No 24
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.91 E-value=4.5e-23 Score=171.18 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=134.8
Q ss_pred cEEEEccccC---cchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCcEEEEecccccHHH
Q 027911 39 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGA 112 (217)
Q Consensus 39 ~vI~i~G~I~---~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~---~~pV~t~v~g~aaSag~ 112 (217)
.+|+++|+|+ +.+...+.+.|+.++.+++++.|+|.+|||||++..+..+++.|+.. ++||++++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 4789999999 78899999999999988899999999999999999999999888765 57999999999999999
Q ss_pred HHHhcCCCCceeecCCcceeeecCC------------------CCCCCCc-------c-----hHHHHHHHHHHHHHHHH
Q 027911 113 FLLSAGTKGKRYSLPNSRIMIHQPL------------------GGAQGGQ-------S-----DIDLQANEMLHHKANLN 162 (217)
Q Consensus 113 ~Ia~ag~~~~r~~~p~s~i~ih~~~------------------~~~~G~~-------~-----~~~~~~~~l~~~~~~~~ 162 (217)
+|+++||+ |++.|++.++...+. ....|+. . +.+.....+....+.|.
T Consensus 83 ~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 83 YIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999987432111 0011211 1 12222233445677888
Q ss_pred HHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 163 GYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 163 ~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
+.+++.||++.+++.++.++..| ++++|+++||||+|.. .+++++.
T Consensus 161 ~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~-~~~~~~~ 206 (208)
T cd07023 161 DVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG-LDDAIAK 206 (208)
T ss_pred HHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC-HHHHHHh
Confidence 98999999999999998888776 8999999999999965 5555443
No 25
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.90 E-value=8.9e-23 Score=165.44 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh---hCCCcEEEEecccccHHHHHHhcCCCCceeecC
Q 027911 51 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP 127 (217)
Q Consensus 51 ~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~---~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p 127 (217)
+.+.+.+.|+.+..+++++.|+|.+|||||++.....+.+.++. +++||++++.|.|+|+|++++++||. +++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 35788889999998889999999999999999988888776654 46999999999999999999999999 99999
Q ss_pred CcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCccc
Q 027911 128 NSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKI 207 (217)
Q Consensus 128 ~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~ 207 (217)
++.|++|.+... .......+....+.|.+.+++.+|++.+.+.+++....+++++||++.||||+|.. .++.
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~-~~e~ 172 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS-FDDA 172 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC-HHHH
Confidence 999999877543 11122345667788889999999999999999988888899999999999999987 4555
Q ss_pred chHH
Q 027911 208 LQPV 211 (217)
Q Consensus 208 l~~~ 211 (217)
+..|
T Consensus 173 ~~~l 176 (177)
T cd07014 173 VAKL 176 (177)
T ss_pred HHHh
Confidence 5443
No 26
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.89 E-value=2.2e-22 Score=167.90 Aligned_cols=166 Identities=20% Similarity=0.223 Sum_probs=131.8
Q ss_pred EEEEccccCc-----------chHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCcEEEEecc
Q 027911 40 IIRCGGPVED-----------DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 106 (217)
Q Consensus 40 vI~i~G~I~~-----------~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~--~pV~t~v~g~ 106 (217)
+|.++|+|.+ .+...+.+.|+.++.+++++.|+|.+|||||++.....|+++|+.++ +||++++.|.
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 5778888876 34678999999999999999999999999999999999999999998 9999999999
Q ss_pred cccHHHHHHhcCCCCceeecCCcceeeecCCCC------------------CCCCcc-------hH-----HHHHHHHHH
Q 027911 107 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG------------------AQGGQS-------DI-----DLQANEMLH 156 (217)
Q Consensus 107 aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~------------------~~G~~~-------~~-----~~~~~~l~~ 156 (217)
|+|+|++++++||+ +++.|++.++....... ..|+.+ ++ +.....+..
T Consensus 84 a~s~gy~lA~~aD~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~ 161 (214)
T cd07022 84 AASAAYWIASAADR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDA 161 (214)
T ss_pred hhhHHHHHHhcCCE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999 99999998753322100 122221 11 112223445
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 157 HKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 157 ~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
.++.|.+.+++.|+++.+++.+.+ +. .|++++|+++||||+|.. .++++..
T Consensus 162 ~~~~f~~~V~~~R~~~~~~~~~~~-~~-~~~~~~Al~~gLvD~i~~-~~~~~~~ 212 (214)
T cd07022 162 LYAMFVAAVARNRGLSAAAVRATE-GG-VFRGQEAVAAGLADAVGT-LDDALAA 212 (214)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHhh-cC-eeeHHHHHHcCCCcccCC-HHHHHHH
Confidence 677899999999999999998888 44 469999999999999965 6665544
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.88 E-value=2.5e-21 Score=161.27 Aligned_cols=169 Identities=20% Similarity=0.175 Sum_probs=132.5
Q ss_pred cEEEEccccCcch-------HHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHH---hhCCCcEEEEecccc
Q 027911 39 RIIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIR---HIRPDVSTVCVGLAA 108 (217)
Q Consensus 39 ~vI~i~G~I~~~~-------~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~---~~~~pV~t~v~g~aa 108 (217)
.||.++|+|.+.. ...+.+.|+.++.+++++.|+|.+|||||++.+...+++.|+ ++++||++++.|.|+
T Consensus 3 ~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~ 82 (211)
T cd07019 3 GVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAA 82 (211)
T ss_pred EEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeeh
Confidence 4789999998764 467889999999999999999999999999999988888654 567899999999999
Q ss_pred cHHHHHHhcCCCCceeecCCcceeeecCCC------------C------CC-CC-----cchH-----HHHHHHHHHHHH
Q 027911 109 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQ-GG-----QSDI-----DLQANEMLHHKA 159 (217)
Q Consensus 109 Sag~~Ia~ag~~~~r~~~p~s~i~ih~~~~------------~------~~-G~-----~~~~-----~~~~~~l~~~~~ 159 (217)
|+|++|+++||+ +++.|++.++...... + .. |. ..++ +.....+...++
T Consensus 83 s~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~ 160 (211)
T cd07019 83 SGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYK 160 (211)
T ss_pred hHHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999875432210 0 01 21 1111 112233556677
Q ss_pred HHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHH
Q 027911 160 NLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 211 (217)
Q Consensus 160 ~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~ 211 (217)
.|.+.+++.++++++.+.+..++. +|+++||+++||||+|.+ .+++++++
T Consensus 161 ~f~~~Va~~R~~~~~~l~~~~~~~-~~~~~~A~~~GLvD~i~~-~~~~~~~~ 210 (211)
T cd07019 161 RFITLVADARHSTPEQIDKIAQGH-VWTGQDAKANGLVDSLGD-FDDAVAKA 210 (211)
T ss_pred HHHHHHHhhCCCCHHHHHHhcCCc-EEeHHHHHHcCCcccCCC-HHHHHHHh
Confidence 899999999999999998877664 669999999999999866 66665544
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.87 E-value=1.1e-21 Score=172.31 Aligned_cols=170 Identities=14% Similarity=0.206 Sum_probs=119.6
Q ss_pred cEEEEccccCcchHHHHHHHHHHh-hhcCCCCceEEEEcCCCCcHHHHHHHHHH---HHhhCCCcEEEEecccccHHHHH
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDT---IRHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l-~~~~~~~~I~l~InSpGG~v~~~~~I~~~---I~~~~~pV~t~v~g~aaSag~~I 114 (217)
.||.++|.|+......+.+.+..+ ....+.++|+|+||||||++.++..+... ++..++||++++.++|||+||||
T Consensus 93 ~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~i 172 (330)
T PRK11778 93 FVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMM 172 (330)
T ss_pred EEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHH
Confidence 367899999988765554444332 11222378999999999999876555554 45556899999999999999999
Q ss_pred HhcCCCCceeecCCcceeeecCCCC------------------CCCCcc------------hHHHHHHHHHHHHHHHHHH
Q 027911 115 LSAGTKGKRYSLPNSRIMIHQPLGG------------------AQGGQS------------DIDLQANEMLHHKANLNGY 164 (217)
Q Consensus 115 a~ag~~~~r~~~p~s~i~ih~~~~~------------------~~G~~~------------~~~~~~~~l~~~~~~~~~~ 164 (217)
+|+||+ +++.|.|.++....... ..|..+ +.+.....++..++.|.+.
T Consensus 173 AsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~ 250 (330)
T PRK11778 173 ACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDF 250 (330)
T ss_pred HHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999998765432210 022211 1122234455677889999
Q ss_pred HHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHh
Q 027911 165 LSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAA 214 (217)
Q Consensus 165 ~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~ 214 (217)
+++.|+ ...+.++.++..| ++++|+++||||+|.+ .++++.+++..
T Consensus 251 Va~~R~--~l~~~~va~G~v~-~g~~Al~~GLVD~Ig~-~dd~i~~~~~~ 296 (330)
T PRK11778 251 VQRYRP--QLDIDKVATGEHW-YGQQALELGLVDEIQT-SDDYLLELMKE 296 (330)
T ss_pred HHhcCC--cCCHHHHHhCCCc-CHHHHHHCCCCCcCCC-HHHHHHHHHhc
Confidence 998775 2234455666666 8999999999999976 77777666544
No 29
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.2e-21 Score=173.67 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=141.3
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe---cccccHHHHHH
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL 115 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~---g~aaSag~~Ia 115 (217)
-++.++|+|++.+++.+.+.|..+++ ++...++|.+|||||-++++.+|.++|.+++.||+.|+. ++|+|||+||+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 46789999999999999999987665 457899999999999999999999999999999888885 47999999999
Q ss_pred hcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcC
Q 027911 116 SAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYG 195 (217)
Q Consensus 116 ~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~G 195 (217)
+++|. ++|.|++.++..+|.... |+..+.+. .+..+...+.. +++.+|++.+..+++.+++..++++||.+.|
T Consensus 108 m~~hi--aaMAPgT~iGaa~Pi~~~-g~~~~~~~---~~n~~~ay~~~-~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~ 180 (436)
T COG1030 108 MATHI--AAMAPGTNIGAATPIAGG-GTSAKEAN---TTNAAVAYIRS-LAEERGRNPTWAERFVTENLSLTAEEALRQG 180 (436)
T ss_pred HhcCh--hhhCCCCcccccceecCC-CCCccchh---hHHHHHHHHHH-HHHHcCCChHHHHHHhhhccCCChhHHHhcC
Confidence 99999 999999999999996554 33322221 23444545555 4899999999999999999999999999999
Q ss_pred CceeecCCCcccchHH
Q 027911 196 LIDGVVMNPHKILQPV 211 (217)
Q Consensus 196 liD~I~~~~~~~l~~~ 211 (217)
+||-|..+..|.|+++
T Consensus 181 vid~iA~~~~ell~~~ 196 (436)
T COG1030 181 VIDLIARDLNELLKKL 196 (436)
T ss_pred ccccccCCHHHHHHHc
Confidence 9999999999988765
No 30
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.86 E-value=5.2e-21 Score=160.47 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=128.6
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh---CCCcEEEEecccccHHHHHHhcCCCC
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKG 121 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~---~~pV~t~v~g~aaSag~~Ia~ag~~~ 121 (217)
+..+......+.+.|+++..+++++.|+|.+|||||.+.+..+|++.|+.. ++||++++.+ |+|+||+|+++||+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 334455678899999999999999999999999999999999999998754 5899999997 99999999999999
Q ss_pred ceeecCCcceeeecCCCC------------------CCCCcc---------hHHHH-----HHHHHHHHHHHHHHHHHhc
Q 027911 122 KRYSLPNSRIMIHQPLGG------------------AQGGQS---------DIDLQ-----ANEMLHHKANLNGYLSYHT 169 (217)
Q Consensus 122 ~r~~~p~s~i~ih~~~~~------------------~~G~~~---------~~~~~-----~~~l~~~~~~~~~~~a~~t 169 (217)
+++.|++.+++..+... ..|..+ ++... ...+...++.|.+.+++.|
T Consensus 102 -I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 102 -IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred -EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887644311 012111 11111 2223446778889999999
Q ss_pred CCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHH
Q 027911 170 GQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 211 (217)
Q Consensus 170 g~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~ 211 (217)
+++.+.++++.++..| ++++|++.||||+|. +.+++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~-~~~~A~~~GLvD~i~-~~~e~~~~l 220 (222)
T cd07018 181 GLSPDALEALIDLGGD-SAEEALEAGLVDGLA-YRDELEARL 220 (222)
T ss_pred CCCHHHHHHHHHcCCc-HHHHHHHCCCCCcCC-cHHHHHHHH
Confidence 9999999998886655 999999999999998 477766654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.74 E-value=7.8e-17 Score=136.89 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=108.9
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCce
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKR 123 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r 123 (217)
...|+.+.++.+.+.++. .+..++|.|.||||||.+.++..|.++|+++..|++++|...|.|||++|+++||+ +
T Consensus 69 ~~~I~i~dse~v~raI~~---~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--I 143 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIRE---APKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--I 143 (285)
T ss_pred ceeEcHhhHHHHHHHHHh---cCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--E
Confidence 445888888888888764 34467899999999999999999999999999999999999999999999999999 9
Q ss_pred eecCCcceeeecCCCCCCC--------------CcchH----HH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----
Q 027911 124 YSLPNSRIMIHQPLGGAQG--------------GQSDI----DL-QANEMLHHKANLNGYLSYHTGQTLEKINED----- 179 (217)
Q Consensus 124 ~~~p~s~i~ih~~~~~~~G--------------~~~~~----~~-~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~----- 179 (217)
+|.|+|.++.-.|..+..- ..+|. .+ ..|.+.+.++....++.+ +++.++.+++
T Consensus 144 vM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L~ 221 (285)
T PF01972_consen 144 VMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKLS 221 (285)
T ss_pred EECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhc
Confidence 9999999998877654211 11110 00 112233344444445544 4555555443
Q ss_pred ---hCCCcccCHHHHHHcCCc
Q 027911 180 ---TDRDFFMSAEEAKDYGLI 197 (217)
Q Consensus 180 ---~~~~~~lta~EA~~~Gli 197 (217)
.+.+..+|.+||+++||=
T Consensus 222 ~g~~tHdypi~~eea~~lGL~ 242 (285)
T PF01972_consen 222 SGKWTHDYPITVEEAKELGLP 242 (285)
T ss_pred CCCCCCCCCCCHHHHHHcCCC
Confidence 345677999999999984
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.62 E-value=6e-15 Score=139.33 Aligned_cols=160 Identities=11% Similarity=-0.002 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHhhhcCCCCceEEEEcC-CCCcHHHHHHHHHHHHhh---CCCcEEEEecccccHHHHHHhcCCCCceeec
Q 027911 51 MANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 126 (217)
Q Consensus 51 ~~~~l~~~L~~l~~~~~~~~I~l~InS-pGG~v~~~~~I~~~I~~~---~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~ 126 (217)
....++..|+.+..++++++|+|.+|+ |||.+....+|+++|+.. ++||+++.... +|++|||+++||+ +++.
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~~~ 153 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--IILN 153 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EEEC
Confidence 457888999999999999999999996 678888899999998865 48999987754 7999999999999 9999
Q ss_pred CCcceeeecCCCC------------------CCCC------c---chHHHH-----HHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 127 PNSRIMIHQPLGG------------------AQGG------Q---SDIDLQ-----ANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 127 p~s~i~ih~~~~~------------------~~G~------~---~~~~~~-----~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
|.+.++++..... ..|. + .++... ...+....+.|.+.+++.|+++.+
T Consensus 154 p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~ 233 (584)
T TIGR00705 154 PMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQ 233 (584)
T ss_pred CCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Confidence 9998866543211 0121 1 122222 222445677888889999999999
Q ss_pred HHHhhhCCCcc-------cCHHHHHHcCCceeecCCCcccchHHHHh
Q 027911 175 KINEDTDRDFF-------MSAEEAKDYGLIDGVVMNPHKILQPVAAA 214 (217)
Q Consensus 175 ~i~~~~~~~~~-------lta~EA~~~GliD~I~~~~~~~l~~~~~~ 214 (217)
.+.+..++-.| +++++|++.||||++.. .+++.+.+...
T Consensus 234 ~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~-~de~~~~l~~~ 279 (584)
T TIGR00705 234 QLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCS-YAEAGKALKFL 279 (584)
T ss_pred HHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCC-HHHHHHHHHHH
Confidence 99888776554 38999999999999975 66665555443
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.60 E-value=4.7e-15 Score=117.77 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=86.5
Q ss_pred HHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCC------------C------CCCCc-------ch
Q 027911 92 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLG------------G------AQGGQ-------SD 146 (217)
Q Consensus 92 I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~------------~------~~G~~-------~~ 146 (217)
.++.++||++++.+.|+|++|+|+++||+ +++.|.+.++...... + ..|.. .+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 46788999999999999999999999999 9999999876543221 0 02211 11
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHHhcC
Q 027911 147 ID-----LQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAAG 216 (217)
Q Consensus 147 ~~-----~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~~~ 216 (217)
+. ...+.+....+.|.+.+++.||++.+++.++.++. .|++++|+++||||+|. +.+++++.+...++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~-~~~~~~A~~~GLiD~i~-~~~~~~~~l~~~~~ 152 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGG-VFTAQQALELGLIDEIG-TFDEAIARLAKLAG 152 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCH-EEEHHHHHHTTSSSEET-SHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhc-cccHHHHHHcCchhhcC-CHHHHHHHHHHHcC
Confidence 11 12233445677888999999999999999988885 55999999999999996 58888888877664
No 34
>PRK10949 protease 4; Provisional
Probab=99.55 E-value=5.8e-14 Score=133.08 Aligned_cols=160 Identities=18% Similarity=0.090 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEcCCCCcHHH-HHHHHHHHHhh---CCCcEEEEecccccHHHHHHhcCCCCceeecCC
Q 027911 53 NIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-GMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPN 128 (217)
Q Consensus 53 ~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~-~~~I~~~I~~~---~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~ 128 (217)
..+++.|++++.++++++|+|.+|||||...+ ..+|+++|+.. ++||+++ ...++|++|||+++||+ +++.|.
T Consensus 98 ~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~l~P~ 174 (618)
T PRK10949 98 FDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IYLSPQ 174 (618)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EEECCC
Confidence 46888999999999999999999999887654 47899988765 4899996 66668999999999999 999999
Q ss_pred cceeeecCCCC------------------CCCCc---------chHHHHHHH-----HHHHHHHHHHHHHHhcCCCHHHH
Q 027911 129 SRIMIHQPLGG------------------AQGGQ---------SDIDLQANE-----MLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 129 s~i~ih~~~~~------------------~~G~~---------~~~~~~~~~-----l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
+.++++..... ..|.. .++....++ +....+.|.+.+++.|+++.+.+
T Consensus 175 G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v 254 (618)
T PRK10949 175 GVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQL 254 (618)
T ss_pred ceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 98876644321 01211 122222222 33456778888899999999988
Q ss_pred HhhhCC-------CcccCHHHHHHcCCceeecCCCcccchHHHHhcC
Q 027911 177 NEDTDR-------DFFMSAEEAKDYGLIDGVVMNPHKILQPVAAAAG 216 (217)
Q Consensus 177 ~~~~~~-------~~~lta~EA~~~GliD~I~~~~~~~l~~~~~~~~ 216 (217)
....++ .--+++++|++.||||++.. .+|+.+.+...+|
T Consensus 255 ~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~-~de~~~~l~~~~g 300 (618)
T PRK10949 255 FPGAQGILEGLTKVGGDTAKYALDNKLVDALAS-SAEIEKALTKAFG 300 (618)
T ss_pred HHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCC-HHHHHHHHHHHhC
Confidence 543221 11358999999999999965 6676666655443
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.20 E-value=3.8e-10 Score=91.90 Aligned_cols=145 Identities=19% Similarity=0.126 Sum_probs=99.9
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHH-----------------HHHHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~-----------------~~~~I~~~I~ 93 (217)
+|.++.+ ++..+.+.+.+.++.++.++..+.|+|.=+ |+|+++. ....+...|.
T Consensus 11 ~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (195)
T cd06558 11 TITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALL 90 (195)
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHH
Confidence 3555555 466678888889988888777777777655 5666643 2355566777
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++|+++.+.|.|.++|..++++||. |++.+++.|.+..+..+..- +... ...+ .++.| .
T Consensus 91 ~~~~p~Ia~v~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p---~~g~----~~~l--------~~~~g--~ 151 (195)
T cd06558 91 RLPKPVIAAVNGAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVP---GGGG----TQRL--------PRLVG--P 151 (195)
T ss_pred cCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCC---CCcH----HHHH--------HHHhC--H
Confidence 788999999999999999999999999 99999999887665433210 0000 0011 11112 2
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
....+++-....++++||++.||+|++++.
T Consensus 152 ~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 152 ARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 222333333556799999999999999986
No 36
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=99.07 E-value=2.8e-09 Score=87.35 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=106.5
Q ss_pred EEEccccCcchHHHHHHHHHHhhhcCCCCceE-EEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCC
Q 027911 41 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 119 (217)
Q Consensus 41 I~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~-l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~ 119 (217)
+.+++++-+-.+......+. ++.+....+ +.+|||||++..+.++...|++.+..+.+--..+|+|++.+.+++|.
T Consensus 79 VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv 155 (245)
T COG3904 79 VVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV 155 (245)
T ss_pred EEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce
Confidence 45677766654444334442 334444455 78999999999999999999999988888888999999999999999
Q ss_pred CCceeecCCcceeeecCCCCCCCC-cchHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHHHhhhC----CCcccCHHHHHH
Q 027911 120 KGKRYSLPNSRIMIHQPLGGAQGG-QSDIDLQANEML-HHKANLNGYLSYHTGQTLEKINEDTD----RDFFMSAEEAKD 193 (217)
Q Consensus 120 ~~~r~~~p~s~i~ih~~~~~~~G~-~~~~~~~~~~l~-~~~~~~~~~~a~~tg~~~~~i~~~~~----~~~~lta~EA~~ 193 (217)
. |++.+.+.+++|++++...-. ....+ ++... +....+..+ -..+|.....+..+.. +-++++.+|..+
T Consensus 156 r--Rvve~~ayiGVHq~~~~g~~~r~~~~~--a~Sanq~~tar~a~y-lrEMgigpgLlq~ml~tpp~dir~l~~kem~~ 230 (245)
T COG3904 156 R--RVVEDFAYIGVHQITTTGRRERIVNGK--AKSANQKVTARLAAY-LREMGIGPGLLQMMLATPPSDIRQLGLKEMTA 230 (245)
T ss_pred e--eeecccceeeeeeccccCCccccCcHh--hhhhhhhhHHHHHHH-HHHcCCCHHHHHHHhcCChHhhhhhhHHHHhh
Confidence 8 999999999999997653321 11111 11111 223334333 4557888877755432 347889999999
Q ss_pred cCCcee
Q 027911 194 YGLIDG 199 (217)
Q Consensus 194 ~GliD~ 199 (217)
+.|..+
T Consensus 231 ~~L~t~ 236 (245)
T COG3904 231 MKLVTS 236 (245)
T ss_pred hccccc
Confidence 988765
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.03 E-value=6.9e-09 Score=87.08 Aligned_cols=151 Identities=25% Similarity=0.245 Sum_probs=99.3
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH---------------HHHHHHHHhhC
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG---------------MAIFDTIRHIR 96 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~---------------~~I~~~I~~~~ 96 (217)
+|+++.+ ++.++...+.+.+..++.+++.+.|+|.=+ |.|+++... ..+++.|+.++
T Consensus 20 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (222)
T PRK05869 20 TLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIP 99 (222)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCC
Confidence 4667766 666778888888888887777776665311 334554321 23556778889
Q ss_pred CCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 027911 97 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 97 ~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
+||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. .....-. .. + .++.| ....
T Consensus 100 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~~----l----~~~ig--~~~a 160 (222)
T PRK05869 100 KPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGL---APSGDGM----AR----L----TRAAG--PSRA 160 (222)
T ss_pred CCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCC---CCCccHH----HH----H----HHHhC--HHHH
Confidence 999999999999999999999999 999999988764443221 1111000 00 0 11112 2222
Q ss_pred HhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 177 NEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 177 ~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
.+++-...+++++||+++||+|++++ .++.+++
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~~~ 193 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVA-PDDVYDA 193 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeC-chHHHHH
Confidence 34443445789999999999999986 3444443
No 38
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=6.4e-09 Score=88.98 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=99.6
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH-----------------HHHHHHHHh
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-----------------MAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~-----------------~~I~~~I~~ 94 (217)
+|+++.| ++.++.+.+.+.+..++.++.++.|+|.=+ |.|+++... ..+++.|..
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRE 95 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 4677776 677778888888888887776766665411 344444321 224556778
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..|... .+ .+..| ..
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~--------------~l----~~~~g--~~ 153 (257)
T PRK06495 96 CAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGK--------------HA----MRLFG--HS 153 (257)
T ss_pred CCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHH--------------HH----HHHhC--HH
Confidence 88999999999999999999999999 99999999877554433322110 01 11112 23
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
...+++-....++++||+++||+|++++. ++.++
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~ 187 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMP 187 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHH
Confidence 33444434456799999999999999873 44433
No 39
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.5e-08 Score=87.65 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH-------------------HHHHHHH
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTI 92 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~-------------------~~I~~~I 92 (217)
|+++-+ ++.++...+.+.+..++.++.++.|+|.= =|.|+++... ..+++.|
T Consensus 30 itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (277)
T PRK08258 30 ITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAM 109 (277)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHH
Confidence 566654 67777888888888877766666665531 1445555431 2356677
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.|.|.|..+|.-++++||. |++.+++.|++.....+... .+.... .. + .+..|.
T Consensus 110 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~----~~----l----~~~vG~- 172 (277)
T PRK08258 110 RACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAG--ADMGAC----AL----L----PRIIGQ- 172 (277)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCC--CCchHH----HH----H----HHHhCH-
Confidence 7889999999999999999999999999 99999999987655433221 111100 00 0 011121
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
....+++-....++++||+++||||++++.
T Consensus 173 -~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 173 -GRASELLYTGRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence 122333333356699999999999999874
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1.1e-08 Score=87.40 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=95.7
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHH--------------HHHHHHHHHhhCC
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------GMAIFDTIRHIRP 97 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~--------------~~~I~~~I~~~~~ 97 (217)
|+++-+ ++.++.+.+.+.+..++.+++.+.|+|. .=|.|+++.. ...+++.|..+++
T Consensus 18 i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 97 (259)
T PRK06688 18 ITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPK 97 (259)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCC
Confidence 556655 7777888888888888877767776664 2244555432 2345667778899
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
|+++.+.|.|..+|.-++++||. |++.+++.|.+.....+.. ...... ..+.+ ..| .....
T Consensus 98 p~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~---p~~g~~-~~l~~-----------~~G--~~~a~ 158 (259)
T PRK06688 98 PVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLC---PDAGGS-ALLPR-----------LIG--RARAA 158 (259)
T ss_pred CEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCC---CCcchh-hHHHH-----------Hhh--HHHHH
Confidence 99999999999999999999999 9999999988755433321 111000 00011 011 11112
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||||+|++.
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPA 184 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCH
Confidence 22222345799999999999999873
No 41
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.96 E-value=2.2e-08 Score=85.33 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=100.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------HHHHHHHHhhCCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPD 98 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------~~I~~~I~~~~~p 98 (217)
+|+++.+ ++.+..+.+.+.+..++.++.++.|+|.=+ |.|+++... ..++..+..+++|
T Consensus 17 ~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 96 (249)
T PRK07110 17 QVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIP 96 (249)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCC
Confidence 3566654 667777888888888887776676666411 445665431 2566778888999
Q ss_pred cEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 027911 99 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINE 178 (217)
Q Consensus 99 V~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 178 (217)
|++.+.|.|..+|..++++||. |++.+++.|.+.....+ -.....-. .. + .++.| .....+
T Consensus 97 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---l~p~~g~~----~~----l----~~~~g--~~~a~~ 157 (249)
T PRK07110 97 VIAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYG---FTPGMGAT----AI----L----PEKLG--LALGQE 157 (249)
T ss_pred EEEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccC---CCCCchHH----HH----H----HHHhC--HHHHHH
Confidence 9999999999999999999999 99999998865433222 11111100 00 1 11112 233344
Q ss_pred hhCCCcccCHHHHHHcCCceeecCCCcccchHHH
Q 027911 179 DTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVA 212 (217)
Q Consensus 179 ~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~ 212 (217)
++-...-++++||+++||+|+|++ .++.+++..
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~-~~~l~~~a~ 190 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLP-RAEVLEKAL 190 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeC-hHHHHHHHH
Confidence 444445669999999999999987 344444443
No 42
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.96 E-value=1.7e-08 Score=86.54 Aligned_cols=150 Identities=21% Similarity=0.149 Sum_probs=96.7
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEE-----EcCCCCcHHH--------------HHHHHHHHHhhC
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY-----LNSPGGSVTA--------------GMAIFDTIRHIR 96 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~-----InSpGG~v~~--------------~~~I~~~I~~~~ 96 (217)
+|+++.+ ++..+.+.+.+.+..++.++.++.|+|. .=|.|+++.. ...++..|..++
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (261)
T PRK03580 15 EITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLD 94 (261)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCC
Confidence 4667766 5666778888888888877666666663 1245566542 123455677889
Q ss_pred CCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 027911 97 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 97 ~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
+||++.+.|.|..+|.-++++||. |++.+++.|.+-....+ -..+.... .. + .++.| ....
T Consensus 95 kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---~~p~~g~~----~~----l----~~~vg--~~~a 155 (261)
T PRK03580 95 KPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLG---IVPDSGGV----LR----L----PKRLP--PAIA 155 (261)
T ss_pred CCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccC---cCCCccHH----HH----H----HHHhC--HHHH
Confidence 999999999999999999999999 99999998875333222 11111100 00 0 01111 2222
Q ss_pred HhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 177 NEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 177 ~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.+++-....++++||+++||||+|++. ++.++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~ 187 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMD 187 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCH-hHHHH
Confidence 333323346799999999999999874 44433
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.94 E-value=1.8e-08 Score=86.30 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=97.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHH---------------HHHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA---------------GMAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~---------------~~~I~~~I~~ 94 (217)
+|+++-| ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...+++.|..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRH 98 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHh
Confidence 4667655 67778888888998888777677666632 144555432 1234566777
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. +..... . . +.+..| ..
T Consensus 99 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~~~------~---~----l~~~iG--~~ 158 (256)
T PRK06143 99 FPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVIHA------A---L----LPRLIG--WA 158 (256)
T ss_pred CCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCccHH------H---H----HHHhcC--HH
Confidence 88999999999999999999999999 999999988764333322 111110 0 1 111122 22
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
...+++-....++++||+++||||+|++.
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVPL 187 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence 33344434456799999999999999873
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.93 E-value=2.2e-08 Score=85.92 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc------CCCCcHHHH--------------HHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG--------------MAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In------SpGG~v~~~--------------~~I~~~I~~ 94 (217)
+|+++-| ++.+..+.+.+.+..++.++ ++.|+|.=+ |.|+++... ..+...|+.
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 94 (261)
T PRK11423 16 TITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQK 94 (261)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHh
Confidence 3566655 67777888888888777654 665555421 345555321 234566778
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. .....- +.. + .+..| ..
T Consensus 95 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~~~~g~----~~~----l----~~~vg--~~ 155 (261)
T PRK11423 95 FPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGV---PYNLSG----ILN----F----TNDAG--FH 155 (261)
T ss_pred CCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCC---CCCccH----HHH----H----HHHhH--HH
Confidence 88999999999999999999999999 999999988754433221 111100 001 1 11111 12
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCccc
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKI 207 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~ 207 (217)
...+++-....++++||+++||||+|++. ++.
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l 187 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEV-EEL 187 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHH
Confidence 22333333456799999999999999873 443
No 45
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=3.9e-08 Score=84.37 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=97.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH-------------HHHHHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~-------------~~~I~~~I~~~~~ 97 (217)
+|+++-+ ++.++.+.+.+.|..++.++.++.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 16 ~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~k 95 (258)
T PRK06190 16 TLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRK 95 (258)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCC
Confidence 3566654 77778888888888888777676666642 245666542 1345667888899
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|.+-....+ -..+..-. . .+ .+..| .....
T Consensus 96 PvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~-----~---~l----~r~vG--~~~a~ 156 (258)
T PRK06190 96 PVIGAINGAAVTGGLELALACDI--LIASERARFADTHARVG---ILPGWGLS-----V---RL----PQKVG--IGRAR 156 (258)
T ss_pred CEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEECcccccC---cCCCccHH-----H---HH----HHHhC--HHHHH
Confidence 99999999999999999999999 99999998875333222 11111100 0 01 11112 22333
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||||++++.
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~ 182 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPH 182 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCH
Confidence 44333446699999999999999873
No 46
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.93 E-value=2.3e-08 Score=85.49 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=95.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH-------------HHHHHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~-------------~~~I~~~I~~~~~ 97 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 14 ~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 93 (255)
T PRK09674 14 LLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNK 93 (255)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCC
Confidence 3556544 56677788888888888777676666631 144555532 1235666788899
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+..-. . . +.+..| .....
T Consensus 94 PvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~----~----l~~~ig--~~~a~ 154 (255)
T PRK09674 94 PLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEITLGI---MPGAGGT----Q----R----LIRSVG--KSLAS 154 (255)
T ss_pred CEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchhhcCC---CCCccHH----H----H----HHHHhC--HHHHH
Confidence 99999999999999999999999 999999988764443322 1111100 0 0 111112 22223
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||||+|++.
T Consensus 155 ~l~l~g~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK09674 155 QMVLTGESITAQQAQQAGLVSEVFPP 180 (255)
T ss_pred HHHHcCCccCHHHHHHcCCCcEecCh
Confidence 44333445799999999999999874
No 47
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=2.2e-08 Score=86.35 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=96.1
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH--------------------------
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------- 85 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~-------------------------- 85 (217)
|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=+ |-|+++..-
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRL 98 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 566665 777788888888888777666666665321 334554321
Q ss_pred HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 027911 86 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 165 (217)
Q Consensus 86 ~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~ 165 (217)
..+++.|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ....... .. +
T Consensus 99 ~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~~----l---- 161 (272)
T PRK06142 99 QAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGM---VADVGSL----QR----L---- 161 (272)
T ss_pred HHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCC---CCCchHH----HH----H----
Confidence 22345577789999999999999999999999999 999999988765443321 1111100 00 1
Q ss_pred HHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccc
Q 027911 166 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKIL 208 (217)
Q Consensus 166 a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l 208 (217)
.+..|. ....+++-....++++||+++||||+|+++.++.+
T Consensus 162 ~~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~ 202 (272)
T PRK06142 162 PRIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDDADALL 202 (272)
T ss_pred HHHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHH
Confidence 111121 22233333334569999999999999998644443
No 48
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=2e-08 Score=86.11 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=96.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHH----------------------HHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------------MAI 88 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~----------------------~~I 88 (217)
+|+++-+ ++..+.+.+.+.+..++.++.++.|+|. .=|.|+++..- ..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRV 94 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHH
Confidence 4666655 6777788888888888877766666652 11445554321 112
Q ss_pred HHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 027911 89 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH 168 (217)
Q Consensus 89 ~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~ 168 (217)
+..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+..-. . .+ .+.
T Consensus 95 ~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~----~l----~~~ 157 (262)
T PRK07509 95 SLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGL---VPDMAGT----V----SL----RGL 157 (262)
T ss_pred HHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCC---CCCchHH----H----HH----HHH
Confidence 33456788999999999999999999999999 999999988875443332 1111100 0 00 111
Q ss_pred cCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCccc
Q 027911 169 TGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKI 207 (217)
Q Consensus 169 tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~ 207 (217)
.| .....+++-....++++||+++||||++++...+.
T Consensus 158 ~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~ 194 (262)
T PRK07509 158 VR--KDVARELTYTARVFSAEEALELGLVTHVSDDPLAA 194 (262)
T ss_pred hC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhchHHHH
Confidence 12 22233443334567999999999999998654333
No 49
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.93 E-value=2.4e-08 Score=86.28 Aligned_cols=145 Identities=18% Similarity=0.119 Sum_probs=94.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHH-------------------------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG------------------------- 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~------------------------- 85 (217)
+|+++-| ++.++.+.+.+.|..++.++.++.|+|. .=|.|+++...
T Consensus 20 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (275)
T PLN02664 20 HLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKF 99 (275)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHH
Confidence 3566655 6777888888888888877666655543 11334554321
Q ss_pred -HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 027911 86 -MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGY 164 (217)
Q Consensus 86 -~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~ 164 (217)
..+++.|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+.... ..+
T Consensus 100 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~~l------- 163 (275)
T PLN02664 100 LQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAI---TADLGTL----QRL------- 163 (275)
T ss_pred HHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCC---CCCccHH----HHH-------
Confidence 12445677889999999999999999999999999 999999998764333221 1111100 000
Q ss_pred HHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 165 LSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 165 ~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.+..|. ....+++-....++++||+++||||+|+++
T Consensus 164 -~~~vG~--~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 164 -PSIVGY--GNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred -HHHhCH--HHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 111121 122333323346699999999999999875
No 50
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=3.6e-08 Score=84.25 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=97.5
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH----------------HHHHHHHHHhh
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRHI 95 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~----------------~~~I~~~I~~~ 95 (217)
+|+++.+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...++..|..+
T Consensus 14 ~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (257)
T PRK07658 14 VITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKF 93 (257)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhC
Confidence 3556655 66667788888888877777666666532 144566532 12345567788
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEK 175 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 175 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..-. . .+ .+..|. ..
T Consensus 94 ~kpvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~----~l----~~~vG~--~~ 154 (257)
T PRK07658 94 SKPVIAAIHGAALGGGLELAMSCHI--RFATESAKLGLPELNLGL---IPGFAGT----Q----RL----PRYVGK--AK 154 (257)
T ss_pred CCCEEEEEcCeeeeHHHHHHHhCCE--EEecCCCcccCcccccCC---CCCCcHH----H----HH----HHHhCH--HH
Confidence 8999999999999999999999999 999999988764433221 1111100 0 01 111121 22
Q ss_pred HHhhhCCCcccCHHHHHHcCCceeecCCCcccchHH
Q 027911 176 INEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 211 (217)
Q Consensus 176 i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~ 211 (217)
..+++-....++++||+++||+|+|++ .++.+++.
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a 189 (257)
T PRK07658 155 ALEMMLTSEPITGAEALKWGLVNGVFP-EETLLDDA 189 (257)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCeecC-hhHHHHHH
Confidence 233333345679999999999999986 44444443
No 51
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=4.2e-08 Score=84.02 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=98.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH------------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~------------------~~I~~~I 92 (217)
+|+++.+ ++..+.+.+.+.|..++.+++++.|+|.= =|.|+++... ..++..|
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07511 15 VLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAI 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 3667766 77777888888888887777666666531 1344554321 2244566
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
..+++||++.+.|.|..+|..++++||. |++.+++.|.+.....+.. .+.... .. + .++ +.
T Consensus 95 ~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~----~~----l----~~~--vg 155 (260)
T PRK07511 95 RAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLT---PDGGGS----WF----L----ARA--LP 155 (260)
T ss_pred HcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcC---CCchHH----HH----H----HHH--hC
Confidence 6788999999999999999999999999 9999999988654433321 111100 00 0 111 12
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
.....+++-....++++||+++||+|+|++. ++.+++
T Consensus 156 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~ 192 (260)
T PRK07511 156 RQLATELLLEGKPISAERLHALGVVNRLAEP-GQALAE 192 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHH
Confidence 2223344433456799999999999999874 333433
No 52
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.90 E-value=2.5e-08 Score=85.30 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=97.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHHH--------------HHHHHHHHhh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG--------------MAIFDTIRHI 95 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~~--------------~~I~~~I~~~ 95 (217)
+|+++-+ ++.++.+.+.+.+..++.+++++.|+|.= =|.|+++..- ..+++.|+.+
T Consensus 14 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (256)
T TIGR03210 14 WIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDV 93 (256)
T ss_pred EEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhC
Confidence 3556544 66677788888888877777666666632 2446665431 2345677788
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEK 175 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 175 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+-.+..+.. +..... . . +.+..|. ..
T Consensus 94 ~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~--~~~~~~--~-------~----l~~~vG~--~~ 154 (256)
T TIGR03210 94 PKPVIARVQGYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVGSV--DPGYGT--A-------L----LARVVGE--KK 154 (256)
T ss_pred CCCEEEEECCEEehhhHHHHHhCCE--EEEeCCCEEeccccccccc--CCccHH--H-------H----HHHHhCH--HH
Confidence 9999999999999999999999999 9999999987644332211 010000 0 0 1111121 22
Q ss_pred HHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 176 INEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 176 i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
..+++-....++++||+++||||+|++. ++.+++
T Consensus 155 A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~ 188 (256)
T TIGR03210 155 AREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAE 188 (256)
T ss_pred HHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHH
Confidence 2233322346799999999999999873 444333
No 53
>PLN02600 enoyl-CoA hydratase
Probab=98.90 E-value=4.8e-08 Score=83.35 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=96.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHH---------------HHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG---------------MAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~---------------~~I~~~I~~ 94 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=. |.|+++..- ..++..|..
T Consensus 7 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (251)
T PLN02600 7 ELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEA 86 (251)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHh
Confidence 3555554 677788888888888887776666666421 345555421 123455667
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.|.|.|..+|.-++++||. |++.+++.|++-.... |-..+..-. .. + ....| ..
T Consensus 87 ~~kPvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~---Gl~p~~g~~----~~----l----~~~~G--~~ 147 (251)
T PLN02600 87 LSIPTIAVVEGAALGGGLELALSCDL--RICGEEAVFGLPETGL---AIIPGAGGT----QR----L----PRLVG--RS 147 (251)
T ss_pred CCCCEEEEecCeecchhHHHHHhCCE--EEeeCCCEEeCccccc---CcCCCchHH----HH----H----HHHhC--HH
Confidence 88999999999999999999999999 9999999887633322 211111100 00 1 11111 12
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
...+++-....++++||+++||||++++. ++.+.+
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~ 182 (251)
T PLN02600 148 RAKELIFTGRRIGAREAASMGLVNYCVPA-GEAYEK 182 (251)
T ss_pred HHHHHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHH
Confidence 22233323346799999999999999874 444433
No 54
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.90 E-value=4.7e-08 Score=83.48 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=97.3
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------HHHHHHHHhhCCCc
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDV 99 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------~~I~~~I~~~~~pV 99 (217)
+|+++.+ ++..+.+.+.+.+..++.++..+.|+|.=+ |.|+++.+. ..++..|+.+++||
T Consensus 13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 92 (251)
T TIGR03189 13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPI 92 (251)
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 4677777 777788888888888887776776665311 445555321 23455677888999
Q ss_pred EEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 027911 100 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 179 (217)
Q Consensus 100 ~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 179 (217)
++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. ..... . . +.+..| .....++
T Consensus 93 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~---p~~~~--~-------~----l~~~vg--~~~a~~l 152 (251)
T TIGR03189 93 LVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVF---APAAS--C-------L----LPERMG--RVAAEDL 152 (251)
T ss_pred EEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCC---CCchH--H-------H----HHHHhC--HHHHHHH
Confidence 999999999999999999999 9999999887644333221 11110 0 0 111112 2223344
Q ss_pred hCCCcccCHHHHHHcCCceeecCCCc
Q 027911 180 TDRDFFMSAEEAKDYGLIDGVVMNPH 205 (217)
Q Consensus 180 ~~~~~~lta~EA~~~GliD~I~~~~~ 205 (217)
+-....++++||+++||+|+|+++..
T Consensus 153 ~ltg~~~~a~eA~~~Glv~~v~~~~~ 178 (251)
T TIGR03189 153 LYSGRSIDGAEGARIGLANAVAEDPE 178 (251)
T ss_pred HHcCCCCCHHHHHHCCCcceecCcHH
Confidence 33334579999999999999987543
No 55
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.90 E-value=5.4e-08 Score=83.47 Aligned_cols=145 Identities=15% Similarity=0.112 Sum_probs=94.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH-------------HHHHHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~-------------~~~I~~~I~~~~~ 97 (217)
+|+++-+ ++.++.+.+.+.+..++.+++++.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 20 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 99 (261)
T PRK08138 20 LLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPK 99 (261)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCC
Confidence 3566554 67777888888888888777666666631 144555432 1234566778889
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..-. . .+ .+..| .....
T Consensus 100 PvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~----~l----~~~vG--~~~a~ 160 (261)
T PRK08138 100 PVIAAVNGYALGGGCELAMHADI--IVAGESASFGQPEIKVGL---MPGAGGT----Q----RL----VRAVG--KFKAM 160 (261)
T ss_pred CEEEEEccEEEcHHHHHHHhCCE--EEecCCCEeeCccccccc---CCCCcHH----H----HH----HHHhC--HHHHH
Confidence 99999999999999999999999 999999988764333221 1111100 0 01 11112 12223
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||||++++.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (261)
T PRK08138 161 RMALTGCMVPAPEALAIGLVSEVVED 186 (261)
T ss_pred HHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 33333345699999999999999874
No 56
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=4.2e-08 Score=83.97 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=93.4
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH---------------HHHHHHHHHhh
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHI 95 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~---------------~~~I~~~I~~~ 95 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|.=. |.|+++.. ...++..|..+
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (258)
T PRK09076 15 ILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAF 94 (258)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhC
Confidence 3566665 667777888888888877766666665321 33455432 12245567778
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEK 175 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 175 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+.... . .+ .+..|. ..
T Consensus 95 ~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~-----~---~l----~~~iG~--~~ 155 (258)
T PRK09076 95 RGVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGL---LPCAGGT-----Q---NL----PWLVGE--GW 155 (258)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCC---CCCccHH-----H---HH----HHHhCH--HH
Confidence 9999999999999999999999999 999999988764433221 1111100 0 01 111121 11
Q ss_pred HHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 176 INEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 176 i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
..+++-....++++||+++||+|+|++.
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 156 AKRMILCGERVDAATALRIGLVEEVVEK 183 (258)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCceecCc
Confidence 2223323345699999999999999874
No 57
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.89 E-value=3.6e-08 Score=84.46 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=95.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHH---------------HHHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA---------------GMAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~---------------~~~I~~~I~~ 94 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|.= =|.|+++.. ...+++.|..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (260)
T PRK05809 16 VVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLEN 95 (260)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHc
Confidence 3566654 56677788888888777766666555421 133344321 1235667778
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+.... .. + .+..|. .
T Consensus 96 ~~kPvIaav~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl---~p~~g~~----~~----l----~~~vG~--~ 156 (260)
T PRK05809 96 LDKPVIAAINGFALGGGCELSMACDI--RIASEKAKFGQPEVGLGI---TPGFGGT----QR----L----ARIVGP--G 156 (260)
T ss_pred CCCCEEEEEcCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCC---CCCccHH----HH----H----HHHhCH--H
Confidence 89999999999999999999999999 999999998764443322 1111100 00 1 111121 1
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
...+++-....++++||+++||+|+|++. ++.++
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~ 190 (260)
T PRK05809 157 KAKELIYTGDMINAEEALRIGLVNKVVEP-EKLME 190 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHH
Confidence 22233323345699999999999999873 44433
No 58
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.88 E-value=2e-08 Score=85.05 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=95.2
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEcCC------CCcH---------------HHHHHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSV---------------TAGMAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSp------GG~v---------------~~~~~I~~~I~ 93 (217)
+|+++.+ ++..+.+.+.+.|..++.++.++ ++ .+.+. |+++ .....++..|.
T Consensus 10 ~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~-vv-v~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (245)
T PF00378_consen 10 TITLNRPEKRNALNPEMLDELEEALDEAEADPDVK-VV-VISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLA 87 (245)
T ss_dssp EEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES-EE-EEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc-EE-EEeecccccccccchhhhhccccccccccchhhccccccch
Confidence 3566666 67778888989999988887767 33 33333 4444 33455677788
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++|+++.+.|.|..+|.-++++||. |++.+++.|.+.....+..-...-... +.+ .+ |.
T Consensus 88 ~~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~~----l~r---~~--------g~-- 148 (245)
T PF00378_consen 88 NFPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTFR----LPR---LI--------GP-- 148 (245)
T ss_dssp HSSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHHH----HHH---HH--------HH--
T ss_pred hhhhheeecccccccccccccccccce--EEeecccceeeeecccCcccccccccc----cce---ee--------ec--
Confidence 889999999999999999999999999 999999997764443221111111100 111 11 11
Q ss_pred HHHHhh-hCCCcccCHHHHHHcCCceeecCCCc
Q 027911 174 EKINED-TDRDFFMSAEEAKDYGLIDGVVMNPH 205 (217)
Q Consensus 174 ~~i~~~-~~~~~~lta~EA~~~GliD~I~~~~~ 205 (217)
....++ +.+. .++++||+++||||+|+++.+
T Consensus 149 ~~a~~l~l~g~-~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 149 SRARELLLTGE-PISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp HHHHHHHHHTC-EEEHHHHHHTTSSSEEESGGG
T ss_pred ccccccccccc-cchhHHHHhhcceeEEcCchh
Confidence 111122 3344 569999999999999988554
No 59
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=2.4e-08 Score=86.09 Aligned_cols=145 Identities=15% Similarity=0.099 Sum_probs=94.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH-------------------------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------------- 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------------- 85 (217)
+|+++-| ++.++.+.+.+.|..++.++.++.|+|.=+ |.|+++...
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (272)
T PRK06210 18 VITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDY 97 (272)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhH
Confidence 3566665 677778888888888877666665555411 234454321
Q ss_pred HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 027911 86 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYL 165 (217)
Q Consensus 86 ~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~ 165 (217)
..+++.|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+..+..+.. .+..... -+.+
T Consensus 98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~~~-~l~~--------- 162 (272)
T PRK06210 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLI---AEHGISW-ILPR--------- 162 (272)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCC---CCCchhh-hhHh---------
Confidence 12245677889999999999999999999999999 9999999998755433311 1110000 0001
Q ss_pred HHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 166 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 166 a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
. +......+++-....++++||+++||||+|++.
T Consensus 163 --~--ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 163 --L--VGHANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred --h--hCHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 0 112233343333345599999999999999874
No 60
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=3.8e-08 Score=84.29 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=95.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHH-------------------HHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFD 90 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~-------------------~~I~~ 90 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=+ |.|+++..- ..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (260)
T PRK05980 15 LLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTA 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 3556654 677778888888888887776766665321 234554320 12445
Q ss_pred HHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 027911 91 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 170 (217)
Q Consensus 91 ~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg 170 (217)
.|..+++||++.+.|.|..+|.-++++||. |++.+++.|++-....+ -....... . .+ .+..|
T Consensus 95 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G---l~p~~g~~----~----~l----~~~vG 157 (260)
T PRK05980 95 RLEAFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLG---MPPTFGGT----Q----RL----PRLAG 157 (260)
T ss_pred HHHhCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccC---CCCCchHh----h----HH----HhhcC
Confidence 677788999999999999999999999999 99999998876333222 11111100 0 00 11112
Q ss_pred CCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 171 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 171 ~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.....+++-....++++||+++||||+|++. ++.++
T Consensus 158 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~ 193 (260)
T PRK05980 158 --RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLP 193 (260)
T ss_pred --HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHH
Confidence 2222343333446799999999999999874 34433
No 61
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.87 E-value=3e-08 Score=84.59 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=96.7
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHH----------------HHHHHHHHhh
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHI 95 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~----------------~~I~~~I~~~ 95 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|. .=|.|+++..- ..++..|..+
T Consensus 14 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (249)
T PRK07938 14 EVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYEC 93 (249)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhC
Confidence 4566666 6666778888888877777666666653 12445665431 1234567778
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEK 175 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 175 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..|... . +.+..| ...
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~~--------------~----l~~~vg--~~~ 151 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAAT--------------H----LQRLVP--QHL 151 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhHH--------------H----HHHhcC--HHH
Confidence 8999999999999999999999999 99999998876433333211100 0 111112 223
Q ss_pred HHhhhCCCcccCHHHHHHcCCceeecCCCcccc
Q 027911 176 INEDTDRDFFMSAEEAKDYGLIDGVVMNPHKIL 208 (217)
Q Consensus 176 i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l 208 (217)
..+++-....++++||+++||+|+|++ .++.+
T Consensus 152 a~~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~ 183 (249)
T PRK07938 152 MRALFFTAATITAAELHHFGSVEEVVP-RDQLD 183 (249)
T ss_pred HHHHHHhCCcCCHHHHHHCCCccEEeC-HHHHH
Confidence 334433345679999999999999987 34433
No 62
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.86 E-value=5.8e-08 Score=83.41 Aligned_cols=151 Identities=18% Similarity=0.177 Sum_probs=94.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCC-CCceEEEEc----CCCCcHHH--------------H-------HHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDP-NKDIIMYLN----SPGGSVTA--------------G-------MAI 88 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~-~~~I~l~In----SpGG~v~~--------------~-------~~I 88 (217)
+|+++.+ ++.++...+.+.+..++.+++ ++.|+|.=. |.|+++.. . ..+
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (266)
T PRK05981 16 ILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPF 95 (266)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHH
Confidence 3556544 566677778778877765543 555555421 34455432 1 224
Q ss_pred HHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 027911 89 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH 168 (217)
Q Consensus 89 ~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~ 168 (217)
+..|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+..+..+. ..+..... . + .+.
T Consensus 96 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~---~p~~g~~~----~----l----~~~ 158 (266)
T PRK05981 96 LRRLRNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGL---VPDGGSTW----L----L----PRL 158 (266)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCC---CCCccHHH----H----H----HHH
Confidence 55677889999999999999999999999999 999999998765543322 11111000 0 0 000
Q ss_pred cCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 169 TGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 169 tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
.| .....+++-....++++||+++||||++++. ++.+++
T Consensus 159 vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~ 197 (266)
T PRK05981 159 VG--KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAE 197 (266)
T ss_pred hH--HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHH
Confidence 01 1122233323345699999999999999874 344443
No 63
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.86 E-value=3.1e-08 Score=84.90 Aligned_cols=150 Identities=19% Similarity=0.087 Sum_probs=95.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHH----------------HHHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA----------------GMAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~----------------~~~I~~~I~ 93 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++.. ...+++.|+
T Consensus 15 ~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (259)
T TIGR01929 15 KITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIR 94 (259)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHH
Confidence 3566654 66667788888888877766666655532 133455421 113456677
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .+..-. ..+.+ . .| .
T Consensus 95 ~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~---p~~~~~-~~l~~-------~----vG--~ 155 (259)
T TIGR01929 95 TCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSF---DGGYGS-SYLAR-------I----VG--Q 155 (259)
T ss_pred hCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccC---CCccHH-HHHHH-------H----hH--H
Confidence 889999999999999999999999999 9999999988755443311 110000 00111 1 11 1
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
....+++-....++++||+++||+|++++. ++.+.
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~ 190 (259)
T TIGR01929 156 KKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEK 190 (259)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHH
Confidence 122233323345699999999999999873 44433
No 64
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.85 E-value=6.4e-08 Score=83.29 Aligned_cols=144 Identities=15% Similarity=0.176 Sum_probs=93.2
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH----------------HHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~----------------~~I~~~I~~ 94 (217)
+|+++.+ ++.++.+.+.+.+..++.++.++.|+|.= =|-|+++... ..+...|+.
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (266)
T PRK08139 23 TLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVA 102 (266)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence 3556654 56677788888888777666566555531 1233444211 124456778
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+........ .+. +..| ..
T Consensus 103 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~-----~l~-----------r~vG--~~ 162 (266)
T PRK08139 103 LPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPMV-----ALS-----------RNVP--RK 162 (266)
T ss_pred CCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccHH-----HHH-----------HHhC--HH
Confidence 88999999999999999999999999 9999999987654443322111000 011 1112 22
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
...+++-....++++||+++||||+|++.
T Consensus 163 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 191 (266)
T PRK08139 163 QAMEMLLTGEFIDAATAREWGLVNRVVPA 191 (266)
T ss_pred HHHHHHHcCCccCHHHHHHcCCccEeeCh
Confidence 23344433456699999999999999973
No 65
>PLN02921 naphthoate synthase
Probab=98.85 E-value=5.8e-08 Score=86.04 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=96.4
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHH----------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG----------------MAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~----------------~~I~~~I~ 93 (217)
+|+++-+ ++..+.+.+.+.+..++.++.++.|+|.=+ |.||++... ..+...|+
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIR 158 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 3566654 677788888889988887766665555321 445665321 12345677
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.+.|.|..+|.-++++||. |++.+++.|++..+..+.... ..... .+ .+..| .
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~--~gg~~---------~L----~rliG--~ 219 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDA--GYGSS---------IM----ARLVG--Q 219 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCC--ccHHH---------HH----HHHhC--H
Confidence 889999999999999999999999999 999999999876554332100 00000 01 11112 2
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
....+++-....|+++||+++||||+|+..
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPL 249 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence 223344433456799999999999999873
No 66
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.85 E-value=4.3e-08 Score=84.68 Aligned_cols=151 Identities=19% Similarity=0.089 Sum_probs=97.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHHH----------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG----------------MAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~~----------------~~I~~~I~ 93 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++... ..+++.|.
T Consensus 25 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (273)
T PRK07396 25 KITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIR 104 (273)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHH
Confidence 3566654 67778888888898888777777666642 1445554320 12445677
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-.+..+. .....-. . .+ .+..| .
T Consensus 105 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~~~~----~----~l----~~~vG--~ 165 (273)
T PRK07396 105 TCPKPVIAMVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGS---FDGGYGA----S----YL----ARIVG--Q 165 (273)
T ss_pred hCCCCEEEEECCEEehHHHHHHHhCCE--EEeeCCcEEecccccccc---cCCchHH----H----HH----HHHhh--H
Confidence 888999999999999999999999999 999999998764443221 1111000 0 01 11112 1
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
....+++-....++++||+++||||+|++. ++.+++
T Consensus 166 ~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~ 201 (273)
T PRK07396 166 KKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKE 201 (273)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHH
Confidence 222333333446799999999999999873 444333
No 67
>PLN02888 enoyl-CoA hydratase
Probab=98.85 E-value=9.2e-08 Score=82.32 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=94.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH------------HHHHHHHHhhCCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------MAIFDTIRHIRPD 98 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~------------~~I~~~I~~~~~p 98 (217)
+|+++-+ ++.+....+.+.+..++.++.++.|+|.= =|.|+++... ..+...|..+++|
T Consensus 22 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kP 101 (265)
T PLN02888 22 TITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKP 101 (265)
T ss_pred EEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCC
Confidence 3566655 67777888888888888777677666641 1344665421 2344567788999
Q ss_pred cEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 027911 99 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINE 178 (217)
Q Consensus 99 V~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 178 (217)
|++.+.|.|..+|..++++||. |++.+++.|.+-....+ -.....-. . .+ .+..| .....+
T Consensus 102 vIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G---l~p~~g~~----~----~l----~~~vG--~~~a~~ 162 (265)
T PLN02888 102 IIGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFG---IFPSWGLS----Q----KL----SRIIG--ANRARE 162 (265)
T ss_pred EEEEECCeeechHHHHHHhCCE--EEecCCCEecCcccccc---CCCCccHh----h----HH----HHHhC--HHHHHH
Confidence 9999999999999999999999 99999998876333222 11111100 0 01 11112 122223
Q ss_pred hhCCCcccCHHHHHHcCCceeecCC
Q 027911 179 DTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 179 ~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
++-....++++||+++||||+|++.
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~ 187 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEE 187 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeCh
Confidence 3322346699999999999999874
No 68
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=5.7e-08 Score=82.84 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=94.2
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHH--------------HHHHHHHHHhhC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------GMAIFDTIRHIR 96 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~--------------~~~I~~~I~~~~ 96 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|. .=|.|+++.. ...++..|+.++
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (251)
T PRK06023 18 VIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAE 97 (251)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCC
Confidence 3566654 6777888888888888877666666553 1134455431 123556777889
Q ss_pred CCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 027911 97 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 97 ~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
+||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+.... . .+ ....| ....
T Consensus 98 kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl---~p~~g~~-----~---~l----~~~~g--~~~a 158 (251)
T PRK06023 98 KPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLAL---VPEAGSS-----L---LA----PRLMG--HQRA 158 (251)
T ss_pred CCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccCC---CCCchHH-----H---HH----HHHHh--HHHH
Confidence 999999999999999999999999 999999998764433322 1111100 0 00 00111 1222
Q ss_pred HhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 177 NEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 177 ~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.+++-....++++||+++||+|++++.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDE 185 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence 233323346799999999999999873
No 69
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=6.3e-08 Score=84.58 Aligned_cols=145 Identities=22% Similarity=0.154 Sum_probs=94.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH-------------------------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------------- 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------------- 85 (217)
+|+++.+ ++.++...+.+.|..++.++.++.|+|.=+ |.|+++...
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (296)
T PRK08260 16 TITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSD 95 (296)
T ss_pred EEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhH
Confidence 3566654 677778888888888877766666665311 344554321
Q ss_pred -------HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHH
Q 027911 86 -------MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHK 158 (217)
Q Consensus 86 -------~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~ 158 (217)
..++..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+.... .
T Consensus 96 ~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~-----~-- 163 (296)
T PRK08260 96 DGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGI---VPEAASS-----W-- 163 (296)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCc---CCCcchh-----h--
Confidence 12455677888999999999999999999999999 999999998875443321 1111100 0
Q ss_pred HHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 159 ANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 159 ~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.+ .+..| .....+++-....++++||+++||||+|++.
T Consensus 164 -~l----~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 164 -FL----PRLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred -hH----HHhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 00 11112 1222344333445799999999999999874
No 70
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=8.2e-08 Score=82.69 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=92.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH-----------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~-----------------~~I~~~I~ 93 (217)
+|+++.+ ++.++...+.+.|..++.++.++.|+|.= =|.|+++... ..+...|.
T Consensus 24 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (268)
T PRK07327 24 EIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVI 103 (268)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3566655 67777888888888888777666666531 1444554321 12344566
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..-.. -+... .|.
T Consensus 104 ~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~~-~l~~~-----------vG~-- 164 (268)
T PRK07327 104 NCDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGV---AAGDHAAI-VWPLL-----------CGM-- 164 (268)
T ss_pred cCCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCC---CCCcchhh-HHHHH-----------hCH--
Confidence 778999999999999999999999999 999999988753332221 11110000 00110 111
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
....+++-....++++||+++||||++++.
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 194 (268)
T PRK07327 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDD 194 (268)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 122223323346799999999999999863
No 71
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.84 E-value=6.7e-08 Score=83.78 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=97.6
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEE------cCCCCcHHHH-----------------HHHHHHH
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL------NSPGGSVTAG-----------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I------nSpGG~v~~~-----------------~~I~~~I 92 (217)
+|+++.+ ++.++...+.+.|..++.++.++.|+|.= =|.|+++..- ..+...|
T Consensus 24 ~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (278)
T PLN03214 24 VVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRL 103 (278)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 4667654 56667788888888888777677666632 2445554321 1134567
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. ..+... ...+.+..|
T Consensus 104 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~------------~~~l~~~~G-- 165 (278)
T PLN03214 104 LRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA------------RLFMGRVID-- 165 (278)
T ss_pred HcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH------------HHHHHHhcC--
Confidence 7788999999999999999999999999 9999999887643322210 011110 001122222
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.....+++-...-|+++||+++||+|+|+.. ++.++
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 201 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALME 201 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHH
Confidence 2333344433456799999999999999874 44333
No 72
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=4.6e-08 Score=84.61 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=95.8
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH----------------------HHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------------MAI 88 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~----------------------~~I 88 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++... ..+
T Consensus 22 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (276)
T PRK05864 22 LITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDV 101 (276)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHH
Confidence 3566655 67777788888888888777666666631 2445655321 123
Q ss_pred HHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 027911 89 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH 168 (217)
Q Consensus 89 ~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~ 168 (217)
.+.|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..- .+.... . . +.+.
T Consensus 102 ~~~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~~-----~---~----l~~~ 165 (276)
T PRK05864 102 ILALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGLS-----Y---L----LPRA 165 (276)
T ss_pred HHHHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcchh-----e---e----hHhh
Confidence 45667788999999999999999999999999 99999998875433322110 011100 0 0 1111
Q ss_pred cCCCHHHHHhh-hCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 169 TGQTLEKINED-TDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 169 tg~~~~~i~~~-~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.| .....++ +.+. .++++||+++||+|++++. ++.++
T Consensus 166 vG--~~~A~~l~l~g~-~~~a~eA~~~Glv~~vv~~-~~l~~ 203 (276)
T PRK05864 166 IG--SSRAFEIMLTGR-DVDAEEAERIGLVSRQVPD-EQLLD 203 (276)
T ss_pred hC--HHHHHHHHHcCC-ccCHHHHHHcCCcceeeCH-HHHHH
Confidence 12 2222333 3444 4699999999999999874 34333
No 73
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.84 E-value=1.2e-07 Score=81.14 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=91.1
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHH---------------HHHHHHHHHhhC
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIR 96 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~---------------~~~I~~~I~~~~ 96 (217)
|+++-+ ++.++.+.+.+.+..++ +.++.|+|.=+ |.|+++.. ...+++.|+.++
T Consensus 15 itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (255)
T PRK08150 15 IGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGR 92 (255)
T ss_pred EEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCC
Confidence 455544 56666777777777665 44555555321 33455432 123456677788
Q ss_pred CCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 027911 97 PDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 97 ~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
+||++.+.|.|..+|.-++++||. |++.+++.|++-....+ -.....-. .. + .+..| ....
T Consensus 93 kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~----~~----l----~~~iG--~~~a 153 (255)
T PRK08150 93 VPVIAALHGAVVGGGLELASAAHI--RVADESTYFALPEGQRG---IFVGGGGS----VR----V----PRLIG--VARM 153 (255)
T ss_pred CCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEeccccccC---CCCCccHH----HH----H----HHHhC--HHHH
Confidence 999999999999999999999999 99999998876433322 11111100 00 0 11112 1122
Q ss_pred HhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 177 NEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 177 ~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.+++-....|+++||+++||+|++++. ++.++
T Consensus 154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 185 (255)
T PRK08150 154 TDMMLTGRVYDAQEGERLGLAQYLVPA-GEALD 185 (255)
T ss_pred HHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHH
Confidence 333323346799999999999999884 34443
No 74
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.84 E-value=9.8e-08 Score=81.60 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=93.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------~~I~~~I 92 (217)
+|+++-| ++..+...+.+.|..++.++ ++.|+|.=+ |.|+++.+- ..+.+.|
T Consensus 11 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (256)
T TIGR02280 11 RLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRL 89 (256)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 3556554 67777888888888877666 666665311 334443210 1234567
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-.... |-..+..-.. .+ ....|
T Consensus 90 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~l---G~~p~~g~~~--------~l----~~~vG-- 150 (256)
T TIGR02280 90 RALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQAFAKI---GLIPDSGGTW--------SL----PRLVG-- 150 (256)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhc---CCCCCccHHH--------HH----HHHhC--
Confidence 7889999999999999999999999999 9999999887533322 2111111000 00 11111
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
.....+++-....++++||+++||||++++.. +.++
T Consensus 151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~ 186 (256)
T TIGR02280 151 RARAMGLAMLGEKLDARTAASWGLIWQVVDDA-ALMD 186 (256)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH-HHHH
Confidence 11222333233466999999999999998743 4443
No 75
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=9.8e-08 Score=82.00 Aligned_cols=145 Identities=20% Similarity=0.155 Sum_probs=91.0
Q ss_pred EEEEccc-----cCc-chHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH----------------------HH
Q 027911 40 IIRCGGP-----VED-DMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG----------------------MA 87 (217)
Q Consensus 40 vI~i~G~-----I~~-~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~----------------------~~ 87 (217)
+|+++-+ ++. .+.+.+.+.+..++.++.++.|+|.=+ |.|+++..- ..
T Consensus 15 ~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (266)
T PRK09245 15 TLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQR 94 (266)
T ss_pred EEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHH
Confidence 3556554 443 566777777777776666666665311 444554221 12
Q ss_pred HHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 027911 88 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSY 167 (217)
Q Consensus 88 I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~ 167 (217)
+++.|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+.. ....-. . .+ .+
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~---p~~g~~-----~---~l----~~ 157 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLI---PGDGGA-----W---LL----PR 157 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcC---CCcchh-----h---hH----HH
Confidence 345677788999999999999999999999999 9999999887644433321 111000 0 00 01
Q ss_pred hcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 168 HTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 168 ~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
..|. ....+++-....++++||+++||||+|++.
T Consensus 158 ~vG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 191 (266)
T PRK09245 158 IIGM--ARAAEMAFTGDAIDAATALEWGLVSRVVPA 191 (266)
T ss_pred HhhH--HHHHHHHHcCCCcCHHHHHHcCCcceecCH
Confidence 1111 112233323456799999999999999874
No 76
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1e-07 Score=81.64 Aligned_cols=145 Identities=16% Similarity=0.095 Sum_probs=92.4
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHHH----------HH--HHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM----------AI--FDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~~----------~I--~~~I~~~~~ 97 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=+ |.|+++.... .+ ...+..+++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~k 95 (259)
T PRK06494 16 IVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDK 95 (259)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCC
Confidence 3556544 666677888888888887776766665322 3356654311 11 122345689
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ..+.... . . +.+..| .....
T Consensus 96 PvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~----~----l~~~vg--~~~a~ 156 (259)
T PRK06494 96 PIIAAVNGVAMGGGFELALACDL--IVAAENATFALPEPRVGL---AALAGGL----H----R----LPRQIG--LKRAM 156 (259)
T ss_pred CEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCC---CCCchHH----H----H----HHHHcC--HHHHH
Confidence 99999999999999999999999 999999998775443321 1111100 0 0 111122 22223
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||||+++..
T Consensus 157 ~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (259)
T PRK06494 157 GMILTGRRVTAREGLELGFVNEVVPA 182 (259)
T ss_pred HHHHcCCcCCHHHHHHcCCCcEecCH
Confidence 33333446799999999999999874
No 77
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.1e-07 Score=82.05 Aligned_cols=149 Identities=17% Similarity=0.108 Sum_probs=96.8
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHH-----------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG-----------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~-----------------~~I~~~I 92 (217)
+|+++-+ ++..+.+.+.+.+..++.++.++.|+|.=+ |.|+++..- ..+.+.|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (269)
T PRK06127 23 RITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAAL 102 (269)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 3566655 677788888888988887776666665422 224554320 1234557
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+..-...-.. . + .+..|
T Consensus 103 ~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-------~----l----~~~vG-- 163 (269)
T PRK06127 103 ADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDGVK-------N----L----VDLVG-- 163 (269)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccHHH-------H----H----HHHhC--
Confidence 7788999999999999999999999999 99999999887554333210000000 0 0 11112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccc
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKIL 208 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l 208 (217)
.....+++-....++++||+++||+|+|++. ++.+
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~ 198 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLE 198 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHH
Confidence 1222333333446799999999999999973 4443
No 78
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.82 E-value=1.1e-07 Score=81.63 Aligned_cols=139 Identities=16% Similarity=0.152 Sum_probs=89.9
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHHHhhCCCcEEEEec
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 105 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~----------------~~~I~~~I~~~~~pV~t~v~g 105 (217)
++.++.+.+...+..++.++.++.|+|.=+ |.|+++.. ...+.+.|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 566677888888888777666666665421 34555432 112345567788999999999
Q ss_pred ccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcc
Q 027911 106 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF 185 (217)
Q Consensus 106 ~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 185 (217)
.|..+|.-++++||. |++.+++.|.+-... ..|-....... . . +.+..| .....+++-....
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~--~~G~~p~~g~~----~----~----l~~~vG--~~~a~~l~l~g~~ 173 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIAR--TLGNCLSMSNL----A----R----LVALLG--AARVKDMLFTARL 173 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHH--hccCCCCccHH----H----H----HHHHhC--HHHHHHHHHcCCC
Confidence 999999999999999 999999988753221 01221111100 0 1 111122 2223344434456
Q ss_pred cCHHHHHHcCCceeecCC
Q 027911 186 MSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 186 lta~EA~~~GliD~I~~~ 203 (217)
++++||+++||||+|++.
T Consensus 174 ~~a~eA~~~Glv~~vv~~ 191 (262)
T PRK06144 174 LEAEEALAAGLVNEVVED 191 (262)
T ss_pred cCHHHHHHcCCcCeecCH
Confidence 799999999999999875
No 79
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.81 E-value=1.5e-07 Score=79.77 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=94.4
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHH-----------------HHHHHHHH
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG-----------------MAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~-----------------~~I~~~I~ 93 (217)
+|.++.+ ++....+.+...+..++.++....++|.-. |.|+++... ..++..|.
T Consensus 12 ~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (239)
T PLN02267 12 ILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLI 91 (239)
T ss_pred EEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHh
Confidence 4566665 777777888888887776654444444322 345554321 12344566
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecC-CcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p-~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
.+++||++.+.|.|..+|.-++++||. |++.+ .+.|.+-....+.. ..... ...+..+.|..
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~--~p~~~-------------~~~l~~~vG~~ 154 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLP--LPDYF-------------MALLRAKIGSP 154 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCC--CChHH-------------HHHHHHHcChH
Confidence 778999999999999999999999999 99985 45665433322211 01110 00112222322
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHH
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 211 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~ 211 (217)
.. ..+++-....|+++||+++||+|+++.+.++.+++.
T Consensus 155 ~a-~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a 192 (239)
T PLN02267 155 AA-RRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAA 192 (239)
T ss_pred HH-HHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHH
Confidence 21 123443445679999999999999997555544443
No 80
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.80 E-value=1.1e-07 Score=81.48 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=93.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------~~I~~~I 92 (217)
+|+++.+ ++.++...+.+.+..++.++.++.|+|.=+ |-|+++..- ..+++.|
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (262)
T PRK07468 17 TLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKAL 96 (262)
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 3556654 666677778777877776665666655421 334554320 1245677
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..-.. + ..+ +.
T Consensus 97 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--~-----------~~~--vG 156 (262)
T PRK07468 97 NDLPKPLIGRIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGL---IPATISPY--V-----------VAR--MG 156 (262)
T ss_pred HcCCCCEEEEECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCC---Ccccchhh--H-----------Hhh--cc
Confidence 8889999999999999999999999999 999999988764433221 11111000 0 011 12
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-...-++++||+++||||+|++.
T Consensus 157 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 187 (262)
T PRK07468 157 EANARRVFMSARLFDAEEAVRLGLLSRVVPA 187 (262)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 2233344433456699999999999999874
No 81
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.79 E-value=1.6e-07 Score=80.29 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=90.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH---------------HH-HHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG---------------MA-IFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~---------------~~-I~~~I~~ 94 (217)
+|+++-| ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++... .. +...++.
T Consensus 11 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (255)
T PRK06563 11 LIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRR 90 (255)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhc
Confidence 3556654 66677788888887777666555544421 1334544320 11 1224667
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|..++++||. |++.+++.|.+.....+.. ...... .. + .+..|. .
T Consensus 91 ~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~~----l----~~~vG~--~ 151 (255)
T PRK06563 91 LSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGIL---PFGGAT----LR----F----PQAAGW--G 151 (255)
T ss_pred CCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCC---CCccHH----HH----H----HHHhhH--H
Confidence 78999999999999999999999999 9999999987654433321 111100 00 0 111121 1
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
...+++-....++++||+++||+|+|++.
T Consensus 152 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK06563 152 NAMRYLLTGDEFDAQEALRLGLVQEVVPP 180 (255)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCCcEeeCH
Confidence 22233333346699999999999999874
No 82
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.4e-07 Score=80.75 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=93.7
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH---------------HHHHHHHHHh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRH 94 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~---------------~~~I~~~I~~ 94 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|.=+ |.|+++.. ...+++.|..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (260)
T PRK07657 16 KITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQ 95 (260)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHh
Confidence 3566655 677788888888888887776665555311 22344422 1234566778
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+.. .+.... ..+.+ . .| ..
T Consensus 96 ~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g~~-~~l~~-------~----vG--~~ 156 (260)
T PRK07657 96 LPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAII---PGAGGT-QRLPR-------L----IG--VG 156 (260)
T ss_pred CCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcC---CCccHH-HHHHH-------H----hC--HH
Confidence 89999999999999999999999999 9999999887644433321 111100 00111 0 11 11
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
...+++-....++++||+++||+|+|++.
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPA 185 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCH
Confidence 22233323345799999999999999874
No 83
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.4e-07 Score=80.89 Aligned_cols=143 Identities=16% Similarity=0.081 Sum_probs=92.4
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH------------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~------------------~~~I~~~I 92 (217)
+|+++-+ ++.+..+.+.+.+..++.++.++.|+|.= =|.|+++.. ...+...|
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (262)
T PRK05995 16 TVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAI 95 (262)
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHH
Confidence 3556554 66667788888888777666665555531 133455432 12345567
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+.... .+ .+..|
T Consensus 96 ~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~---------~l----~~~vg-- 155 (262)
T PRK05995 96 YRCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGL---IPATISP---------YV----IRAMG-- 155 (262)
T ss_pred HcCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCccccccc---CccchHH---------HH----HHHhC--
Confidence 7788999999999999999999999999 999999998764443322 1111100 01 11112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~ 202 (217)
.....+++-....++++||+++||||+|++
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (262)
T PRK05995 156 ERAARRYFLTAERFDAAEALRLGLVHEVVP 185 (262)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCeecC
Confidence 222334333334569999999999999986
No 84
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=1.4e-07 Score=80.07 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=91.1
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHH----------HHHHHHHHHhhCCCcE
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA----------GMAIFDTIRHIRPDVS 100 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~----------~~~I~~~I~~~~~pV~ 100 (217)
+|+++-+ ++.++...+.+.+..++. +..+.|+|. .=|.|+++.. ...+.+.|..+++|++
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~I 90 (243)
T PRK07854 12 TIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVI 90 (243)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4666654 777788888888887664 345544443 1134455431 1335566778899999
Q ss_pred EEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh
Q 027911 101 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDT 180 (217)
Q Consensus 101 t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 180 (217)
+.+.|.|..+|.-++++||. |++.+++.|.+-....+ -..+.... . .+ .+..| .....+++
T Consensus 91 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---~~p~~g~~----~----~l----~~~~G--~~~a~~l~ 151 (243)
T PRK07854 91 AAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYG---IALDNWTI----R----RL----SSLVG--GGRARAML 151 (243)
T ss_pred EEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccc---cCCCccHH----H----HH----HHHhC--HHHHHHHH
Confidence 99999999999999999999 99999998875332222 11111100 0 01 11112 12223333
Q ss_pred CCCcccCHHHHHHcCCceeecC
Q 027911 181 DRDFFMSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 181 ~~~~~lta~EA~~~GliD~I~~ 202 (217)
-....++++||+++||||+|.+
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC
Confidence 3345679999999999999964
No 85
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=1.7e-07 Score=80.07 Aligned_cols=151 Identities=20% Similarity=0.089 Sum_probs=95.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHHH----------HHHHHH-HhhCCCc
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDV 99 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~~----------~I~~~I-~~~~~pV 99 (217)
+|+++-+ ++.++.+.+.+.|..++.++.++.|+|. .=|.|+++..-. .+...+ +.+++||
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPv 94 (254)
T PRK08252 15 IITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPL 94 (254)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCE
Confidence 3566654 6777888888889888877767766653 224556654311 111111 3467999
Q ss_pred EEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 027911 100 STVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 179 (217)
Q Consensus 100 ~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 179 (217)
++.+.|.|..+|.-++++||. |++.+++.|.+-....+ -..+.... .. +.++.| .....++
T Consensus 95 Iaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~----~~--------l~~~vg--~~~a~~l 155 (254)
T PRK08252 95 IAAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRG---LVAAGGGL----LR--------LPRRIP--YHIAMEL 155 (254)
T ss_pred EEEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcC---CCCCchHH----HH--------HHHHcC--HHHHHHH
Confidence 999999999999999999999 99999998875333222 21111100 00 111112 2233344
Q ss_pred hCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 180 TDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 180 ~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
+-....++++||+++||||+|++. ++.+++
T Consensus 156 ~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~ 185 (254)
T PRK08252 156 ALTGDMLTAERAHELGLVNRLTEP-GQALDA 185 (254)
T ss_pred HHcCCccCHHHHHHcCCcceecCc-chHHHH
Confidence 433446799999999999999873 344433
No 86
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=1.5e-07 Score=80.53 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=92.9
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHH-------------HHHHHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------~~~I~~~I~~~~~ 97 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=+ |.|+++.. ...++..|..+++
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (257)
T PRK05862 16 LITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRK 95 (257)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCC
Confidence 3556644 566777888888888777766666666411 23454422 1224456778889
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+.... . . +.+..|. ....
T Consensus 96 pvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl---~p~~g~~----~----~----l~~~vG~--~~a~ 156 (257)
T PRK05862 96 PVIAAVAGYALGGGCELAMMCDI--IIAADTAKFGQPEIKLGV---LPGMGGS----Q----R----LTRAVGK--AKAM 156 (257)
T ss_pred CEEEEEccEEeHHHHHHHHHCCE--EEEeCCCEEeCchhccCc---CCCccHH----H----H----HHHHhCH--HHHH
Confidence 99999999999999999999999 999999988764332221 1111100 0 0 1111121 2223
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCC
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+++-....++++||+++||+|+|++.
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPA 182 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCH
Confidence 33333346799999999999999874
No 87
>PRK08321 naphthoate synthase; Validated
Probab=98.77 E-value=1.5e-07 Score=82.42 Aligned_cols=149 Identities=19% Similarity=0.099 Sum_probs=98.2
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE-----------EcCCCCcHHHH------------------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY-----------LNSPGGSVTAG------------------ 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~-----------InSpGG~v~~~------------------ 85 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|. .=|.|+++...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 4667665 7777888898999888877777777774 33677775420
Q ss_pred -----H---HHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeec-CCcceeeecCCCCCCCCcchHHHHHHHHHH
Q 027911 86 -----M---AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPLGGAQGGQSDIDLQANEMLH 156 (217)
Q Consensus 86 -----~---~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~-p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~ 156 (217)
. .+.+.|+.+++||++.|.|.|..+|.-++++||. |++. +++.|.+-....+ -.....-. .
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~G---l~p~~~~~----~- 186 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVG---SFDGGYGS----A- 186 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccc---cCCCchHH----H-
Confidence 0 2344567788999999999999999999999999 9998 6888875333222 11110000 0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccc
Q 027911 157 HKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKIL 208 (217)
Q Consensus 157 ~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l 208 (217)
.+ .+..| .....+++-....++++||+++||||++++. ++.+
T Consensus 187 ---~L----~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~ 228 (302)
T PRK08321 187 ---YL----ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELE 228 (302)
T ss_pred ---HH----HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHH
Confidence 01 11112 2222344333456799999999999999973 4433
No 88
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.77 E-value=9e-08 Score=83.36 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=91.2
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHH---------------------------
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------------- 84 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~--------------------------- 84 (217)
|+++.+ ++.++.+.+.+.+..++.+++++.|+|.=+ |.|+++.+
T Consensus 17 ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (288)
T PRK08290 17 ITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGV 96 (288)
T ss_pred EEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccch
Confidence 555544 566677788788877776666666665311 23344321
Q ss_pred ----------HHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHH
Q 027911 85 ----------GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEM 154 (217)
Q Consensus 85 ----------~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l 154 (217)
...++..|+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+..| ....
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~----~~~~---- 166 (288)
T PRK08290 97 EQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG----VEYF---- 166 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc----chHH----
Confidence 012334577889999999999999999999999999 99999998876444333222 1100
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 155 LHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 155 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
... . ..| .....+++-....++++||+++||||++++.
T Consensus 167 -~l~----~----~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 167 -AHP----W----ELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred -HHH----H----Hhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 000 0 011 2222333333456799999999999999874
No 89
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=1.1e-07 Score=81.14 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=90.5
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHH-------------------HHHHHHHH
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDTI 92 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-------------------~~~I~~~I 92 (217)
|+++.+ ++.++...+.+.|..++.++..+.|+|.=+ |.|+++.. ...++..|
T Consensus 15 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (255)
T PRK07260 15 LTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAI 94 (255)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence 556554 666777788888877776665655554211 23344431 12344567
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.+.|.|..+|..++++||. |++.+++.|.+-....+ -..+.... . .+ .+.-|
T Consensus 95 ~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G---l~p~~g~~----~----~l----~~~vg-- 155 (255)
T PRK07260 95 KQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVG---LAPDAGGL----F----LL----TRAIG-- 155 (255)
T ss_pred HcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcC---CCCCCchh----h----hh----HHhhC--
Confidence 7789999999999999999999999999 99999998875322211 11111100 0 00 11112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||||++++.
T Consensus 156 ~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~ 186 (255)
T PRK07260 156 LNRATHLAMTGEALTAEKALEYGFVYRVAES 186 (255)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 1223344434456799999999999999874
No 90
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.76 E-value=2.3e-07 Score=79.49 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=92.2
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH-------------------HHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDT 91 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~-------------------~~I~~~ 91 (217)
+|+++-+ ++.++.+.+.+.+..++ ++.++.|+|.= =|.|+++..- ..+...
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK08140 16 TLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRR 94 (262)
T ss_pred EEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHH
Confidence 3566644 67777888888888877 66676666631 1444554321 113456
Q ss_pred HHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027911 92 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 171 (217)
Q Consensus 92 I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~ 171 (217)
|..+++||++.+.|.|..+|.-++++||. |++.+++.|..-.... |-........ . +.+. .|
T Consensus 95 l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~---G~~p~~g~~~----~----l~~~----vG- 156 (262)
T PRK08140 95 LRALPLPVIAAVNGVAAGAGANLALACDI--VLAARSASFIQAFVKI---GLVPDSGGTW----F----LPRL----VG- 156 (262)
T ss_pred HHhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEEecccccc---CCCCCccHHH----H----HHHH----hC-
Confidence 77788999999999999999999999999 9999999887533222 2211111000 0 1111 11
Q ss_pred CHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 172 TLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 172 ~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||||+|++.
T Consensus 157 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (262)
T PRK08140 157 -MARALGLALLGEKLSAEQAEQWGLIWRVVDD 187 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCccEeeCh
Confidence 1222333333445699999999999999874
No 91
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=7.6e-08 Score=81.99 Aligned_cols=140 Identities=19% Similarity=0.105 Sum_probs=90.9
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH---------------HHHHHHHHhh
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG---------------MAIFDTIRHI 95 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~---------------~~I~~~I~~~ 95 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++..- ...+..|..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (249)
T PRK05870 15 LITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASC 94 (249)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhC
Confidence 3556544 66777888888888877766666655531 1334554321 1233456678
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~---~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. .|...-+ .+..|
T Consensus 95 ~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~~~l------------------~~~~G-- 152 (249)
T PRK05870 95 PLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGATWML------------------QRAVG-- 152 (249)
T ss_pred CCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcceeeH------------------HhhhC--
Confidence 8999999999999999999999999 999999998764443221 1111111 11111
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeec
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVV 201 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~ 201 (217)
.....+++-....++++||+++||+|+++
T Consensus 153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 153 PQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 22223333334467999999999999998
No 92
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.75 E-value=2.1e-07 Score=80.45 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=93.0
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH-------------------HHHHHHH
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTI 92 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~-------------------~~I~~~I 92 (217)
|+++-+ ++..+...+.+.+..++.++.++.|+|.= =|-|+++... ..+...|
T Consensus 21 itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (275)
T PRK09120 21 VTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRL 100 (275)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 555544 67777888888888888777676666632 1334554321 1234556
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+ -.....-. . . +....|
T Consensus 101 ~~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G---l~p~~g~~-----~---~----l~~~iG-- 161 (275)
T PRK09120 101 RWYQKPTIAMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWG---IPPGGGVS-----K---A----MADTVG-- 161 (275)
T ss_pred HhCCCCEEEEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccccC---CCCCcchH-----H---H----HHHHcC--
Confidence 7788999999999999999999999999 99999998876333222 11111100 0 0 111112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||+|+|++.
T Consensus 162 ~~~a~~llltg~~~~A~eA~~~Glv~~vv~~ 192 (275)
T PRK09120 162 HRDALYYIMTGETFTGRKAAEMGLVNESVPL 192 (275)
T ss_pred HHHHHHHHhcCCccCHHHHHHcCCcceecCH
Confidence 2222333333346699999999999999873
No 93
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=3.3e-07 Score=78.68 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=95.5
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHHH----------------HH--HHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM----------------AI--FDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~~----------------~I--~~~I 92 (217)
+|+++-| ++..+.+.+.+.+..++.++.++.|+|.= =|.|+++.... .+ ...+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG 96 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHH
Confidence 3566655 66777888888888888777676666531 14456553210 01 1123
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
+.+++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+. ....... . .+ .+..|
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~----~----~l----~r~vG-- 157 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSL---FPMGGSA----V----RL----VRQIP-- 157 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCc---CCCccHH----H----HH----HHHhC--
Confidence 4678999999999999999999999999 999999998764433221 1111100 0 01 11112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
.....+++-....++++||+++||+|+|++. ++.+++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~ 194 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDK 194 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHH
Confidence 2233344433456799999999999999874 344433
No 94
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.75 E-value=2.1e-07 Score=79.55 Aligned_cols=151 Identities=16% Similarity=0.058 Sum_probs=94.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHHH-----H--------HHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM-----A--------IFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~~-----~--------I~~~I~~~~~ 97 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+|.= =|.|+++.... . +...+..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k 94 (254)
T PRK08259 15 TVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSK 94 (254)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCC
Confidence 3566654 66677888888888888777666666631 14556654311 0 0112235679
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKIN 177 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~ 177 (217)
||++.+.|.|..+|.-++++||. |++.+++.|..-....+ -....... .. + .+..| .....
T Consensus 95 PvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G---l~p~~g~~----~~----l----~~~iG--~~~a~ 155 (254)
T PRK08259 95 PVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVFCRRWG---VPLIDGGT----VR----L----PRLIG--HSRAM 155 (254)
T ss_pred CEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCcccccC---CCCCccHH----HH----H----HHHhC--HHHHH
Confidence 99999999999999999999999 99999998865333222 11111100 00 1 11112 22233
Q ss_pred hhhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 178 EDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 178 ~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
+++-....|+++||+++||||+|++. ++.+++
T Consensus 156 ~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~ 187 (254)
T PRK08259 156 DLILTGRPVDADEALAIGLANRVVPK-GQARAA 187 (254)
T ss_pred HHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHH
Confidence 44333446799999999999999874 444433
No 95
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.75 E-value=1.9e-07 Score=81.38 Aligned_cols=143 Identities=15% Similarity=0.029 Sum_probs=88.3
Q ss_pred cCcchHHHHHHHHHHhhh-----cCCCCceEEEEc-----CCCCcHHHH----------------HHHHHHHH------h
Q 027911 47 VEDDMANIIVAQLLYLDA-----VDPNKDIIMYLN-----SPGGSVTAG----------------MAIFDTIR------H 94 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~-----~~~~~~I~l~In-----SpGG~v~~~----------------~~I~~~I~------~ 94 (217)
++.+..+.+.+.+..++. ++.++.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 556677888888888776 555555555322 445554321 11233332 5
Q ss_pred hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 95 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 95 ~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+ -..+..-. . .+ .+..| ..
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG---l~p~~g~~----~----~l----~~~vG--~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN---LFPGMGAY----S----FL----ARRVG--PK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC---cCCCchHH----H----HH----HHHhh--HH
Confidence 67999999999999999999999999 99999998875333222 11111100 0 01 11112 22
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
...+++-....|+++||+++||+|++++. ++.++
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~ 214 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVED-GQGEA 214 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHH
Confidence 22344433446799999999999999874 34433
No 96
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.74 E-value=1.7e-07 Score=80.22 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=93.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHH-----------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG-----------------MAIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~-----------------~~I~~~I~ 93 (217)
+|+++-+ ++.++.+.+.+.+..++ +.++.|+|. .=|.|+++..- ..++..|+
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (255)
T PRK07112 16 FLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLA 93 (255)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 3566655 66667777777777666 234444442 11445544320 12345566
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.|.|.|..+|.-++++||. |++.+++.|.+.....+.. .... .. . +..+.| .
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~~-----~~----~----l~~~vg--~ 153 (255)
T PRK07112 94 TGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGLI---PACV-----LP----F----LIRRIG--T 153 (255)
T ss_pred cCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccC---cchh-----hH----H----HHHHhC--H
Confidence 778999999999999999999999999 9999999988755433321 1111 00 0 111112 2
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHH
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVA 212 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~ 212 (217)
....+++-....++++||+++||||+++++.++...+++
T Consensus 154 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~~~a 192 (255)
T PRK07112 154 QKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDTLLRKHL 192 (255)
T ss_pred HHHHHHHHhCCcccHHHHHHcCCCceecCcHHHHHHHHH
Confidence 222233323345699999999999999986554444433
No 97
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.74 E-value=2e-07 Score=81.64 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=94.5
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH-------------------------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------------- 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------------- 85 (217)
+|+++.+ ++.++...+.+.+..++.++.++.|+|.=+ |.|+++.+.
T Consensus 22 ~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (302)
T PRK08272 22 RITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPD 101 (302)
T ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccccccccccccccccc
Confidence 4667765 677788888888888887776766665321 344554321
Q ss_pred ---------------HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHH
Q 027911 86 ---------------MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 150 (217)
Q Consensus 86 ---------------~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~ 150 (217)
..++..|..+++||++.|.|.|..+|.-++++||. |++.+++.|++-.... .|-+.. .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~~--gg~~~~-~-- 174 (302)
T PRK08272 102 DPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTRV--WGVPAT-G-- 174 (302)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchhc--ccCChH-H--
Confidence 12355667888999999999999999999999999 9999999886533221 121110 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecC
Q 027911 151 ANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 151 ~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~ 202 (217)
.+ ..+ +......+++-....++++||+++||||++++
T Consensus 175 ---------~~----~~~--vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~ 211 (302)
T PRK08272 175 ---------MW----AYR--LGPQRAKRLLFTGDCITGAQAAEWGLAVEAVP 211 (302)
T ss_pred ---------HH----HHH--hhHHHHHHHHHcCCccCHHHHHHcCCCceecC
Confidence 00 011 12233344443445679999999999999986
No 98
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.73 E-value=1.5e-07 Score=80.99 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=94.2
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------------HHHHHHHH
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------MAIFDTIR 93 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------~~I~~~I~ 93 (217)
|+++-+ ++..+...+.+.+..++.++.++.|+|.=+ |.|+++... ..+...|+
T Consensus 19 itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (265)
T PRK05674 19 LWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLY 98 (265)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHH
Confidence 455544 666777888888888777776776666321 445554310 13445566
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.|.|.|..+|.-++++||. |++.+++.|.+-....+ -..+.... .+ .+..|.
T Consensus 99 ~~~kPvIaaV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~G---i~p~~~~~---------~l----~~~vG~-- 158 (265)
T PRK05674 99 RLKIPTLAVVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIG---LAPAVISP---------FV----VKAIGE-- 158 (265)
T ss_pred cCCCCEEEEEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccC---CCcchhHH---------HH----HHHhCH--
Confidence 788999999999999999999999999 99999998876333222 21111100 01 111122
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCCCcccch
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQ 209 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~ 209 (217)
....+++-....|+++||+++||||+|++. ++.++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 193 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEA 193 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHH
Confidence 222233323345699999999999999873 44333
No 99
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=2.6e-07 Score=78.69 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=91.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH------------HHHHHHHHhhCCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------MAIFDTIRHIRPD 98 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~------------~~I~~~I~~~~~p 98 (217)
+|+++-| ++.++.+.+.+.+..++.++.++.|+|.= =|.|+++..- ..++..|+.+++|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI 91 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4566654 67777888888888888776666666531 1445665421 2244556778899
Q ss_pred cEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 027911 99 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINE 178 (217)
Q Consensus 99 V~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~ 178 (217)
|++.+.|.|..+|.-++++||. |++.+++.|.+.....+ -..+..-. . .+ .+..|. ...+-
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G---l~p~~g~~-----~---~l----~~~~g~--~a~~l 152 (248)
T PRK06072 92 YISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLG---LASDTGVA-----Y---FL----LKLTGQ--RFYEI 152 (248)
T ss_pred EEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcC---cCCCchHH-----H---HH----HHHhhH--HHHHH
Confidence 9999999999999999999999 99999999876444322 22111100 0 00 111121 11112
Q ss_pred hhCCCcccCHHHHHHcCCceee
Q 027911 179 DTDRDFFMSAEEAKDYGLIDGV 200 (217)
Q Consensus 179 ~~~~~~~lta~EA~~~GliD~I 200 (217)
++.+. .++++||+++||||++
T Consensus 153 ll~g~-~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 153 LVLGG-EFTAEEAERWGLLKIS 173 (248)
T ss_pred HHhCC-ccCHHHHHHCCCcccc
Confidence 34444 5699999999999964
No 100
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.71 E-value=2e-07 Score=79.83 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=92.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC------CcHHH------------------HHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA------------------GMAIFD 90 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG------G~v~~------------------~~~I~~ 90 (217)
+|+++-+ ++.++...+.+.+..++.++.++.|+| .+.| +++.. ...+++
T Consensus 18 ~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (260)
T PRK07827 18 TLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLR 95 (260)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 3556654 566677777777877776655555554 3333 33321 122345
Q ss_pred HHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 027911 91 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 170 (217)
Q Consensus 91 ~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg 170 (217)
.|..+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..... +. .+.. .
T Consensus 96 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl---~p~~g~~~--~l--~~l~-~------- 158 (260)
T PRK07827 96 AIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGV---APAIISLT--LL--PRLS-P------- 158 (260)
T ss_pred HHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCC---CCCcccch--hH--Hhhh-H-------
Confidence 566778999999999999999999999999 999999988763332221 11111000 00 0000 0
Q ss_pred CCHHHHHhh-hCCCcccCHHHHHHcCCceeecCCCcccchHHH
Q 027911 171 QTLEKINED-TDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVA 212 (217)
Q Consensus 171 ~~~~~i~~~-~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~ 212 (217)
....++ +.+ ..++++||+++||||++.++..+..++++
T Consensus 159 ---~~a~~l~l~g-~~~~a~eA~~~Glv~~v~~~l~~~a~~~a 197 (260)
T PRK07827 159 ---RAAARYYLTG-EKFGAAEAARIGLVTAAADDVDAAVAALL 197 (260)
T ss_pred ---HHHHHHHHhC-CccCHHHHHHcCCcccchHHHHHHHHHHH
Confidence 011122 344 45699999999999999765444444443
No 101
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.71 E-value=3.7e-07 Score=81.45 Aligned_cols=144 Identities=17% Similarity=0.083 Sum_probs=94.5
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH------------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA------------------GMAIFDT 91 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~------------------~~~I~~~ 91 (217)
+|+++-+ ++.++...+...+..+..++.++.|+|.=. |-|+++.+ ...+.+.
T Consensus 40 ~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (360)
T TIGR03200 40 WIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSA 119 (360)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHH
Confidence 4667765 677788888888988887766666665321 23454332 1235566
Q ss_pred HHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027911 92 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 171 (217)
Q Consensus 92 I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~ 171 (217)
|..+++||++.+.|.|..+|.-|+++||. |++.+++.|.+-.+..+ -....... .-+.. . .|.
T Consensus 120 i~~~pKPVIAAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG---l~P~~Ggt-~rLpr-------l----vG~ 182 (360)
T TIGR03200 120 ILGCDKPVICRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG---SAPIGGAT-DFLPL-------M----IGC 182 (360)
T ss_pred HHhCCCCEEEEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC---CCCCccHH-HHHHH-------h----hCH
Confidence 77889999999999999999999999999 99999999887444332 11111100 00111 1 111
Q ss_pred CHHHHHh-hhCCCcccCHHHHHHcCCceeecCC
Q 027911 172 TLEKINE-DTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 172 ~~~~i~~-~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
..... ++.++ .++++||+++||||++++.
T Consensus 183 --~rA~~llltGe-~~sA~EA~~~GLVd~VVp~ 212 (360)
T TIGR03200 183 --EQAMVSGTLCE-PWSAHKAKRLGIIMDVVPA 212 (360)
T ss_pred --HHHHHHHHhCC-cCcHHHHHHcCChheecCc
Confidence 11122 23444 6699999999999999874
No 102
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.70 E-value=1.9e-07 Score=80.05 Aligned_cols=141 Identities=20% Similarity=0.144 Sum_probs=89.0
Q ss_pred EEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH----------------HHHHHHHHhh
Q 027911 41 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHI 95 (217)
Q Consensus 41 I~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~----------------~~I~~~I~~~ 95 (217)
|+++-+ ++.++.+.+.+.+..+ .++.++.|+|.= =|.|+++..- ..++..|..+
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (260)
T PRK07659 19 IMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTM 97 (260)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhC
Confidence 556554 6667778888888777 344454444321 1334554321 1234456667
Q ss_pred CCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 027911 96 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEK 175 (217)
Q Consensus 96 ~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~ 175 (217)
++||++.+.|.|..+|.-++++||. |++.+++.|.+.....+.. .+.... . .+ .++ +....
T Consensus 98 ~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~~----~----~L----~~~--vg~~~ 158 (260)
T PRK07659 98 PKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLI---PDGGGH----F----FL----QKR--VGENK 158 (260)
T ss_pred CCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCC---CCCchh----h----hH----HHh--cCHHH
Confidence 8999999999999999999999999 9999999887655433221 111000 0 00 111 12233
Q ss_pred HHhhhCCCcccCHHHHHHcCCceeec
Q 027911 176 INEDTDRDFFMSAEEAKDYGLIDGVV 201 (217)
Q Consensus 176 i~~~~~~~~~lta~EA~~~GliD~I~ 201 (217)
..+++-....++++||+++||+|+++
T Consensus 159 a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 159 AKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCChHHHh
Confidence 33444344567999999999999998
No 103
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.70 E-value=1.5e-07 Score=80.43 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=103.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHHHH-------------HHHHHHhhCC
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGMA-------------IFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~~~-------------I~~~I~~~~~ 97 (217)
+|.||-| ++..+...+.+.+..+++++..+.|+|+= =+.|.++.+... .++.+..+++
T Consensus 49 lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~K 128 (290)
T KOG1680|consen 49 LITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKK 128 (290)
T ss_pred EEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhccc
Confidence 4566655 56667888999999999888777777641 133444443333 3556667889
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLE 174 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~---~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~ 174 (217)
||++-+.|.|-.+|.-+++.||. |+|.++|.|++-++..+. .|-..-+. +++ |.+
T Consensus 129 PvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~rl~--------------r~v----G~s-- 186 (290)
T KOG1680|consen 129 PVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQRLP--------------RIV----GKS-- 186 (290)
T ss_pred ceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchhhHH--------------HHh----ChH--
Confidence 99999999999999999999999 999999999987665442 22221111 111 222
Q ss_pred HHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHH
Q 027911 175 KINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPV 211 (217)
Q Consensus 175 ~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~ 211 (217)
...+++-....++++||++.|||++|+...+ +|.+-
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~-~l~eA 222 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPSGD-ALGEA 222 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecchh-HHHHH
Confidence 2234444556779999999999999998554 55443
No 104
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=5e-07 Score=76.00 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=86.1
Q ss_pred EEEEccc----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH--------------HHHHHHHHHhhCC
Q 027911 40 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA--------------GMAIFDTIRHIRP 97 (217)
Q Consensus 40 vI~i~G~----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~--------------~~~I~~~I~~~~~ 97 (217)
+|+++.+ ++.++.+.+.+.+..++ +..+.|++.= =|.|+++.. ...+...|..+++
T Consensus 15 ~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 92 (229)
T PRK06213 15 TITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPK 92 (229)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCC
Confidence 3566654 66667778877777665 2233333321 023444321 1234455667789
Q ss_pred CcEEEEecccccHHHHHHhcCCCCceeecCC-cceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 027911 98 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKI 176 (217)
Q Consensus 98 pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~-s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i 176 (217)
||++.+.|.|..+|.-++++||. |++.++ +.|.+-....+. .+.... ... +.++.|. ...
T Consensus 93 PvIAav~G~a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl--~~~~~~-----~~~--------l~~~~g~--~~a 153 (229)
T PRK06213 93 PVIVACTGHAIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGM--TMPHAA-----IEL--------ARDRLTP--SAF 153 (229)
T ss_pred CEEEEEcCeeeHHHHHHHHhCCe--eeEecCCcEEECchhhhCC--cCChHH-----HHH--------HHHHcCH--HHH
Confidence 99999999999999999999999 999998 877763332221 011100 000 0111121 222
Q ss_pred HhhhCCCcccCHHHHHHcCCceeecC
Q 027911 177 NEDTDRDFFMSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 177 ~~~~~~~~~lta~EA~~~GliD~I~~ 202 (217)
.+++-....++++||+++||+|+|++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~ 179 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVP 179 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccC
Confidence 23333345679999999999999986
No 105
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.67 E-value=1.7e-07 Score=82.06 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=95.0
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHH-------------------H------
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------G------ 85 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~-------------------~------ 85 (217)
+|+++-| ++..+.+.+.+.+..++.++.++.|+|.= =|-|+++.. .
T Consensus 17 ~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (298)
T PRK12478 17 TITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTA 96 (298)
T ss_pred EEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhh
Confidence 3566655 67778888888888888777676666631 133454421 0
Q ss_pred -----HHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHH
Q 027911 86 -----MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKAN 160 (217)
Q Consensus 86 -----~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~ 160 (217)
...+..|..+++||++.|.|.|..+|.-++++||. |++.+++.|.+-.... .|-.. .. . + .
T Consensus 97 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l--~G~~~-~~-~---~---~-- 162 (298)
T PRK12478 97 RETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRM--WGAYL-TG-M---W---L-- 162 (298)
T ss_pred hhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEecccccc--ccCCc-hh-H---H---H--
Confidence 01344577788999999999999999999999999 9999999988754432 11110 00 0 0 0
Q ss_pred HHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 161 LNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 161 ~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.+ +......+++-....++++||+++||||+|+..
T Consensus 163 ------~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 163 ------YR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred ------HH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 01 123333444434456799999999999999873
No 106
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.61 E-value=5.1e-07 Score=77.19 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=94.2
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEE----EcCCCCcHHHHH----------------HHHHHHHhhCCCcEEEEecc
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------------AIFDTIRHIRPDVSTVCVGL 106 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~----InSpGG~v~~~~----------------~I~~~I~~~~~pV~t~v~g~ 106 (217)
++.++...+.+.+..++.++.++.|+|. .=|-|+++..-. .+...|+.+++||++.+.|.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 108 (257)
T COG1024 29 LNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGY 108 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcce
Confidence 6777888888999888887666666653 224456665421 25667888899999999999
Q ss_pred cccHHHHHHhcCCCCceeecCCcceeeecCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-hCCCc
Q 027911 107 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED-TDRDF 184 (217)
Q Consensus 107 aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~-~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~-~~~~~ 184 (217)
|..+|.-++++||. |++.+++.|++.....+. .|.-.... +.+. .|. ....++ +.+ .
T Consensus 109 a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~~-----l~r~-----------~G~--~~a~~l~ltg-~ 167 (257)
T COG1024 109 ALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQR-----LPRL-----------LGR--GRAKELLLTG-E 167 (257)
T ss_pred EeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHHH-----HHHh-----------cCH--HHHHHHHHcC-C
Confidence 99999999999999 999999999876654332 22211000 1111 111 111222 444 4
Q ss_pred ccCHHHHHHcCCceeecCCC
Q 027911 185 FMSAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 185 ~lta~EA~~~GliD~I~~~~ 204 (217)
.++++||+++||+|+++...
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 168 PISAAEALELGLVDEVVPDA 187 (257)
T ss_pred cCCHHHHHHcCCcCeeeCCH
Confidence 55999999999999998854
No 107
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.57 E-value=1.5e-06 Score=76.33 Aligned_cols=130 Identities=23% Similarity=0.313 Sum_probs=87.2
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCcEEEEecccccHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-------~~~~I~~~I~---~~~~pV~t~v~g~aaSag~~ 113 (217)
.|.+++..++...+-++..+. -.-+|+-.+||||..+. .+..+...+. +...|+++++.|.|.|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAl 206 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGAL 206 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHh
Confidence 355666666666655554443 24688999999997732 2344555554 45689999999999999999
Q ss_pred HHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHH
Q 027911 114 LLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 193 (217)
Q Consensus 114 Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~ 193 (217)
.+..+|. ++|.|++.+.+-.|.+ +..+....... .++..+ ..-+|+.++++
T Consensus 207 a~~~aD~--v~m~~~a~~sVisPEg------------~a~Il~kd~~~-----------a~~aae----~~~~ta~~l~~ 257 (316)
T TIGR00513 207 AIGVGDK--VNMLEYSTYSVISPEG------------CAAILWKDASK-----------APKAAE----AMKITAPDLKE 257 (316)
T ss_pred hhccCCE--EEEecCceEEecCHHH------------HHHHhccchhh-----------HHHHHH----HccCCHHHHHH
Confidence 8888998 9999999998877722 11111111000 111112 13348999999
Q ss_pred cCCceeecCCC
Q 027911 194 YGLIDGVVMNP 204 (217)
Q Consensus 194 ~GliD~I~~~~ 204 (217)
.|+||+|+.-+
T Consensus 258 ~G~iD~II~ep 268 (316)
T TIGR00513 258 LGLIDSIIPEP 268 (316)
T ss_pred CCCCeEeccCC
Confidence 99999999744
No 108
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.56 E-value=2.8e-06 Score=77.32 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=96.8
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------H----H---HHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M----A---IFDT 91 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------~----~---I~~~ 91 (217)
+|+++-| ++.++...+.+.|..++.++.++.|+|.=. |-||++.+- . . +...
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 5677776 777888889899988888777776666422 557776431 0 1 2234
Q ss_pred HHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027911 92 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 171 (217)
Q Consensus 92 I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~ 171 (217)
|..+++|+++.+.|.|..+|.-|+++||. |++.+++.|.+-....+. ..+..-.. .+.+. .|.
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl---~Pd~G~s~-~L~rl-----------~G~ 191 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGF---HPDAGASF-NLSHL-----------PGR 191 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCC---CCCccHHH-HHHHh-----------hhH
Confidence 77788999999999999999999999999 999999988764443332 22221100 01111 111
Q ss_pred CHHHHHhh-hCCCcccCHHHHHHcCCceeecCCC
Q 027911 172 TLEKINED-TDRDFFMSAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 172 ~~~~i~~~-~~~~~~lta~EA~~~GliD~I~~~~ 204 (217)
.-..+ +.+ ..++++||+++||+|+++.+.
T Consensus 192 ---~a~~L~LTG-~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 192 ---LGEYLGLTG-LKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred ---HHHHHHHcC-CcCCHHHHHHcCCceEEeCHh
Confidence 01122 344 466999999999999998743
No 109
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.56 E-value=1e-06 Score=85.47 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=94.0
Q ss_pred EEEEccc------cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHH----------------HHHHHHHH
Q 027911 40 IIRCGGP------VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA----------------GMAIFDTI 92 (217)
Q Consensus 40 vI~i~G~------I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~----------------~~~I~~~I 92 (217)
+|+++-+ ++.++...+.+.|..++.++.++.|+|.= =|-|+++.. ...++..|
T Consensus 13 ~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (699)
T TIGR02440 13 ILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAEL 92 (699)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHH
Confidence 4666655 66777788888888888776666665532 144555532 13356678
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCC--cceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 170 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~--s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg 170 (217)
..+++||++.+.|.|..+|.-++++||. |++.++ +.|++.....+.. ....-. .. + .+..|
T Consensus 93 ~~~~kPvIAaVnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~---p~~g~~----~~----L----~r~vG 155 (699)
T TIGR02440 93 EALPIPVVAAIHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLL---PGSGGT----QR----L----PRLIG 155 (699)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCC---CCccHH----HH----H----HHhcC
Confidence 8889999999999999999999999999 999987 4566544433321 111000 00 0 11112
Q ss_pred CCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 171 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 171 ~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||+|++++.
T Consensus 156 --~~~A~~llltG~~~~a~eA~~~GLV~~vv~~ 186 (699)
T TIGR02440 156 --VSTALDMILTGKQLRAKQALKLGLVDDVVPQ 186 (699)
T ss_pred --HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh
Confidence 1222344334456699999999999999874
No 110
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.55 E-value=8.5e-07 Score=83.63 Aligned_cols=147 Identities=14% Similarity=0.035 Sum_probs=92.2
Q ss_pred cCcchHHHHHHHHHHhh-hcCCCCceEEEEc-----CCCCcHHHHH---------------H----HHHHHHhhCCCcEE
Q 027911 47 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAGM---------------A----IFDTIRHIRPDVST 101 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~-~~~~~~~I~l~In-----SpGG~v~~~~---------------~----I~~~I~~~~~pV~t 101 (217)
++.++...+.+.+..++ .++.++.|+|.=+ |.|+++..-. . +.+.++.+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66667788888888877 5566666766432 5566654210 1 34456678899999
Q ss_pred EEecccccHHHHHHhcCCCCceeecCC--cceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 027911 102 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 179 (217)
Q Consensus 102 ~v~g~aaSag~~Ia~ag~~~~r~~~p~--s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 179 (217)
.+.|.|..+|..++++||. |++.++ +.|.+-... ..|-....... .. +...+........++
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~--~~Gl~P~~gg~----~r--------l~~~~~vg~~~A~~l 192 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVP--LLGVLPGTGGL----TR--------VTDKRKVRRDLADIF 192 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchh--ccccCCCcchH----HH--------hhhhhhcCHHHHHHH
Confidence 9999999999999999999 999987 666552221 11211111100 00 011112233333444
Q ss_pred hCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 180 TDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 180 ~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
+-....++++||+++||||++++. ++.+++
T Consensus 193 lltG~~i~AeeA~~~GLVd~vv~~-d~l~~~ 222 (550)
T PRK08184 193 CTIEEGVRGKRAVDWRLVDEVVKP-SKFDAK 222 (550)
T ss_pred HHhCCcccHHHHHHcCCccEeeCH-HHHHHH
Confidence 333446799999999999999974 344333
No 111
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.54 E-value=2.1e-06 Score=73.60 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=88.7
Q ss_pred EccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHH-------HHHHHHHHH---hhCCCcEEEEecccccHHH
Q 027911 43 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGLAASMGA 112 (217)
Q Consensus 43 i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~-------~~~I~~~I~---~~~~pV~t~v~g~aaSag~ 112 (217)
..|.++++.++...+-++.+... .-+|+-.+||||..+.. +..+...+. ..+.|+++++.|.|.|+|+
T Consensus 75 ~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA 152 (256)
T PRK12319 75 NFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGA 152 (256)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHH
Confidence 45667777777766655544432 46888899999987421 234444444 3358999999999999999
Q ss_pred HHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHH
Q 027911 113 FLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAK 192 (217)
Q Consensus 113 ~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~ 192 (217)
+.+..+|. .+|.|++.+.+-.|.. ...+.... ....++..+.+ -+|+.++.
T Consensus 153 ~a~~~~D~--v~m~~~a~~~v~~pe~------------~a~il~~~-----------~~~a~~aa~~~----~~~a~~l~ 203 (256)
T PRK12319 153 LALAVADQ--VWMLENTMYAVLSPEG------------FASILWKD-----------GSRATEAAELM----KITAGELL 203 (256)
T ss_pred HHhhcCCE--EEEecCceEEEcCHHH------------HHHHHhcC-----------cccHHHHHHHc----CCCHHHHH
Confidence 99999998 9999999998877721 11111100 01112222222 34999999
Q ss_pred HcCCceeecCCC
Q 027911 193 DYGLIDGVVMNP 204 (217)
Q Consensus 193 ~~GliD~I~~~~ 204 (217)
+.|+||+|++.+
T Consensus 204 ~~g~iD~ii~e~ 215 (256)
T PRK12319 204 EMGVVDKVIPEH 215 (256)
T ss_pred HCCCCcEecCCC
Confidence 999999999754
No 112
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.52 E-value=1.5e-06 Score=84.50 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=95.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHH------------------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------------MAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~------------------~~I~~~I 92 (217)
+|+++-+ ++.++.+.+.+.+..++.++.++.|+|.=+ |.|+++..- ..+.+.|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (715)
T PRK11730 19 ELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRL 98 (715)
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 3566654 566777888888888877766666665321 345555321 1245567
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQT 172 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~ 172 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++.|++-....+. ..+..-. .. + .+..|
T Consensus 99 ~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl---~p~~g~~----~~----L----~rlvG-- 159 (715)
T PRK11730 99 EDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGI---MPGFGGT----VR----L----PRLIG-- 159 (715)
T ss_pred HcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCC---CCCchHH----HH----H----HHhcC--
Confidence 7788999999999999999999999999 999999998874443321 1111100 00 0 11112
Q ss_pred HHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 173 LEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 173 ~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||+|++++.
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~ 190 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP 190 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH
Confidence 2222344433456799999999999999864
No 113
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.50 E-value=2.1e-06 Score=83.36 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=96.3
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHH------------------HHHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTI 92 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~------------------~~~I~~~I 92 (217)
+|+++-+ ++..+...+.+.|..++.++.++.|+|.=+ |-|+++.. ...+++.|
T Consensus 19 ~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (714)
T TIGR02437 19 ELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKL 98 (714)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 4667655 677778888888888887777776665422 33444421 23466778
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 171 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~-~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~ 171 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++.|++-....+. .|-..... +. +..|.
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~Ggt~r-----L~-----------rliG~ 160 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFGGTVR-----LP-----------RVIGA 160 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCccHHHH-----HH-----------HHhCH
Confidence 8889999999999999999999999999 999999998875443332 11111000 11 11121
Q ss_pred CHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 172 TLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 172 ~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
. ...+++-....++++||+++||+|+++..
T Consensus 161 ~--~A~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 161 D--NALEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred H--HHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 1 22233333445799999999999999863
No 114
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.49 E-value=1.9e-06 Score=75.78 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=86.4
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCcEEEEecccccHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-------~~~~I~~~I~---~~~~pV~t~v~g~aaSag~~ 113 (217)
.|.++++.++...+-++.++. -.-+|+-.+||||..+. .+..+...+. +.+.|+++++.|.|.|+|++
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAl 206 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGAL 206 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHH
Confidence 344556666666555544333 24688999999996532 1234444444 55689999999999999999
Q ss_pred HHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHH
Q 027911 114 LLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 193 (217)
Q Consensus 114 Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~ 193 (217)
.+..+|. ++|.|++.+.+-.|.+ +..+..... .+ .++..+ ..-+|+.++++
T Consensus 207 a~~~aD~--v~m~~~A~~svisPEg------------~a~Il~~~~----------~~-a~~aae----~~~ita~~l~~ 257 (319)
T PRK05724 207 AIGVGDR--VLMLEYSTYSVISPEG------------CASILWKDA----------SK-APEAAE----AMKITAQDLKE 257 (319)
T ss_pred HHhccCe--eeeecCceEeecCHHH------------HHHHHhcCc----------hh-HHHHHH----HcCCCHHHHHH
Confidence 9888998 9999999998877721 111111110 11 112222 23469999999
Q ss_pred cCCceeecCCC
Q 027911 194 YGLIDGVVMNP 204 (217)
Q Consensus 194 ~GliD~I~~~~ 204 (217)
.|+||+|+.-+
T Consensus 258 ~g~iD~II~Ep 268 (319)
T PRK05724 258 LGIIDEIIPEP 268 (319)
T ss_pred CCCceEeccCC
Confidence 99999998744
No 115
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.49 E-value=5.4e-06 Score=75.00 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHHH-------------------HHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFDT 91 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~~-------------------~I~~~ 91 (217)
+|+++-+ ++.++...+.+.|..++.++.++.|+|.=+ |-||++..-. .+...
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~ 100 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV 100 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 4677766 677788889999988887776766665421 3467764311 12235
Q ss_pred HHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027911 92 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ 171 (217)
Q Consensus 92 I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~ 171 (217)
|..+++|+++.+.|.|..+|.-|+++||. |++.+++.|.+-....+. ..+..-. -.+.+.. ...+
T Consensus 101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl---~Pd~G~s-~~L~rl~----G~~~----- 165 (381)
T PLN02988 101 MATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGL---FPDVGAS-YFLSRLP----GFFG----- 165 (381)
T ss_pred HHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCc---CCCccHH-HHHHHHH----HHHH-----
Confidence 67789999999999999999999999999 999999988754333322 1121110 0011111 1101
Q ss_pred CHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 172 TLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 172 ~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
. .-.+.+. .++++||+++||+|+++.+
T Consensus 166 --~--~l~LTG~-~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 166 --E--YVGLTGA-RLDGAEMLACGLATHFVPS 192 (381)
T ss_pred --H--HHHHcCC-CCCHHHHHHcCCceEecCH
Confidence 0 1123444 5699999999999999874
No 116
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.48 E-value=3.9e-06 Score=76.40 Aligned_cols=147 Identities=13% Similarity=0.030 Sum_probs=97.1
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc----CCCCcHHHHH-------------------HHH
Q 027911 38 HRIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIF 89 (217)
Q Consensus 38 ~~vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In----SpGG~v~~~~-------------------~I~ 89 (217)
..+|+++-+ ++.++...+.+.|..++.++.++.|+|.=+ |-||++.+.. .+.
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~ 131 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFV 131 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 346778777 777888999999998888877776665422 4467654311 122
Q ss_pred HHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 027911 90 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHT 169 (217)
Q Consensus 90 ~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~t 169 (217)
..|..+++|+++.+.|.|..+|.-|+++||. |++.+++.|.+-....+. ..+..... .+.+.... .+
T Consensus 132 ~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl---~PdvG~s~-~L~rl~g~----~g--- 198 (407)
T PLN02851 132 YLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGF---HPDAGASY-YLSRLPGY----LG--- 198 (407)
T ss_pred HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCC---CCCccHHH-HHHHhcCH----HH---
Confidence 3455678999999999999999999999999 999999988765443332 12221100 01111110 01
Q ss_pred CCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCC
Q 027911 170 GQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 170 g~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~ 204 (217)
. .-.+++. .++++||+++||+|+++.+.
T Consensus 199 ----~--~L~LTG~-~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 199 ----E--YLALTGQ-KLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred ----H--HHHHhCC-cCCHHHHHHCCCceeecCHh
Confidence 0 1124444 56999999999999998654
No 117
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.47 E-value=3.2e-06 Score=82.16 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=93.9
Q ss_pred EEEEccc------cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHH
Q 027911 40 IIRCGGP------VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTI 92 (217)
Q Consensus 40 vI~i~G~------I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~----------------~~~I~~~I 92 (217)
+|+++-+ ++.++...+...+..++.++.++.|+|.=. |-|+++.. ...+++.|
T Consensus 18 ~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (708)
T PRK11154 18 VITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEI 97 (708)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4667644 566777888888888877665665555311 34455432 12356678
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCc--ceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTG 170 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s--~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg 170 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++ .|++.....+. .....-. .. +....|
T Consensus 98 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl---~p~~gg~----~~--------L~r~vG 160 (708)
T PRK11154 98 EALPIPVVAAIHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGL---LPGSGGT----QR--------LPRLIG 160 (708)
T ss_pred HhCCCCEEEEECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCC---CCCccHH----hH--------HHhhcC
Confidence 8889999999999999999999999999 9999975 56655443332 1111100 00 111112
Q ss_pred CCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 171 QTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 171 ~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.....+++-....++++||+++||+|+++..
T Consensus 161 --~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 161 --VSTALDMILTGKQLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred --HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh
Confidence 2223344434456799999999999999874
No 118
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.46 E-value=3e-06 Score=76.57 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=86.2
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-------~~~~I~~~I~---~~~~pV~t~v~g~aaSag~~I 114 (217)
|.++++.++...+-++.++.- .-+|+-.+||||..+. .+.+|...+. ..+.|+++++.|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 445566666666555544432 4688899999997641 2344555554 456899999999999999999
Q ss_pred HhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHc
Q 027911 115 LSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDY 194 (217)
Q Consensus 115 a~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~ 194 (217)
+.+||. .+|.+++.+.+..|.+ +..+..... .... +.. ...-+|+.+++++
T Consensus 278 lg~aD~--VlMle~A~ysVisPEg------------aAsILwkd~----------~~A~-eAA----ealkitA~dL~~~ 328 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEA------------CAAILWKSA----------AAAP-KAA----EALRITAAELVKL 328 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHH------------HHHHHhccc----------cchH-HHH----HHcCCCHHHHHhC
Confidence 888998 9999999988877721 111111100 0011 111 1235699999999
Q ss_pred CCceeecCCC
Q 027911 195 GLIDGVVMNP 204 (217)
Q Consensus 195 GliD~I~~~~ 204 (217)
|+||+|+.-+
T Consensus 329 GiID~II~Ep 338 (431)
T PLN03230 329 GVVDEIVPEP 338 (431)
T ss_pred CCCeEeccCC
Confidence 9999998744
No 119
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.44 E-value=5.9e-06 Score=80.57 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=92.5
Q ss_pred EEEEccc------cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHH----------------HHHHHHHH
Q 027911 40 IIRCGGP------VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTI 92 (217)
Q Consensus 40 vI~i~G~------I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~----------------~~~I~~~I 92 (217)
+|+++.+ ++..+...+.+.+..++.++.++.++|.-. |-|+++.. ...+++.|
T Consensus 25 ~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i 104 (737)
T TIGR02441 25 VVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERI 104 (737)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 3556643 455677888888888877666655444222 33455432 23466778
Q ss_pred HhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCc--ceeeecCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 027911 93 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYLSYHT 169 (217)
Q Consensus 93 ~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s--~i~ih~~~~~~-~G~~~~~~~~~~~l~~~~~~~~~~~a~~t 169 (217)
..+++||++.+.|.|..+|.-++++||. |++.+++ .|++.....+. .|-.... ++ .+..
T Consensus 105 ~~~~kPvIAav~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Ggt~------------rL----prli 166 (737)
T TIGR02441 105 EKSQKPIVAAISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGGTQ------------RL----PKLT 166 (737)
T ss_pred HhCCCCEEEEECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccHhh------------hH----HHhh
Confidence 8889999999999999999999999999 9999985 56654433221 1110000 01 1111
Q ss_pred CCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 170 GQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 170 g~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
|. ....+++-.+..++++||+++||||+|++.
T Consensus 167 G~--~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 167 GV--PAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred CH--HHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 21 122234434456699999999999999986
No 120
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.43 E-value=2.2e-06 Score=76.47 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=90.6
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE-----cCCCCcHHHH-------------------HHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG-------------------MAIFD 90 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-----nSpGG~v~~~-------------------~~I~~ 90 (217)
+|+++-| ++..+.+.+.+.+..++.++.++.|+|.= =|.|+++..- ..+..
T Consensus 15 ~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (342)
T PRK05617 15 VITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNA 94 (342)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHH
Confidence 3556655 66777788888888777666555555431 1234554321 12345
Q ss_pred HHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHH
Q 027911 91 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA---QGGQSDIDLQANEMLHHKANLNGYLSY 167 (217)
Q Consensus 91 ~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~---~G~~~~~~~~~~~l~~~~~~~~~~~a~ 167 (217)
.|..+++||++.+.|.|..+|.-++++||. |++.+++.|++-....+. .|...-+. +
T Consensus 95 ~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L~-------r----------- 154 (342)
T PRK05617 95 LIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFLS-------R----------- 154 (342)
T ss_pred HHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEeh-------h-----------
Confidence 677888999999999999999999999999 999999998764443321 12111111 0
Q ss_pred hcCCCHHHHHh-hhCCCcccCHHHHHHcCCceeecCC
Q 027911 168 HTGQTLEKINE-DTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 168 ~tg~~~~~i~~-~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
..| . ...+ ++.+. .++++||+++||||++++.
T Consensus 155 ~~g--~-~a~~llltG~-~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 155 APG--A-LGTYLALTGA-RISAADALYAGLADHFVPS 187 (342)
T ss_pred ccc--H-HHHHHHHcCC-CCCHHHHHHcCCcceecCH
Confidence 001 0 1112 23444 5699999999999999874
No 121
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.40 E-value=5.4e-06 Score=72.97 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=86.1
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHH---HhhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-------~~~~I~~~I---~~~~~pV~t~v~g~aaSag~~I 114 (217)
|..+++.++...+-++.++.- .-+|+-.+||||..+. .+..+...+ .+...|+++++.|-|.|+|++.
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAla 210 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALG 210 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHh
Confidence 444455566665555443332 4688889999997642 234455544 3556899999999999999998
Q ss_pred HhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHc
Q 027911 115 LSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDY 194 (217)
Q Consensus 115 a~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~ 194 (217)
+..+|. ++|.++|.+.+-.|.+ ...+.. ++.+...+.. ...-+|+++-+++
T Consensus 211 l~~aD~--V~m~e~a~~sVisPEg------------~a~Il~--------------~d~~~a~~aA-~~~~ita~dL~~~ 261 (322)
T CHL00198 211 IGIGDS--IMMLEYAVYTVATPEA------------CAAILW--------------KDSKKSLDAA-EALKITSEDLKVL 261 (322)
T ss_pred hhcCCe--EEEeCCeEEEecCHHH------------HHHHHh--------------cchhhHHHHH-HHcCCCHHHHHhC
Confidence 888998 9999999998877721 111111 1111111222 2344699999999
Q ss_pred CCceeecCCC
Q 027911 195 GLIDGVVMNP 204 (217)
Q Consensus 195 GliD~I~~~~ 204 (217)
|+||+|+.-+
T Consensus 262 giiD~ii~Ep 271 (322)
T CHL00198 262 GIIDEIIPEP 271 (322)
T ss_pred CCCeEeccCC
Confidence 9999998744
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.40 E-value=3.9e-06 Score=79.08 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=87.4
Q ss_pred cCcchHHHHHHHHHHhh-hcCCCCceEEEEc-----CCCCcHHHH-------------------HHHHHHHHhhCCCcEE
Q 027911 47 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST 101 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~-~~~~~~~I~l~In-----SpGG~v~~~-------------------~~I~~~I~~~~~pV~t 101 (217)
++.++.+.+.+.|..++ .++..+.|+|.=. |.|+++... ..+.+.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 55667778888888877 5565666666532 567765431 1234456678899999
Q ss_pred EEecccccHHHHHHhcCCCCceeecCC--cceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Q 027911 102 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINED 179 (217)
Q Consensus 102 ~v~g~aaSag~~Ia~ag~~~~r~~~p~--s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 179 (217)
.+.|.|..+|.-++++||. |++.++ +.|.+-... ..|-.....- +.. + ...+........++
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~--~lGl~P~~gg----~~~----l----~~~~~vg~~~A~~l 188 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVP--LLGVLPGTGG----LTR----V----TDKRRVRRDHADIF 188 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchh--ccCcCCccch----hhh----c----cccchhCHHHHHHH
Confidence 9999999999999999999 999986 566542221 0121111110 000 0 00011122222333
Q ss_pred hCCCcccCHHHHHHcCCceeecCC
Q 027911 180 TDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 180 ~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+-....++++||+++||||++++.
T Consensus 189 lltG~~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 189 CTIEEGVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred HHcCCCccHHHHHHcCCceEEeCh
Confidence 322345699999999999999873
No 123
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.37 E-value=8.6e-06 Score=73.66 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=93.5
Q ss_pred EEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEE----cCCCCcHHHH----------H-------HHHHHHH
Q 027911 40 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------M-------AIFDTIR 93 (217)
Q Consensus 40 vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~I----nSpGG~v~~~----------~-------~I~~~I~ 93 (217)
+|+++-+ ++..+...+...+..++.++.++.|+|.= =|-||++..- . .+...|.
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 102 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIH 102 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 4677776 67778888888898888777666666531 1345655321 0 1123466
Q ss_pred hhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCH
Q 027911 94 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTL 173 (217)
Q Consensus 94 ~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~ 173 (217)
.+++||++.+.|.|..+|.-++++||. |++.+++.|.+-....+. ..+..... -+.+. ....+.
T Consensus 103 ~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl---~p~~g~~~-~L~rl----~g~~a~------ 166 (379)
T PLN02874 103 TYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGF---HTDCGFSY-ILSRL----PGHLGE------ 166 (379)
T ss_pred hCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCc---CCChhHHH-HHHhh----hHHHHH------
Confidence 788999999999999999999999999 999999988764443332 11221100 01111 010110
Q ss_pred HHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 174 EKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 174 ~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
.-++.+. .++++||+++||+|+++..
T Consensus 167 ---~l~ltG~-~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 167 ---YLALTGA-RLNGKEMVACGLATHFVPS 192 (379)
T ss_pred ---HHHHcCC-cccHHHHHHcCCccEEeCH
Confidence 1124554 5699999999999999873
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.24 E-value=2.2e-05 Score=74.06 Aligned_cols=139 Identities=14% Similarity=0.038 Sum_probs=86.5
Q ss_pred cCcchHHHHHHHHHHhhhc-CCCCceEEEEc-----CCCCcHH-----------HH----HHHHHHHHhhCCCcEEEE-e
Q 027911 47 VEDDMANIIVAQLLYLDAV-DPNKDIIMYLN-----SPGGSVT-----------AG----MAIFDTIRHIRPDVSTVC-V 104 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~-~~~~~I~l~In-----SpGG~v~-----------~~----~~I~~~I~~~~~pV~t~v-~ 104 (217)
++..+...+.+.+..++.+ +.+..|+|.=. |.|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 4556677787888777643 44555444321 2334431 10 124567778899999999 8
Q ss_pred cccccHH-HHHHhcCCCCceee-------cCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhc-CCCHHH
Q 027911 105 GLAASMG-AFLLSAGTKGKRYS-------LPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHT-GQTLEK 175 (217)
Q Consensus 105 g~aaSag-~~Ia~ag~~~~r~~-------~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~t-g~~~~~ 175 (217)
|.|..+| .=++++||- |++ .+++.|++-....+..-...-.. . +.++. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~-------~--------L~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGLS-------R--------LATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcHH-------H--------HHHHhcCchhHH
Confidence 9999999 999999999 999 89999876554433211110010 0 11222 332221
Q ss_pred HHh-hhCCCcccCHHHHHHcCCceeecCC
Q 027911 176 INE-DTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 176 i~~-~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
..+ ++.+ ..++++||+++||++++++.
T Consensus 438 ~~~~~ltg-~~i~A~eA~~~Glv~~vv~~ 465 (546)
T TIGR03222 438 AAVRDKIG-QALDAEEAERLGLVTAAPDD 465 (546)
T ss_pred HHHHHHhC-CCCCHHHHHHcCCcccccCc
Confidence 111 2344 45699999999999999764
No 125
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.23 E-value=1.7e-05 Score=76.04 Aligned_cols=132 Identities=19% Similarity=0.333 Sum_probs=89.0
Q ss_pred EEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-------HHHHHHHHHH---hhCCCcEEEEecccccHH
Q 027911 42 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMG 111 (217)
Q Consensus 42 ~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-------~~~~I~~~I~---~~~~pV~t~v~g~aaSag 111 (217)
+..|..++..++...+-+..+..- .-+|+-.+||||..+. .+..|...+. +...|+++++.|-|+|+|
T Consensus 218 rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGG 295 (762)
T PLN03229 218 RNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGG 295 (762)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 345556666666666555444332 4688999999998751 3445655555 445899999999999999
Q ss_pred HHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHH
Q 027911 112 AFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEA 191 (217)
Q Consensus 112 ~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA 191 (217)
++.+..||. ++|.|++.+.+..|.+ +..+.. ++.+...+ +....-+|+++-
T Consensus 296 AlA~g~aD~--VlMle~A~~sVisPEg------------aAsILw--------------kd~~~A~e-AAe~lkiTa~dL 346 (762)
T PLN03229 296 ALAIGCANK--LLMLENAVFYVASPEA------------CAAILW--------------KSAKAAPK-AAEKLRITAQEL 346 (762)
T ss_pred HHHhhcCCE--EEEecCCeEEecCHHH------------HHHHHh--------------cCcccHHH-HHHHcCCCHHHH
Confidence 999999998 9999999988777621 111111 01111111 222344699999
Q ss_pred HHcCCceeecCCC
Q 027911 192 KDYGLIDGVVMNP 204 (217)
Q Consensus 192 ~~~GliD~I~~~~ 204 (217)
+++|+||+|+.-+
T Consensus 347 ~~lGiiD~IIpEp 359 (762)
T PLN03229 347 CRLQIADGIIPEP 359 (762)
T ss_pred HhCCCCeeeccCC
Confidence 9999999998744
No 126
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.12 E-value=8.6e-05 Score=63.07 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=83.2
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCc----------HHHHHHHHHHHHhhC---CCcEEEEecccccHHHH
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAF 113 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~----------v~~~~~I~~~I~~~~---~pV~t~v~g~aaSag~~ 113 (217)
++..........+.....++..-+|+..+|+||=. ..+.-.+...+...+ .|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 44344445445554432222457999999999954 344444445555444 99999999999999988
Q ss_pred HHh-cCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCC--CcccCHHH
Q 027911 114 LLS-AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDR--DFFMSAEE 190 (217)
Q Consensus 114 Ia~-ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~--~~~lta~E 190 (217)
.+. .+|. .+|.|++.+....|.. ...+ +.++.++..+.... ..-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~------------aa~I--------------~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLES------------MARV--------------TKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHH------------HHHH--------------HccCHhHHHHHHHhhhhhccCHHH
Confidence 775 3777 9999999988766621 1111 11222333333221 23457889
Q ss_pred HHHcCCceeecCCCc
Q 027911 191 AKDYGLIDGVVMNPH 205 (217)
Q Consensus 191 A~~~GliD~I~~~~~ 205 (217)
+.++|+||+|++..+
T Consensus 177 ~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 177 FVKLGGVHALLDVAD 191 (238)
T ss_pred HHhCCCccEEeCCCC
Confidence 999999999988544
No 127
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.97 E-value=5.4e-05 Score=71.55 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=87.1
Q ss_pred cCcchHHHHHHHHHHhhh-cCCCCceEEEE-----cCCCCcHH-----------HH----HHHHHHHHhhCCCcEEEEe-
Q 027911 47 VEDDMANIIVAQLLYLDA-VDPNKDIIMYL-----NSPGGSVT-----------AG----MAIFDTIRHIRPDVSTVCV- 104 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~-~~~~~~I~l~I-----nSpGG~v~-----------~~----~~I~~~I~~~~~pV~t~v~- 104 (217)
++..+...+.+.+..++. ++.+..|+|.= =|-|+++. .. ..+...|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 455667777778877765 45555555532 13344521 00 1234566677899999997
Q ss_pred cccccHH-HHHHhcCCCCceeec-------CCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHh-cCCCHHH
Q 027911 105 GLAASMG-AFLLSAGTKGKRYSL-------PNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYH-TGQTLEK 175 (217)
Q Consensus 105 g~aaSag-~~Ia~ag~~~~r~~~-------p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~-tg~~~~~ 175 (217)
|.|..+| .-++++||. |++. +++.|++-....+..-...... . + .++ .|.....
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~-------~----L----~r~~vG~~~A~ 441 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLS-------R----L----ARRFYGEPDPL 441 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHH-------H----h----HHHhcChHHHH
Confidence 9999999 999999999 9999 9999886554433211100000 0 0 111 1222111
Q ss_pred HHh-hhCCCcccCHHHHHHcCCceeecCCCcccchH
Q 027911 176 INE-DTDRDFFMSAEEAKDYGLIDGVVMNPHKILQP 210 (217)
Q Consensus 176 i~~-~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~ 210 (217)
-.. ++.+ ..++++||+++|||+++++. ++.+.+
T Consensus 442 ~~~l~~tg-~~i~A~eA~~~GLv~~vv~~-~~l~~~ 475 (550)
T PRK08184 442 AAVRAKIG-QPLDADAAEELGLVTAAPDD-IDWEDE 475 (550)
T ss_pred HHHHHHhC-CcCCHHHHHHcCCcccccCh-HHHHHH
Confidence 111 1344 45699999999999999873 344333
No 128
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.94 E-value=0.00015 Score=62.78 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=92.2
Q ss_pred cccCcchHHHHHHHHHHhhhcC---CCCceEEEEcCCCCcHHHHH-------HHHHHHHhhC--CCcEEEEecc--cccH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVD---PNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--AASM 110 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~---~~~~I~l~InSpGG~v~~~~-------~I~~~I~~~~--~pV~t~v~g~--aaSa 110 (217)
|.+.....+++...++.+..++ ..-++++.++|.|+.+.++. .+...+..++ .|+++++.|. |+.+
T Consensus 73 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG 152 (274)
T TIGR03133 73 GSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGG 152 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchH
Confidence 3344445677777666554422 23489999999999876644 2333333333 7999999999 8899
Q ss_pred HHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHhhhCCCcccC
Q 027911 111 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQ---TLEKINEDTDRDFFMS 187 (217)
Q Consensus 111 g~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~---~~~~i~~~~~~~~~lt 187 (217)
++++++.||. ++|.|.+.+++..|.. + ...+|. +.++. .+. -..+.
T Consensus 153 ~a~~a~l~D~--vim~~~a~i~~aGP~V---------------I-----------e~~~G~e~~~~~d~-~l~--~~~lG 201 (274)
T TIGR03133 153 MGIAAGLCSY--LIMTEEGRLGLSGPEV---------------I-----------EQEAGVEEFDSRDR-ALV--WRTTG 201 (274)
T ss_pred HHHHHhcCCE--EEEeCCcEEeccCHHH---------------H-----------HHhcCCCccCHHHh-ccc--ccccc
Confidence 9999999999 9999999898877621 0 011221 11110 000 01234
Q ss_pred HHHHHHcCCceeecCCCcccchHHHHhc
Q 027911 188 AEEAKDYGLIDGVVMNPHKILQPVAAAA 215 (217)
Q Consensus 188 a~EA~~~GliD~I~~~~~~~l~~~~~~~ 215 (217)
++.....|++|.+++++.++|++.+.++
T Consensus 202 G~~~~~sG~~D~~v~dd~~a~~~~~~~~ 229 (274)
T TIGR03133 202 GKHRFLSGDADVLVEDDVDAFRAAVIAA 229 (274)
T ss_pred hHhHhhcccceEEeCCHHHHHHHHHHHH
Confidence 5567779999999999999999888765
No 129
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.71 E-value=5.3e-05 Score=63.51 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 027911 84 AGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNG 163 (217)
Q Consensus 84 ~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~ 163 (217)
..+.-+..|.++++||++-+-|.|-.+|.=+..+||. ||+...+.|-+-..-.+ -..|+.. +.+ +-.
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvg---laADvGT----L~R----lpk 180 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVG---LAADVGT----LNR----LPK 180 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeee---hhhchhh----Hhh----hhH
Confidence 3444567788889999999999999999999999999 99999999987665333 2233321 111 212
Q ss_pred HHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCCcccchHHHH
Q 027911 164 YLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNPHKILQPVAA 213 (217)
Q Consensus 164 ~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~~~~l~~~~~ 213 (217)
++ | +...+.++.-..+-|++.||++.||+-+|.++.++.|....+
T Consensus 181 vV----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~ 225 (292)
T KOG1681|consen 181 VV----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALP 225 (292)
T ss_pred Hh----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHH
Confidence 21 1 112233333334567999999999999999988887765543
No 130
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.66 E-value=0.00043 Score=65.02 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=68.1
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCC----------cHHHHHHHHHHHHhhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG----------~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~I 114 (217)
|.+++..++...+-++.... ..-+|+..+||||= .+..+-.+...+.....|.++++.|.++++|++.
T Consensus 329 G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~a 406 (512)
T TIGR01117 329 GCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLA 406 (512)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHH
Confidence 55677778887777765443 35789999999995 3455555666666677999999999999998777
Q ss_pred Hhc----CCCCceeecCCcceeeecCC
Q 027911 115 LSA----GTKGKRYSLPNSRIMIHQPL 137 (217)
Q Consensus 115 a~a----g~~~~r~~~p~s~i~ih~~~ 137 (217)
+++ +|. .++.|++.+++..|.
T Consensus 407 m~~~~~~~d~--~~a~p~a~~~v~~pe 431 (512)
T TIGR01117 407 MCSKHLGADQ--VYAWPTAEIAVMGPA 431 (512)
T ss_pred hccccCCCCE--EEEcCCCeEeecCHH
Confidence 764 666 899999999988774
No 131
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.39 E-value=0.00045 Score=59.75 Aligned_cols=108 Identities=24% Similarity=0.419 Sum_probs=75.1
Q ss_pred CCceEEEEcCCCCcH-------HHHHHHHHHHHh---hCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCC
Q 027911 68 NKDIIMYLNSPGGSV-------TAGMAIFDTIRH---IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 137 (217)
Q Consensus 68 ~~~I~l~InSpGG~v-------~~~~~I~~~I~~---~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~ 137 (217)
.-+|+.+||+||-.. ..+.+|...+.. ++.|++++|.|-..|+|.+-...||+ .+|..||++.+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 468999999999542 356667665555 46899999999999999999999999 899999998887773
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCCC
Q 027911 138 GGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMNP 204 (217)
Q Consensus 138 ~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~~ 204 (217)
+- .+=+ +++-.+ ..+.. + ..-+|+.+-+++||||.|+.-+
T Consensus 228 G~----AsIL---WkD~~k---------------a~eAA-e----~mkita~dLk~lgiID~II~Ep 267 (317)
T COG0825 228 GC----ASIL---WKDASK---------------AKEAA-E----AMKITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred hh----hhhh---hcChhh---------------hHHHH-H----HcCCCHHHHHhCCCcceeccCC
Confidence 21 1111 111111 11111 1 1224788899999999998743
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.30 E-value=0.0014 Score=61.25 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=65.9
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~I 114 (217)
|.++.+.++...+-+...+.. .=+|+..+|+|| |.+..+-.+.+++-.++.|+++++.+.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 667777777777666655543 348899999999 66788899999999999999999999999998887
Q ss_pred HhcC----CCCceeecCCcceeeecC
Q 027911 115 LSAG----TKGKRYSLPNSRIMIHQP 136 (217)
Q Consensus 115 a~ag----~~~~r~~~p~s~i~ih~~ 136 (217)
+++. +. .++.|++.+.+..|
T Consensus 386 m~~~~~~~~~--~~Awp~a~~~vm~~ 409 (493)
T PF01039_consen 386 MCGRGYGPDF--VFAWPTAEIGVMGP 409 (493)
T ss_dssp TTGGGGTTSE--EEEETT-EEESS-H
T ss_pred hcccccchhh--hhhhhcceeeecCh
Confidence 7776 44 78899999887766
No 133
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.26 E-value=0.0065 Score=57.77 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=66.3
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCC----------cHHHHHHHHHHHHhhCCCcEEEEecccccHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG----------~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~ 113 (217)
+|.++.+.++...+-++..+. -.=+|+..+|+||- .+..+-.+..++.....|.++++.|.+..+|++
T Consensus 379 ~g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~ 456 (569)
T PLN02820 379 NGILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNY 456 (569)
T ss_pred CCccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHH
Confidence 355777777776655554443 34688889999994 445556666777777899999999999999999
Q ss_pred HHhc----CCCCceeecCCcceeeecC
Q 027911 114 LLSA----GTKGKRYSLPNSRIMIHQP 136 (217)
Q Consensus 114 Ia~a----g~~~~r~~~p~s~i~ih~~ 136 (217)
.+++ .|. .++.|++.+.+..|
T Consensus 457 aM~g~~~~~d~--~~awp~A~i~vmg~ 481 (569)
T PLN02820 457 GMCGRAYSPNF--LFMWPNARIGVMGG 481 (569)
T ss_pred HhcCcCCCCCE--EEECCCCeEEecCH
Confidence 8873 444 78899999887666
No 134
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=97.24 E-value=0.0016 Score=54.41 Aligned_cols=136 Identities=23% Similarity=0.190 Sum_probs=92.4
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC-------Cc----------H-------HHHHHHHHHHHhhCCCcEEE
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GS----------V-------TAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG-------G~----------v-------~~~~~I~~~I~~~~~pV~t~ 102 (217)
-.+.+...++..+..++.++++.-|+|.=|+-| |+ + -..+.+-.+||..++||++.
T Consensus 43 frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~ 122 (282)
T COG0447 43 FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAM 122 (282)
T ss_pred CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEE
Confidence 355678888899988887777766666644322 22 1 23455667899999999999
Q ss_pred EecccccHHHHHHhcCCCCceeecCCcceeeecCCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhC
Q 027911 103 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ-GGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTD 181 (217)
Q Consensus 103 v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~~-G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 181 (217)
|.|.|..+|-.+-+-||- -+++.++.|+-..|..++. |-... ..+.+++ |. ++..++.-
T Consensus 123 V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs------------~ylar~V----Gq--KkArEIwf 182 (282)
T COG0447 123 VAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGS------------SYLARIV----GQ--KKAREIWF 182 (282)
T ss_pred EeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccH------------HHHHHHh----hh--hhhHHhhh
Confidence 999999999999999998 7899999998877765432 11110 0111111 11 11222222
Q ss_pred CCcccCHHHHHHcCCceeecC
Q 027911 182 RDFFMSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 182 ~~~~lta~EA~~~GliD~I~~ 202 (217)
=-+.++++||++.|++..|+.
T Consensus 183 LcR~Y~A~eal~MGlVN~Vvp 203 (282)
T COG0447 183 LCRQYDAEEALDMGLVNTVVP 203 (282)
T ss_pred hhhhccHHHHHhcCceeeecc
Confidence 234569999999999999986
No 135
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.14 E-value=0.0013 Score=54.81 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEcCCCC-----c---------------HHHHHHHHHHHHhhCCCcEEEEecccccHH
Q 027911 52 ANIIVAQLLYLDAVDPNKDIIMYLNSPGG-----S---------------VTAGMAIFDTIRHIRPDVSTVCVGLAASMG 111 (217)
Q Consensus 52 ~~~l~~~L~~l~~~~~~~~I~l~InSpGG-----~---------------v~~~~~I~~~I~~~~~pV~t~v~g~aaSag 111 (217)
.+.|...|+.+..++++.-+.|+=-+||= + |..-..+.+.|.+++.||++-++|.|-.+|
T Consensus 60 ~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGG 139 (291)
T KOG1679|consen 60 VKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGG 139 (291)
T ss_pred HHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccc
Confidence 45566667777888777777777777872 1 344455677778888999999999999999
Q ss_pred HHHHhcCCCCceeecCCcceeeecCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCH
Q 027911 112 AFLLSAGTKGKRYSLPNSRIMIHQPLGG---AQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSA 188 (217)
Q Consensus 112 ~~Ia~ag~~~~r~~~p~s~i~ih~~~~~---~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta 188 (217)
.=++++||. |.+..++.+++-..... ..|-.+.+ .+ .+ | ....++++...+.+++
T Consensus 140 LElALACDi--Rva~s~akmGLvET~laiiPGaGGtQRL-------pR---~v--------g--~alaKELIftarvl~g 197 (291)
T KOG1679|consen 140 LELALACDI--RVAASSAKMGLVETKLAIIPGAGGTQRL-------PR---IV--------G--VALAKELIFTARVLNG 197 (291)
T ss_pred hhhhhhccc--eehhhhccccccccceeeecCCCccchh-------HH---HH--------h--HHHHHhHhhhheeccc
Confidence 999999999 99999999887544221 11111111 11 11 1 1122344545567799
Q ss_pred HHHHHcCCceeecCC
Q 027911 189 EEAKDYGLIDGVVMN 203 (217)
Q Consensus 189 ~EA~~~GliD~I~~~ 203 (217)
.||.++|++..+++.
T Consensus 198 ~eA~~lGlVnhvv~q 212 (291)
T KOG1679|consen 198 AEAAKLGLVNHVVEQ 212 (291)
T ss_pred hhHHhcchHHHHHhc
Confidence 999999999998763
No 136
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.11 E-value=0.0081 Score=52.59 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=62.8
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHH-------HHHHH---HhhCCCcEEEEecccccHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTI---RHIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~-------I~~~I---~~~~~pV~t~v~g~aaSag~~ 113 (217)
.|.++....+.+.+.++.+... .-+++...+|+|....++.. +...+ .....|.++++.|.+..++++
T Consensus 134 gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aa 211 (292)
T PRK05654 134 GGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSA 211 (292)
T ss_pred cCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHH
Confidence 4445555678887777655443 35788888999987666542 22233 233589999999999888776
Q ss_pred H-HhcCCCCceeecCCcceeeecC
Q 027911 114 L-LSAGTKGKRYSLPNSRIMIHQP 136 (217)
Q Consensus 114 I-a~ag~~~~r~~~p~s~i~ih~~ 136 (217)
. ++.+|. ++|.|++.+++..|
T Consensus 212 s~a~~~D~--iia~p~A~ig~aGp 233 (292)
T PRK05654 212 SFAMLGDI--IIAEPKALIGFAGP 233 (292)
T ss_pred HHHHcCCE--EEEecCcEEEecCH
Confidence 5 445887 89999999998777
No 137
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.99 E-value=0.0081 Score=52.40 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=81.0
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHH-------HHH---HHhhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDT---IRHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I-------~~~---I~~~~~pV~t~v~g~aaSag~~I 114 (217)
|.++....+.+.+.++.+... .-+++...+|+|....++... ... +.....|.++++.|-+..++++.
T Consensus 134 GSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas 211 (285)
T TIGR00515 134 GSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSAS 211 (285)
T ss_pred CCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHH
Confidence 444555677887777654433 458888999999876555422 112 22335899999999999887776
Q ss_pred H-hcCCCCceeecCCcceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcccCHHHHHH
Q 027911 115 L-SAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 193 (217)
Q Consensus 115 a-~ag~~~~r~~~p~s~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~ 193 (217)
+ +.+|. ++|.|++.+++..|. ++ .+.++ +....+ +-+++-+.+
T Consensus 212 ~a~~~D~--iia~p~A~ig~aGpr----------------------Vi----e~ti~-------e~lpe~-~q~ae~~~~ 255 (285)
T TIGR00515 212 FAMLGDL--NIAEPKALIGFAGPR----------------------VI----EQTVR-------EKLPEG-FQTSEFLLE 255 (285)
T ss_pred HHhCCCE--EEEECCeEEEcCCHH----------------------HH----HHHhc-------Cccchh-cCCHHHHHh
Confidence 5 58888 999999999987762 01 11112 111122 337777889
Q ss_pred cCCceeecCCC
Q 027911 194 YGLIDGVVMNP 204 (217)
Q Consensus 194 ~GliD~I~~~~ 204 (217)
.|+||.|++..
T Consensus 256 ~G~vD~iv~~~ 266 (285)
T TIGR00515 256 HGAIDMIVHRP 266 (285)
T ss_pred CCCCcEEECcH
Confidence 99999998743
No 138
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=96.85 E-value=0.0063 Score=53.41 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=64.2
Q ss_pred cccCcchHHHHHHHHHHhhhcC---CCCceEEEEcCCCCcHHHHH-------HHHHHHHhhC--CCcEEEEecc--cccH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVD---PNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--AASM 110 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~---~~~~I~l~InSpGG~v~~~~-------~I~~~I~~~~--~pV~t~v~g~--aaSa 110 (217)
|.+.....+++...++.+.... ..-++++.++|.|+.+.++. .+...+..++ .|+++++.|. |+.+
T Consensus 82 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG 161 (301)
T PRK07189 82 GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGG 161 (301)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHH
Confidence 3334445677766665543321 12689999999998875433 2333333333 7999999998 9999
Q ss_pred HHHHHhcCCCCceeecCCcceeeecC
Q 027911 111 GAFLLSAGTKGKRYSLPNSRIMIHQP 136 (217)
Q Consensus 111 g~~Ia~ag~~~~r~~~p~s~i~ih~~ 136 (217)
+.+.+..||. ++|.+++.+++..|
T Consensus 162 ~a~~a~l~D~--iIm~~~a~iglaGP 185 (301)
T PRK07189 162 MGIAAALCSY--LIVSEEGRLGLSGP 185 (301)
T ss_pred HHHHHhcCCE--EEEECCcEEeccCH
Confidence 9999999999 99999999888766
No 139
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.26 E-value=0.1 Score=44.21 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=73.2
Q ss_pred hcCCCCceEEEEcCCCC---cHHHHHHH----------HHHHHhhCCCcEEEEecccccHHHHH-HhcCCCCceeecCCc
Q 027911 64 AVDPNKDIIMYLNSPGG---SVTAGMAI----------FDTIRHIRPDVSTVCVGLAASMGAFL-LSAGTKGKRYSLPNS 129 (217)
Q Consensus 64 ~~~~~~~I~l~InSpGG---~v~~~~~I----------~~~I~~~~~pV~t~v~g~aaSag~~I-a~ag~~~~r~~~p~s 129 (217)
.+.+..+|++.+++||- .-++.+-| |+.-|..+.||++.+.|.|.|+|.+- .+.++. .++.|++
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~ga 137 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALPGA 137 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCCCC
Confidence 44568899999999993 33444433 55555666899999999999999652 234566 8999954
Q ss_pred ceeeecCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhCCCcc--cCHHHHHHcCCceeecC
Q 027911 130 RIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFF--MSAEEAKDYGLIDGVVM 202 (217)
Q Consensus 130 ~i~ih~~~~~~~G~~~~~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~--lta~EA~~~GliD~I~~ 202 (217)
. +|-.. .. . .++-|.+|.++++++....-. +..+-=.++|.++++.+
T Consensus 138 ~--i~vM~-----------~~---------s----~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 138 M--IHVMG-----------KP---------S----AARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred e--eecCC-----------hH---------H----hHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 3 34321 00 1 244467788888777544322 35566678888888876
No 140
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=95.48 E-value=0.013 Score=48.72 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCCC-CCCcchHHHHHHHHHHHHHHHHHHH
Q 027911 87 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA-QGGQSDIDLQANEMLHHKANLNGYL 165 (217)
Q Consensus 87 ~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~~-~G~~~~~~~~~~~l~~~~~~~~~~~ 165 (217)
.+.+-||+++.||++-|.|+|+-+|.-+..+||. .++.++|.|..-....+. -.++ .+. +.+
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTP-GvA-----laR--------- 178 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTP-GVA-----LAR--------- 178 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCc-chh-----Hhh---------
Confidence 4577889999999999999999999999999998 788888877532221111 1111 111 111
Q ss_pred HHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 166 SYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 166 a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
-.+.+....+.-....+|++||+-.|++.++++.
T Consensus 179 ----avpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~ 212 (287)
T KOG1682|consen 179 ----AVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA 212 (287)
T ss_pred ----hcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH
Confidence 1222222222222345699999999999999874
No 141
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.19 E-value=0.13 Score=49.08 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH---H-------HHHHHHH-HHhh--CCCcEEEEecccccH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT---A-------GMAIFDT-IRHI--RPDVSTVCVGLAASM 110 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~---~-------~~~I~~~-I~~~--~~pV~t~v~g~aaSa 110 (217)
.|.++....+.+.+.++.+... .-+++..++|+|+.+. . .-.+... .+.+ ..|.++++.|.|+++
T Consensus 142 GGs~g~~~~~Ki~r~~elA~~~--~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gG 219 (569)
T PLN02820 142 GGTYYPITVKKHLRAQEIAAQC--RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAG 219 (569)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChH
Confidence 5666666778887766554433 4589999999998761 1 1123333 3323 479999999999999
Q ss_pred HHHHHhcCCCCceeec-CCcceeeecC
Q 027911 111 GAFLLSAGTKGKRYSL-PNSRIMIHQP 136 (217)
Q Consensus 111 g~~Ia~ag~~~~r~~~-p~s~i~ih~~ 136 (217)
++++...+|. .+|. +++.+++..|
T Consensus 220 gAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 220 GAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHhCCc--eEEecCCcEEEecCH
Confidence 9999888887 5555 5687777666
No 142
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.62 E-value=0.15 Score=47.88 Aligned_cols=91 Identities=19% Similarity=0.304 Sum_probs=65.2
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCcEEEEecccccHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~ 113 (217)
.|.|+.+.+..-.+-++ +-.. ..=+|+...|.|| |-+--+-.|..++-++..|.+|++.+.+..+|++
T Consensus 337 ~G~l~~~sa~KaArFI~-~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKAARFIR-LCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHHHHHHH-hhhc-cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 56777777666544443 3322 2458889999999 6678888889999999999999999999998888
Q ss_pred HHhcCCC--CceeecCCcceeeecC
Q 027911 114 LLSAGTK--GKRYSLPNSRIMIHQP 136 (217)
Q Consensus 114 Ia~ag~~--~~r~~~p~s~i~ih~~ 136 (217)
.+++..- ...++-|++.+....|
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~ 439 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGP 439 (526)
T ss_pred eecCccCCCceeEecCcceeeecCH
Confidence 7775322 1256666666665544
No 143
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=94.50 E-value=0.18 Score=44.16 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=60.2
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHH----H---HHHHHH----hhCCCcEEEEecccccHHHHHH
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM----A---IFDTIR----HIRPDVSTVCVGLAASMGAFLL 115 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~----~---I~~~I~----~~~~pV~t~v~g~aaSag~~Ia 115 (217)
+.....+.+.+.++.+... .-++++..+|.|+...++. . +..++. +-..|.++++.|-++.++++.+
T Consensus 149 mG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~ 226 (296)
T CHL00174 149 MGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASF 226 (296)
T ss_pred cCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHH
Confidence 3334567777766654432 3688899999998765544 1 111122 3347999999999988888875
Q ss_pred h-cCCCCceeecCCcceeeecC
Q 027911 116 S-AGTKGKRYSLPNSRIMIHQP 136 (217)
Q Consensus 116 ~-ag~~~~r~~~p~s~i~ih~~ 136 (217)
. .||. +++.|++.+++..|
T Consensus 227 a~l~Di--iiae~~A~IgfAGP 246 (296)
T CHL00174 227 GMLGDI--IIAEPNAYIAFAGK 246 (296)
T ss_pred HHcccE--EEEeCCeEEEeeCH
Confidence 5 5998 88999999998877
No 144
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=93.92 E-value=0.46 Score=40.72 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=58.7
Q ss_pred HHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcceeeecCCCC----CCCCcchHHHHHHHHHHHHHHHHH
Q 027911 88 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG----AQGGQSDIDLQANEMLHHKANLNG 163 (217)
Q Consensus 88 I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i~ih~~~~~----~~G~~~~~~~~~~~l~~~~~~~~~ 163 (217)
..+..-.+++|+++.+.|-|-.-|..|.--||. .++...+. +|.|+.. ..|-.+=.. -
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~Dka~--F~TPfa~lGq~PEG~Ss~t~---------p----- 160 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASDKAW--FQTPFAKLGQSPEGCSSVTL---------P----- 160 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEeccceE--EeccchhcCCCCCcceeeee---------h-----
Confidence 456677788999999999999999999888998 78875554 4556432 122111000 0
Q ss_pred HHHHhcCCCHHHHHhhhCCCcccCHHHHHHcCCceeecCC
Q 027911 164 YLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVVMN 203 (217)
Q Consensus 164 ~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~I~~~ 203 (217)
+..|. ....+++=-..-|+++||.+.|||++|...
T Consensus 161 ---~imG~--~~A~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 161 ---KIMGS--ASANEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred ---Hhhch--hhHHHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 00111 111222212235689999999999999764
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=93.70 E-value=0.43 Score=45.06 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=62.7
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHH-------HHH-HHHHh-hCCCcEEEEecccccHHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM-------AIF-DTIRH-IRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~-------~I~-~~I~~-~~~pV~t~v~g~aaSag~~I 114 (217)
.|.+.....+.+...++.+..+ .-+++..++|.|+.+..+. .++ ...+. -..|.++++.|-|..++++.
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~--~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~ 172 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKM--GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYS 172 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHH
Confidence 4445555677877766654443 3589999999998864432 122 22222 24799999999999999999
Q ss_pred HhcCCCCceeecCCc-ceeeecC
Q 027911 115 LSAGTKGKRYSLPNS-RIMIHQP 136 (217)
Q Consensus 115 a~ag~~~~r~~~p~s-~i~ih~~ 136 (217)
+..||. ++|.+++ .+++..|
T Consensus 173 ~al~D~--vim~~~~a~i~~aGP 193 (512)
T TIGR01117 173 PALTDF--IYMVDNTSQMFITGP 193 (512)
T ss_pred HHhcCc--eEEeccceEEEecCh
Confidence 999999 9999975 5776655
No 146
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=92.67 E-value=0.2 Score=39.87 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=32.4
Q ss_pred EEEEccccCcchHHHHHHHHHH-hhhcCCCCceEEEEcCCCCcHH
Q 027911 40 IIRCGGPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVT 83 (217)
Q Consensus 40 vI~i~G~I~~~~~~~l~~~L~~-l~~~~~~~~I~l~InSpGG~v~ 83 (217)
|+-++|-|..+..+.+.+.+-. +.-..+.+.|+|++-||||.|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 5668999999887766655432 2333446899999999999874
No 147
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=91.84 E-value=0.55 Score=42.19 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=66.6
Q ss_pred CcEEEEccc-----cCcchHHHHHHHHHHhhhcCCCCceEEEEc-----CCCCcHHHHH-------------------HH
Q 027911 38 HRIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM-------------------AI 88 (217)
Q Consensus 38 ~~vI~i~G~-----I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-----SpGG~v~~~~-------------------~I 88 (217)
.++|+++-| ++-++...+...|..++.++.++.|++.=+ |-||++.+.- .+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 467777766 677788888889988898877776666544 4578854322 22
Q ss_pred HHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcc
Q 027911 89 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSR 130 (217)
Q Consensus 89 ~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~ 130 (217)
...|-.+.+|+++.++|+-+.+|.=+...|.- |++...+.
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~ 167 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTV 167 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeeccee--EEeeccce
Confidence 34555667999999999999999999998876 66665554
No 148
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=91.80 E-value=0.47 Score=44.54 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=60.9
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCC--cHHHHH-------HHHHHHHhh--CCCcEEEEecccccHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--SVTAGM-------AIFDTIRHI--RPDVSTVCVGLAASMGA 112 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG--~v~~~~-------~I~~~I~~~--~~pV~t~v~g~aaSag~ 112 (217)
.|.+.....+.+.+.++.+... .-+++..++|.|+ ....+. .+...+..+ ..|+++++.|.|..+++
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~--~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A 147 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALEN--GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGA 147 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHH--TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGG
T ss_pred cCCCCcccceeeehHHHHHHHc--CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchh
Confidence 3444555677777766654443 4567888999999 322221 222222222 47999999999999999
Q ss_pred HHHhcCCCCceeecCC-cceeeecCC
Q 027911 113 FLLSAGTKGKRYSLPN-SRIMIHQPL 137 (217)
Q Consensus 113 ~Ia~ag~~~~r~~~p~-s~i~ih~~~ 137 (217)
+.+..+|. .+|.+. +.+++..|.
T Consensus 148 ~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 148 YLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp HHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hcccccCc--cccCccceEEEecccc
Confidence 98998998 888887 888887663
No 149
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=90.87 E-value=1.8 Score=35.72 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=56.9
Q ss_pred EEEccccCcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------------------
Q 027911 41 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------------- 94 (217)
Q Consensus 41 I~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~------------------------- 94 (217)
|.+..-..+...+.+.+.+..+.. +.+.++|.+ +-|||.+..+..+.+.+..
T Consensus 64 i~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (224)
T cd06567 64 IRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGS 141 (224)
T ss_pred EEECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCc
Confidence 334443335556666666766554 578888864 5689999999999888764
Q ss_pred -hCCCcEEEEecccccHHHHHHhcCCC
Q 027911 95 -IRPDVSTVCVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 95 -~~~pV~t~v~g~aaSag~~Ia~ag~~ 120 (217)
...||++.+.+..+|+|-+++.+-+.
T Consensus 142 ~~~~pv~vL~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 142 LYDGPLVVLVNEGSASASEIFAGALQD 168 (224)
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHHh
Confidence 13589999999999999998887443
No 150
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=86.42 E-value=4.6 Score=35.72 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=55.2
Q ss_pred CcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh------------------------hCCCcEEE
Q 027911 48 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------------IRPDVSTV 102 (217)
Q Consensus 48 ~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~------------------------~~~pV~t~ 102 (217)
+....+.+.+.+..++.. +.+.++|.+ +-|||.+..+..+...+.. ...||++.
T Consensus 162 ~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vL 240 (334)
T TIGR00225 162 SEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVL 240 (334)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEE
Confidence 445567777778776653 478888864 6799999999999887632 23589999
Q ss_pred EecccccHHHHHHhcCCC
Q 027911 103 CVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 103 v~g~aaSag~~Ia~ag~~ 120 (217)
+.+..+|+|-+++.+-..
T Consensus 241 vn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 241 VNRGSASASEIFAGALQD 258 (334)
T ss_pred ECCCCCcHHHHHHHHHHh
Confidence 999999999999887544
No 151
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=82.60 E-value=6.1 Score=35.89 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh--------------------------hCCCcE
Q 027911 48 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH--------------------------IRPDVS 100 (217)
Q Consensus 48 ~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~--------------------------~~~pV~ 100 (217)
+..+.+.+.+.|..+... ..+.++|.+ +-|||.+.++..|.+.+.. ...|++
T Consensus 205 ~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvv 283 (389)
T PLN00049 205 NQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPLA 283 (389)
T ss_pred cchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCEE
Confidence 344567777888777654 478888864 6689999999999887721 125899
Q ss_pred EEEecccccHHHHHHhcC
Q 027911 101 TVCVGLAASMGAFLLSAG 118 (217)
Q Consensus 101 t~v~g~aaSag~~Ia~ag 118 (217)
+.+.+..||++=+++.+=
T Consensus 284 VLvn~~TaSasEi~a~al 301 (389)
T PLN00049 284 VLVNKGTASASEILAGAL 301 (389)
T ss_pred EEECCCCccHHHHHHHHH
Confidence 999999999999988863
No 152
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=82.22 E-value=11 Score=31.27 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=53.4
Q ss_pred CcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh------------------------hCCCcEEE
Q 027911 48 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------------IRPDVSTV 102 (217)
Q Consensus 48 ~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~------------------------~~~pV~t~ 102 (217)
+....+.+.+.|..+...+ .+.++|.+ +.+||++..+..+...+.. ..+||++.
T Consensus 59 ~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvVL 137 (211)
T cd07560 59 SENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVVL 137 (211)
T ss_pred CchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEEE
Confidence 4455677777777766543 77888764 5679999998888775542 24689999
Q ss_pred EecccccHHHHHHhcCCC
Q 027911 103 CVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 103 v~g~aaSag~~Ia~ag~~ 120 (217)
+.+..+|+|-+++.+-+.
T Consensus 138 vn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 138 VNGGSASASEIVAGALQD 155 (211)
T ss_pred eCCCcccHHHHHHHHHhh
Confidence 999999999998887544
No 153
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=82.13 E-value=7.5 Score=33.26 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHhh---C----------------------------
Q 027911 49 DDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHI---R---------------------------- 96 (217)
Q Consensus 49 ~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~~---~---------------------------- 96 (217)
..+.+.+.+.+..+++. ..+.++|.+ +-|||.+..+..|.+.+..- .
T Consensus 76 ~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T cd07561 76 SGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANNEDLLFSSKTLAG 154 (256)
T ss_pred cchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCCceeecccccccc
Confidence 34567788888877764 478888864 66999999999998877651 0
Q ss_pred ------CCcEEEEecccccHHHHHHhcCC
Q 027911 97 ------PDVSTVCVGLAASMGAFLLSAGT 119 (217)
Q Consensus 97 ------~pV~t~v~g~aaSag~~Ia~ag~ 119 (217)
.||++.+.+..||+|=+++.+=+
T Consensus 155 ~~~~~~~pv~VL~~~~TASAaE~~a~~Lk 183 (256)
T cd07561 155 GNSLNLSKVYVLTSGSTASASELVINSLK 183 (256)
T ss_pred cCcCCcccEEEEECCCcccHHHHHHHHhh
Confidence 36788888888888888777643
No 154
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=82.13 E-value=5.5 Score=36.52 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=56.5
Q ss_pred CcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------------------hCCCcEE
Q 027911 48 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVST 101 (217)
Q Consensus 48 ~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~-------------------------~~~pV~t 101 (217)
+..+.+.+...|..+++++ .++++|.+ |-|||.+.++..+.++... ...|+++
T Consensus 214 ~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plvv 292 (406)
T COG0793 214 GEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVV 292 (406)
T ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEE
Confidence 3345666777887888765 89999976 6699999999999888772 1268999
Q ss_pred EEecccccHHHHHHhcCC
Q 027911 102 VCVGLAASMGAFLLSAGT 119 (217)
Q Consensus 102 ~v~g~aaSag~~Ia~ag~ 119 (217)
.+++..||++=+.+-+-.
T Consensus 293 Lvn~~SASAsEI~agalq 310 (406)
T COG0793 293 LVNEGSASASEIFAGALQ 310 (406)
T ss_pred EECCCCccHHHHHHHHHH
Confidence 999999999998887744
No 155
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=81.98 E-value=4.2 Score=38.47 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=61.9
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHH--------HHHHHHHHHhhC-CCcEEEEecccccHHHHH
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA--------GMAIFDTIRHIR-PDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~--------~~~I~~~I~~~~-~pV~t~v~g~aaSag~~I 114 (217)
.|...+-..+.+.+..+.+.. . ..+++...+|-|+.+.. +...++..+.+. .|.++++.|.|+-+|.|+
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~~-~-g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~ 181 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAIE-N-GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYS 181 (526)
T ss_pred cccccccccchHHHHHHHHHH-c-CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCccccccc
Confidence 444444455666655443332 2 46777778888876533 455566666554 799999999999999999
Q ss_pred HhcCCCCceeecCC-cceeeecC
Q 027911 115 LSAGTKGKRYSLPN-SRIMIHQP 136 (217)
Q Consensus 115 a~ag~~~~r~~~p~-s~i~ih~~ 136 (217)
..-+|. .+|.++ +.+.+-.|
T Consensus 182 pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 182 PALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred ccccce--EEEEcCCccEEeeCH
Confidence 999999 899988 65655544
No 156
>PRK11186 carboxy-terminal protease; Provisional
Probab=81.44 E-value=6.3 Score=38.53 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-------------------------hCCCcEEEE
Q 027911 50 DMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVSTVC 103 (217)
Q Consensus 50 ~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~-------------------------~~~pV~t~v 103 (217)
...+.+.+.|..+... +.++++|.+ |-|||.+..+..|...+-. ...|+++.+
T Consensus 366 ~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLV 444 (667)
T PRK11186 366 GLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLV 444 (667)
T ss_pred chHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEe
Confidence 3466777777777654 588999875 6799999999999887531 124899999
Q ss_pred ecccccHHHHHHhc
Q 027911 104 VGLAASMGAFLLSA 117 (217)
Q Consensus 104 ~g~aaSag~~Ia~a 117 (217)
++..||++-+++.+
T Consensus 445 N~~SASASEIfA~a 458 (667)
T PRK11186 445 DRYSASASEIFAAA 458 (667)
T ss_pred CCCCccHHHHHHHH
Confidence 99999999998887
No 157
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=80.74 E-value=4.6 Score=35.56 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=51.4
Q ss_pred cEEEEccc--cCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccc
Q 027911 39 RIIRCGGP--VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 108 (217)
Q Consensus 39 ~vI~i~G~--I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aa 108 (217)
++|.+... .+-+ +.+-|+++..|+.++.|.|++-+-|-.+..+..+.+..++ ++||+++..|..+
T Consensus 179 ~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 45666666 4433 4566777888999999999999988888888888877554 7999999998886
No 158
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=78.14 E-value=7.1 Score=34.65 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=47.9
Q ss_pred CcEEEEcccc-CcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccc
Q 027911 38 HRIIRCGGPV-EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 108 (217)
Q Consensus 38 ~~vI~i~G~I-~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aa 108 (217)
..+|.+.+.- .+- .+.+-|+++.+|+.++.|.+++-.-|-.-..+....+. ...++||+++..|..+
T Consensus 197 S~~VsiGnd~~~g~---~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 197 STCVGIGGDPFNGT---NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEEeCCCCCCCC---CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 3456676663 222 25567777888899999999999887776666555554 2346999999998876
No 159
>smart00245 TSPc tail specific protease. tail specific protease
Probab=78.04 E-value=13 Score=30.01 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=53.6
Q ss_pred cCcchHHHHHHHHHHhhhcCCCCceEEEEcC-CCCcHHHHHHHHHHHHhh-------------------------CCCcE
Q 027911 47 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHI-------------------------RPDVS 100 (217)
Q Consensus 47 I~~~~~~~l~~~L~~l~~~~~~~~I~l~InS-pGG~v~~~~~I~~~I~~~-------------------------~~pV~ 100 (217)
.+..+.+.+.+.+..+... +.+.++|.+-. +||.+..+..+.+.+... .+||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 3444556677777777654 47888887754 899999999888877321 14788
Q ss_pred EEEecccccHHHHHHhcCCC
Q 027911 101 TVCVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 101 t~v~g~aaSag~~Ia~ag~~ 120 (217)
+.+.+..+|+|-+++.+-+.
T Consensus 117 vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 117 VLVNEGTASASEIFAGALKD 136 (192)
T ss_pred EEECCCCeeHHHHHHHHHhh
Confidence 88999999999988887544
No 160
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=77.39 E-value=12 Score=28.83 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh-----------------------------hCCCc
Q 027911 50 DMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-----------------------------IRPDV 99 (217)
Q Consensus 50 ~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~-----------------------------~~~pV 99 (217)
...+.+.+.+.++.. .+.+.++|.+ +.+||+...+..+...+.. ...||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 345556666666554 4578888876 5678999988888776652 23578
Q ss_pred EEEEecccccHHHHHHhcCCC
Q 027911 100 STVCVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 100 ~t~v~g~aaSag~~Ia~ag~~ 120 (217)
++.+.+.++|+|-+++.+.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHHh
Confidence 999999999999998887544
No 161
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=76.87 E-value=7.8 Score=33.85 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcCCCCceEEEEcCCCCcHHH-HHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCceeecCCcce
Q 027911 54 IIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRI 131 (217)
Q Consensus 54 ~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~-~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r~~~p~s~i 131 (217)
.|++.|..+++|+.++ .++.|.=+||...+ +...+.. +..++||++++.|..+ .+++|...-.|.+
T Consensus 187 ~fid~L~~fe~Dp~T~-~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkrmGhaGaiv 253 (293)
T COG0074 187 SFIDALEMFEADPETE-AIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKRMGHAGAIV 253 (293)
T ss_pred cHHHHHHHHhcCcccc-EEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccchhhhhhhhh
Confidence 4667887778776555 55668888888643 2223333 4455999999999988 4555665555544
No 162
>PLN02727 NAD kinase
Probab=76.63 E-value=12 Score=37.91 Aligned_cols=99 Identities=8% Similarity=-0.005 Sum_probs=62.5
Q ss_pred CCCCCcccchhhhHHHhhhcCc--------EEEEccccCcchHHHHHH---------------------HHHHhhhcCCC
Q 027911 18 GGPPPMLLGRFQNVLSQLFQHR--------IIRCGGPVEDDMANIIVA---------------------QLLYLDAVDPN 68 (217)
Q Consensus 18 ~~~~~~~~~~~~~~~s~~~~~~--------vI~i~G~I~~~~~~~l~~---------------------~L~~l~~~~~~ 68 (217)
++|.+.+..+|.-+|..-+++. -++..++|+++....+.+ .+..+....+.
T Consensus 232 ~~p~~~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL 311 (986)
T PLN02727 232 DYPCHTLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKI 311 (986)
T ss_pred CCCCcccccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCC
Confidence 4667777888887766555322 346777887765433332 12222222334
Q ss_pred CceEEEEcCCCC-cHHHHHHHHHHH-HhhCCCcEEEEecccccHHHHHHh
Q 027911 69 KDIIMYLNSPGG-SVTAGMAIFDTI-RHIRPDVSTVCVGLAASMGAFLLS 116 (217)
Q Consensus 69 ~~I~l~InSpGG-~v~~~~~I~~~I-~~~~~pV~t~v~g~aaSag~~Ia~ 116 (217)
+-+++-+++++. +...-.++.+.+ ...++||.++|..-+-++|.++++
T Consensus 312 ~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 312 EVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred eEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHH
Confidence 455555666554 678888899999 668899999998666566555554
No 163
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=74.99 E-value=24 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.5
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEE
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM 73 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l 73 (217)
-++.+.|.++......+.+.+..+..++..+.+++
T Consensus 14 ~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 14 VIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 36789999999999999888876554344566666
No 164
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=74.96 E-value=8.4 Score=29.86 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=36.1
Q ss_pred CcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhC--CCcEEEEecccc
Q 027911 38 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAA 108 (217)
Q Consensus 38 ~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~--~pV~t~v~g~aa 108 (217)
..+|.+..+.+-. +.+-|.++..++.++.|.+++.+-+- +....+.+++.. +||+++-.|...
T Consensus 29 s~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Grt~ 93 (138)
T PF13607_consen 29 SYVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGRTE 93 (138)
T ss_dssp SEEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE-----
T ss_pred eEEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCCch
Confidence 3566666666443 34556677888999999999997554 677778888765 999999988733
No 165
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=73.00 E-value=22 Score=29.87 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh---------------------------------hCCC
Q 027911 53 NIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH---------------------------------IRPD 98 (217)
Q Consensus 53 ~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~---------------------------------~~~p 98 (217)
+.+.+.+..++. .+.++|.+ +.+||+...+..+.+.+.. .+.|
T Consensus 83 ~~~~~~~~~l~~---~~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 159 (250)
T cd07563 83 ALLDEALDKLAD---TDALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKP 159 (250)
T ss_pred HHHHHHHHHhcC---CCeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCC
Confidence 344444444443 37777754 4578888888888777751 1258
Q ss_pred cEEEEecccccHHHHHHhcCCC
Q 027911 99 VSTVCVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 99 V~t~v~g~aaSag~~Ia~ag~~ 120 (217)
|++.+.+.++|+|-.++.+.+.
T Consensus 160 v~vL~~~~T~SaaE~~a~~lk~ 181 (250)
T cd07563 160 VYVLTSPVTFSAAEEFAYALKQ 181 (250)
T ss_pred EEEEeCCCcCcHHHHHHHHHHh
Confidence 9999999999999998887554
No 166
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=70.82 E-value=24 Score=30.80 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHH----------HHHHHHHhhCCCcEEEEe-----cccccHHHHHH
Q 027911 51 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM----------AIFDTIRHIRPDVSTVCV-----GLAASMGAFLL 115 (217)
Q Consensus 51 ~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~----------~I~~~I~~~~~pV~t~v~-----g~aaSag~~Ia 115 (217)
.-+.|.+.++.+-.+ .-++++.--|.|--..++. +..+.+++.+.|++++.. |+.||- +
T Consensus 142 vGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASf----A 215 (294)
T COG0777 142 VGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASF----A 215 (294)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhH----H
Confidence 457888888765543 3566666666554433322 123444455678888775 555554 3
Q ss_pred hcCCCCceeecCCcceeeecCC
Q 027911 116 SAGTKGKRYSLPNSRIMIHQPL 137 (217)
Q Consensus 116 ~ag~~~~r~~~p~s~i~ih~~~ 137 (217)
+.||. +++.|.+.|++..|.
T Consensus 216 ~lGDi--~iAEP~AlIGFAGpR 235 (294)
T COG0777 216 MLGDI--IIAEPGALIGFAGPR 235 (294)
T ss_pred hccCe--eecCcccccccCcch
Confidence 56888 899999999998884
No 167
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=70.36 E-value=14 Score=29.31 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhcCCCCceEEEEcCC-CCcHHHHHHHHHHHHhhC-----CCcEEEEeccccc
Q 027911 54 IIVAQLLYLDAVDPNKDIIMYLNSP-GGSVTAGMAIFDTIRHIR-----PDVSTVCVGLAAS 109 (217)
Q Consensus 54 ~l~~~L~~l~~~~~~~~I~l~InSp-GG~v~~~~~I~~~I~~~~-----~pV~t~v~g~aaS 109 (217)
.+.+.|..+.+++.++.|.+.+=-. |..-+.+..+...++..+ +||++++.|..+-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 3556676667788888888765555 556788888999988764 6899999887775
No 168
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=68.60 E-value=6.3 Score=34.67 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=31.3
Q ss_pred cCcEEEEccccCcch---HHHHHHHHHHhhhcCCCCceEEEEcCCCCcH
Q 027911 37 QHRIIRCGGPVEDDM---ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV 82 (217)
Q Consensus 37 ~~~vI~i~G~I~~~~---~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v 82 (217)
+.+||.++|.|...- ++.+.++|-. ..=+....=.+++||.|++.
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf-~hfP~~~~d~iyvdsyg~D~ 117 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGF-VHFPEFRMDDIYVDSYGNDL 117 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCC-cccccccccceeecccCccc
Confidence 367999999999874 4555555532 22244566678899999874
No 169
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=67.46 E-value=15 Score=28.80 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 027911 54 IIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 54 ~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v 103 (217)
.+++.|..+..+. .. +.|| ||+.--.+.+|.|+|+..+.|++=+-
T Consensus 55 ~Lid~Ihea~~~~--~~--IvIN-pga~THTSvAlrDAi~av~iP~vEVH 99 (146)
T COG0757 55 ELIDWIHEARGKA--GD--IVIN-PGAYTHTSVALRDAIAAVSIPVVEVH 99 (146)
T ss_pred HHHHHHHHhhccC--Ce--EEEc-CccchhhHHHHHHHHHhcCCCEEEEE
Confidence 4556665444322 12 5566 99999999999999999999965443
No 170
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=66.91 E-value=11 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.3
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEE
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM 73 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l 73 (217)
.++.+.|+++..+++.+.+.+..+-..++.+.++|
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 46789999999999999998866533334566666
No 171
>PRK06091 membrane protein FdrA; Validated
Probab=64.97 E-value=19 Score=34.48 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=44.4
Q ss_pred HHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccH
Q 027911 55 IVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 110 (217)
Q Consensus 55 l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSa 110 (217)
+.+.|.++..++.++.|.+++--|+-.+.. .+.+..++.++||+++..|....+
T Consensus 240 ~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~~g 293 (555)
T PRK06091 240 ALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTPAV 293 (555)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCchh
Confidence 456677788889999999999888877775 888888888999999999876544
No 172
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.71 E-value=26 Score=33.95 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh--hCCCcEEEEecccc
Q 027911 38 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH--IRPDVSTVCVGLAA 108 (217)
Q Consensus 38 ~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~--~~~pV~t~v~g~aa 108 (217)
..+|.+.|..+..+ .+.+-|.++.+++.++.|.+++-=.|.+ .....+.+++ .++||+++..|.++
T Consensus 195 S~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~~---e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 195 YEGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGRD---EYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCchh---HHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 45677877655333 2456777788899999999998744443 3444455555 46999999999887
No 173
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=56.70 E-value=44 Score=31.25 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=54.2
Q ss_pred cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC----------CcHHHHHHHHHHHHhhCCCcEEEEecccccHHHHH
Q 027911 45 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 114 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG----------G~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~I 114 (217)
|.+..+++.....-++...+ ..=++++..|+|| |-...+-.+..+.-..+.|.+|++.|-+..+. +-
T Consensus 363 G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syGG~-y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYGGN-YA 439 (536)
T ss_pred cccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccCCc-cc
Confidence 33344444444444443332 3457888899998 33444555666676777899999998888844 44
Q ss_pred Hh----cCCCCceeecCCcceeee
Q 027911 115 LS----AGTKGKRYSLPNSRIMIH 134 (217)
Q Consensus 115 a~----ag~~~~r~~~p~s~i~ih 134 (217)
+| .+|. .|+-|++.+.+.
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 33 4666 788888887654
No 174
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=55.48 E-value=30 Score=30.09 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=45.0
Q ss_pred CcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHH--HHHHHHH
Q 027911 38 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA--GMAIFDT 91 (217)
Q Consensus 38 ~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~--~~~I~~~ 91 (217)
.+|.=..+.++......+.++|..++++...+-.+|.+.|-+|.--+ +..+++.
T Consensus 34 ~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 34 QRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred ceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 46777899999999999999999999999999999999999988544 3344444
No 175
>PRK12435 ferrochelatase; Provisional
Probab=55.30 E-value=70 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=56.4
Q ss_pred ccccccCCCCCCcccchhhhHHHhhhc----CcEEEEc-cccCcch--HHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH
Q 027911 11 GLYGEQGGGPPPMLLGRFQNVLSQLFQ----HRIIRCG-GPVEDDM--ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT 83 (217)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~s~~~~----~~vI~i~-G~I~~~~--~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~ 83 (217)
..|-|.|++|-|||-+...+...++-+ ++|+.+. |-+.|.. ...+.-..+....+.+.+ ..++.+++-+-.
T Consensus 217 l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~--~~r~~~lN~~p~ 294 (311)
T PRK12435 217 IGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAK--YYRPEMPNADPL 294 (311)
T ss_pred EeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCc--EEeccCCCCCHH
Confidence 457898888999999999999888864 3455443 6666643 233322222323333343 667889999999
Q ss_pred HHHHHHHHHHhhC
Q 027911 84 AGMAIFDTIRHIR 96 (217)
Q Consensus 84 ~~~~I~~~I~~~~ 96 (217)
-...|.+.+++.-
T Consensus 295 fi~~La~lv~~~~ 307 (311)
T PRK12435 295 FIDALADVVLKKL 307 (311)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 176
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=54.77 E-value=38 Score=29.57 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=43.3
Q ss_pred CcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh-hCCCcEEEEecccc
Q 027911 38 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH-IRPDVSTVCVGLAA 108 (217)
Q Consensus 38 ~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~-~~~pV~t~v~g~aa 108 (217)
.+++.+....+.+. .+.+-|+++..++.++.|.+++-+-|-... .....++. .++||+++-.|...
T Consensus 171 S~~Vs~Gn~a~~dv--~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~~~~~~~~~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 171 STCVGIGGDPVNGT--SFIDVLEAFEKDPETEAIVMIGEIGGSAEE---EAADFIKQNMSKPVVGFIAGATA 237 (286)
T ss_pred EEEEEeCCCcCCCC--CHHHHHHHHhhCCCCcEEEEEEecCCchHH---HHHHHHHhcCCCCEEEEEecCCC
Confidence 34677777743111 234556677888999999999996543333 22334444 67999999988865
No 177
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=51.63 E-value=51 Score=28.87 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=40.8
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHh-hCCCcEEEEecccc
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH-IRPDVSTVCVGLAA 108 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~-~~~pV~t~v~g~aa 108 (217)
.++.+...-+.+. .+.+-|.++..|+.++.|.+++-+-| .-.. .....+.. .++||+++-.|...
T Consensus 174 ~~Vs~Gn~~~~dv--~~~D~l~~l~~Dp~T~~I~lylE~~~-~~~~--~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 174 TCVGIGGDPINGT--NFIDVLEAFEEDPETEAIVMIGEIGG-SAEE--EAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred EEEEeCCCcCCCC--CHHHHHHHHhhCCCCcEEEEEEecCC-cHHH--HHHHHHHHcCCCCEEEEEecCCC
Confidence 4566666632111 23456777788999999999999433 2211 22233333 37999999998865
No 178
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=47.88 E-value=99 Score=21.97 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=43.8
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEc-CCCCcHHHHHHHHHHHHhhC-CCcEEEEecccccHHHHHHh
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLN-SPGGSVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFLLS 116 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~In-SpGG~v~~~~~I~~~I~~~~-~pV~t~v~g~aaSag~~Ia~ 116 (217)
.++.++|+++...++.+.+.+...-.+...+.+++.+. .+-=+......+.+..+..+ .....++.|.-....-.+-.
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~ 91 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVE 91 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35789999999999999887754332234566776542 11122333444444554443 23444455554444444444
Q ss_pred cC
Q 027911 117 AG 118 (217)
Q Consensus 117 ag 118 (217)
.|
T Consensus 92 ~g 93 (109)
T cd07041 92 LG 93 (109)
T ss_pred hC
Confidence 33
No 179
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=46.10 E-value=36 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=27.5
Q ss_pred EEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCc
Q 027911 40 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS 81 (217)
Q Consensus 40 vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~ 81 (217)
++.+.|+||..++..+.+.+...-...+.+. +.||.-|=+
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~v~ 55 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSGVD 55 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCCCc
Confidence 6789999999999999888864443343433 455555533
No 180
>PRK14647 hypothetical protein; Provisional
Probab=45.51 E-value=33 Score=27.20 Aligned_cols=82 Identities=22% Similarity=0.092 Sum_probs=44.2
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCc
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGS 81 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~ 81 (217)
+.||.+||=.+-. .+++.+ + |+++ +.|+-+....+-+.|.. |+..+. ...-+|.++|||=+
T Consensus 20 ~~G~~L~dv~~~~~~~~~~l-------------r-V~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 20 SLGLELVELEYKREGREMVL-------------R-LFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HCCCEEEEEEEEecCCCeEE-------------E-EEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 5689999977632 333331 2 4554 34776666666555532 333332 45678999999954
Q ss_pred HHHHHHHHHHHHhhCCCcEEEE
Q 027911 82 VTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 82 v~~~~~I~~~I~~~~~pV~t~v 103 (217)
= .-...-+..+..+.+|.+..
T Consensus 86 R-pL~~~~~f~r~~G~~v~V~l 106 (159)
T PRK14647 86 R-PLKKEADYERYAGRLVKVRT 106 (159)
T ss_pred C-cCCCHHHHHHhCCcEEEEEE
Confidence 1 11112344455555554433
No 181
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=45.46 E-value=1.3e+02 Score=22.75 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=39.3
Q ss_pred cCcEEEEccccCcc---hHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 027911 37 QHRIIRCGGPVEDD---MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 37 ~~~vI~i~G~I~~~---~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~ 102 (217)
+.++..+.|.=+.+ ..+.+.+.+..+. +..+.+.+..|= ||++.......+.++.-...+++.
T Consensus 27 ~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~--~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~~~v~g 92 (125)
T TIGR02364 27 DVTIISAGGTDDGRLGTSPDKIIEAIEKAD--NEADGVLIFYDL-GSAVMNAEMAVELLEDEDRDKVHL 92 (125)
T ss_pred CccEEEEecCCCCCccchHHHHHHHHHHhc--CCCCCEEEEEcC-CCcHhHHHHHHHHhccccccEEEE
Confidence 35667776665544 2345555555432 225789999999 999998877777776433333333
No 182
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=44.24 E-value=66 Score=27.10 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=44.4
Q ss_pred EEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEE
Q 027911 41 IRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 101 (217)
Q Consensus 41 I~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t 101 (217)
+.-.++|-..+...+..++..+ ...-..+.+|+||+.++++..+-++|++.+..+.+
T Consensus 51 ~~atPaiaaG~~~el~r~~~~~----dgr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 51 ISATPAIAAGTPAELKRTLKTL----DGRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred hcCCCcccCCCHHHHHHhhhhc----cCceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 4456677777766776666432 24568889999999999999999999999877666
No 183
>PRK14635 hypothetical protein; Provisional
Probab=43.48 E-value=34 Score=27.23 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=36.0
Q ss_pred ehhccccccccCCCC-CCcccchhhhHHHhhhcCcEEEEc------cccCcchHHHHHHHHHH-hhhcCCCCceEEEEcC
Q 027911 6 LGKGYGLYGEQGGGP-PPMLLGRFQNVLSQLFQHRIIRCG------GPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNS 77 (217)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~vI~i~------G~I~~~~~~~l~~~L~~-l~~~~~~~~I~l~InS 77 (217)
+..||.+||=.+... ++|. =.|+|+ |-|+-+....+.+.|.. |+..+....-.|.+.|
T Consensus 16 ~~~g~el~dve~~~~~~~~~--------------lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSS 81 (162)
T PRK14635 16 LALPVKLYSLKVNQRPNHSL--------------IEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDFTLKVSS 81 (162)
T ss_pred HCCCCEEEEEEEEecCCCcE--------------EEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcC
Confidence 445778887665433 2222 125664 34666666555555532 3333335788999999
Q ss_pred CCCc
Q 027911 78 PGGS 81 (217)
Q Consensus 78 pGG~ 81 (217)
||=+
T Consensus 82 PGld 85 (162)
T PRK14635 82 AGAE 85 (162)
T ss_pred CCCC
Confidence 9944
No 184
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=43.32 E-value=48 Score=23.92 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=43.7
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCC--------CCceEEEEcCCCC-cHHHHHHHHHHHHhhC-CCcEEEEecccc
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDP--------NKDIIMYLNSPGG-SVTAGMAIFDTIRHIR-PDVSTVCVGLAA 108 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~--------~~~I~l~InSpGG-~v~~~~~I~~~I~~~~-~pV~t~v~g~aa 108 (217)
.++.+.|+++...++.+.+.+..+....+ .+.++|.+..--. +..+...+.+..+.++ ..+..+..+..-
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47889999999999999999987665543 4667766554332 2344444455555444 334444444433
Q ss_pred c
Q 027911 109 S 109 (217)
Q Consensus 109 S 109 (217)
.
T Consensus 91 ~ 91 (117)
T PF01740_consen 91 D 91 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=42.46 E-value=45 Score=23.59 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=26.5
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEE
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL 75 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~I 75 (217)
.++.+.|+++..+++.+.+++...-.++..+.++|.+
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4678999999999999988876433333455666544
No 186
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=42.35 E-value=1.6e+02 Score=26.06 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcCCCCceEEEEcCCC---C-----cHHHHHHHHHHHHhh-CCCcEEEEec----ccccHHHHHHhcCCC
Q 027911 55 IVAQLLYLDAVDPNKDIIMYLNSPG---G-----SVTAGMAIFDTIRHI-RPDVSTVCVG----LAASMGAFLLSAGTK 120 (217)
Q Consensus 55 l~~~L~~l~~~~~~~~I~l~InSpG---G-----~v~~~~~I~~~I~~~-~~pV~t~v~g----~aaSag~~Ia~ag~~ 120 (217)
+.+.+..++.....+.+.|.|+||- | +......+...+++. ++||.+-..- +..-+....-.+.|-
T Consensus 111 ~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dg 189 (310)
T COG0167 111 WADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADG 189 (310)
T ss_pred HHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcE
Confidence 3333333343333789999998886 3 233444455555554 3688887753 444444445555554
No 187
>PRK14637 hypothetical protein; Provisional
Probab=42.21 E-value=41 Score=26.49 Aligned_cols=82 Identities=18% Similarity=0.101 Sum_probs=44.0
Q ss_pred hhccccccccCC-CCCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHH-hhhcCCCCceEEEEcCCCCcH
Q 027911 7 GKGYGLYGEQGG-GPPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSV 82 (217)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~-l~~~~~~~~I~l~InSpGG~v 82 (217)
+.||.+||=.+- ...++.+ + |+|+ +.|+-+....+-++|.. ++........+|.+.|||=+=
T Consensus 20 ~~g~eLvdve~~~~~~~~~l-------------r-V~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR 85 (151)
T PRK14637 20 GLGCKLVDLSRRVQQAQGRV-------------R-AVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER 85 (151)
T ss_pred hcCCEEEEEEEEecCCCcEE-------------E-EEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC
Confidence 347778876642 2333331 2 4444 34777766666665532 222222456799999999661
Q ss_pred HHHHHHHHHHHhhCCCcEEEE
Q 027911 83 TAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 83 ~~~~~I~~~I~~~~~pV~t~v 103 (217)
.-...-+..+..+.+|.+..
T Consensus 86 -pL~~~~~f~r~~G~~V~V~l 105 (151)
T PRK14637 86 -VIKNAAEFSIFVGETVKVWF 105 (151)
T ss_pred -CCCCHHHHHHhCCCEEEEEE
Confidence 11123445555555665544
No 188
>PRK14639 hypothetical protein; Provisional
Probab=41.69 E-value=46 Score=25.83 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=45.7
Q ss_pred hhccccccccCC-CCCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCc
Q 027911 7 GKGYGLYGEQGG-GPPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGS 81 (217)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~ 81 (217)
+.||.+||=++- ...+|.+ + |+|+ |-|+-+....+.+.|.. ++..+. ...-+|.++|||=+
T Consensus 9 ~~G~eLvdve~~~~~~~~~l-------------r-V~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 74 (140)
T PRK14639 9 ECGVSFYDDELVSENGRKIY-------------R-VYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLE 74 (140)
T ss_pred hCCCEEEEEEEEecCCCcEE-------------E-EEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCC
Confidence 567888886543 3444441 2 4553 44777776666666633 333322 45678999999954
Q ss_pred HHHHHHHHHHHHhhCCCcEEEE
Q 027911 82 VTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 82 v~~~~~I~~~I~~~~~pV~t~v 103 (217)
= .-...-+..+..+.+|.+..
T Consensus 75 R-pL~~~~~f~r~~G~~v~v~l 95 (140)
T PRK14639 75 R-KLSKIEHFAKSIGELVKITT 95 (140)
T ss_pred C-cCCCHHHHHHhCCCEEEEEE
Confidence 1 11123344555555655543
No 189
>PRK14632 hypothetical protein; Provisional
Probab=41.45 E-value=51 Score=26.55 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=45.0
Q ss_pred hhccccccccCCCCCCcccchhhhHHHhhhcCcEEEEcc--ccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCcH
Q 027911 7 GKGYGLYGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGG--PVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGSV 82 (217)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~vI~i~G--~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~v 82 (217)
+.||.+||=.+-...++.+ + |+|+. -|+-+.+..+.+.|.. |+..+. ...-+|.++|||=+=
T Consensus 20 ~~G~eLvdve~~~~~~~~l-------------r-V~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 20 SLGLELWGIELSYGGRTVV-------------R-LFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HCCCEEEEEEEEeCCCcEE-------------E-EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 4578888866553333431 1 55553 3776666666666533 333222 456789999999651
Q ss_pred HHHHHHHHHHHhhCCCcEEEE
Q 027911 83 TAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 83 ~~~~~I~~~I~~~~~pV~t~v 103 (217)
.-....+..+..+.+|.+..
T Consensus 86 -pL~~~~~f~r~iG~~V~V~l 105 (172)
T PRK14632 86 -PFFRAEQMSPYVGRQIELTL 105 (172)
T ss_pred -cCCCHHHHHHhCCCEEEEEE
Confidence 11222444555555555443
No 190
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.35 E-value=52 Score=30.42 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=45.9
Q ss_pred CcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh--CCCcEEEEecccccH
Q 027911 38 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI--RPDVSTVCVGLAASM 110 (217)
Q Consensus 38 ~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~--~~pV~t~v~g~aaSa 110 (217)
..+|.+..+.+-+ +.+-|+++..++.++.|.+++.+- ..+....+..++. +|||+++..|....+
T Consensus 178 s~~vs~Gn~~d~~----~~d~l~~l~~D~~t~~I~ly~E~~----~~~~~f~~aa~~a~~~KPVv~~k~Grs~~g 244 (447)
T TIGR02717 178 SYFVSLGNKADID----ESDLLEYLADDPDTKVILLYLEGI----KDGRKFLKTAREISKKKPIVVLKSGTSEAG 244 (447)
T ss_pred ceEEECCchhhCC----HHHHHHHHhhCCCCCEEEEEecCC----CCHHHHHHHHHHHcCCCCEEEEecCCChhh
Confidence 3466666665433 345677778889999999999974 3355666666665 599999998886543
No 191
>PRK14640 hypothetical protein; Provisional
Probab=39.98 E-value=51 Score=25.92 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=45.5
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEEcc--ccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCc
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRCGG--PVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGS 81 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i~G--~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~ 81 (217)
..||.+||=.+.. .+++.+ + |+++. -|+-+....+.++|.. ++..+. ...-+|.++|||=+
T Consensus 18 ~~G~el~dve~~~~~~~~~l-------------r-V~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 18 ALGFELWGIEFIRAGKHSTL-------------R-VYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred hcCCEEEEEEEEecCCCcEE-------------E-EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 3577888866433 333331 2 55543 3777776666666633 333322 45779999999965
Q ss_pred HHHHHHHHHHHHhhCCCcEEEE
Q 027911 82 VTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 82 v~~~~~I~~~I~~~~~pV~t~v 103 (217)
= .-....+..+..+.+|.+..
T Consensus 84 R-pL~~~~~f~r~~G~~v~V~l 104 (152)
T PRK14640 84 R-PLFKVAQFEKYVGQEAAVTL 104 (152)
T ss_pred C-cCCCHHHHHHhCCCeEEEEE
Confidence 1 11222445555566655543
No 192
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=39.23 E-value=2.2e+02 Score=24.05 Aligned_cols=81 Identities=22% Similarity=0.165 Sum_probs=47.9
Q ss_pred hhcCcEEEEccc-cCcchHHHHHHHHHHhhhcCCCCceEEEE-cCCCCcHHHHHHHHHHHHh------------------
Q 027911 35 LFQHRIIRCGGP-VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------------ 94 (217)
Q Consensus 35 ~~~~~vI~i~G~-I~~~~~~~l~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~~~~I~~~I~~------------------ 94 (217)
+...++-||.-+ .++...+.+.+.+. .....++++|.+ +-+||.+. ..|.+.+..
T Consensus 84 ~~~~~igYi~i~~~~~~~~~~~~~~~~---~~~~~~glIiDlR~N~GG~~~--~~l~~~~~~~~~~~~~~r~~~~~~~~p 158 (266)
T cd07562 84 LSDGRIGYVHIPDMGDDGFAEFLRDLL---AEVDKDGLIIDVRFNGGGNVA--DLLLDFLSRRRYGYDIPRGGGKPVTYP 158 (266)
T ss_pred hcCCcEEEEEeCCCChHHHHHHHHHHH---hcCCCceEEEEecCCCCCcHH--HHHHHHhCCCceEEEccCCCCCCCCCc
Confidence 333555444322 23444444444443 332378888875 44666643 334444321
Q ss_pred ---hCCCcEEEEecccccHHHHHHhcCCC
Q 027911 95 ---IRPDVSTVCVGLAASMGAFLLSAGTK 120 (217)
Q Consensus 95 ---~~~pV~t~v~g~aaSag~~Ia~ag~~ 120 (217)
.+.||++.+.+.++|+|-+++.+.+.
T Consensus 159 ~~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 159 SGRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred ccccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 24799999999999999998887544
No 193
>PRK14643 hypothetical protein; Provisional
Probab=38.58 E-value=54 Score=26.21 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=43.2
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEE------ccccCcchHHHHHHHHHH-hhhc-CCCCceEEEEcC
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRC------GGPVEDDMANIIVAQLLY-LDAV-DPNKDIIMYLNS 77 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i------~G~I~~~~~~~l~~~L~~-l~~~-~~~~~I~l~InS 77 (217)
+.||-+||=++.. ..+|.+ | |+| +|.|+-+.+..+.++|-. ++.. .-...=+|.++|
T Consensus 21 ~~G~eL~die~~~~~~~~~l-------------r-V~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSS 86 (164)
T PRK14643 21 VLNLKVYEINNLKEFENDMI-------------Q-ILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISS 86 (164)
T ss_pred hcCCEEEEEEEEecCCCcEE-------------E-EEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecC
Confidence 4578888866443 233331 2 555 245777665555555422 2322 234567899999
Q ss_pred CCCcHHHHHHHHHHHHhhCCCcEEEE
Q 027911 78 PGGSVTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 78 pGG~v~~~~~I~~~I~~~~~pV~t~v 103 (217)
||=+= .-...-+..+..+.+|.+..
T Consensus 87 PGleR-pL~~~~df~r~~G~~V~V~l 111 (164)
T PRK14643 87 SGIEK-QIRSQEELVKALNQWVYVQL 111 (164)
T ss_pred CCCCC-CCCCHHHHHHhcCCeEEEEE
Confidence 99651 11112344455555555443
No 194
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=37.93 E-value=48 Score=27.29 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=35.5
Q ss_pred ccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhh
Q 027911 44 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI 95 (217)
Q Consensus 44 ~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~ 95 (217)
+-+|....++.+.+++..+..-.+.+.|-+++++++|.|+.+.-|-++++.=
T Consensus 23 d~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~g 74 (200)
T KOG3093|consen 23 DAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDG 74 (200)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcC
Confidence 3344444455565655444333457999999999999999888777777654
No 195
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=36.88 E-value=2e+02 Score=26.48 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=52.5
Q ss_pred EEEEccccCc-chHHHHHHHHHHhhhcCCCCceEEEEcCCCCcH-----HHHHHHHHHHHhhCCCcEEEEecccccHHHH
Q 027911 40 IIRCGGPVED-DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV-----TAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 40 vI~i~G~I~~-~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v-----~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~ 113 (217)
++...-.+.. +....+++.|+.++..+. .=+|.|-=.||+. +.-..+..+|..++.||++-+..--- =++
T Consensus 159 ~~~~~~~vQG~~a~~~i~~al~~~~~~~~--~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D--~ti 234 (432)
T TIGR00237 159 VVIYPTLVQGEGAVQSIVESIELANTKNE--CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHETD--FTI 234 (432)
T ss_pred EEEecccccCccHHHHHHHHHHHhhcCCC--CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCCC--ccH
Confidence 3333333333 356788889987775332 2344566788885 55678889999999999887752111 122
Q ss_pred HHhcCCCCceeecCCcc
Q 027911 114 LLSAGTKGKRYSLPNSR 130 (217)
Q Consensus 114 Ia~ag~~~~r~~~p~s~ 130 (217)
.=..+|. |...|++-
T Consensus 235 ~D~vAd~--ra~TPtaa 249 (432)
T TIGR00237 235 SDFVADL--RAPTPSAA 249 (432)
T ss_pred HHHhhhc--cCCCcHHH
Confidence 3334566 77777764
No 196
>PHA02097 hypothetical protein
Probab=36.10 E-value=25 Score=22.68 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=13.4
Q ss_pred CCCceEEEEcCCCCcH
Q 027911 67 PNKDIIMYLNSPGGSV 82 (217)
Q Consensus 67 ~~~~I~l~InSpGG~v 82 (217)
....++.-+|+|||-+
T Consensus 8 d~~~vt~amntp~gv~ 23 (59)
T PHA02097 8 DSQVVTSAMNTPGGVI 23 (59)
T ss_pred CCceEEEEeeCCCcEE
Confidence 4678999999999974
No 197
>PRK14630 hypothetical protein; Provisional
Probab=35.95 E-value=89 Score=24.35 Aligned_cols=82 Identities=7% Similarity=-0.091 Sum_probs=43.7
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT 83 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~ 83 (217)
+.||-+||=++-. ..++.+ | |+++ +-|+-+....+-+++..+-.+.-...-+|.++|||=+=
T Consensus 20 ~~G~eLvdve~~~~~~~~~l-------------r-V~Id~~~gV~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldR- 84 (143)
T PRK14630 20 RLGIEIIEINTFRNRNEGKI-------------Q-IVLYKKDSFGVDTLCDLHKMILLILEAVLKYNFSLEISTPGINR- 84 (143)
T ss_pred HcCCEEEEEEEEecCCCcEE-------------E-EEEECCCCCCHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCC-
Confidence 3477778766432 333331 2 4443 34776666666666533222333567789999999651
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 027911 84 AGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 84 ~~~~I~~~I~~~~~pV~t~v 103 (217)
.-....+..+..+.+|.+..
T Consensus 85 pL~~~~df~r~~G~~v~V~l 104 (143)
T PRK14630 85 KIKSDREFKIFEGKKIKLML 104 (143)
T ss_pred cCCCHHHHHHhCCCEEEEEE
Confidence 11122344455555554433
No 198
>PRK14641 hypothetical protein; Provisional
Probab=35.47 E-value=67 Score=25.97 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=43.2
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHH-hhhcCCC-----CceEEEEcC
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLY-LDAVDPN-----KDIIMYLNS 77 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~-l~~~~~~-----~~I~l~InS 77 (217)
+.||.+||=.+.. .+++.+ + |+++ |-|+-+.+..+-+.|.. ++..+.. ..-+|.++|
T Consensus 21 ~~G~eLvdve~~~~~~~~~l-------------r-V~ID~~~gv~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSS 86 (173)
T PRK14641 21 GEGVYLVSMTVKGSGKGRKI-------------E-VLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSS 86 (173)
T ss_pred cCCeEEEEEEEEeCCCCcEE-------------E-EEEeCCCCCCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeC
Confidence 6678888866433 333331 2 4444 33666666666555532 3333322 577899999
Q ss_pred CCCcHHHHHHHHHHHHhhCCCcEE
Q 027911 78 PGGSVTAGMAIFDTIRHIRPDVST 101 (217)
Q Consensus 78 pGG~v~~~~~I~~~I~~~~~pV~t 101 (217)
||=+= .-....+..+..+.+|.+
T Consensus 87 PGldR-pL~~~~~f~r~~G~~V~V 109 (173)
T PRK14641 87 PGLGE-PIILPRQYGRHVGRLLRV 109 (173)
T ss_pred CCCCC-cCCCHHHHHHhCCCEEEE
Confidence 99651 111234445555555444
No 199
>PRK14638 hypothetical protein; Provisional
Probab=35.42 E-value=65 Score=25.30 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=45.3
Q ss_pred hhccccccccCCC-CCCcccchhhhHHHhhhcCcEEEEc---cccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCC
Q 027911 7 GKGYGLYGEQGGG-PPPMLLGRFQNVLSQLFQHRIIRCG---GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGG 80 (217)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~vI~i~---G~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG 80 (217)
+.||.+||=.+-. .+++.+ + |+++ |.|+-+....+-+.|.. ++..+. ...-+|.++|||=
T Consensus 20 ~~G~elvdve~~~~~~~~~l-------------r-V~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 85 (150)
T PRK14638 20 EQGLEIFDVQYRRESRGWVL-------------R-IIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGL 85 (150)
T ss_pred HcCCEEEEEEEEecCCCcEE-------------E-EEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCC
Confidence 5678888876543 333331 2 4554 45877777666666643 332222 3566899999996
Q ss_pred cHHHHHHHHHHHHhhCCCcEEEE
Q 027911 81 SVTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 81 ~v~~~~~I~~~I~~~~~pV~t~v 103 (217)
+= .-...-+..+..+.+|.+..
T Consensus 86 dR-pL~~~~~f~r~~G~~v~V~~ 107 (150)
T PRK14638 86 DR-PLRGPKDYVRFTGKLAKIVT 107 (150)
T ss_pred CC-CCCCHHHHHHhCCCEEEEEE
Confidence 51 11122344455555554444
No 200
>PRK14633 hypothetical protein; Provisional
Probab=34.81 E-value=77 Score=24.85 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=44.8
Q ss_pred hhccccccccCCCCCCcccchhhhHHHhhhcCcEEEEc--cccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCcH
Q 027911 7 GKGYGLYGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCG--GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGSV 82 (217)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~vI~i~--G~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~v 82 (217)
+.||.+||=++-...++.+ + |+++ +-|+-+....+-++|.. ++..+. ...-.|.+.|||=+=
T Consensus 16 ~~G~eL~dve~~~~~~~~l-------------r-V~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 16 DLGYILWGIEVVGSGKLTI-------------R-IFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HCCCEEEEEEEEeCCCcEE-------------E-EEEeCCCCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 4578888876543333331 2 4553 33776666666666633 333222 567899999999651
Q ss_pred HHHHHHHHHHHhhCCCcEEE
Q 027911 83 TAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 83 ~~~~~I~~~I~~~~~pV~t~ 102 (217)
.-...-+..+..+.+|.+.
T Consensus 82 -pL~~~~~f~r~~G~~v~V~ 100 (150)
T PRK14633 82 -QIFNIIQAQALVGFNVKAV 100 (150)
T ss_pred -CCCCHHHHHHhCCCeEEEE
Confidence 1122234455555555443
No 201
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=34.32 E-value=2.2e+02 Score=24.45 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHhhhcC-CCCceEEEEcCC---------CCcHHHHHHHHHHHHhh-CCCcEEEEe
Q 027911 50 DMANIIVAQLLYLDAVD-PNKDIIMYLNSP---------GGSVTAGMAIFDTIRHI-RPDVSTVCV 104 (217)
Q Consensus 50 ~~~~~l~~~L~~l~~~~-~~~~I~l~InSp---------GG~v~~~~~I~~~I~~~-~~pV~t~v~ 104 (217)
.+.+.+.+..+.++... ..+.|.|.+.|| |++..-..+|...+++. ..||.+-+.
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 33444544444444332 378899999987 35667778888888875 578877775
No 202
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=34.14 E-value=64 Score=19.87 Aligned_cols=31 Identities=16% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHHHHhcCCCHHHHHhhhCCCcccCHHHHHH
Q 027911 163 GYLSYHTGQTLEKINEDTDRDFFMSAEEAKD 193 (217)
Q Consensus 163 ~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~ 193 (217)
.-+++.+|.+...+.++..+....+.+.+.+
T Consensus 13 ~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 4468888999999999988888878887765
No 203
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=33.53 E-value=48 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhCC--CcEEEEeccccc
Q 027911 84 AGMAIFDTIRHIRP--DVSTVCVGLAAS 109 (217)
Q Consensus 84 ~~~~I~~~I~~~~~--pV~t~v~g~aaS 109 (217)
.+.+|.+.|..+++ ||.+|+.|.-.+
T Consensus 2 ~a~eII~~I~~skKkTPVKvYv~G~l~~ 29 (83)
T PF08503_consen 2 DAEEIIRYIKNSKKKTPVKVYVKGDLAG 29 (83)
T ss_dssp HHHHHHHHHHHCTTB-EEEEEEEESCTC
T ss_pred CHHHHHHHHHhCCCCCCEEEEEeeeecC
Confidence 46889999999985 899999997444
No 204
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.17 E-value=1.3e+02 Score=22.22 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccccHHHH
Q 027911 66 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 113 (217)
Q Consensus 66 ~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~ 113 (217)
-+-.-+++=+.+.+=+......+.+.|.++.+||.++|..-.-|...|
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~ 103 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALW 103 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHH
Confidence 345556666666555567777888899999999999997444444433
No 205
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=31.85 E-value=1.2e+02 Score=27.23 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=59.0
Q ss_pred ccccccCCCCCCcccchhh---hHHHhhhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHH
Q 027911 11 GLYGEQGGGPPPMLLGRFQ---NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA 87 (217)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~ 87 (217)
.+|.+..+.|++-..+.+- |+.+.+.+..+|.++-+.++.+...+-.++.... +.=.+.+|.-=|.+-.-..
T Consensus 188 i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~m-----k~g~vlVN~aRG~iide~~ 262 (336)
T KOG0069|consen 188 ILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKM-----KDGAVLVNTARGAIIDEEA 262 (336)
T ss_pred eeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhc-----CCCeEEEeccccccccHHH
Confidence 3455555555554444444 8999999999999999999999888877775433 2234568998899999999
Q ss_pred HHHHHHh
Q 027911 88 IFDTIRH 94 (217)
Q Consensus 88 I~~~I~~ 94 (217)
+++++++
T Consensus 263 l~eaL~s 269 (336)
T KOG0069|consen 263 LVEALKS 269 (336)
T ss_pred HHHHHhc
Confidence 9999987
No 206
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=31.08 E-value=1.1e+02 Score=21.49 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=39.6
Q ss_pred hhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEecccc
Q 027911 35 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 108 (217)
Q Consensus 35 ~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~g~aa 108 (217)
||.+++|.++|+=+.-....+.+.+ ........|. .++ -||. ........+...+.|+.++.+.-..
T Consensus 1 fFa~~vIlVEG~tE~~~l~~~~~~~---~~~~~~~~i~-ii~-~gG~--~~~~~~~ll~~~~i~~~vi~D~D~~ 67 (97)
T cd01026 1 FFADKVILVEGDSEEILLPALAKKL---GLDLDEAGIS-IIP-VGGK--NFKPFIKLLNALGIPVAVLTDLDAK 67 (97)
T ss_pred CCCCeEEEEecHHHHHHHHHHHHHh---CCCHHHCCEE-EEE-eCCc--chHHHHHHHHHcCCCEEEEEeCCCC
Confidence 3567899999986665544444443 1111122232 234 3565 4555578888888998888875443
No 207
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=30.89 E-value=3.1e+02 Score=23.97 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCceEEEEcCC--CC------cHHHHHHHHHHHHhh-CCCcEEEEeccc
Q 027911 68 NKDIIMYLNSP--GG------SVTAGMAIFDTIRHI-RPDVSTVCVGLA 107 (217)
Q Consensus 68 ~~~I~l~InSp--GG------~v~~~~~I~~~I~~~-~~pV~t~v~g~a 107 (217)
.+.|.|.++|| .| +......|...+++. ++||.+-..-..
T Consensus 120 ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~ 168 (310)
T PRK02506 120 NGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYF 168 (310)
T ss_pred CCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCC
Confidence 78999999998 22 355556666666654 468887776543
No 208
>smart00250 PLEC Plectin repeat.
Probab=30.08 E-value=35 Score=20.03 Aligned_cols=17 Identities=47% Similarity=0.401 Sum_probs=14.2
Q ss_pred cccCHHHHHHcCCceee
Q 027911 184 FFMSAEEAKDYGLIDGV 200 (217)
Q Consensus 184 ~~lta~EA~~~GliD~I 200 (217)
.-+|-.||++-|++|..
T Consensus 20 ~~lsv~eA~~~glid~~ 36 (38)
T smart00250 20 QKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCcCHHHHHHcCCCCcc
Confidence 34699999999999974
No 209
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=29.93 E-value=81 Score=24.64 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 027911 54 IIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 54 ~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v 103 (217)
.+++.|.... +..++++ || |||....+.+|.|+|+..+.|++=+-
T Consensus 55 elid~I~~a~--~~~dgiI--IN-pga~thtS~Ai~DAl~~~~~P~vEVH 99 (140)
T PF01220_consen 55 ELIDWIHEAR--DDVDGII--IN-PGAYTHTSIAIRDALKAISIPVVEVH 99 (140)
T ss_dssp HHHHHHHHHT--CTTSEEE--EE--GGGGHT-HHHHHHHHCCTS-EEEEE
T ss_pred HHHHHHHHHH--hhCCEEE--Ec-cchhccccHHHHHHHHcCCCCEEEEE
Confidence 4666675433 2255555 44 99999999999999999999955443
No 210
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=29.66 E-value=59 Score=29.86 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=36.6
Q ss_pred cchhhhHHHhhhcCcEEEEccccCcchHH-HHHHHHHHhhhcCCCCceEEEEcCCC
Q 027911 25 LGRFQNVLSQLFQHRIIRCGGPVEDDMAN-IIVAQLLYLDAVDPNKDIIMYLNSPG 79 (217)
Q Consensus 25 ~~~~~~~~s~~~~~~vI~i~G~I~~~~~~-~l~~~L~~l~~~~~~~~I~l~InSpG 79 (217)
..+|--..+++..+||+.++..|-..+.. .+++-|+ +.+.+.++++|-||=
T Consensus 344 ~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlr----eaGAkeVh~riAsPp 395 (474)
T KOG0572|consen 344 KKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLR----EAGAKEVHIRIASPP 395 (474)
T ss_pred hhhcccchhhcCCceEEEEecceeccCchHHHHHHHH----HcCCcEEEEEecCCc
Confidence 44555567778889999999998877644 4444443 456889999999984
No 211
>PRK14631 hypothetical protein; Provisional
Probab=29.45 E-value=89 Score=25.25 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=32.2
Q ss_pred ccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 027911 46 PVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC 103 (217)
Q Consensus 46 ~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v 103 (217)
.|+-+.+..+.++|.. |+..+. ...-+|.++|||=+= .-....+..+..+.+|.+..
T Consensus 66 gvtiddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR-pL~~~~df~r~~G~~V~V~l 124 (174)
T PRK14631 66 GIGVEDCVRVTQQVGAMLDVHDPISGEYALEVSSPGWDR-PFFQLEQLQGYIGQQVALRL 124 (174)
T ss_pred CcCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCeEEEEE
Confidence 3666666666666533 333222 456789999999651 12224455566555555443
No 212
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.53 E-value=3.7e+02 Score=22.95 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEcCC---------CCcHHHHHHHHHHHHhh-CCCcEEEEe
Q 027911 52 ANIIVAQLLYLDAVDPNKDIIMYLNSP---------GGSVTAGMAIFDTIRHI-RPDVSTVCV 104 (217)
Q Consensus 52 ~~~l~~~L~~l~~~~~~~~I~l~InSp---------GG~v~~~~~I~~~I~~~-~~pV~t~v~ 104 (217)
.+.+....+.+... ..+.|.|.+.|| |++.....++...+++. ..||.+-+.
T Consensus 101 ~~~~~~~a~~~~~~-G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 101 VEEFVEVAEKLADA-GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 34444444444433 578999999887 35567777888888887 678887664
No 213
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=28.48 E-value=1.2e+02 Score=26.25 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=44.3
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 104 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~ 104 (217)
+++++...+...-.+.+.+.|..++++.+.+-++..-..+.|...-...+++.|++++..+.|..+
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~GN 67 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMGN 67 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEccc
Confidence 467777777665556666667777766555545544555544445568889999999999888753
No 214
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.32 E-value=3e+02 Score=23.88 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHhhhcCC-CCceEEEEcCCCCcH-----HHHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCce
Q 027911 50 DMANIIVAQLLYLDAVDP-NKDIIMYLNSPGGSV-----TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKR 123 (217)
Q Consensus 50 ~~~~~l~~~L~~l~~~~~-~~~I~l~InSpGG~v-----~~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r 123 (217)
+....+++.|..++..+. ...=+|.|-=.||+. +.-..+..+|..++.||++=+..---. ++.=..+|. |
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~D~--ti~D~vAd~--r 130 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHETDF--TIADFVADL--R 130 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCCCc--hHHHHHHHh--h
Confidence 456788999988775431 122334466677874 567888999999999988877533222 344445566 7
Q ss_pred eecCCcc
Q 027911 124 YSLPNSR 130 (217)
Q Consensus 124 ~~~p~s~ 130 (217)
...|++.
T Consensus 131 a~TPtaa 137 (319)
T PF02601_consen 131 APTPTAA 137 (319)
T ss_pred CCCHHHH
Confidence 8778764
No 215
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.11 E-value=4.7e+02 Score=23.91 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHH-----HHHHHHHHHHhhCCCcEEEEecccccHHHHHHhcCCCCce
Q 027911 49 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-----AGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKR 123 (217)
Q Consensus 49 ~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~-----~~~~I~~~I~~~~~pV~t~v~g~aaSag~~Ia~ag~~~~r 123 (217)
++....+++.|..++..+ .=+|.|-=.||++. .-..+..+|-+++.||++-+..--- =++.=..||. |
T Consensus 175 ~~A~~~i~~al~~~~~~~---~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D--~tl~D~vAd~--r 247 (438)
T PRK00286 175 EGAAASIVAAIERANARG---EDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHETD--FTIADFVADL--R 247 (438)
T ss_pred ccHHHHHHHHHHHhcCCC---CCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCCC--ccHHHHhhhc--c
Confidence 345678889998766532 23344666788864 5578899999999998887753211 1233345566 8
Q ss_pred eecCCccee
Q 027911 124 YSLPNSRIM 132 (217)
Q Consensus 124 ~~~p~s~i~ 132 (217)
...|++.--
T Consensus 248 a~TPtaaae 256 (438)
T PRK00286 248 APTPTAAAE 256 (438)
T ss_pred CCChHHHHH
Confidence 888876543
No 216
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.11 E-value=49 Score=26.86 Aligned_cols=28 Identities=36% Similarity=0.758 Sum_probs=19.8
Q ss_pred CC-CcHHHHH------HHHHHHHhhCCCcEEEEec
Q 027911 78 PG-GSVTAGM------AIFDTIRHIRPDVSTVCVG 105 (217)
Q Consensus 78 pG-G~v~~~~------~I~~~I~~~~~pV~t~v~g 105 (217)
|| |...++. .+.+.+++.++||..+|.|
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG 79 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLG 79 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHH
Confidence 88 7766653 3567788888897777765
No 217
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.76 E-value=3.5e+02 Score=23.24 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhhcCCCCceEEEEcCCC----Cc-----HHHHHHHHHHHHhh-CCCcEEEEe
Q 027911 51 MANIIVAQLLYLDAVDPNKDIIMYLNSPG----GS-----VTAGMAIFDTIRHI-RPDVSTVCV 104 (217)
Q Consensus 51 ~~~~l~~~L~~l~~~~~~~~I~l~InSpG----G~-----v~~~~~I~~~I~~~-~~pV~t~v~ 104 (217)
..+.+.+....++.....+.|.|.+.||- |. ..-..++...+++. ..||.+-+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 34555555554443222788999887762 32 35567777777776 578777665
No 218
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=27.63 E-value=1.6e+02 Score=23.19 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=45.2
Q ss_pred EccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCC-------cH---------HHHHHHHHHHHhhCCCcEEEEecc
Q 027911 43 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-------SV---------TAGMAIFDTIRHIRPDVSTVCVGL 106 (217)
Q Consensus 43 i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG-------~v---------~~~~~I~~~I~~~~~pV~t~v~g~ 106 (217)
..-.+++. .+.+...+..++.+.+.+.|+++-|.-|- ++ +--..|++.....+.|.+.+.+
T Consensus 66 ~~~~~dpt-~e~~~~~~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~D-- 142 (154)
T PF14538_consen 66 YKQSLDPT-VEDLKRLCQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFD-- 142 (154)
T ss_pred EEEecCCC-HHHHHHHHHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEE--
Confidence 34444444 45555556666666677899999998883 22 3346789999999999777764
Q ss_pred cccHHHHH
Q 027911 107 AASMGAFL 114 (217)
Q Consensus 107 aaSag~~I 114 (217)
|.+||.+|
T Consensus 143 C~~AG~il 150 (154)
T PF14538_consen 143 CSNAGSIL 150 (154)
T ss_pred CCcHHHHH
Confidence 44555443
No 219
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=27.52 E-value=30 Score=21.22 Aligned_cols=18 Identities=44% Similarity=0.399 Sum_probs=14.2
Q ss_pred CcccCHHHHHHcCCceee
Q 027911 183 DFFMSAEEAKDYGLIDGV 200 (217)
Q Consensus 183 ~~~lta~EA~~~GliD~I 200 (217)
...+|-+||++.|+||.-
T Consensus 19 g~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 19 GERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TEEEEHHHHHHTTSS-HH
T ss_pred CeEEcHHHHHHCCCcCHH
Confidence 456799999999999963
No 220
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=27.27 E-value=85 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCHHHHHhhhCCCcccCHHHHHHcC
Q 027911 162 NGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYG 195 (217)
Q Consensus 162 ~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~~~G 195 (217)
..-+|+..|.+...+.+++++..-+|++-|+.++
T Consensus 26 ~~~lA~~lgV~r~~is~ling~~~iT~dmAlrL~ 59 (104)
T COG3093 26 QTELAEALGVTRNTISELINGRRAITADMALRLA 59 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCcCCCHHHHHHHH
Confidence 3345777888998898888888888888887764
No 221
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=27.25 E-value=1e+02 Score=28.89 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.5
Q ss_pred cCcEEEEccccCcch-HHHHHHHHHHhhhcCCCCceEEEEcCC
Q 027911 37 QHRIIRCGGPVEDDM-ANIIVAQLLYLDAVDPNKDIIMYLNSP 78 (217)
Q Consensus 37 ~~~vI~i~G~I~~~~-~~~l~~~L~~l~~~~~~~~I~l~InSp 78 (217)
.++|+.++..|+..+ .+.+.+.|+. .+.+.|.++|.||
T Consensus 348 gk~VlLVDDvittGtTl~~~~~~Lk~----aGA~eV~v~i~sP 386 (471)
T PRK06781 348 GKRVVMIDDSIVRGTTSKRIVRMLRE----AGATEVHVRIASP 386 (471)
T ss_pred CceEEEEeceeccchHHHHHHHHHHH----cCCcEEEEEECCC
Confidence 467899999988775 4455455542 3478899999999
No 222
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.60 E-value=1.4e+02 Score=23.60 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=25.8
Q ss_pred EEEc--cccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCCCc
Q 027911 41 IRCG--GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGS 81 (217)
Q Consensus 41 I~i~--G~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpGG~ 81 (217)
|+++ |.++-+....+-+++.. ++..++ ...-+|.++|||-+
T Consensus 41 I~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 41 IYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 4454 67777666666555532 343343 34777999999976
No 223
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=25.47 E-value=3e+02 Score=24.87 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=43.8
Q ss_pred EEEccccCcchHHHHHHHHHHhh--h-cCCCCceEEEEcCCCCcHHHH---HHHHHHHHhhCCCcEEEEecccccHH
Q 027911 41 IRCGGPVEDDMANIIVAQLLYLD--A-VDPNKDIIMYLNSPGGSVTAG---MAIFDTIRHIRPDVSTVCVGLAASMG 111 (217)
Q Consensus 41 I~i~G~I~~~~~~~l~~~L~~l~--~-~~~~~~I~l~InSpGG~v~~~---~~I~~~I~~~~~pV~t~v~g~aaSag 111 (217)
++++-+.+...++.+...|.... . ++..++=++.|||.+-...+. ..+...+++....+.+++.|.-++.-
T Consensus 2 ~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~ 78 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSN 78 (414)
T ss_pred EeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccC
Confidence 45667777777777777775421 1 122345677899988877664 44444455444456777777666544
No 224
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=24.90 E-value=80 Score=29.64 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=27.7
Q ss_pred cCcEEEEccccCcch-HHHHHHHHHHhhhcCCCCceEEEEcCC
Q 027911 37 QHRIIRCGGPVEDDM-ANIIVAQLLYLDAVDPNKDIIMYLNSP 78 (217)
Q Consensus 37 ~~~vI~i~G~I~~~~-~~~l~~~L~~l~~~~~~~~I~l~InSp 78 (217)
.++|+.++..|+..+ .+.+++.|+. .+.+.|+++|.||
T Consensus 356 gk~VlLVDDsittGtTl~~~~~~L~~----aGak~V~~ri~sP 394 (474)
T PRK06388 356 GKRIVLVDDSIVRGNTMRFIVKIMRK----YGAKEVHVRIGSP 394 (474)
T ss_pred CceEEEEeCeECcHHHHHHHHHHHHH----cCCCEEEEEeCCC
Confidence 367899999988875 4455555542 3478899999999
No 225
>PRK14642 hypothetical protein; Provisional
Probab=24.34 E-value=1.4e+02 Score=24.70 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=29.4
Q ss_pred cCcchHHHHHHHHHH-hhhcCCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEE
Q 027911 47 VEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 101 (217)
Q Consensus 47 I~~~~~~~l~~~L~~-l~~~~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t 101 (217)
|+-+.+..+.++|.. |+.++ ...-+|.+.|||=+= .-....+..+..+.+|.+
T Consensus 52 VtidDC~~vSR~Is~~LDve~-~~y~~LEVSSPGldR-PLk~~~df~rfiG~~V~V 105 (197)
T PRK14642 52 VTVEDCEKVTRQLQFALEVDG-VDYKRLEVSSPGIDR-PLRHEQDFERFAGEVIDI 105 (197)
T ss_pred ccHHHHHHHHHHHHHHhcccC-ccccEEEEeCCCCCC-CCCCHHHHHHhCCCeEEE
Confidence 666666666666644 33222 333379999999551 112234555665655544
No 226
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=24.19 E-value=2.3e+02 Score=19.08 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=47.5
Q ss_pred cEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCC-CcHHHHHHHHHHHHhhC-CCcEEEEecccccHHHHHHh
Q 027911 39 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-GSVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFLLS 116 (217)
Q Consensus 39 ~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpG-G~v~~~~~I~~~I~~~~-~pV~t~v~g~aaSag~~Ia~ 116 (217)
.++.+.|+++......+.+.+....... .+.+.+.+..-. =+..+...+.+..+..+ ....+.+.|......-++-.
T Consensus 10 ~ii~l~G~l~~~~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~~~~~~~l~~ 88 (99)
T cd07043 10 LVVRLSGELDAATAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVSPAVRRVLEL 88 (99)
T ss_pred EEEEEeceecccchHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4678999999999998888876554432 456665543322 23455555566666654 24555555655555444444
Q ss_pred cC
Q 027911 117 AG 118 (217)
Q Consensus 117 ag 118 (217)
.+
T Consensus 89 ~g 90 (99)
T cd07043 89 TG 90 (99)
T ss_pred hC
Confidence 43
No 227
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=23.39 E-value=1.8e+02 Score=17.54 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCHHHHHhhhCCCcccCHHHHH
Q 027911 162 NGYLSYHTGQTLEKINEDTDRDFFMSAEEAK 192 (217)
Q Consensus 162 ~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~ 192 (217)
..-+++..|.+...+.++..+..-.+.+++.
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~ 48 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVL 48 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHH
Confidence 3446888888888888887766555655543
No 228
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=22.50 E-value=1.1e+02 Score=23.86 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=29.8
Q ss_pred cccCcchHHHHHHHHHH-hhhcC-CCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 027911 45 GPVEDDMANIIVAQLLY-LDAVD-PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 45 G~I~~~~~~~l~~~L~~-l~~~~-~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~ 102 (217)
+.++-+....+-+.+.. ++..+ -...-.|.+.|||=+= .-....+..+..+.+|.+.
T Consensus 46 ~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~R-pL~~~~~f~r~~G~~v~V~ 104 (154)
T PRK00092 46 GGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDR-PLKKARDFRRFIGREVKVK 104 (154)
T ss_pred CCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCeEEEE
Confidence 34666655555555422 33222 2366799999999651 1112234445555555544
No 229
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=22.33 E-value=2.7e+02 Score=24.97 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEcCCCCcH---HHHHHHHHHHHhhC--CCcEEEEec
Q 027911 52 ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSV---TAGMAIFDTIRHIR--PDVSTVCVG 105 (217)
Q Consensus 52 ~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v---~~~~~I~~~I~~~~--~pV~t~v~g 105 (217)
.+.+...|+.+..++.++.|. +|.+||.. .-+..|.++.+.+. +|+++...|
T Consensus 295 ~~~~~~al~~l~~dp~vd~il--v~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g 351 (386)
T TIGR01016 295 AERVREALKLVLSDKSVKVVF--INIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEG 351 (386)
T ss_pred HHHHHHHHHHHHcCCCCCEEE--EECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 345555565556666666666 46556643 23455666666665 787554444
No 230
>PRK14645 hypothetical protein; Provisional
Probab=21.77 E-value=1.6e+02 Score=23.16 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=42.8
Q ss_pred hhccccccccCCCC-CCcccchhhhHHHhhhcCcEEEEcc----ccCcchHHHHHHHHHH-hhhcCC-CCceEEEEcCCC
Q 027911 7 GKGYGLYGEQGGGP-PPMLLGRFQNVLSQLFQHRIIRCGG----PVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPG 79 (217)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~vI~i~G----~I~~~~~~~l~~~L~~-l~~~~~-~~~I~l~InSpG 79 (217)
+.||.+||=.+-.. +++.+ + |+|+. .|+-+....+-+.|.. ++..+. ...-+|.++|||
T Consensus 21 ~~G~elvdve~~~~~~~~il-------------r-V~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 21 PLGYEVLEVQVQRSGGKRIV-------------L-VRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HcCCEEEEEEEEeCCCCeEE-------------E-EEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 45788888766432 22321 2 55553 3777666666655533 333222 456789999999
Q ss_pred CcHHHHHHHHHHHHhhCCCcEE
Q 027911 80 GSVTAGMAIFDTIRHIRPDVST 101 (217)
Q Consensus 80 G~v~~~~~I~~~I~~~~~pV~t 101 (217)
=+ ..-....+..+..+.+|.+
T Consensus 87 ld-RpL~~~~df~r~~G~~v~v 107 (154)
T PRK14645 87 PK-RPLFTARHFERFAGLKAKV 107 (154)
T ss_pred CC-CCCCCHHHHHHhCCCEEEE
Confidence 44 1112234445555555444
No 231
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=21.74 E-value=1.9e+02 Score=25.64 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=41.1
Q ss_pred cCCCCCCcccchhhhHHHh-hhcCcEEEEccccCcchHHHHHHHHHHhhhcCCCCceEEEEcCCCCcHHHHHH
Q 027911 16 QGGGPPPMLLGRFQNVLSQ-LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA 87 (217)
Q Consensus 16 ~~~~~~~~~~~~~~~~~s~-~~~~~vI~i~G~I~~~~~~~l~~~L~~l~~~~~~~~I~l~InSpGG~v~~~~~ 87 (217)
++|.-++.-.+.|-+.+.+ +-+..++.+.|.+-+........+|...-+ ...+.+.+++.|....+++.
T Consensus 107 ~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~---~~g~~vilD~Sg~~L~~~L~ 176 (310)
T COG1105 107 PGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILR---QQGAKVILDTSGEALLAALE 176 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHH---hcCCeEEEECChHHHHHHHc
Confidence 3334444447777777777 446778999997665543333333322221 13677888998876655443
No 232
>COG1160 Predicted GTPases [General function prediction only]
Probab=21.06 E-value=2.8e+02 Score=25.95 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=34.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHHhhCCCcEEEEe
Q 027911 66 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 104 (217)
Q Consensus 66 ~~~~~I~l~InSpGG~v~~~~~I~~~I~~~~~pV~t~v~ 104 (217)
...+.|.+.+|.-=|-..+-..+.+.|+..++||+.+++
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvN 120 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVN 120 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 346789999999999999999999999988899888775
No 233
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=20.72 E-value=2.1e+02 Score=18.86 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCHHHHHhhhCCCcccCHHHHH
Q 027911 162 NGYLSYHTGQTLEKINEDTDRDFFMSAEEAK 192 (217)
Q Consensus 162 ~~~~a~~tg~~~~~i~~~~~~~~~lta~EA~ 192 (217)
..-+++..|++...+..+..+...++.+.+.
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~ 51 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMAL 51 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 3446888888888888887776666666654
No 234
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.25 E-value=1e+02 Score=24.38 Aligned_cols=30 Identities=13% Similarity=-0.018 Sum_probs=25.9
Q ss_pred HHHhcCCCHHHHHhhhCCCcccCHHHHHHc
Q 027911 165 LSYHTGQTLEKINEDTDRDFFMSAEEAKDY 194 (217)
Q Consensus 165 ~a~~tg~~~~~i~~~~~~~~~lta~EA~~~ 194 (217)
+|+..|+++..+.....+...+++++|.++
T Consensus 27 IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 27 IADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred HHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 488899999999888888888899999774
No 235
>PRK14646 hypothetical protein; Provisional
Probab=20.23 E-value=2e+02 Score=22.64 Aligned_cols=81 Identities=11% Similarity=0.014 Sum_probs=43.7
Q ss_pred hhccccccccC-CCCCCcccchhhhHHHhhhcCcEEEEcc----ccCcchHHHHHHHHHH-hhhcC-CCCceEEEEcCCC
Q 027911 7 GKGYGLYGEQG-GGPPPMLLGRFQNVLSQLFQHRIIRCGG----PVEDDMANIIVAQLLY-LDAVD-PNKDIIMYLNSPG 79 (217)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~vI~i~G----~I~~~~~~~l~~~L~~-l~~~~-~~~~I~l~InSpG 79 (217)
..||.+||=++ +..++|.+ | |+|+. .|+-+....+-+.|.. ++..+ -...-+|.++|||
T Consensus 19 ~~G~eLvdve~~~~~~~~~L-------------r-V~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPG 84 (155)
T PRK14646 19 EFDLKICSLNIQTNQNPIVI-------------K-IIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQG 84 (155)
T ss_pred HcCCEEEEEEEEeCCCCeEE-------------E-EEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCC
Confidence 34688888664 33344431 2 55542 3666666666555533 33322 2466789999999
Q ss_pred CcHHHHHHHHHHHHhhCCCcEEE
Q 027911 80 GSVTAGMAIFDTIRHIRPDVSTV 102 (217)
Q Consensus 80 G~v~~~~~I~~~I~~~~~pV~t~ 102 (217)
=+= .-...-+..+..+.+|.+.
T Consensus 85 ldR-pL~~~~df~r~~G~~v~V~ 106 (155)
T PRK14646 85 VSD-ELTSERDFKTFKGFPVNVE 106 (155)
T ss_pred CCC-cCCCHHHHHHhCCCEEEEE
Confidence 651 1112344555555555443
No 236
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=20.16 E-value=2.4e+02 Score=19.20 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCHHHHHhhhCCCcccCHH
Q 027911 161 LNGYLSYHTGQTLEKINEDTDRDFFMSAE 189 (217)
Q Consensus 161 ~~~~~a~~tg~~~~~i~~~~~~~~~lta~ 189 (217)
+.+.+++.+|.+..++.+++..... |++
T Consensus 46 ~~~~lAk~~G~t~~~l~~~~~~Gki-t~~ 73 (75)
T TIGR02675 46 ALQALAKAMGVTRGELRKMLSDGKL-TAD 73 (75)
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCC-ccc
Confidence 5556789999999999998877644 554
Done!