Query 027912
Match_columns 217
No_of_seqs 110 out of 1214
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 4.4E-29 9.6E-34 203.4 22.5 154 30-184 31-185 (223)
2 COG0586 DedA Uncharacterized m 99.9 2.2E-25 4.7E-30 180.5 15.2 139 52-191 20-170 (208)
3 PRK10847 hypothetical protein; 99.9 9.7E-24 2.1E-28 172.3 14.9 151 37-189 18-182 (219)
4 PF09335 SNARE_assoc: SNARE as 99.9 1.8E-23 3.9E-28 155.4 14.1 119 65-183 1-122 (123)
5 COG1238 Predicted membrane pro 99.7 1.3E-16 2.7E-21 123.2 15.3 150 34-187 6-158 (161)
6 KOG3140 Predicted membrane pro 99.5 5.8E-13 1.3E-17 111.0 10.9 153 44-196 91-245 (275)
7 PF06695 Sm_multidrug_ex: Puta 97.8 0.00045 9.7E-09 51.2 10.3 98 78-176 14-120 (121)
8 PRK00523 hypothetical protein; 83.4 6.5 0.00014 26.2 5.9 32 81-112 5-36 (72)
9 PRK01844 hypothetical protein; 83.0 5.4 0.00012 26.6 5.4 33 80-112 3-35 (72)
10 COG2426 Predicted membrane pro 80.2 22 0.00048 26.5 9.3 105 78-183 18-137 (142)
11 COG3763 Uncharacterized protei 79.8 9.9 0.00021 25.2 5.8 32 80-111 3-34 (71)
12 PRK10847 hypothetical protein; 77.7 12 0.00025 30.5 7.1 66 122-187 17-98 (219)
13 COG0586 DedA Uncharacterized m 76.7 11 0.00024 30.4 6.6 71 31-109 97-168 (208)
14 PF01148 CTP_transf_1: Cytidyl 75.6 30 0.00065 28.1 9.2 28 81-108 129-156 (259)
15 PRK11677 hypothetical protein; 73.6 9.1 0.0002 28.8 5.0 23 85-107 4-26 (134)
16 PF06695 Sm_multidrug_ex: Puta 73.3 34 0.00073 25.1 9.9 46 44-96 71-120 (121)
17 PF07155 ECF-ribofla_trS: ECF- 72.8 6.1 0.00013 30.4 4.1 33 66-98 37-69 (169)
18 COG1238 Predicted membrane pro 72.2 23 0.0005 27.5 7.1 66 125-191 12-82 (161)
19 PF09335 SNARE_assoc: SNARE as 71.8 27 0.00059 24.8 7.2 42 61-102 78-121 (123)
20 PF03672 UPF0154: Uncharacteri 71.0 13 0.00028 24.3 4.5 26 86-111 2-27 (64)
21 PRK09609 hypothetical protein; 70.4 24 0.00051 30.4 7.3 24 163-186 171-194 (312)
22 TIGR02359 thiW thiW protein. L 69.3 51 0.0011 25.5 10.5 32 67-98 34-65 (160)
23 PRK11624 cdsA CDP-diglyceride 69.3 3.2 7E-05 35.3 2.0 38 84-121 154-191 (285)
24 PRK13661 hypothetical protein; 67.7 10 0.00023 30.0 4.4 33 66-98 39-71 (182)
25 COG0575 CdsA CDP-diglyceride s 67.0 4 8.6E-05 34.2 2.0 28 84-111 136-163 (265)
26 PRK10527 hypothetical protein; 66.8 23 0.0005 26.3 5.8 51 54-129 14-65 (125)
27 KOG1109 Vacuole membrane prote 66.6 32 0.0007 30.5 7.5 89 85-173 213-320 (440)
28 TIGR00261 traB pheromone shutd 64.4 1.1E+02 0.0023 27.4 13.2 43 4-47 237-280 (380)
29 PRK13461 F0F1 ATP synthase sub 62.4 18 0.00039 27.6 4.8 36 1-36 1-36 (159)
30 PRK11469 hypothetical protein; 56.1 1E+02 0.0022 24.5 10.1 111 70-187 49-160 (188)
31 COG0398 Uncharacterized conser 55.2 1.2E+02 0.0025 24.9 12.4 85 26-111 30-116 (223)
32 PF06295 DUF1043: Protein of u 49.3 36 0.00078 25.2 4.4 22 87-108 2-23 (128)
33 PRK09395 actP acetate permease 47.4 2.4E+02 0.0051 26.2 15.3 27 153-183 175-201 (551)
34 PF12822 DUF3816: Protein of u 44.9 32 0.00069 26.3 3.7 32 66-97 30-61 (172)
35 PF01810 LysE: LysE type trans 40.6 1.2E+02 0.0026 23.4 6.4 30 161-190 136-165 (191)
36 TIGR03321 alt_F1F0_F0_B altern 40.6 57 0.0012 26.9 4.7 34 1-34 1-34 (246)
37 TIGR03750 conj_TIGR03750 conju 40.5 1.4E+02 0.0031 21.7 8.6 12 120-131 83-94 (111)
38 COG2832 Uncharacterized protei 39.7 88 0.0019 23.0 4.9 51 56-131 16-67 (119)
39 PF06305 DUF1049: Protein of u 38.4 1E+02 0.0023 19.5 5.3 9 119-127 56-64 (68)
40 COG3105 Uncharacterized protei 38.1 98 0.0021 23.2 5.0 25 83-107 7-31 (138)
41 PF11990 DUF3487: Protein of u 37.8 1.6E+02 0.0036 21.6 8.4 12 120-131 86-97 (121)
42 PLN02594 phosphatidate cytidyl 37.4 2.8E+02 0.006 24.4 8.5 41 79-121 123-163 (342)
43 PLN02953 phosphatidate cytidyl 37.1 22 0.00048 31.6 1.8 28 84-111 271-298 (403)
44 COG2966 Uncharacterized conser 35.4 2.6E+02 0.0057 23.3 10.1 33 78-110 144-176 (250)
45 COG0591 PutP Na+/proline sympo 35.2 3.6E+02 0.0077 24.7 14.0 123 67-193 56-185 (493)
46 PF07332 DUF1469: Protein of u 34.0 1.8E+02 0.0038 20.8 7.9 27 79-105 70-96 (121)
47 PF11139 DUF2910: Protein of u 30.9 2.7E+02 0.006 22.1 12.6 18 118-135 180-197 (214)
48 PRK08476 F0F1 ATP synthase sub 30.5 1.2E+02 0.0027 22.6 4.8 42 1-42 3-44 (141)
49 PRK14474 F0F1 ATP synthase sub 30.0 1.1E+02 0.0024 25.4 4.8 34 1-34 1-34 (250)
50 PRK12821 aspartyl/glutamyl-tRN 29.5 80 0.0017 28.8 4.0 28 67-94 98-125 (477)
51 COG0385 Predicted Na+-dependen 28.6 3.9E+02 0.0085 23.2 10.6 22 87-108 229-250 (319)
52 PRK14400 membrane protein; Pro 28.1 1.3E+02 0.0029 24.2 4.8 34 82-115 6-40 (201)
53 COG2839 Uncharacterized protei 27.8 2.8E+02 0.0062 21.3 7.8 19 61-79 20-39 (160)
54 PRK02898 cobalt transport prot 27.8 1.6E+02 0.0035 20.9 4.6 27 82-108 67-93 (100)
55 TIGR02005 PTS-IIBC-alpha PTS s 26.7 2E+02 0.0044 26.8 6.3 51 11-64 177-227 (524)
56 COG4615 PvdE ABC-type sideroph 26.5 2.2E+02 0.0048 25.9 6.2 22 138-159 105-126 (546)
57 PF08019 DUF1705: Domain of un 26.1 2.9E+02 0.0063 20.9 9.7 26 3-28 13-38 (156)
58 TIGR00814 stp serine transport 25.0 2.5E+02 0.0054 25.0 6.4 71 85-156 34-104 (397)
59 TIGR00937 2A51 chromate transp 24.7 4.9E+02 0.011 22.9 11.3 61 44-104 235-296 (368)
60 PF02417 Chromate_transp: Chro 24.7 1.9E+02 0.0041 22.2 5.0 61 127-188 38-100 (169)
61 PRK10255 PTS system N-acetyl g 24.6 2.3E+02 0.0049 27.2 6.3 50 12-64 137-186 (648)
62 PRK14407 membrane protein; Pro 24.4 1.2E+02 0.0027 24.7 4.0 32 82-113 6-38 (219)
63 PF11808 DUF3329: Domain of un 23.8 1.4E+02 0.0031 20.5 3.7 18 1-18 1-18 (90)
64 TIGR02840 spore_YtaF putative 23.6 3.9E+02 0.0084 21.4 11.4 48 135-187 132-179 (206)
65 PF14163 SieB: Superinfection 23.2 3.3E+02 0.0071 20.4 7.6 30 64-93 14-47 (151)
66 COG4720 Predicted membrane pro 23.2 1E+02 0.0022 24.3 3.1 33 68-100 41-73 (177)
67 PF09946 DUF2178: Predicted me 23.2 2.9E+02 0.0063 19.8 6.1 43 88-136 31-73 (111)
68 PF11337 DUF3139: Protein of u 23.1 2.5E+02 0.0053 19.0 5.6 13 34-47 37-49 (85)
69 PF02417 Chromate_transp: Chro 23.1 3.5E+02 0.0076 20.7 11.7 62 44-105 34-97 (169)
70 PF10031 DUF2273: Small integr 23.0 1.9E+02 0.0042 17.7 4.7 24 77-105 26-49 (51)
71 PRK14473 F0F1 ATP synthase sub 22.8 2E+02 0.0042 22.0 4.8 35 2-36 5-39 (164)
72 COG4858 Uncharacterized membra 22.6 2.8E+02 0.006 22.3 5.4 24 160-183 161-184 (226)
73 PRK00220 putative glycerol-3-p 21.9 2.3E+02 0.005 22.7 5.1 33 85-117 7-40 (198)
74 PRK10862 SoxR reducing system 21.3 2E+02 0.0044 22.0 4.5 23 86-108 105-127 (154)
75 PF11286 DUF3087: Protein of u 20.8 2.6E+02 0.0056 21.8 4.9 58 84-141 49-117 (165)
76 PF09605 Trep_Strep: Hypotheti 20.5 1.2E+02 0.0026 24.0 3.1 29 81-109 155-183 (186)
77 COG0170 SEC59 Dolichol kinase 20.3 1.3E+02 0.0027 24.5 3.3 37 82-120 114-150 (216)
78 PF12072 DUF3552: Domain of un 20.0 1.8E+02 0.004 23.1 4.2 27 84-110 3-29 (201)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=203.39 Aligned_cols=154 Identities=34% Similarity=0.699 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHhccCChHHHH-HHHHHHHHhhhccChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 027912 30 VEKILKDFLTWVDQDLGPWGPLV-LAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 30 ~~~~l~~l~~~~~~~~g~~~~~~-~~~~~~~~~~~~iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~ 108 (217)
.++..+++++|++ +++.++++. +++......++++|.+++.+.+|+.||+++|.+++++|+++|++++|+++|+++++
T Consensus 31 ~~~~~~~l~~~i~-~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~ 109 (223)
T COG0398 31 LLLDPETLREWIQ-AYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD 109 (223)
T ss_pred hccCHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3556788999999 799999999 45555555566699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHhcccHHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhh
Q 027912 109 FVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 184 (217)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~ 184 (217)
..+++.+++++.++++++.+|+|++.+++.|++|++|++++|+++|.+++++++|.+++.+|+.|.++.|+++|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 110 WVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9988888889999999999999999999999999999999999999999999999999999999999999999973
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.93 E-value=2.2e-25 Score=180.49 Aligned_cols=139 Identities=22% Similarity=0.415 Sum_probs=125.4
Q ss_pred HHHHHHHHH---hhhccChHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhc----CchH
Q 027912 52 VLAVAYIPL---TILAVPASVLTLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK----DYPQ 119 (217)
Q Consensus 52 ~~~~~~~~~---~~~~iP~~~~~~~~g~~-----~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~----~~~~ 119 (217)
.|...+.+. ..+|+|+|++++.+|+. .+++...+.+.+|+.+||.+.|++||++|++..++..+ ++++
T Consensus 20 ~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~ 99 (208)
T COG0586 20 VFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKK 99 (208)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHH
Confidence 344445555 56789999999999998 56889999999999999999999999999988876655 5689
Q ss_pred HHHHHHHHhcccHHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 027912 120 FRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 191 (217)
Q Consensus 120 ~~~~~~~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~~~~~ 191 (217)
.+|.+++++|||.+.++++|++|++| ++++++||++|||+++|...+.+|.++|..++.+.|+.+++..+.
T Consensus 100 l~~a~~~f~r~G~~~vf~~RFip~vR-t~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~~ 170 (208)
T COG0586 100 LDKAELLFERHGLFAIFLGRFIPGVR-TLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDV 170 (208)
T ss_pred HHHHHHHHHHcCchhhhhhcccchhH-hhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999 899999999999999999999999999999999999999987663
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.91 E-value=9.7e-24 Score=172.26 Aligned_cols=151 Identities=17% Similarity=0.297 Sum_probs=126.2
Q ss_pred HHHHHHhccCChHHH-HHHHHHHHH---hhhccChHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027912 37 FLTWVDQDLGPWGPL-VLAVAYIPL---TILAVPASVLTLGGGYLF-------GLPVGFVADSIGATIGAGAAFLLGRTI 105 (217)
Q Consensus 37 l~~~~~~~~g~~~~~-~~~~~~~~~---~~~~iP~~~~~~~~g~~~-------g~~~~~l~~~~g~~lG~~~~y~igr~~ 105 (217)
+.++++ +++.+++. ++...+.+. ..+++|+|++++.+|... +++..++++++|+++||.+.|++||+.
T Consensus 18 ~~~~~~-~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 18 LAELVA-QYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566 78887765 444444443 235589999999999774 356788999999999999999999999
Q ss_pred ChHHHHHH---hcCchHHHHHHHHHhcccHHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHH
Q 027912 106 GKPFVISK---LKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVG 182 (217)
Q Consensus 106 g~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G 182 (217)
|++...++ ..++++.+|.+++++|||.+.++++|++|++| +++|++||++|||+++|...+.+|.++|+..+++.|
T Consensus 97 G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~G 175 (219)
T PRK10847 97 GEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAG 175 (219)
T ss_pred CHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 98876532 22356789999999999999999999999999 789999999999999999999999999999999999
Q ss_pred hhhcccc
Q 027912 183 TTLKDLS 189 (217)
Q Consensus 183 ~~~~~~~ 189 (217)
+.+++..
T Consensus 176 y~~g~~~ 182 (219)
T PRK10847 176 YFFGTLP 182 (219)
T ss_pred HHHcCCH
Confidence 9998753
No 4
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.91 E-value=1.8e-23 Score=155.40 Aligned_cols=119 Identities=36% Similarity=0.695 Sum_probs=110.6
Q ss_pred cChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHH---HHHHHhcccHHHHHHHhhc
Q 027912 65 VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 141 (217)
Q Consensus 65 iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~---~~~~~~~~g~~~i~l~r~~ 141 (217)
+|++++++.+|..+|++.+++++.+|+++|+.++|+++|+.+++..+++..++++.++ .+++++|||.+.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997666666655555555 8999999999999999999
Q ss_pred CCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHh
Q 027912 142 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (217)
Q Consensus 142 P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~ 183 (217)
|++|++++|+++|++|+|+++|+.++++|+.||..++++.|+
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=123.24 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=124.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhhhccChHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 027912 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 112 (217)
Q Consensus 34 l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~iP~~~~~~~~g~~-~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~ 112 (217)
.|+..++..+++++ ..+|+..+.+.+++|+|+|++.+..... ..++.-.+++.+|+++|++++|++||...+...++
T Consensus 6 ~~~~~~~~~~~~a~--~~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 6 YDWTLSLMSQAYAY--AGLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 44444555545565 4467888999999999999977765555 88999999999999999999999999998776654
Q ss_pred Hhc-CchHHHHHHH-HHhcccHHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhcc
Q 027912 113 KLK-DYPQFRSVAL-AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 187 (217)
Q Consensus 113 ~~~-~~~~~~~~~~-~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~ 187 (217)
+.. ++++.++.++ +.+|+|.+.++++-+.| +| ++.|.+||..|+|+.+|+...++|+..+-...++.....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~~ 158 (161)
T COG1238 84 WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGGE 158 (161)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 332 3567777776 78999999999999977 89 99999999999999999999999999999999988876654
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.46 E-value=5.8e-13 Score=111.05 Aligned_cols=153 Identities=29% Similarity=0.509 Sum_probs=129.1
Q ss_pred ccCChHHHHHHHHHHHHhhhccChHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHH
Q 027912 44 DLGPWGPLVLAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS 122 (217)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP~~~-~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~ 122 (217)
.+.......++........+++|+.. ..+.+|..+|++.|.+.....+.+|++++|.+++.+||+.+.+...++.+.-+
T Consensus 91 ~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~ 170 (275)
T KOG3140|consen 91 TYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQ 170 (275)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 55555677778888888899999654 77889999999999999999999999999999999999988876665333333
Q ss_pred HHHHHhccc-HHHHHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhccccccccCCc
Q 027912 123 VALAIQRSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWN 196 (217)
Q Consensus 123 ~~~~~~~~g-~~~i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~~~~~~~~~~ 196 (217)
.+...+|++ +....+.|.+|..|+.+.|+++++.++|++.|+.++.+|.+|.++++.-.|....++.+..+..+
T Consensus 171 ~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~ 245 (275)
T KOG3140|consen 171 QDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFS 245 (275)
T ss_pred HHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccC
Confidence 333345555 66689999999999999999999999999999999999999999999999999988777666544
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.77 E-value=0.00045 Score=51.21 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHHhcC-chHHHHHHHHHhcccHHHHHHHhhcCCCC---hhh
Q 027912 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF-----VISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNM 148 (217)
Q Consensus 78 ~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~-----~~~~~~~-~~~~~~~~~~~~~~g~~~i~l~r~~P~~p---~~~ 148 (217)
++++.+.+++.+|+.+.....++.-++.-+-. .++..++ ++|.++-++..+|||++-+.+.-.+| +| ...
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 56889999999999998888777777654322 1111111 24566677889999999888877777 56 566
Q ss_pred HHHHhhcCCCChhHHHHHHHHhhHHHHH
Q 027912 149 LNYLLSVTPVPLLEYMLASWIGMMPITL 176 (217)
Q Consensus 149 ~~~~aG~~~i~~~~f~~~~~ig~~p~~~ 176 (217)
-+.+|-..+++.++=+.+..+|.....+
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999876553
No 8
>PRK00523 hypothetical protein; Provisional
Probab=83.36 E-value=6.5 Score=26.19 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 027912 81 PVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 112 (217)
Q Consensus 81 ~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~ 112 (217)
+..+++.+++..+|...+|+++|+.-++.+++
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778999999999999886655543
No 9
>PRK01844 hypothetical protein; Provisional
Probab=82.99 E-value=5.4 Score=26.57 Aligned_cols=33 Identities=12% Similarity=0.325 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 027912 80 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 112 (217)
Q Consensus 80 ~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~ 112 (217)
.+...++.+++..+|...+|+++|+.-++.+++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778889999999999999886655544
No 10
>COG2426 Predicted membrane protein [Function unknown]
Probab=80.15 E-value=22 Score=26.50 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---HHhcC-----chHHHHH----HHHHhcccHHHHHHHhhcCCCC
Q 027912 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI---SKLKD-----YPQFRSV----ALAIQRSGFKIVLLLRLVPLLP 145 (217)
Q Consensus 78 ~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~---~~~~~-----~~~~~~~----~~~~~~~g~~~i~l~r~~P~~p 145 (217)
++++.+...+.+|...=+.+.+.+-+...+-..+ +++++ +...+|. ....||+|+.-+.+.-.+| .|
T Consensus 18 ~~~~Eal~~silGvL~l~~lL~~~l~~id~im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIP-LP 96 (142)
T COG2426 18 LSPLEALLLSILGVLPLSLLLPLLLDPIDRIMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIP-LP 96 (142)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeecc-CC
Confidence 6788888888888766666666666655432111 11111 0122333 3347889988776666677 56
Q ss_pred h---hhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHh
Q 027912 146 F---NMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (217)
Q Consensus 146 ~---~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~ 183 (217)
- .--+++|-..+++.++-+.+..+|-.....+.+..+.
T Consensus 97 ~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s~ 137 (142)
T COG2426 97 GTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPSI 137 (142)
T ss_pred CccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhcc
Confidence 3 2345667788999999888888887766655555443
No 11
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.81 E-value=9.9 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 027912 80 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (217)
Q Consensus 80 ~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~ 111 (217)
.|.+.+...++-..|-..+|+++|+.-.+.+.
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777778888889999987554443
No 12
>PRK10847 hypothetical protein; Provisional
Probab=77.68 E-value=12 Score=30.50 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHhcccHHH---HHHHh-------hcCCCChhhHHHHhhcC------CCChhHHHHHHHHhhHHHHHHHHHHHhhh
Q 027912 122 SVALAIQRSGFKI---VLLLR-------LVPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 185 (217)
Q Consensus 122 ~~~~~~~~~g~~~---i~l~r-------~~P~~p~~~~~~~aG~~------~i~~~~f~~~~~ig~~p~~~~~~~~G~~~ 185 (217)
.+++..+++|.+. +++.- ..|++|.+..-.++|.. .+++..-++.+.+|......+..++|...
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777543 33322 24778988888888843 26677778888999999999999999987
Q ss_pred cc
Q 027912 186 KD 187 (217)
Q Consensus 186 ~~ 187 (217)
++
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 65
No 13
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=76.73 E-value=11 Score=30.40 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHhhhccChHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 027912 31 EKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF 109 (217)
Q Consensus 31 ~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~iP~~~~~~~~g~~-~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~ 109 (217)
++.+|+..+|++ +||....+..=++-.+.++.| ..+|+. +.+..=.+.+.+|+.+=+.+..+.|+.+|+..
T Consensus 97 ~~~l~~a~~~f~-r~G~~~vf~~RFip~vRt~ip-------~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~ 168 (208)
T COG0586 97 RKKLDKAELLFE-RHGLFAIFLGRFIPGVRTLVP-------IVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVI 168 (208)
T ss_pred HHHHHHHHHHHH-HcCchhhhhhcccchhHhhhh-------HhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 456788899999 789876554333333333433 355655 77788888899999999999999998888643
No 14
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=75.58 E-value=30 Score=28.11 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 027912 81 PVGFVADSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 81 ~~~~l~~~~g~~lG~~~~y~igr~~g~~ 108 (217)
....+........||..+|.+||++||.
T Consensus 129 ~~~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 129 PPLALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445567777899999999999999987
No 15
>PRK11677 hypothetical protein; Provisional
Probab=73.62 E-value=9.1 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCh
Q 027912 85 VADSIGATIGAGAAFLLGRTIGK 107 (217)
Q Consensus 85 l~~~~g~~lG~~~~y~igr~~g~ 107 (217)
++..+|-++|..++|+++|...+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 45667889999999999997553
No 16
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=73.35 E-value=34 Score=25.12 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=29.3
Q ss_pred ccCChHHHHHHHHHHHHhhhccC--hHHHHHHHHhhhh--hHHHHHHHHHHHHHHHH
Q 027912 44 DLGPWGPLVLAVAYIPLTILAVP--ASVLTLGGGYLFG--LPVGFVADSIGATIGAG 96 (217)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP--~~~~~~~~g~~~g--~~~~~l~~~~g~~lG~~ 96 (217)
+++.+|+.+|+ .+|+| +.....+.+..+| ...+++...+|..+++.
T Consensus 71 kyg~~GL~lFV-------aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 71 KYGFWGLALFV-------AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHhHHHHHHHH-------hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 56766655433 34666 3445566666655 67788888888877764
No 17
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=72.82 E-value=6.1 Score=30.44 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.9
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027912 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (217)
Q Consensus 66 P~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~ 98 (217)
|++....++|..+||..|.++..+|..++|.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999844
No 18
>COG1238 Predicted membrane protein [Function unknown]
Probab=72.18 E-value=23 Score=27.50 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHhcccHHHHHH-----HhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 027912 125 LAIQRSGFKIVLL-----LRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 191 (217)
Q Consensus 125 ~~~~~~g~~~i~l-----~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~~~~~ 191 (217)
...++++...+++ +-+.| +|+++.-...-..+.+...+...+.+|....++.-.++|+...+..+.
T Consensus 12 ~~~~~~a~~~Lf~vaF~eat~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 12 LMSQAYAYAGLFIVAFLEATLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3455666554443 34678 677988888888889999999999999999999999999999886555
No 19
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=71.79 E-value=27 Score=24.82 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=30.0
Q ss_pred hhhc-cChHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 027912 61 TILA-VPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLG 102 (217)
Q Consensus 61 ~~~~-iP~~~~~~~~g~~-~g~~~~~l~~~~g~~lG~~~~y~ig 102 (217)
-+.| +|.+++...+|.. ..++.-++.+.+|...-+.+.-.+|
T Consensus 78 ~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 78 RFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445 7999999888876 5667777777777777666655554
No 20
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=71.03 E-value=13 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhChHHHH
Q 027912 86 ADSIGATIGAGAAFLLGRTIGKPFVI 111 (217)
Q Consensus 86 ~~~~g~~lG~~~~y~igr~~g~~~~~ 111 (217)
+..++..+|..++|+++|+.-++.++
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLK 27 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999987655444
No 21
>PRK09609 hypothetical protein; Provisional
Probab=70.41 E-value=24 Score=30.43 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=11.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhc
Q 027912 163 YMLASWIGMMPITLALVYVGTTLK 186 (217)
Q Consensus 163 f~~~~~ig~~p~~~~~~~~G~~~~ 186 (217)
++.+..+....-.+++...|....
T Consensus 171 ~i~a~ii~~~i~l~i~~~~~~~~~ 194 (312)
T PRK09609 171 WIAALIILVIIILFIYFVVGFLDP 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCh
Confidence 444444544555555555555433
No 22
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=69.32 E-value=51 Score=25.55 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027912 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (217)
Q Consensus 67 ~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~ 98 (217)
+++..+++|+.+||+++.+...+++.+++...
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 66788899999999999999999998888754
No 23
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=69.30 E-value=3.2 Score=35.26 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHH
Q 027912 84 FVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 121 (217)
Q Consensus 84 ~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~ 121 (217)
.+...+-...+|+.+|+.||.+||+.+.++.+-++..|
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwE 191 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWE 191 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchh
Confidence 34445557889999999999999876555554334443
No 24
>PRK13661 hypothetical protein; Provisional
Probab=67.72 E-value=10 Score=30.01 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 027912 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (217)
Q Consensus 66 P~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~ 98 (217)
|++....+.+..+||..|+++..+|..++|.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 457788889999999999999999999999874
No 25
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=66.96 E-value=4 Score=34.25 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 027912 84 FVADSIGATIGAGAAFLLGRTIGKPFVI 111 (217)
Q Consensus 84 ~l~~~~g~~lG~~~~y~igr~~g~~~~~ 111 (217)
.+...++...+|+.+|+.||++|++...
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~ 163 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLA 163 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCC
Confidence 4556778899999999999999987533
No 26
>PRK10527 hypothetical protein; Provisional
Probab=66.83 E-value=23 Score=26.29 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHhhhc-cChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhc
Q 027912 54 AVAYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR 129 (217)
Q Consensus 54 ~~~~~~~~~~~-iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (217)
+.+-++..++| +|.+++.+++.+ .++| ++++..+++.+++.+....+..++
T Consensus 14 ~~LG~iGi~LPlLPTTPFlLLAa~-----------------------cfaR--sSpR~~~WL~~h~~fGp~i~~w~~ 65 (125)
T PRK10527 14 VVLGTLGVVLPLLPTTPFILLAAW-----------------------CFAR--SSPRFHAWLLYRSWFGSYLRHWQQ 65 (125)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHH-----------------------HHHc--CCHHHHHHHHcCchhhHHHHHHHH
Confidence 33444556667 899988877553 3444 556666677666665544444443
No 27
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=66.64 E-value=32 Score=30.52 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH----HHHH---Hh---c-C----chHHHH----HHHHHhcccHHHHHHHhhcCCCC
Q 027912 85 VADSIGATIGAGAAFLLGRTIGKP----FVIS---KL---K-D----YPQFRS----VALAIQRSGFKIVLLLRLVPLLP 145 (217)
Q Consensus 85 l~~~~g~~lG~~~~y~igr~~g~~----~~~~---~~---~-~----~~~~~~----~~~~~~~~g~~~i~l~r~~P~~p 145 (217)
++--.|.++|..-.|+..|...-+ .-+. .. . + ..+.+| +++..+|-|+.-+.+..-+|=.-
T Consensus 213 ilwg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPl 292 (440)
T KOG1109|consen 213 ILWGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPL 292 (440)
T ss_pred hhhccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcc
Confidence 344567899999999999864210 0010 00 0 0 012223 33444556788777777777444
Q ss_pred hhhHHHHhhcCCCChhHHHHHHHHhhHH
Q 027912 146 FNMLNYLLSVTPVPLLEYMLASWIGMMP 173 (217)
Q Consensus 146 ~~~~~~~aG~~~i~~~~f~~~~~ig~~p 173 (217)
+|...+.+|....|++.|+.++++|+..
T Consensus 293 fdlaGitcghflvpfw~ffGaTLigKai 320 (440)
T KOG1109|consen 293 FDLAGITCGHFLVPFWTFFGATLIGKAI 320 (440)
T ss_pred hhhcccccccccchHHHHhhHHHHHHHH
Confidence 6899999999999999999999999864
No 28
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=64.38 E-value=1.1e+02 Score=27.36 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=28.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHhccCC
Q 027912 4 TWGSALRITLLILLVAAVVTACFTL-PVEKILKDFLTWVDQDLGP 47 (217)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~l~~~~~~~~g~ 47 (217)
.+.|++..++.++++.+++...++. +.+.-.+.+..|+. -+|.
T Consensus 237 ~~~k~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~W~l-~ng~ 280 (380)
T TIGR00261 237 SFSKVLSYLIAISIILLFVMISFYLNGFEFLYKNLKLWIL-SNGI 280 (380)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHhH
Confidence 3447777777777777776344444 45666788888888 4454
No 29
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=62.37 E-value=18 Score=27.63 Aligned_cols=36 Identities=6% Similarity=0.227 Sum_probs=24.7
Q ss_pred CccchHhHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Q 027912 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKILKD 36 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 36 (217)
|+++|...+.-++-+++++.++--+.|.|..+.++.
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~ 36 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVIDS 36 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 889998776666666666666566667787766643
No 30
>PRK11469 hypothetical protein; Provisional
Probab=56.05 E-value=1e+02 Score=24.47 Aligned_cols=111 Identities=16% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhcccH-HHHHHHhhcCCCChhh
Q 027912 70 LTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGF-KIVLLLRLVPLLPFNM 148 (217)
Q Consensus 70 ~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~l~r~~P~~p~~~ 148 (217)
.+...|+..|-...-...-....+|..+-..+|-+.-.+..+ ++++.++ +..++... ..+.++-.+- +-.-.
T Consensus 49 ~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e~~~----~~~~~~~--~~~~~~~~~~~l~LaiAtS-iDAla 121 (188)
T PRK11469 49 LTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFR----GADDEDE--EPRRRHGFWLLVTTAIATS-LDAMA 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccccc--ccccCCCHHHHHHHHHHHH-HHHHH
Confidence 344445555544444444455666776666666554333222 1111110 00122232 3334443333 33345
Q ss_pred HHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhcc
Q 027912 149 LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 187 (217)
Q Consensus 149 ~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~ 187 (217)
+...+|..+.|.........+-+..-+..-.+.|+.+++
T Consensus 122 vGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~ 160 (188)
T PRK11469 122 VGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS 160 (188)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778776555555555444455555556665544
No 31
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=55.19 E-value=1.2e+02 Score=24.86 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=62.3
Q ss_pred HHcchHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhhhccChH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027912 26 FTLPVEKILKDFLTWVDQDLGPWG-PLVLAVAYIPLTILAVPAS-VLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGR 103 (217)
Q Consensus 26 ~~~~~~~~l~~l~~~~~~~~g~~~-~~~~~~~~~~~~~~~iP~~-~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr 103 (217)
.-....+.+++..+-.- ..++.. .++..+.......+..+-+ .--.+.|...|.+...+-+.+|+++.=.++=..+|
T Consensus 30 ~~~~~~~~l~~~i~~~g-~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr 108 (223)
T COG0398 30 VLLLDPETLREWIQAYG-ALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGR 108 (223)
T ss_pred HhccCHHHHHHHHHHcC-chHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44655666666555555 455555 8888888777877775544 46667888999999999999999999999999998
Q ss_pred HhChHHHH
Q 027912 104 TIGKPFVI 111 (217)
Q Consensus 104 ~~g~~~~~ 111 (217)
...++.+.
T Consensus 109 ~~~~~~~~ 116 (223)
T COG0398 109 DWVLKFVG 116 (223)
T ss_pred HHHHHHhc
Confidence 77654443
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.33 E-value=36 Score=25.21 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 027912 87 DSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 87 ~~~g~~lG~~~~y~igr~~g~~ 108 (217)
+++|.++|..++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4567788888999999887544
No 33
>PRK09395 actP acetate permease; Provisional
Probab=47.45 E-value=2.4e+02 Score=26.22 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=13.3
Q ss_pred hhcCCCChhHHHHHHHHhhHHHHHHHHHHHh
Q 027912 153 LSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (217)
Q Consensus 153 aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~ 183 (217)
...+++| +..+..+... -..+|+..|-
T Consensus 175 ~~~~gi~---~~~~ili~~~-i~~iYt~~GG 201 (551)
T PRK09395 175 QLLFGLN---YHVAVVLVGV-LMMVYVLFGG 201 (551)
T ss_pred HHHhCCC---HHHHHHHHHH-HHHHHHhhcc
Confidence 3445555 3444444333 4556666654
No 34
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=44.90 E-value=32 Score=26.27 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=24.0
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 027912 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (217)
Q Consensus 66 P~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~ 97 (217)
|..+...++|+.+||+.|.+...+...++...
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999888776666655
No 35
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=40.57 E-value=1.2e+02 Score=23.44 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 027912 161 LEYMLASWIGMMPITLALVYVGTTLKDLSD 190 (217)
Q Consensus 161 ~~f~~~~~ig~~p~~~~~~~~G~~~~~~~~ 190 (217)
..|..+..++...|...+.+.+....+...
T Consensus 136 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 165 (191)
T PF01810_consen 136 LVFILGIFLGSLLWFLLLALLGSRLRRKFS 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888899999999999998876443
No 36
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=40.56 E-value=57 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=22.6
Q ss_pred CccchHhHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 027912 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 34 (217)
|+++|...+.-++-+++++.++--+.|.|..+.+
T Consensus 1 M~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l 34 (246)
T TIGR03321 1 MLIDWFTVIAQLINFLILVWLLKRFLYRPILDAM 34 (246)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8899987766555555555555666667776554
No 37
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.51 E-value=1.4e+02 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=7.3
Q ss_pred HHHHHHHHhccc
Q 027912 120 FRSVALAIQRSG 131 (217)
Q Consensus 120 ~~~~~~~~~~~g 131 (217)
+++++.+.++++
T Consensus 83 ~r~l~~~~~~~~ 94 (111)
T TIGR03750 83 YRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHcC
Confidence 556666666665
No 38
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.67 E-value=88 Score=23.01 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=28.9
Q ss_pred HHHHHhhhc-cChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhccc
Q 027912 56 AYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 131 (217)
Q Consensus 56 ~~~~~~~~~-iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g 131 (217)
+-++..++| +|.+++.+++..+ +.| ++++.++++-+++.+.+..+..++++
T Consensus 16 LGIiGifLPlLPTTPFlLLaa~c-----------------------FaR--sSpRf~~WLl~~~~fg~~v~~~~e~~ 67 (119)
T COG2832 16 LGIIGIFLPLLPTTPFLLLAAAC-----------------------FAR--SSPRFHAWLLRHKYFGPYVRDWREGG 67 (119)
T ss_pred HHHHHhcCcccCCcHHHHHHHHH-----------------------HHc--CCcHHHHHHHcCchhhHHHHHHHHcC
Confidence 334556667 7888877765433 334 34455566655666555555555443
No 39
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.36 E-value=1e+02 Score=19.49 Aligned_cols=9 Identities=0% Similarity=0.335 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 027912 119 QFRSVALAI 127 (217)
Q Consensus 119 ~~~~~~~~~ 127 (217)
+.++.++-.
T Consensus 56 ~l~~le~e~ 64 (68)
T PF06305_consen 56 ELKKLEKEL 64 (68)
T ss_pred HHHHHHHHH
Confidence 444444433
No 40
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.15 E-value=98 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh
Q 027912 83 GFVADSIGATIGAGAAFLLGRTIGK 107 (217)
Q Consensus 83 ~~l~~~~g~~lG~~~~y~igr~~g~ 107 (217)
......+|-++|-.++|.+.|...+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3456677889999999999986544
No 41
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=37.77 E-value=1.6e+02 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=7.2
Q ss_pred HHHHHHHHhccc
Q 027912 120 FRSVALAIQRSG 131 (217)
Q Consensus 120 ~~~~~~~~~~~g 131 (217)
+++++..+++++
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 455666666654
No 42
>PLN02594 phosphatidate cytidylyltransferase
Probab=37.41 E-value=2.8e+02 Score=24.38 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHH
Q 027912 79 GLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 121 (217)
Q Consensus 79 g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~ 121 (217)
|..+-+ ....-..+.|+.+|..||.+||..+. +++-++.+|
T Consensus 123 G~~w~~-l~~~lV~~nDi~AY~~G~~fGk~kL~-~iSPkKTwE 163 (342)
T PLN02594 123 GIFWFL-LPASLIVINDIAAYLFGFFFGRTPLI-KLSPKKTWE 163 (342)
T ss_pred cHHHHH-HHHHHHHHHhHHHHHHHHHhcCCCCC-ccCCCCchh
Confidence 444433 33444788999999999999987554 444333443
No 43
>PLN02953 phosphatidate cytidylyltransferase
Probab=37.07 E-value=22 Score=31.65 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 027912 84 FVADSIGATIGAGAAFLLGRTIGKPFVI 111 (217)
Q Consensus 84 ~l~~~~g~~lG~~~~y~igr~~g~~~~~ 111 (217)
+++..+.....|+..|+.||.+|+..+.
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~ 298 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4456667888999999999999987554
No 44
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=35.45 E-value=2.6e+02 Score=23.27 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Q 027912 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFV 110 (217)
Q Consensus 78 ~g~~~~~l~~~~g~~lG~~~~y~igr~~g~~~~ 110 (217)
.|.|..++.+.+.+.++..+.+++.|....+..
T Consensus 144 gG~w~d~~iaf~~~~~~~~~~~~l~r~~~~~~~ 176 (250)
T COG2966 144 GGGWLDFLIAFFAGLLGFLLRQYLSRKGNPDFF 176 (250)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Confidence 479999999999999999999999965544433
No 45
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=35.22 E-value=3.6e+02 Score=24.74 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHhcCchHHHHHHHHHhcccHHHH-HHHhhcCCC
Q 027912 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIV-LLLRLVPLL 144 (217)
Q Consensus 67 ~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~-~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-~l~r~~P~~ 144 (217)
+..++-..|..|..-...+....|..+|.. ..+++++++.+-. +..+-..--|-++++++++....+ .+.-..-.+
T Consensus 56 ~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~--~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i 133 (493)
T COG0591 56 GWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA--KARGATTIPDFLEARFGSKILRILSALIIIVFFI 133 (493)
T ss_pred HHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCccHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 334444445555444455555555433333 5555555543211 111111233334444443222211 222222224
Q ss_pred ChhhHHHHhhc----CCCChhHHHHHHHHhhHHHHHHHHHHHh-hhcccccccc
Q 027912 145 PFNMLNYLLSV----TPVPLLEYMLASWIGMMPITLALVYVGT-TLKDLSDVTH 193 (217)
Q Consensus 145 p~~~~~~~aG~----~~i~~~~f~~~~~ig~~p~~~~~~~~G~-~~~~~~~~~~ 193 (217)
|+...-+.++- .-.. .++..+..++.. -..+|+..|- +.-.+.|..+
T Consensus 134 ~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~-~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 134 PYIALQLVAGGLLLSLLFG-ISYVTGILIGAL-IVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHH-HHHHHHHHcChhHHHHHHHHH
Confidence 44445444443 2233 566777766533 4455555554 3334444443
No 46
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=33.97 E-value=1.8e+02 Score=20.81 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027912 79 GLPVGFVADSIGATIGAGAAFLLGRTI 105 (217)
Q Consensus 79 g~~~~~l~~~~g~~lG~~~~y~igr~~ 105 (217)
++|+++++......+.+.+.+..+++-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777666666666666666543
No 47
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=30.93 E-value=2.7e+02 Score=22.13 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcccHHHH
Q 027912 118 PQFRSVALAIQRSGFKIV 135 (217)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i 135 (217)
+.++|+++|.++|+-...
T Consensus 180 ~~l~r~~~wl~~~~~~i~ 197 (214)
T PF11139_consen 180 PWLERLRSWLRRHSRQIL 197 (214)
T ss_pred HHHHHHHHHHHHccHHHH
Confidence 466778888888875544
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=30.54 E-value=1.2e+02 Score=22.62 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=24.4
Q ss_pred CccchHhHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 027912 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKILKDFLTWVD 42 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 42 (217)
|.++|...+.-.+-++++..++--+.|.|..+.+++=.+.++
T Consensus 3 i~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~ 44 (141)
T PRK08476 3 LDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIK 44 (141)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776544444455555555566677888777754444443
No 49
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.05 E-value=1.1e+02 Score=25.43 Aligned_cols=34 Identities=12% Similarity=0.355 Sum_probs=23.1
Q ss_pred CccchHhHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 027912 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 34 (217)
|.++|...+.-++-+++++.++--+.|.|..+.+
T Consensus 1 M~id~~t~~~qiInFlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 1 MLIDWFTVVAQIINFLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889887666555556666666666777876554
No 50
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=29.47 E-value=80 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 027912 67 ASVLTLGGGYLFGLPVGFVADSIGATIG 94 (217)
Q Consensus 67 ~~~~~~~~g~~~g~~~~~l~~~~g~~lG 94 (217)
+-+-..++|+.|||++|.+...+...+|
T Consensus 98 gfIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 98 ELILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3456778999999999999999888888
No 51
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=28.62 E-value=3.9e+02 Score=23.20 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 027912 87 DSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 87 ~~~g~~lG~~~~y~igr~~g~~ 108 (217)
+.+=+.+|-..+|+.+|.+|.+
T Consensus 229 v~~~n~lg~~~gy~~ar~~g~~ 250 (319)
T COG0385 229 VILHNLLGLLLGYFGARLLGFD 250 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3333555666667777766644
No 52
>PRK14400 membrane protein; Provisional
Probab=28.06 E-value=1.3e+02 Score=24.17 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHhc
Q 027912 82 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLK 115 (217)
Q Consensus 82 ~~~l~~~~g~~lG~~-~~y~igr~~g~~~~~~~~~ 115 (217)
.+.++..+|-.+|+. .+|+++|...+..+++.-+
T Consensus 6 ~~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GS 40 (201)
T PRK14400 6 LGAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGS 40 (201)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCC
Confidence 345566778888887 8999999875544554333
No 53
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.80 E-value=2.8e+02 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=12.6
Q ss_pred hhhc-cChHHHHHHHHhhhh
Q 027912 61 TILA-VPASVLTLGGGYLFG 79 (217)
Q Consensus 61 ~~~~-iP~~~~~~~~g~~~g 79 (217)
...| +|+..++..+-..++
T Consensus 20 lv~PaiPs~lli~~G~l~y~ 39 (160)
T COG2839 20 LVYPAIPSTLLIFAGFLAYG 39 (160)
T ss_pred hhhcccchHHHHHHHHHHHH
Confidence 3445 899988887654443
No 54
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=27.75 E-value=1.6e+02 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChH
Q 027912 82 VGFVADSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 82 ~~~l~~~~g~~lG~~~~y~igr~~g~~ 108 (217)
..++.+.=++.=+..++|++||+-||+
T Consensus 67 ESLLFaLQAAiGAgiIgY~lG~~~gr~ 93 (100)
T PRK02898 67 ESLLFALQAALGAGIIGYILGYYKGRS 93 (100)
T ss_pred HHHHHHHHHHHhhhhhheeeeehhhhh
Confidence 344444444444556889999877754
No 55
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=26.69 E-value=2e+02 Score=26.80 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhhc
Q 027912 11 ITLLILLVAAVVTACFTLPVEKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILA 64 (217)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 64 (217)
+..++.+++++++.+.|.+.+..++.+.+|+. +.|..+..+|.. .....+|
T Consensus 177 i~~~~~~~l~~~~~~iWP~i~~gi~~l~~~i~-~~g~~G~fiyG~--leRlLiP 227 (524)
T TIGR02005 177 IAFFVMLPCAAITCLVWPKVQMGIGSLQAFLI-SSGYIGVWLYTF--LERILIP 227 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHH--HHHHhhh
Confidence 33455567777788888888899999999999 568777766544 3444444
No 56
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=26.52 E-value=2.2e+02 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=18.4
Q ss_pred HhhcCCCChhhHHHHhhcCCCC
Q 027912 138 LRLVPLLPFNMLNYLLSVTPVP 159 (217)
Q Consensus 138 ~r~~P~~p~~~~~~~aG~~~i~ 159 (217)
.|++|..-+|+-|+.++.++.|
T Consensus 105 ~rlla~L~~Dvr~ISf~~s~lp 126 (546)
T COG4615 105 ARLLAGLTSDVRNISFAFSRLP 126 (546)
T ss_pred cchhhhhcccccceeehHhhhH
Confidence 6778888888888888888887
No 57
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=26.09 E-value=2.9e+02 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=17.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHc
Q 027912 3 FTWGSALRITLLILLVAAVVTACFTL 28 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 28 (217)
++|++..|....++++......++..
T Consensus 13 l~~r~~~K~~~~~l~l~sa~~~yf~~ 38 (156)
T PF08019_consen 13 LSWRRLFKPLLILLLLLSAIASYFMD 38 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877777666665555443
No 58
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=25.01 E-value=2.5e+02 Score=25.02 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhcccHHHHHHHhhcCCCChhhHHHHhhcC
Q 027912 85 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVT 156 (217)
Q Consensus 85 l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~r~~P~~p~~~~~~~aG~~ 156 (217)
....++..++..+.|..+|.+-+-...++.++++-.+-.++.+.|++-+.+-+..+.-..+ -...|.++.+
T Consensus 34 i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~-i~~aY~~~~~ 104 (397)
T TIGR00814 34 WVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYP-ILLIYSVAIT 104 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3334444555556677666554443333332334566677778887776666666655444 3344444433
No 59
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=24.71 E-value=4.9e+02 Score=22.95 Aligned_cols=61 Identities=11% Similarity=-0.105 Sum_probs=43.6
Q ss_pred ccCChHHHHHHHHHHHHhhhccChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 027912 44 DLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGA-AFLLGRT 104 (217)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~-~y~igr~ 104 (217)
++++..--=|.-........|=|........|+..+-+.|.+++.+|..+=+.+ .+.+.+.
T Consensus 235 ~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~ 296 (368)
T TIGR00937 235 RGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPY 296 (368)
T ss_pred ccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666556666777778888787777778888888888888888888776653 4444443
No 60
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=24.65 E-value=1.9e+02 Score=22.24 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=31.6
Q ss_pred HhcccHH-HHHHHhhcCCCChhh-HHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhccc
Q 027912 127 IQRSGFK-IVLLLRLVPLLPFNM-LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDL 188 (217)
Q Consensus 127 ~~~~g~~-~i~l~r~~P~~p~~~-~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~~ 188 (217)
+++..+. .+.++..+| .|... .....|...-.+.-=+.+..--..|..++....+....+.
T Consensus 38 lt~~~f~~~~al~q~~P-GP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~~ 100 (169)
T PF02417_consen 38 LTEEEFLEGLALAQALP-GPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSRF 100 (169)
T ss_pred CCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 568899999 57433 3333333322233333444444556666666666655553
No 61
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=24.57 E-value=2.3e+02 Score=27.24 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhccCChHHHHHHHHHHHHhhhc
Q 027912 12 TLLILLVAAVVTACFTLPVEKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILA 64 (217)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 64 (217)
..++.+++++++.+.|.+.+..++.+-+|+. ..|..+.++|.++ ....+|
T Consensus 137 ~~~~~~~~g~i~~~iWP~v~~gi~~lg~~i~-~~g~~G~fiyG~l--eRlLiP 186 (648)
T PRK10255 137 TGFFCLVLAAIFGYVWPPVQHAIHAGGEWIV-SAGALGSGIFGFI--NRLLIP 186 (648)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCchHHHHHHHH--HHHhhh
Confidence 4455567777778888888899999999999 5788887765543 444444
No 62
>PRK14407 membrane protein; Provisional
Probab=24.38 E-value=1.2e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHH
Q 027912 82 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISK 113 (217)
Q Consensus 82 ~~~l~~~~g~~lG~~-~~y~igr~~g~~~~~~~ 113 (217)
.+.+...+|-.+|+. .+|.++|...+..+++.
T Consensus 6 ~~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~ 38 (219)
T PRK14407 6 AGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREH 38 (219)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhCCCCCCcC
Confidence 345555677888886 88999998644334433
No 63
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=23.82 E-value=1.4e+02 Score=20.47 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=11.4
Q ss_pred CccchHhHHHHHHHHHHH
Q 027912 1 MAFTWGSALRITLLILLV 18 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l 18 (217)
|..+|++.++...+.+++
T Consensus 1 m~~~w~~~l~~l~~~~l~ 18 (90)
T PF11808_consen 1 MRNSWRRELWRLLLLLLA 18 (90)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 777888877655544433
No 64
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=23.58 E-value=3.9e+02 Score=21.40 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=26.2
Q ss_pred HHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhhHHHHHHHHHHHhhhcc
Q 027912 135 VLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 187 (217)
Q Consensus 135 i~l~r~~P~~p~~~~~~~aG~~~i~~~~f~~~~~ig~~p~~~~~~~~G~~~~~ 187 (217)
+.++-.+- +-.-.+...+|..+++.........+ .+++.++.|..+++
T Consensus 132 l~L~iAlS-iDalavG~s~~~~g~~~~~~~~~igi----vs~i~~~~G~~lG~ 179 (206)
T TIGR02840 132 LLLGIALS-LDAFGAGIGASLLGLNPLATSILVAV----MSFIFVSLGLFLGK 179 (206)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhCccHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34443433 34445667778888875554444444 45555555555544
No 65
>PF14163 SieB: Superinfection exclusion protein B
Probab=23.25 E-value=3.3e+02 Score=20.43 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=14.1
Q ss_pred ccChHHHHHHHH----hhhhhHHHHHHHHHHHHH
Q 027912 64 AVPASVLTLGGG----YLFGLPVGFVADSIGATI 93 (217)
Q Consensus 64 ~iP~~~~~~~~g----~~~g~~~~~l~~~~g~~l 93 (217)
..|.+....+.- ..++++.+.......+.+
T Consensus 14 f~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~l 47 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYL 47 (151)
T ss_pred HCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHH
Confidence 356555544422 235555555554433333
No 66
>COG4720 Predicted membrane protein [Function unknown]
Probab=23.21 E-value=1e+02 Score=24.34 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 027912 68 SVLTLGGGYLFGLPVGFVADSIGATIGAGAAFL 100 (217)
Q Consensus 68 ~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~ 100 (217)
+....++...||+..|.++..+|..+=|.++++
T Consensus 41 da~i~las~lfGs~~G~lvg~iG~al~Dll~gy 73 (177)
T COG4720 41 DAGIALASFLFGSRAGALVGGLGHALKDLLSGY 73 (177)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCC
Confidence 556777788899999999999999998888743
No 67
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=23.19 E-value=2.9e+02 Score=19.85 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhcccHHHHH
Q 027912 88 SIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVL 136 (217)
Q Consensus 88 ~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 136 (217)
.....+|..+.|+.-|+..+ .. ++|+..|+++.-.++......
T Consensus 31 ~i~~~~g~~~~~~~~~~v~~-----v~-eDER~~~I~ekAs~~Tl~V~~ 73 (111)
T PF09946_consen 31 VIVFLAGILLVYLYRRRVED-----VV-EDERTERISEKASRRTLQVFI 73 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCc-----ch-hhHHHHHHHHHHHHHHHHHHH
Confidence 33344566666666544432 23 467888887777666655443
No 68
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.13 E-value=2.5e+02 Score=18.95 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=6.7
Q ss_pred HHHHHHHHHhccCC
Q 027912 34 LKDFLTWVDQDLGP 47 (217)
Q Consensus 34 l~~l~~~~~~~~g~ 47 (217)
...+.++++ +.|.
T Consensus 37 ~k~i~~yL~-e~gy 49 (85)
T PF11337_consen 37 EKAIDWYLQ-EQGY 49 (85)
T ss_pred HHHHHHHHH-HcCC
Confidence 455556665 3443
No 69
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=23.08 E-value=3.5e+02 Score=20.71 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=42.4
Q ss_pred ccCChHHHHHHHHHHHHhhhccChHH-HHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 027912 44 DLGPWGPLVLAVAYIPLTILAVPASV-LTLGGGYLFGLPVGFVADSIGATIGAG-AAFLLGRTI 105 (217)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP~~~-~~~~~g~~~g~~~~~l~~~~g~~lG~~-~~y~igr~~ 105 (217)
++++...-=|.=........|=|... +....|+..+-+.|.+++.+|..+=+. +...+++.+
T Consensus 34 ~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~ 97 (169)
T PF02417_consen 34 RRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLY 97 (169)
T ss_pred ccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666777888878777 888888887777788888887655444 455555443
No 70
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.98 E-value=1.9e+02 Score=17.73 Aligned_cols=24 Identities=17% Similarity=0.240 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027912 77 LFGLPVGFVADSIGATIGAGAAFLLGRTI 105 (217)
Q Consensus 77 ~~g~~~~~l~~~~g~~lG~~~~y~igr~~ 105 (217)
.+|+|...++.. -..++|.+|++.
T Consensus 26 ~~GF~~tl~i~~-----~~~iG~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWKTLFILL-----FAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 356665554332 234556666654
No 71
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.84 E-value=2e+02 Score=21.96 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=20.7
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Q 027912 2 AFTWGSALRITLLILLVAAVVTACFTLPVEKILKD 36 (217)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 36 (217)
+++|.-.+.-++-+++++.++--+.|.|..+.++.
T Consensus 5 ~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~ 39 (164)
T PRK14473 5 GINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNE 39 (164)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776555444445555555566667787766643
No 72
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=2.8e+02 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=17.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHh
Q 027912 160 LLEYMLASWIGMMPITLALVYVGT 183 (217)
Q Consensus 160 ~~~f~~~~~ig~~p~~~~~~~~G~ 183 (217)
.++++++...+.+.|..++..-+.
T Consensus 161 ~~K~~lv~~~sm~lWi~v~i~t~~ 184 (226)
T COG4858 161 TWKYLLVAVLSMLLWIAVMIATVF 184 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888899988855544
No 73
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=21.94 E-value=2.3e+02 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHHHhcCc
Q 027912 85 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDY 117 (217)
Q Consensus 85 l~~~~g~~lG~~-~~y~igr~~g~~~~~~~~~~~ 117 (217)
+...+|-.+|+. .+|+++|..++..+++.-+++
T Consensus 7 l~~i~~YLlGsip~~~ii~k~~~~~DiR~~GSgN 40 (198)
T PRK00220 7 LLILLAYLLGSIPFALLVGKLFGLPDPREHGSGN 40 (198)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCC
Confidence 345667888887 899999987654455443333
No 74
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.33 E-value=2e+02 Score=21.96 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhChH
Q 027912 86 ADSIGATIGAGAAFLLGRTIGKP 108 (217)
Q Consensus 86 ~~~~g~~lG~~~~y~igr~~g~~ 108 (217)
...++..+|-.++|.+.|++.++
T Consensus 105 ~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 105 AALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888888877543
No 75
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.82 E-value=2.6e+02 Score=21.83 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-hHHHHHH-----hcC-----chHHHHHHHHHhcccHHHHHHHhhc
Q 027912 84 FVADSIGATIGAGAAFLLGRTIG-KPFVISK-----LKD-----YPQFRSVALAIQRSGFKIVLLLRLV 141 (217)
Q Consensus 84 ~l~~~~g~~lG~~~~y~igr~~g-~~~~~~~-----~~~-----~~~~~~~~~~~~~~g~~~i~l~r~~ 141 (217)
+-++.+|.++|..++-.+-+++. +|+..+- +++ .+|.+++++..+++..-+..+.+|-
T Consensus 49 f~~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~FY 117 (165)
T PF11286_consen 49 FHWNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRFY 117 (165)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566777778777777776664 3444321 111 3577788887777777666666653
No 76
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=20.54 E-value=1.2e+02 Score=23.96 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 027912 81 PVGFVADSIGATIGAGAAFLLGRTIGKPF 109 (217)
Q Consensus 81 ~~~~l~~~~g~~lG~~~~y~igr~~g~~~ 109 (217)
.+..+...+.+.+++.++-++||+.-+++
T Consensus 155 ~~~~~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 155 PWMLIIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667777788999999988888775543
No 77
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=20.32 E-value=1.3e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHH
Q 027912 82 VGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQF 120 (217)
Q Consensus 82 ~~~l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~ 120 (217)
....+++.....||.++=.+||++|+. .++.++++..
T Consensus 114 ~~~~~~I~~l~~GD~lAsiiG~~~G~~--~~~~~~~KSl 150 (216)
T COG0170 114 EVAIAGILVLALGDGLASIIGKRYGRH--KRILGNGKSL 150 (216)
T ss_pred HHHHHHHHHHHHhhHHHHHhCcccCcc--ccccCCCCch
Confidence 556677777889999999999999986 3344443333
No 78
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.03 E-value=1.8e+02 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 027912 84 FVADSIGATIGAGAAFLLGRTIGKPFV 110 (217)
Q Consensus 84 ~l~~~~g~~lG~~~~y~igr~~g~~~~ 110 (217)
+++++++.++|..++|++.+...+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887765444
Done!