Query 027912
Match_columns 217
No_of_seqs 110 out of 1214
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 41.2 63 0.0022 24.3 6.0 31 67-97 47-77 (189)
2 4ezc_A UREA transporter 1; mem 26.7 1.7E+02 0.0058 24.9 6.8 68 34-102 37-106 (384)
3 1p58_D Envelope protein M; fla 17.6 82 0.0028 20.2 2.3 21 118-138 27-47 (75)
4 3j27_B Matrix protein, small e 17.0 79 0.0027 20.3 2.1 21 118-138 27-47 (75)
5 2hfr_A Fowlicidin-3, cathelici 14.6 84 0.0029 15.5 1.4 17 139-155 2-18 (27)
6 2wsw_A BCCT family betaine/car 12.1 3.3E+02 0.011 24.0 5.5 24 29-52 40-63 (509)
7 2lbg_A Major prion protein; co 11.0 2E+02 0.0067 14.5 3.1 18 87-104 7-24 (27)
8 2w3l_A BCL2-XL, apoptosis regu 10.2 4.3E+02 0.015 18.5 4.8 17 3-19 80-96 (144)
9 4ain_A Glycine betaine transpo 9.8 3.7E+02 0.013 23.9 5.0 23 29-51 43-65 (539)
10 4ev6_A Magnesium transport pro 9.7 3.3E+02 0.011 22.1 4.5 47 58-104 283-335 (339)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=41.22 E-value=63 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 027912 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (217)
Q Consensus 67 ~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~ 97 (217)
+++...++++.+||..|.+...++..+++..
T Consensus 47 ~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 47 SDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4467788899999999999998888888776
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=26.68 E-value=1.7e+02 Score=24.89 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhhhcc--ChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027912 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAV--PASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLG 102 (217)
Q Consensus 34 l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~i--P~~~~~~~~g~~~g~~~~~l~~~~g~~lG~~~~y~ig 102 (217)
.++..+|.+|+ +..--++-.++--....... |-+=+.++.|..++-++..+.+.+|+.+|....+.++
T Consensus 37 ~~~~~~~~~~~-~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 37 MKEFANWLKDK-PQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp CHHHHHHHHTS-CHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcC-CcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 46777888853 32111222233333334333 4444666777777655555666666666666555544
No 3
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=17.63 E-value=82 Score=20.21 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcccHHHHHHH
Q 027912 118 PQFRSVALAIQRSGFKIVLLL 138 (217)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i~l~ 138 (217)
+.+.|.|+|.-||+.+.++..
T Consensus 27 ~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH
Confidence 578899999999998776554
No 4
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=16.95 E-value=79 Score=20.29 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcccHHHHHHH
Q 027912 118 PQFRSVALAIQRSGFKIVLLL 138 (217)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i~l~ 138 (217)
+.+.|.|+|.-||+.+.++..
T Consensus 27 ~~l~rvE~WilrNp~~al~~~ 47 (75)
T 3j27_B 27 KHAQRIETWILRHPGFTIMAA 47 (75)
T ss_dssp HHHHHHHHHHHHCCTHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHH
Confidence 578899999999987666443
No 5
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=14.60 E-value=84 Score=15.52 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.7
Q ss_pred hhcCCCChhhHHHHhhc
Q 027912 139 RLVPLLPFNMLNYLLSV 155 (217)
Q Consensus 139 r~~P~~p~~~~~~~aG~ 155 (217)
||.|.+|-.+....+|.
T Consensus 2 RF~P~vpvaintvaagi 18 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGI 18 (27)
T ss_dssp CSCSSSSSHHHHHHHHH
T ss_pred CccccCcceEEEeehhh
Confidence 67888885544444553
No 6
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=12.08 E-value=3.3e+02 Score=24.03 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHhccCChHHHH
Q 027912 29 PVEKILKDFLTWVDQDLGPWGPLV 52 (217)
Q Consensus 29 ~~~~~l~~l~~~~~~~~g~~~~~~ 52 (217)
..++..+...+|+.+++|++-.+.
T Consensus 40 ~~~~~~~~~~~~i~~~fgW~y~l~ 63 (509)
T 2wsw_A 40 ASNEVINAVFSYVTNVWGWAFEWY 63 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345678899999998777655433
No 7
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=10.95 E-value=2e+02 Score=14.50 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027912 87 DSIGATIGAGAAFLLGRT 104 (217)
Q Consensus 87 ~~~g~~lG~~~~y~igr~ 104 (217)
...|.++|+.-.|++|+-
T Consensus 7 ~AAGaVvGglGgy~lg~~ 24 (27)
T 2lbg_A 7 AAAGAVVGGLGGYMLGSA 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHH
Confidence 456778888888888764
No 8
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=10.20 E-value=4.3e+02 Score=18.53 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=11.0
Q ss_pred cchHhHHHHHHHHHHHH
Q 027912 3 FTWGSALRITLLILLVA 19 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~l~ 19 (217)
+||+|..-+..+...++
T Consensus 80 inWGRIValf~F~g~la 96 (144)
T 2w3l_A 80 VNWGRIVAFFEFGGVMC 96 (144)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 58888777665555443
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=9.78 E-value=3.7e+02 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHhccCChHHH
Q 027912 29 PVEKILKDFLTWVDQDLGPWGPL 51 (217)
Q Consensus 29 ~~~~~l~~l~~~~~~~~g~~~~~ 51 (217)
...+..+...+|+.+++|++-.+
T Consensus 43 ~~~~~~~~~~~~i~~~fgW~y~l 65 (539)
T 4ain_A 43 SFTNFASSALSAVVDNLGWAFIL 65 (539)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 45677899999999877765433
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=9.72 E-value=3.3e+02 Score=22.15 Aligned_cols=47 Identities=17% Similarity=-0.032 Sum_probs=27.9
Q ss_pred HHHhhhccChHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 027912 58 IPLTILAVPASVLTLGGGYLFG------LPVGFVADSIGATIGAGAAFLLGRT 104 (217)
Q Consensus 58 ~~~~~~~iP~~~~~~~~g~~~g------~~~~~l~~~~g~~lG~~~~y~igr~ 104 (217)
.+.+.+.+|.+.+.-+-|+=++ ...|+.+.+...++.+.+.|+..|+
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777776666666542 3456665555556666666666664
Done!