Query 027912
Match_columns 217
No_of_seqs 110 out of 1214
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 04:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 24.8 66 0.0048 19.0 6.6 21 118-138 37-57 (86)
2 d2jm6b1 f.1.4.1 (B:147-308) EA 9.8 2E+02 0.015 19.0 4.7 17 3-19 94-110 (162)
3 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 9.5 2.2E+02 0.016 19.0 4.8 17 3-19 99-115 (164)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 8.3 2.8E+02 0.02 18.2 6.3 14 3-16 82-95 (146)
5 d2ckca1 d.76.2.1 (A:2563-2622) 5.7 36 0.0026 19.4 -1.0 26 117-142 23-48 (60)
6 d2ve8a1 a.4.5.67 (A:745-811) D 5.1 2.1E+02 0.015 16.3 2.3 26 107-132 21-47 (67)
7 d2j5pa1 a.4.5.67 (A:1261-1329) 4.8 2E+02 0.015 16.5 2.1 26 107-132 24-50 (69)
8 d2osoa1 d.278.1.3 (A:5-156) Hy 4.5 1.6E+02 0.012 19.4 1.7 43 85-133 35-77 (152)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 4.1 2.5E+02 0.018 14.3 2.0 28 119-147 8-35 (47)
10 d1t33a2 a.121.1.1 (A:89-220) P 3.8 3E+02 0.022 17.6 2.6 36 91-130 83-122 (132)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=24.77 E-value=66 Score=19.00 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=9.6
Q ss_pred hHHHHHHHHHhcccHHHHHHH
Q 027912 118 PQFRSVALAIQRSGFKIVLLL 138 (217)
Q Consensus 118 ~~~~~~~~~~~~~g~~~i~l~ 138 (217)
+..++.-+..-|+..+.+.+.
T Consensus 37 ~~~~~~i~~~~~~~i~~i~~~ 57 (86)
T d2vv5a3 37 ATVADFLSALVRYGIIAFTLI 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555444333
No 2
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.82 E-value=2e+02 Score=19.02 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=10.4
Q ss_pred cchHhHHHHHHHHHHHH
Q 027912 3 FTWGSALRITLLILLVA 19 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~l~ 19 (217)
.||+|+.-+..+...++
T Consensus 94 ~NWGRIval~~F~~~la 110 (162)
T d2jm6b1 94 TNWGRIVTLISFGAFVA 110 (162)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 47888777665554443
No 3
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.46 E-value=2.2e+02 Score=19.03 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=10.4
Q ss_pred cchHhHHHHHHHHHHHH
Q 027912 3 FTWGSALRITLLILLVA 19 (217)
Q Consensus 3 ~~~~~~~~~~~~~~~l~ 19 (217)
+||+|+.-+..+...++
T Consensus 99 inWGRIVal~~F~~~la 115 (164)
T d1g5ma_ 99 VNWGRIVAFFEFGGVMC 115 (164)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 58888766555554443
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=8.30 E-value=2.8e+02 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=9.4
Q ss_pred cchHhHHHHHHHHH
Q 027912 3 FTWGSALRITLLIL 16 (217)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (217)
.||+|+.-+..+..
T Consensus 82 ~NWGRIVaLfaFg~ 95 (146)
T d1k3ka_ 82 MNWGRALAILTFGS 95 (146)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 48888877665543
No 5
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.69 E-value=36 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.8
Q ss_pred chHHHHHHHHHhcccHHHHHHHhhcC
Q 027912 117 YPQFRSVALAIQRSGFKIVLLLRLVP 142 (217)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~i~l~r~~P 142 (217)
-|+.+.+.+|+++|+-+.+-.-+++|
T Consensus 23 AP~~~~L~~WL~~hP~y~Vd~p~~~p 48 (60)
T d2ckca1 23 APKNKDLVEWLKLHPTYTVDMPSYVP 48 (60)
T ss_dssp SCBHHHHHHHHHHCTTEEESCCCCCC
T ss_pred CcCHHHHHHHHHHCCCcEeecCccCc
Confidence 37889999999999988776666666
No 6
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.10 E-value=2.1e+02 Score=16.28 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=17.8
Q ss_pred hHHHHHHhc-CchHHHHHHHHHhcccH
Q 027912 107 KPFVISKLK-DYPQFRSVALAIQRSGF 132 (217)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~~~~~~~g~ 132 (217)
-+.++|+++ .+++-.++...+++.|.
T Consensus 21 ~S~lQR~l~IGYnRAariid~LE~~Gi 47 (67)
T d2ve8a1 21 ISAVQRKLKIGYNRAARMIEAMEMAGV 47 (67)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHCcC
Confidence 456667664 35677788777887775
No 7
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=4.79 E-value=2e+02 Score=16.48 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.5
Q ss_pred hHHHHHHhc-CchHHHHHHHHHhcccH
Q 027912 107 KPFVISKLK-DYPQFRSVALAIQRSGF 132 (217)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~~~~~~~g~ 132 (217)
-+.++|+++ .+++-.|+...++++|.
T Consensus 24 ~S~lQR~l~IGYnRAariid~LE~~Gi 50 (69)
T d2j5pa1 24 ISGVQRQFRIGYNRAARIIEQMEAQGI 50 (69)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccchHHHHHHHHHHHCCc
Confidence 356666664 35677777777777765
No 8
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=4.55 E-value=1.6e+02 Score=19.42 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCchHHHHHHHHHhcccHH
Q 027912 85 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFK 133 (217)
Q Consensus 85 l~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 133 (217)
+.--++..-.+.+.|+.|+..|+..-. +..+.+.+.++++|+-
T Consensus 35 l~d~l~~~~~~~iLY~aGk~lGr~~~~------k~~eel~~ff~~~g~G 77 (152)
T d2osoa1 35 IFDKVKELGSETSLYEIGEEFGKMLSP------KNIEELKKIFKLMNFG 77 (152)
T ss_dssp HHHHHC--CCCCCHHHHHHHHHHHHCC------SSHHHHHHHHHHHTCC
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCc
Confidence 333344444556889999998865321 2456666777776654
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.10 E-value=2.5e+02 Score=14.35 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcccHHHHHHHhhcCCCChh
Q 027912 119 QFRSVALAIQRSGFKIVLLLRLVPLLPFN 147 (217)
Q Consensus 119 ~~~~~~~~~~~~g~~~i~l~r~~P~~p~~ 147 (217)
..+.+.+..+++|-..-.++..+| -+++
T Consensus 8 ED~~L~~~v~~~G~~W~~Ia~~~~-gRt~ 35 (47)
T d1gv2a2 8 EDRIIYQAHKRLGNRWAEIAKLLP-GRTD 35 (47)
T ss_dssp HHHHHHHHHHHHSSCHHHHHTTCT-TCCH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHcC-CCCH
Confidence 445666777788877788888888 4533
No 10
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=3.77 E-value=3e+02 Score=17.55 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHhc----CchHHHHHHHHHhcc
Q 027912 91 ATIGAGAAFLLGRTIGKPFVISKLK----DYPQFRSVALAIQRS 130 (217)
Q Consensus 91 ~~lG~~~~y~igr~~g~~~~~~~~~----~~~~~~~~~~~~~~~ 130 (217)
+.+|-++.|.++|.. +.+++. +.++.+++.+.+.++
T Consensus 83 sivGq~l~f~var~~----~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 83 ALLGEVLAFRLGKET----ILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHTHHH----HHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 578888888888754 333332 235667776666654
Done!