BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027913
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
+QL + L KA VL+IG G G +A A ++ G+D ++ A AA
Sbjct: 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD-------VSKVAIKAAAKR 128
Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV 210
F A +P SD S DA++ C +++
Sbjct: 129 YPQVTFCVASSHRLPFSDTSXDAIIRIYAPCKAEEL 164
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
+VL++G G G A DV+V G+ +R A A AAGL F A
Sbjct: 64 RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAXD 122
Query: 188 IPVSDASVDAV 198
+P DAS DAV
Sbjct: 123 LPFEDASFDAV 133
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 94 EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTG-PNLKYYAADTDVQVL 152
E+Y ++ ++ +AE+ + ++ + + ++VL++ GTG P L+ A+ +V+
Sbjct: 10 EYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLE--LAERGYEVV 67
Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
G+D + +M + A+ A L + +FLQ
Sbjct: 68 GLDLHEEMLRVARRKAKERNLKI---EFLQG 95
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 92 YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
YE +Y + + + + + E + L + +LE+G GTG L+ Q
Sbjct: 10 YEAWYGTPLGAYVIAEE-------ERALKGLLPPGESLLEVGAGTGYWLRRLPYP---QK 59
Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
+GV+P+ + A A +++A GEA+P S D V+ L V+DV+
Sbjct: 60 VGVEPSEAXLAVGRRRAPEA-------TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVE 112
Query: 212 MTL 214
L
Sbjct: 113 RVL 115
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 128 KVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186
KVLE G G G A + D ++ +D + + + A+ G+ N KFLQA
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--KNVKFLQANIF 97
Query: 187 AIPVSDASVDAVVGTLVLCSVKDVDMTLQA 216
++P D+S D + VL ++ + L++
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKS 127
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 96 YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVD 155
Y S + Y+ A Y+ L D + VLE G+GTG NL V G++
Sbjct: 16 YDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTG-NLTNKLLLAGRTVYGIE 74
Query: 156 PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
P+R+M A+ + +T FL +P S+D +V T + D
Sbjct: 75 PSREMRMIAK-EKLPKEFSITEGDFLSF---EVP---TSIDTIVSTYAFHHLTD 121
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-----PLTNFKFLQ 182
++L+IG G+G + A V G+D N + + A+TAA + GL FK
Sbjct: 33 EILDIGCGSG-KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN 91
Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKD 209
A ++ D+S D V L SV D
Sbjct: 92 A--SSLSFHDSSFDFAVMQAFLTSVPD 116
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
++ D G LE GP YA D D + LG+ A+ AA+A+G L+
Sbjct: 206 RVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGL---------AREAALASG--LS 254
Query: 177 NFKFLQAVGEAIPVSDASVDAVV 199
+FL+A +P VD ++
Sbjct: 255 WIRFLRADARHLPRFFPEVDRIL 277
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ M E Y++ +F N K K VL++G GTG + A
Sbjct: 33 DYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 92
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 93 ARKVIGIE 100
>pdb|1NF4|A Chain A, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|B Chain B, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|C Chain C, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|D Chain D, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|E Chain E, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|F Chain F, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|G Chain G, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|H Chain H, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|I Chain I, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|J Chain J, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|K Chain K, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|L Chain L, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|M Chain M, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|N Chain N, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|O Chain O, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|P Chain P, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF6|A Chain A, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|B Chain B, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|C Chain C, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|D Chain D, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|E Chain E, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|F Chain F, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|G Chain G, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|H Chain H, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|I Chain I, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|J Chain J, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|K Chain K, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|L Chain L, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|M Chain M, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|N Chain N, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|O Chain O, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|P Chain P, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NFV|A Chain A, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|B Chain B, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|C Chain C, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|D Chain D, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|E Chain E, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|F Chain F, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|G Chain G, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|H Chain H, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|I Chain I, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|J Chain J, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|K Chain K, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|L Chain L, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|M Chain M, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|N Chain N, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|O Chain O, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|P Chain P, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
Length = 179
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 139 NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-------- 190
++ Y +++++ +D R E +A+ G P T + G+A+PV
Sbjct: 39 DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQ 98
Query: 191 SDASVDAVVGTLVLC 205
DA+++A L +C
Sbjct: 99 EDATIEAYSQFLKVC 113
>pdb|4ANN|A Chain A, Crystal Structure Staphylococcus Aureus Essb Cytoplasmic
Fragment
Length = 215
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
GLP+ + LQ V + +PVS+A LV+C+ +
Sbjct: 116 GLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICAFNE 153
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ M E Y++ +F N K K VL++G GTG + A
Sbjct: 23 DYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 82
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 83 ARKVIGIE 90
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ M E Y++ +F N K K VL++G GTG + A
Sbjct: 20 DYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 79
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 80 ARKVIGIE 87
>pdb|1XOV|A Chain A, The Crystal Structure Of The Listeria Monocytogenes
Bacteriophage Psa Endolysin Plypsa
Length = 326
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
L G GTG + YYA D + L V+ + KM K A GLP
Sbjct: 92 LNAGKGTGVEVWYYAGDEKGRKLAVEISAKMAK-------ALGLP 129
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPN 139
AGY +FD +K L IG GTGP+
Sbjct: 104 AGYPMAMFDENIIAPRKTLPIGPGTGPD 131
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 90 DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT 147
D+Y + YA ++ + E Y++ +F N K K VL++G GTG + A
Sbjct: 29 DYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG 88
Query: 148 DVQVLGVD 155
+V+G++
Sbjct: 89 ARKVIGIE 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,936,723
Number of Sequences: 62578
Number of extensions: 167276
Number of successful extensions: 415
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 18
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)