Query 027913
Match_columns 217
No_of_seqs 221 out of 2345
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 5.2E-21 1.1E-25 149.9 11.9 104 112-217 37-142 (238)
2 PF01209 Ubie_methyltran: ubiE 99.8 3.5E-20 7.7E-25 146.3 8.9 102 114-217 35-139 (233)
3 PRK11088 rrmA 23S rRNA methylt 99.8 3.2E-19 6.9E-24 144.5 12.0 150 41-215 17-172 (272)
4 KOG4300 Predicted methyltransf 99.8 3.7E-19 8E-24 133.7 9.9 134 80-217 33-168 (252)
5 PLN02244 tocopherol O-methyltr 99.8 4.5E-18 9.9E-23 141.7 14.9 105 111-216 98-208 (340)
6 COG2230 Cfa Cyclopropane fatty 99.8 3.3E-19 7.1E-24 142.2 5.7 135 76-214 19-159 (283)
7 PLN02396 hexaprenyldihydroxybe 99.8 3.1E-18 6.6E-23 140.9 9.6 90 125-216 131-220 (322)
8 PRK05785 hypothetical protein; 99.8 1E-17 2.3E-22 132.0 11.6 83 125-217 51-133 (226)
9 PLN02233 ubiquinone biosynthes 99.8 2.5E-17 5.4E-22 132.6 13.6 93 124-217 72-168 (261)
10 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.1E-18 2.4E-23 134.9 5.5 88 125-216 59-146 (243)
11 PF02353 CMAS: Mycolic acid cy 99.7 1.9E-18 4E-23 139.4 3.6 117 95-215 31-150 (273)
12 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-16 2.4E-21 126.6 12.5 102 113-216 32-136 (231)
13 PRK11036 putative S-adenosyl-L 99.7 5.9E-17 1.3E-21 130.1 10.6 99 116-216 35-134 (255)
14 PF13847 Methyltransf_31: Meth 99.7 5.9E-17 1.3E-21 120.2 9.2 89 125-216 3-95 (152)
15 PF08241 Methyltransf_11: Meth 99.7 3.1E-17 6.7E-22 111.4 6.2 83 130-217 1-83 (95)
16 KOG1540 Ubiquinone biosynthesi 99.7 2.4E-16 5.3E-21 122.3 10.6 104 114-217 88-200 (296)
17 PRK10258 biotin biosynthesis p 99.7 4.7E-16 1E-20 124.6 11.1 95 114-216 30-125 (251)
18 TIGR03587 Pse_Me-ase pseudamin 99.7 4.6E-16 1E-20 120.7 8.6 76 125-208 43-119 (204)
19 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.1E-15 2.4E-20 122.2 11.0 117 95-215 27-148 (247)
20 PRK14103 trans-aconitate 2-met 99.6 8.7E-16 1.9E-20 123.4 9.3 92 115-216 18-111 (255)
21 PF12847 Methyltransf_18: Meth 99.6 9.2E-16 2E-20 107.7 7.7 81 125-207 1-84 (112)
22 PRK01683 trans-aconitate 2-met 99.6 3.1E-15 6.8E-20 120.3 10.4 96 113-216 18-115 (258)
23 PRK11207 tellurite resistance 99.6 3E-15 6.6E-20 115.7 8.8 87 125-215 30-118 (197)
24 TIGR00740 methyltransferase, p 99.6 6.9E-15 1.5E-19 117.0 10.3 98 116-216 44-146 (239)
25 PTZ00098 phosphoethanolamine N 99.6 4E-15 8.6E-20 119.9 8.9 98 115-216 41-141 (263)
26 PRK15068 tRNA mo(5)U34 methylt 99.6 6.6E-15 1.4E-19 121.8 10.1 91 124-216 121-211 (322)
27 PLN02336 phosphoethanolamine N 99.6 6E-15 1.3E-19 128.4 10.0 98 117-217 257-355 (475)
28 PF13649 Methyltransf_25: Meth 99.6 2.8E-15 6.1E-20 103.5 5.9 79 129-210 1-84 (101)
29 PRK06202 hypothetical protein; 99.6 8E-15 1.7E-19 116.1 8.5 88 124-216 59-153 (232)
30 KOG1270 Methyltransferases [Co 99.6 3.4E-15 7.3E-20 116.5 5.1 86 126-215 90-179 (282)
31 PRK11873 arsM arsenite S-adeno 99.6 2.2E-14 4.7E-19 116.3 9.9 91 124-216 76-168 (272)
32 PF07021 MetW: Methionine bios 99.5 6.8E-15 1.5E-19 110.8 5.6 85 124-217 12-98 (193)
33 TIGR02081 metW methionine bios 99.5 1.6E-14 3.4E-19 111.4 7.6 83 125-216 13-97 (194)
34 TIGR00452 methyltransferase, p 99.5 3.3E-14 7.2E-19 116.7 9.8 97 118-216 113-210 (314)
35 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.6E-14 5.7E-19 118.2 9.2 89 124-217 112-201 (340)
36 TIGR02021 BchM-ChlM magnesium 99.5 8.4E-14 1.8E-18 109.4 11.7 80 125-209 55-134 (219)
37 PRK08317 hypothetical protein; 99.5 7.5E-14 1.6E-18 110.5 10.2 100 114-216 7-109 (241)
38 TIGR00477 tehB tellurite resis 99.5 4.5E-14 9.7E-19 109.0 8.3 80 125-209 30-109 (195)
39 TIGR02072 BioC biotin biosynth 99.5 8.2E-14 1.8E-18 110.3 9.8 86 125-216 34-120 (240)
40 smart00828 PKS_MT Methyltransf 99.5 3.8E-14 8.2E-19 111.6 7.8 88 127-216 1-89 (224)
41 PF08242 Methyltransf_12: Meth 99.5 1.4E-15 3.1E-20 104.5 -0.3 85 130-216 1-88 (99)
42 PRK00216 ubiE ubiquinone/menaq 99.5 2.8E-13 6E-18 107.4 11.7 101 115-216 40-143 (239)
43 PRK07580 Mg-protoporphyrin IX 99.5 1.7E-13 3.7E-18 108.2 10.2 81 125-210 63-143 (230)
44 PF03848 TehB: Tellurite resis 99.5 1.9E-13 4.2E-18 104.1 10.0 81 125-210 30-110 (192)
45 PRK00107 gidB 16S rRNA methylt 99.5 2.2E-13 4.7E-18 104.1 10.3 75 125-202 45-120 (187)
46 PRK11705 cyclopropane fatty ac 99.5 2.2E-14 4.7E-19 121.2 5.1 102 106-215 147-251 (383)
47 PF13489 Methyltransf_23: Meth 99.5 2.9E-14 6.2E-19 106.2 4.9 80 124-216 21-100 (161)
48 PRK12335 tellurite resistance 99.5 1.4E-13 3.1E-18 112.3 8.8 79 125-208 120-198 (287)
49 COG4106 Tam Trans-aconitate me 99.5 1.3E-13 2.8E-18 104.8 6.8 95 112-214 16-112 (257)
50 TIGR00138 gidB 16S rRNA methyl 99.5 6.1E-13 1.3E-17 101.3 10.5 82 125-210 42-124 (181)
51 PLN02585 magnesium protoporphy 99.5 5.5E-13 1.2E-17 109.6 10.3 82 125-210 144-228 (315)
52 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.2E-12 2.5E-17 102.7 11.7 99 114-216 27-128 (223)
53 PRK13944 protein-L-isoaspartat 99.4 1.1E-12 2.5E-17 101.9 11.3 91 118-209 64-157 (205)
54 PF05401 NodS: Nodulation prot 99.4 5.9E-13 1.3E-17 100.6 8.8 81 124-210 42-122 (201)
55 PRK00121 trmB tRNA (guanine-N( 99.4 5.4E-13 1.2E-17 103.5 8.3 83 122-206 37-123 (202)
56 PRK13942 protein-L-isoaspartat 99.4 2.1E-12 4.6E-17 100.9 11.3 89 118-208 68-159 (212)
57 PRK06922 hypothetical protein; 99.4 1E-12 2.2E-17 115.6 10.2 80 125-207 418-500 (677)
58 TIGR00080 pimt protein-L-isoas 99.4 3.3E-12 7.2E-17 100.0 11.1 89 118-208 69-160 (215)
59 PF08003 Methyltransf_9: Prote 99.4 3.5E-12 7.7E-17 102.4 9.6 90 125-216 115-204 (315)
60 TIGR02469 CbiT precorrin-6Y C5 99.4 6.2E-12 1.3E-16 89.5 9.9 88 118-207 11-101 (124)
61 KOG1541 Predicted protein carb 99.4 1.6E-12 3.5E-17 99.1 7.1 88 113-208 35-126 (270)
62 TIGR01983 UbiG ubiquinone bios 99.4 6.2E-12 1.4E-16 98.9 10.2 89 125-216 45-134 (224)
63 PRK05134 bifunctional 3-demeth 99.4 3.7E-12 8E-17 100.9 8.9 89 124-216 47-136 (233)
64 PLN03075 nicotianamine synthas 99.4 9.8E-12 2.1E-16 100.6 11.4 91 124-216 122-218 (296)
65 smart00138 MeTrc Methyltransfe 99.3 2.5E-12 5.4E-17 103.7 7.4 90 125-215 99-226 (264)
66 PLN02336 phosphoethanolamine N 99.3 3.9E-12 8.5E-17 110.9 7.9 86 125-215 37-126 (475)
67 TIGR00091 tRNA (guanine-N(7)-) 99.3 5.1E-12 1.1E-16 97.4 7.5 81 125-207 16-100 (194)
68 TIGR03840 TMPT_Se_Te thiopurin 99.3 7.2E-12 1.6E-16 97.8 7.2 85 125-210 34-129 (213)
69 KOG1271 Methyltransferases [Ge 99.3 4.1E-11 9E-16 88.9 10.5 80 127-207 69-149 (227)
70 smart00650 rADc Ribosomal RNA 99.3 2.2E-11 4.8E-16 91.9 9.0 84 117-205 4-88 (169)
71 PF13659 Methyltransf_26: Meth 99.3 1.7E-11 3.7E-16 86.5 7.6 80 126-206 1-82 (117)
72 PRK08287 cobalt-precorrin-6Y C 99.3 4E-11 8.6E-16 91.9 10.1 86 119-208 24-111 (187)
73 TIGR00537 hemK_rel_arch HemK-r 99.3 4.3E-11 9.4E-16 91.1 10.0 79 125-209 19-97 (179)
74 PRK00312 pcm protein-L-isoaspa 99.3 5.3E-11 1.1E-15 93.0 10.7 88 118-208 70-158 (212)
75 PF01135 PCMT: Protein-L-isoas 99.3 4E-11 8.8E-16 93.1 9.9 90 117-208 63-155 (209)
76 PRK14121 tRNA (guanine-N(7)-)- 99.3 3E-11 6.6E-16 101.2 9.8 87 118-206 114-204 (390)
77 TIGR03534 RF_mod_PrmC protein- 99.3 6.1E-11 1.3E-15 94.8 10.6 86 117-205 79-165 (251)
78 PRK00377 cbiT cobalt-precorrin 99.2 7.8E-11 1.7E-15 91.1 10.2 83 119-202 33-119 (198)
79 PRK13943 protein-L-isoaspartat 99.2 5.8E-11 1.2E-15 97.9 9.7 84 124-209 79-164 (322)
80 COG2518 Pcm Protein-L-isoaspar 99.2 7.3E-11 1.6E-15 90.4 9.5 90 117-209 63-153 (209)
81 PRK13255 thiopurine S-methyltr 99.2 4.8E-11 1.1E-15 93.5 8.7 82 124-209 36-131 (218)
82 TIGR02716 C20_methyl_CrtF C-20 99.2 6.5E-11 1.4E-15 97.6 9.6 95 118-216 141-239 (306)
83 COG4976 Predicted methyltransf 99.2 4.3E-12 9.2E-17 97.4 2.1 96 111-214 110-208 (287)
84 TIGR00406 prmA ribosomal prote 99.2 8.8E-11 1.9E-15 95.9 9.6 87 118-207 152-238 (288)
85 PF05175 MTS: Methyltransferas 99.2 3.3E-10 7.2E-15 85.5 11.6 81 125-208 31-112 (170)
86 PRK09489 rsmC 16S ribosomal RN 99.2 9.2E-11 2E-15 97.7 8.7 78 125-207 196-274 (342)
87 TIGR03533 L3_gln_methyl protei 99.2 2.1E-10 4.5E-15 93.5 10.6 75 125-201 121-196 (284)
88 PRK03522 rumB 23S rRNA methylu 99.2 1.7E-10 3.7E-15 95.4 9.7 74 125-201 173-247 (315)
89 PRK15001 SAM-dependent 23S rib 99.2 2.5E-10 5.3E-15 96.0 10.4 89 118-207 220-311 (378)
90 PRK14966 unknown domain/N5-glu 99.2 2.7E-10 5.8E-15 96.2 10.0 84 115-202 242-327 (423)
91 PRK14967 putative methyltransf 99.1 2.9E-10 6.3E-15 89.5 9.7 75 124-202 35-109 (223)
92 COG4123 Predicted O-methyltran 99.1 1.3E-10 2.9E-15 91.5 7.6 81 125-206 44-127 (248)
93 TIGR03438 probable methyltrans 99.1 3.7E-10 7.9E-15 92.9 10.3 96 112-209 51-153 (301)
94 PRK11188 rrmJ 23S rRNA methylt 99.1 1.9E-10 4.1E-15 89.7 8.2 73 124-209 50-132 (209)
95 PRK11805 N5-glutamine S-adenos 99.1 4E-10 8.7E-15 92.7 10.3 73 127-201 135-208 (307)
96 TIGR01177 conserved hypothetic 99.1 3.3E-10 7.2E-15 94.3 9.7 76 124-202 181-256 (329)
97 TIGR00536 hemK_fam HemK family 99.1 5.2E-10 1.1E-14 91.2 10.6 73 127-201 116-189 (284)
98 COG2263 Predicted RNA methylas 99.1 3.1E-10 6.7E-15 85.0 8.3 74 125-204 45-118 (198)
99 KOG3010 Methyltransferase [Gen 99.1 2.4E-11 5.2E-16 94.0 2.4 100 113-216 22-121 (261)
100 cd02440 AdoMet_MTases S-adenos 99.1 2.7E-10 5.9E-15 77.4 7.2 86 128-215 1-88 (107)
101 PRK14896 ksgA 16S ribosomal RN 99.1 5E-10 1.1E-14 90.1 9.5 84 115-205 18-102 (258)
102 PHA03411 putative methyltransf 99.1 2.9E-10 6.3E-15 90.9 7.7 77 125-209 64-141 (279)
103 COG2242 CobL Precorrin-6B meth 99.1 1.1E-09 2.3E-14 82.4 10.1 95 113-210 21-117 (187)
104 PRK13168 rumA 23S rRNA m(5)U19 99.1 5E-10 1.1E-14 96.8 9.6 85 114-201 285-374 (443)
105 COG2264 PrmA Ribosomal protein 99.1 4.8E-10 1E-14 90.7 8.1 84 117-202 154-237 (300)
106 PRK00274 ksgA 16S ribosomal RN 99.1 4.7E-10 1E-14 90.9 8.0 80 117-202 33-113 (272)
107 PRK14968 putative methyltransf 99.1 1.4E-09 3.1E-14 83.0 10.3 79 125-205 23-101 (188)
108 PRK00517 prmA ribosomal protei 99.1 5.8E-10 1.2E-14 89.4 8.4 73 124-205 118-190 (250)
109 PF06325 PrmA: Ribosomal prote 99.1 1.1E-09 2.3E-14 89.2 9.9 86 114-204 150-235 (295)
110 PTZ00338 dimethyladenosine tra 99.1 8.7E-10 1.9E-14 90.0 9.1 89 116-209 26-115 (294)
111 PRK07402 precorrin-6B methylas 99.1 1.8E-09 3.8E-14 83.4 10.3 81 118-200 32-115 (196)
112 KOG1499 Protein arginine N-met 99.0 1.8E-09 4E-14 88.1 9.9 82 124-207 59-140 (346)
113 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.3E-09 4.9E-14 82.8 9.7 77 125-203 53-130 (199)
114 PRK13256 thiopurine S-methyltr 99.0 1.1E-09 2.3E-14 85.9 7.4 86 124-210 42-140 (226)
115 PRK01544 bifunctional N5-gluta 99.0 1.8E-09 3.9E-14 94.6 8.9 76 125-202 138-214 (506)
116 PHA03412 putative methyltransf 99.0 1E-09 2.3E-14 85.9 6.2 75 125-207 49-127 (241)
117 PLN02232 ubiquinone biosynthes 99.0 7.3E-10 1.6E-14 82.8 5.0 66 152-217 1-67 (160)
118 COG2890 HemK Methylase of poly 99.0 4.5E-09 9.7E-14 85.4 9.9 71 128-202 113-184 (280)
119 PRK09328 N5-glutamine S-adenos 99.0 6.9E-09 1.5E-13 84.1 10.9 76 124-202 107-183 (275)
120 COG2813 RsmC 16S RNA G1207 met 98.9 6E-09 1.3E-13 84.0 9.2 89 118-210 150-240 (300)
121 PLN02781 Probable caffeoyl-CoA 98.9 6.9E-09 1.5E-13 82.3 9.3 76 125-201 68-151 (234)
122 KOG3420 Predicted RNA methylas 98.9 3.7E-09 8.1E-14 75.8 6.6 79 124-205 47-125 (185)
123 PRK15128 23S rRNA m(5)C1962 me 98.9 4.8E-09 1E-13 89.1 8.5 77 125-201 220-300 (396)
124 TIGR00479 rumA 23S rRNA (uraci 98.9 6.8E-09 1.5E-13 89.5 9.6 74 124-200 291-368 (431)
125 PRK04266 fibrillarin; Provisio 98.9 4.9E-09 1.1E-13 82.6 7.8 73 124-201 71-148 (226)
126 PRK14904 16S rRNA methyltransf 98.9 6E-09 1.3E-13 90.1 9.1 74 124-200 249-324 (445)
127 TIGR00755 ksgA dimethyladenosi 98.9 7.1E-09 1.5E-13 83.2 8.6 82 115-203 18-103 (253)
128 PRK11727 23S rRNA mA1618 methy 98.9 2E-08 4.3E-13 82.7 11.2 81 125-206 114-201 (321)
129 TIGR02085 meth_trns_rumB 23S r 98.9 9.4E-09 2E-13 87.0 9.5 74 125-201 233-307 (374)
130 PF01596 Methyltransf_3: O-met 98.9 2E-08 4.4E-13 77.8 10.6 88 112-202 34-129 (205)
131 TIGR03704 PrmC_rel_meth putati 98.9 1.5E-08 3.2E-13 81.2 10.2 72 126-202 87-161 (251)
132 PRK14903 16S rRNA methyltransf 98.9 7.9E-09 1.7E-13 88.9 9.0 75 124-200 236-313 (431)
133 TIGR00446 nop2p NOL1/NOP2/sun 98.9 6.9E-09 1.5E-13 83.8 8.2 75 124-200 70-146 (264)
134 PF02390 Methyltransf_4: Putat 98.9 1E-08 2.2E-13 79.0 8.7 79 126-206 18-100 (195)
135 PRK04457 spermidine synthase; 98.9 7.8E-09 1.7E-13 83.3 8.2 76 125-201 66-143 (262)
136 PRK14901 16S rRNA methyltransf 98.9 1.5E-08 3.2E-13 87.5 10.2 84 124-209 251-346 (434)
137 KOG2940 Predicted methyltransf 98.9 4.2E-09 9.1E-14 81.2 5.7 87 124-214 71-157 (325)
138 PRK00811 spermidine synthase; 98.9 1.5E-08 3.2E-13 82.7 9.2 80 124-203 75-159 (283)
139 PF03291 Pox_MCEL: mRNA cappin 98.9 1.6E-08 3.4E-13 83.9 9.4 85 125-210 62-161 (331)
140 PF05185 PRMT5: PRMT5 arginine 98.9 4.4E-08 9.6E-13 84.4 12.2 76 126-203 187-267 (448)
141 PRK10901 16S rRNA methyltransf 98.8 1.9E-08 4.1E-13 86.6 9.9 74 124-200 243-319 (427)
142 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.4E-08 3E-13 92.4 9.1 77 125-201 538-615 (702)
143 PRK14902 16S rRNA methyltransf 98.8 2.5E-08 5.4E-13 86.3 9.2 75 124-201 249-327 (444)
144 KOG1500 Protein arginine N-met 98.8 4.8E-08 1E-12 79.3 9.8 97 103-203 155-252 (517)
145 PLN02476 O-methyltransferase 98.8 6.9E-08 1.5E-12 77.9 10.5 77 125-202 118-202 (278)
146 TIGR00563 rsmB ribosomal RNA s 98.8 4.3E-08 9.2E-13 84.4 9.6 85 124-209 237-330 (426)
147 PRK04148 hypothetical protein; 98.8 3.8E-08 8.2E-13 70.6 7.6 71 125-205 16-88 (134)
148 TIGR00478 tly hemolysin TlyA f 98.7 2.6E-08 5.6E-13 78.3 6.9 83 124-215 74-163 (228)
149 PF01170 UPF0020: Putative RNA 98.7 6.7E-08 1.5E-12 73.5 8.8 80 124-204 27-116 (179)
150 PLN02366 spermidine synthase 98.7 1E-07 2.2E-12 78.4 10.4 79 124-202 90-173 (308)
151 PF05724 TPMT: Thiopurine S-me 98.7 4.3E-08 9.3E-13 76.8 7.8 92 117-209 28-131 (218)
152 TIGR00438 rrmJ cell division p 98.7 4.8E-08 1E-12 74.9 7.6 67 124-203 31-107 (188)
153 PLN02672 methionine S-methyltr 98.7 3.9E-08 8.4E-13 91.9 8.3 78 125-202 118-211 (1082)
154 KOG2904 Predicted methyltransf 98.7 1.7E-07 3.7E-12 74.2 10.4 91 112-203 131-231 (328)
155 COG4122 Predicted O-methyltran 98.7 1.1E-07 2.3E-12 74.0 9.2 87 112-201 48-139 (219)
156 PTZ00146 fibrillarin; Provisio 98.7 4.9E-08 1.1E-12 79.0 7.5 76 124-203 131-211 (293)
157 KOG1975 mRNA cap methyltransfe 98.7 4E-08 8.8E-13 79.3 6.8 91 117-207 109-209 (389)
158 PRK00050 16S rRNA m(4)C1402 me 98.7 6.4E-08 1.4E-12 78.8 7.8 92 117-212 10-110 (296)
159 PF00891 Methyltransf_2: O-met 98.7 2.3E-07 5E-12 73.8 10.9 76 124-211 99-175 (241)
160 TIGR00095 RNA methyltransferas 98.7 1.7E-07 3.6E-12 72.0 9.6 75 125-200 49-127 (189)
161 PRK03612 spermidine synthase; 98.7 4.9E-08 1.1E-12 86.0 7.6 81 124-204 296-383 (521)
162 PF08704 GCD14: tRNA methyltra 98.7 2.7E-07 5.9E-12 73.3 11.0 83 117-200 31-119 (247)
163 PF02475 Met_10: Met-10+ like- 98.7 1.8E-07 3.8E-12 72.2 9.5 84 117-203 94-178 (200)
164 TIGR02143 trmA_only tRNA (urac 98.7 8.6E-08 1.9E-12 80.5 8.4 60 126-188 198-257 (353)
165 PRK05031 tRNA (uracil-5-)-meth 98.7 9.9E-08 2.1E-12 80.4 8.7 60 126-188 207-266 (362)
166 COG2519 GCD14 tRNA(1-methylade 98.7 1.7E-07 3.6E-12 73.7 9.0 82 117-200 85-169 (256)
167 PF10294 Methyltransf_16: Puta 98.6 8E-08 1.7E-12 72.7 6.6 86 124-211 44-136 (173)
168 PRK01581 speE spermidine synth 98.6 2E-07 4.3E-12 77.6 9.1 79 124-202 149-234 (374)
169 KOG0820 Ribosomal RNA adenine 98.6 1.6E-07 3.5E-12 74.2 8.1 86 113-202 45-131 (315)
170 PLN02589 caffeoyl-CoA O-methyl 98.6 2E-07 4.4E-12 74.2 8.7 86 113-201 69-163 (247)
171 COG0030 KsgA Dimethyladenosine 98.6 2E-07 4.3E-12 74.2 8.3 88 115-208 19-108 (259)
172 COG0220 Predicted S-adenosylme 98.6 1.2E-07 2.7E-12 74.4 7.0 79 127-207 50-132 (227)
173 COG2265 TrmA SAM-dependent met 98.6 3.3E-07 7.2E-12 78.6 10.1 73 125-200 293-368 (432)
174 PF05958 tRNA_U5-meth_tr: tRNA 98.6 4.6E-07 1E-11 76.1 10.8 72 114-188 185-256 (352)
175 TIGR00417 speE spermidine synt 98.6 4.2E-07 9.1E-12 73.7 9.4 79 125-203 72-154 (270)
176 KOG2361 Predicted methyltransf 98.6 1.2E-07 2.7E-12 73.7 5.8 80 126-208 72-158 (264)
177 PF09445 Methyltransf_15: RNA 98.6 1.5E-07 3.2E-12 70.0 5.6 72 128-201 2-76 (163)
178 PF06080 DUF938: Protein of un 98.5 3.7E-07 8E-12 70.1 7.8 81 128-209 28-117 (204)
179 PF05891 Methyltransf_PK: AdoM 98.5 2.2E-07 4.8E-12 71.7 6.2 85 125-211 55-139 (218)
180 KOG3191 Predicted N6-DNA-methy 98.5 2.2E-06 4.8E-11 64.0 10.5 73 125-201 43-117 (209)
181 PF12147 Methyltransf_20: Puta 98.5 4.7E-06 1E-10 66.9 12.8 102 109-211 117-226 (311)
182 PF05219 DREV: DREV methyltran 98.5 2.3E-07 5.1E-12 73.3 5.0 80 125-216 94-173 (265)
183 PF13679 Methyltransf_32: Meth 98.4 1.4E-06 3.1E-11 63.6 8.5 79 124-203 24-108 (141)
184 KOG1661 Protein-L-isoaspartate 98.4 1.2E-06 2.6E-11 66.9 8.2 84 124-207 81-175 (237)
185 PF02527 GidB: rRNA small subu 98.4 5.8E-06 1.3E-10 63.0 11.8 74 127-203 50-124 (184)
186 COG3963 Phospholipid N-methylt 98.4 1.1E-06 2.4E-11 64.7 7.2 78 124-208 47-131 (194)
187 COG1041 Predicted DNA modifica 98.4 1.2E-06 2.7E-11 72.0 8.0 74 124-200 196-270 (347)
188 PRK01544 bifunctional N5-gluta 98.4 1.2E-06 2.5E-11 77.1 7.2 82 124-207 346-430 (506)
189 PRK04338 N(2),N(2)-dimethylgua 98.4 1E-06 2.2E-11 74.6 6.7 74 126-201 58-132 (382)
190 PF00398 RrnaAD: Ribosomal RNA 98.3 3.7E-06 8E-11 67.9 8.8 84 114-202 18-105 (262)
191 PF09243 Rsm22: Mitochondrial 98.3 6E-06 1.3E-10 67.0 9.8 96 111-209 18-117 (274)
192 KOG1269 SAM-dependent methyltr 98.3 1.2E-06 2.6E-11 73.4 5.3 93 124-217 109-201 (364)
193 PF03602 Cons_hypoth95: Conser 98.3 4.9E-06 1.1E-10 63.5 8.0 76 125-201 42-121 (183)
194 COG2520 Predicted methyltransf 98.3 6.5E-06 1.4E-10 68.2 9.1 88 115-204 179-266 (341)
195 KOG1331 Predicted methyltransf 98.3 6.9E-07 1.5E-11 71.2 3.3 84 115-210 36-119 (293)
196 PLN02823 spermine synthase 98.2 6.5E-06 1.4E-10 68.5 8.6 78 124-201 102-183 (336)
197 PF01739 CheR: CheR methyltran 98.2 2E-06 4.3E-11 66.2 4.6 86 124-210 30-152 (196)
198 PF10672 Methyltrans_SAM: S-ad 98.2 8.6E-06 1.9E-10 66.2 8.5 76 125-200 123-201 (286)
199 COG1092 Predicted SAM-dependen 98.2 8.3E-06 1.8E-10 68.9 8.2 76 125-200 217-296 (393)
200 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.4E-05 3.1E-10 73.0 10.1 77 125-202 190-311 (702)
201 PF05148 Methyltransf_8: Hypot 98.2 2.3E-06 4.9E-11 65.6 4.1 81 116-216 61-143 (219)
202 COG0357 GidB Predicted S-adeno 98.1 1.8E-05 4E-10 61.5 9.0 86 114-202 50-143 (215)
203 PF04816 DUF633: Family of unk 98.1 8.1E-06 1.8E-10 63.3 6.9 73 129-203 1-75 (205)
204 PF08123 DOT1: Histone methyla 98.1 2.6E-06 5.7E-11 66.0 4.2 91 114-204 30-132 (205)
205 COG0116 Predicted N6-adenine-s 98.1 1.5E-05 3.3E-10 66.6 8.9 78 124-202 190-307 (381)
206 KOG2187 tRNA uracil-5-methyltr 98.1 5.4E-06 1.2E-10 71.1 5.9 62 124-188 382-443 (534)
207 TIGR01444 fkbM_fam methyltrans 98.1 1E-05 2.2E-10 58.9 6.7 58 128-187 1-59 (143)
208 PF07091 FmrO: Ribosomal RNA m 98.1 2.2E-05 4.8E-10 62.0 8.6 81 124-208 104-185 (251)
209 COG4076 Predicted RNA methylas 98.1 1.5E-05 3.3E-10 59.9 6.8 72 125-201 32-103 (252)
210 PRK10611 chemotaxis methyltran 98.0 4.7E-06 1E-10 67.8 3.8 85 125-210 115-239 (287)
211 COG3897 Predicted methyltransf 98.0 1.7E-05 3.8E-10 60.0 6.3 83 124-212 78-160 (218)
212 KOG2352 Predicted spermine/spe 98.0 3.4E-05 7.3E-10 66.0 8.1 83 127-212 50-132 (482)
213 KOG3045 Predicted RNA methylas 98.0 1.3E-05 2.9E-10 63.2 5.2 79 116-216 169-249 (325)
214 COG1352 CheR Methylase of chem 98.0 3.6E-05 7.9E-10 61.9 7.8 87 125-211 96-219 (268)
215 KOG2915 tRNA(1-methyladenosine 98.0 8.8E-05 1.9E-09 59.0 9.6 84 116-200 95-183 (314)
216 KOG2899 Predicted methyltransf 98.0 2.3E-05 4.9E-10 61.3 6.2 46 124-169 57-103 (288)
217 TIGR03439 methyl_EasF probable 97.9 8.7E-05 1.9E-09 61.4 9.9 97 114-211 66-174 (319)
218 COG0742 N6-adenine-specific me 97.9 7.1E-05 1.5E-09 56.7 8.2 76 125-201 43-121 (187)
219 PF02384 N6_Mtase: N-6 DNA Met 97.9 3.6E-05 7.8E-10 63.6 7.3 82 124-205 45-136 (311)
220 PF01564 Spermine_synth: Sperm 97.9 0.00011 2.3E-09 58.8 9.4 77 124-200 75-156 (246)
221 COG0421 SpeE Spermidine syntha 97.9 7.5E-05 1.6E-09 60.7 8.1 78 124-201 75-156 (282)
222 PRK11933 yebU rRNA (cytosine-C 97.9 7E-05 1.5E-09 65.1 8.4 74 124-199 112-188 (470)
223 TIGR00308 TRM1 tRNA(guanine-26 97.9 3.8E-05 8.3E-10 64.9 6.5 73 126-200 45-120 (374)
224 COG2384 Predicted SAM-dependen 97.8 0.00014 3.1E-09 56.2 8.7 78 125-203 16-94 (226)
225 PF03141 Methyltransf_29: Puta 97.8 8.3E-06 1.8E-10 70.0 2.0 71 127-207 119-194 (506)
226 KOG2730 Methylase [General fun 97.8 4.4E-05 9.4E-10 58.9 4.9 74 125-200 94-171 (263)
227 TIGR00006 S-adenosyl-methyltra 97.8 0.00022 4.8E-09 58.5 9.4 93 117-212 11-112 (305)
228 COG0500 SmtA SAM-dependent met 97.7 0.00014 3.1E-09 52.4 7.3 76 129-207 52-132 (257)
229 PRK00536 speE spermidine synth 97.7 0.00029 6.3E-09 56.6 9.3 74 124-201 71-146 (262)
230 KOG4058 Uncharacterized conser 97.7 0.00013 2.7E-09 52.9 6.2 102 97-199 43-145 (199)
231 PF05971 Methyltransf_10: Prot 97.7 0.00026 5.6E-09 57.8 8.8 82 126-208 103-191 (299)
232 PF11968 DUF3321: Putative met 97.7 6.6E-05 1.4E-09 58.0 4.9 68 126-212 52-122 (219)
233 PRK11760 putative 23S rRNA C24 97.7 0.00011 2.4E-09 60.8 6.1 70 124-203 210-279 (357)
234 KOG1663 O-methyltransferase [S 97.7 0.00065 1.4E-08 52.9 9.9 86 112-200 62-155 (237)
235 COG0293 FtsJ 23S rRNA methylas 97.7 0.00034 7.4E-09 53.8 8.3 76 114-202 32-119 (205)
236 COG2521 Predicted archaeal met 97.6 1.8E-05 3.9E-10 61.6 1.0 77 124-200 133-211 (287)
237 TIGR02987 met_A_Alw26 type II 97.4 0.00033 7.1E-09 62.1 6.0 80 125-206 31-124 (524)
238 KOG3987 Uncharacterized conser 97.4 1.3E-05 2.8E-10 61.3 -2.4 79 125-215 112-190 (288)
239 COG0144 Sun tRNA and rRNA cyto 97.4 0.0016 3.6E-08 54.8 9.7 75 124-200 155-235 (355)
240 PF01728 FtsJ: FtsJ-like methy 97.3 0.00018 4E-09 54.6 3.3 68 125-205 23-102 (181)
241 PF03059 NAS: Nicotianamine sy 97.3 0.0016 3.4E-08 52.7 8.7 80 125-205 120-203 (276)
242 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0023 4.9E-08 52.3 8.6 75 124-200 84-162 (283)
243 KOG1501 Arginine N-methyltrans 97.2 0.00074 1.6E-08 57.3 5.5 58 125-183 66-123 (636)
244 PHA01634 hypothetical protein 97.1 0.005 1.1E-07 43.6 8.4 48 124-171 27-74 (156)
245 PRK10742 putative methyltransf 97.0 0.004 8.6E-08 49.5 8.0 79 128-207 91-177 (250)
246 COG0275 Predicted S-adenosylme 97.0 0.0065 1.4E-07 49.4 9.0 84 116-202 13-104 (314)
247 COG4262 Predicted spermidine s 97.0 0.0024 5.2E-08 53.1 6.4 76 125-200 289-371 (508)
248 PF01795 Methyltransf_5: MraW 96.9 0.0022 4.8E-08 52.7 5.7 92 118-212 12-113 (310)
249 COG1565 Uncharacterized conser 96.9 0.0058 1.3E-07 50.9 7.8 63 109-171 60-132 (370)
250 KOG3115 Methyltransferase-like 96.8 0.0046 1E-07 47.4 6.6 63 125-187 60-128 (249)
251 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.8 0.0075 1.6E-07 48.4 8.0 85 124-208 55-172 (256)
252 PF02636 Methyltransf_28: Puta 96.8 0.0032 7E-08 50.5 5.8 77 126-208 19-109 (252)
253 KOG4589 Cell division protein 96.7 0.0053 1.1E-07 46.5 6.2 66 124-202 68-144 (232)
254 KOG3178 Hydroxyindole-O-methyl 96.7 0.007 1.5E-07 50.1 7.3 75 126-210 178-252 (342)
255 COG3129 Predicted SAM-dependen 96.7 0.01 2.2E-07 46.5 7.7 82 125-207 78-166 (292)
256 PF07942 N2227: N2227-like pro 96.7 0.017 3.6E-07 46.7 8.9 87 125-212 56-183 (270)
257 KOG1709 Guanidinoacetate methy 96.6 0.0091 2E-07 46.3 6.8 74 124-200 100-175 (271)
258 PF04672 Methyltransf_19: S-ad 96.6 0.02 4.3E-07 46.1 8.9 81 127-209 70-165 (267)
259 PF13578 Methyltransf_24: Meth 96.5 0.0009 1.9E-08 46.1 0.8 70 130-201 1-76 (106)
260 KOG0822 Protein kinase inhibit 96.5 0.012 2.6E-07 51.2 7.6 100 99-200 337-445 (649)
261 KOG2651 rRNA adenine N-6-methy 96.2 0.022 4.7E-07 47.8 7.1 55 111-167 141-195 (476)
262 KOG2671 Putative RNA methylase 96.1 0.0069 1.5E-07 50.0 4.0 76 124-200 207-290 (421)
263 PF01555 N6_N4_Mtase: DNA meth 96.1 0.015 3.3E-07 45.2 5.7 54 112-166 178-231 (231)
264 PRK11524 putative methyltransf 96.1 0.024 5.2E-07 46.3 6.9 58 112-170 195-252 (284)
265 PRK13699 putative methylase; P 96.0 0.031 6.7E-07 44.1 7.1 58 113-171 151-208 (227)
266 KOG1122 tRNA and rRNA cytosine 95.9 0.035 7.6E-07 47.2 7.3 74 124-200 240-318 (460)
267 COG1189 Predicted rRNA methyla 95.9 0.021 4.6E-07 44.9 5.5 76 124-207 78-157 (245)
268 PF01269 Fibrillarin: Fibrilla 95.8 0.13 2.7E-06 40.3 9.5 74 124-201 72-150 (229)
269 PF04445 SAM_MT: Putative SAM- 95.7 0.039 8.4E-07 43.6 6.3 79 127-206 77-163 (234)
270 KOG2793 Putative N2,N2-dimethy 95.7 0.047 1E-06 43.5 6.8 87 125-213 86-181 (248)
271 PF03492 Methyltransf_7: SAM d 95.6 0.047 1E-06 45.7 7.0 87 124-210 15-123 (334)
272 PF01861 DUF43: Protein of unk 95.5 0.24 5.2E-06 39.2 10.1 74 124-200 43-118 (243)
273 cd00315 Cyt_C5_DNA_methylase C 95.5 0.039 8.4E-07 44.9 5.8 67 128-202 2-70 (275)
274 PLN02668 indole-3-acetate carb 95.4 0.054 1.2E-06 46.1 6.7 87 125-211 63-179 (386)
275 PF07757 AdoMet_MTase: Predict 95.4 0.013 2.8E-07 40.3 2.4 32 125-157 58-89 (112)
276 PTZ00357 methyltransferase; Pr 95.2 0.22 4.7E-06 45.3 10.0 74 127-200 702-798 (1072)
277 PF02005 TRM: N2,N2-dimethylgu 95.2 0.085 1.8E-06 44.9 7.3 75 125-199 49-126 (377)
278 PF06962 rRNA_methylase: Putat 95.1 0.089 1.9E-06 38.2 6.2 52 150-202 1-54 (140)
279 KOG3201 Uncharacterized conser 94.7 0.026 5.6E-07 41.9 2.5 81 125-205 29-114 (201)
280 COG1889 NOP1 Fibrillarin-like 94.4 0.23 5E-06 38.3 6.9 73 124-200 75-151 (231)
281 COG1064 AdhP Zn-dependent alco 93.6 0.19 4.2E-06 41.9 5.8 72 124-203 165-238 (339)
282 COG0286 HsdM Type I restrictio 93.5 0.28 6.1E-06 43.3 7.0 89 115-204 175-274 (489)
283 PF04989 CmcI: Cephalosporin h 93.5 0.1 2.3E-06 40.4 3.8 66 118-188 27-97 (206)
284 PF11599 AviRa: RRNA methyltra 93.4 0.15 3.2E-06 39.7 4.4 46 124-169 50-98 (246)
285 COG1867 TRM1 N2,N2-dimethylgua 93.1 0.26 5.7E-06 41.4 5.7 72 126-199 53-126 (380)
286 KOG1227 Putative methyltransfe 93.0 0.065 1.4E-06 43.6 2.0 75 124-200 193-268 (351)
287 PF03686 UPF0146: Uncharacteri 92.6 0.27 5.9E-06 34.9 4.5 66 125-203 13-79 (127)
288 KOG2920 Predicted methyltransf 92.5 0.2 4.3E-06 40.6 4.2 41 121-161 112-152 (282)
289 COG5459 Predicted rRNA methyla 91.4 0.93 2E-05 38.1 6.9 82 124-207 112-198 (484)
290 KOG1562 Spermidine synthase [A 91.1 0.75 1.6E-05 37.6 6.0 77 124-200 120-201 (337)
291 COG3510 CmcI Cephalosporin hyd 91.0 0.42 9.2E-06 36.6 4.3 77 125-208 69-157 (237)
292 PF00145 DNA_methylase: C-5 cy 91.0 0.43 9.4E-06 39.3 4.9 65 128-202 2-69 (335)
293 PF03514 GRAS: GRAS domain fam 90.7 3.2 7E-05 35.3 9.9 90 117-209 101-215 (374)
294 KOG2078 tRNA modification enzy 90.5 0.31 6.8E-06 41.7 3.6 66 122-188 246-311 (495)
295 PF02254 TrkA_N: TrkA-N domain 90.3 0.72 1.6E-05 31.8 4.8 59 134-201 4-69 (116)
296 PF05206 TRM13: Methyltransfer 90.1 0.81 1.7E-05 36.9 5.5 64 124-189 17-86 (259)
297 KOG3924 Putative protein methy 89.0 0.92 2E-05 38.5 5.1 100 105-204 171-282 (419)
298 PRK07904 short chain dehydroge 88.5 2.6 5.7E-05 33.5 7.4 79 124-204 6-97 (253)
299 KOG2539 Mitochondrial/chloropl 88.4 0.62 1.3E-05 40.4 3.8 85 124-211 199-291 (491)
300 COG1255 Uncharacterized protei 87.9 0.87 1.9E-05 31.8 3.6 64 125-201 13-77 (129)
301 COG1568 Predicted methyltransf 87.8 1.5 3.3E-05 35.6 5.4 73 125-200 152-227 (354)
302 KOG1098 Putative SAM-dependent 87.8 1.4 3.1E-05 39.6 5.7 35 124-158 43-79 (780)
303 PF11899 DUF3419: Protein of u 87.3 1.9 4E-05 36.9 6.1 45 124-169 34-78 (380)
304 PF05050 Methyltransf_21: Meth 86.6 1.3 2.8E-05 32.4 4.3 37 131-167 1-42 (167)
305 KOG0821 Predicted ribosomal RN 86.3 4.8 0.0001 31.7 7.2 69 117-188 41-110 (326)
306 TIGR00675 dcm DNA-methyltransf 85.9 1.3 2.9E-05 36.7 4.4 65 129-201 1-66 (315)
307 PF00106 adh_short: short chai 85.5 3.1 6.7E-05 30.3 5.9 76 128-206 2-92 (167)
308 PF07279 DUF1442: Protein of u 85.2 8.4 0.00018 30.1 8.2 75 125-200 41-121 (218)
309 PLN02918 pyridoxine (pyridoxam 83.5 16 0.00036 32.7 10.3 45 127-173 136-190 (544)
310 KOG1201 Hydroxysteroid 17-beta 83.4 6.1 0.00013 32.5 7.0 80 124-208 36-128 (300)
311 KOG1253 tRNA methyltransferase 83.4 0.47 1E-05 41.4 0.7 74 125-199 109-188 (525)
312 COG4301 Uncharacterized conser 83.0 14 0.00031 29.7 8.7 62 125-187 78-144 (321)
313 KOG1596 Fibrillarin and relate 83.0 4.3 9.2E-05 32.4 5.8 56 124-187 155-216 (317)
314 PRK07454 short chain dehydroge 83.0 8 0.00017 30.1 7.6 77 125-205 5-94 (241)
315 KOG0024 Sorbitol dehydrogenase 82.6 2.1 4.5E-05 35.6 4.1 43 124-166 168-212 (354)
316 cd08283 FDH_like_1 Glutathione 82.5 2.1 4.5E-05 36.4 4.3 44 124-167 183-228 (386)
317 COG1086 Predicted nucleoside-d 82.2 15 0.00033 33.0 9.4 83 125-209 249-340 (588)
318 PRK09496 trkA potassium transp 82.2 3.3 7.1E-05 35.9 5.6 68 125-201 230-304 (453)
319 PF03141 Methyltransf_29: Puta 82.2 1.6 3.5E-05 38.2 3.5 78 125-209 365-442 (506)
320 PF02719 Polysacc_synt_2: Poly 82.1 2.8 6E-05 34.4 4.7 75 133-208 4-91 (293)
321 PF01488 Shikimate_DH: Shikima 81.5 4.4 9.5E-05 29.0 5.1 76 125-207 11-88 (135)
322 PRK06124 gluconate 5-dehydroge 81.4 9.1 0.0002 30.1 7.5 76 125-204 10-98 (256)
323 PF12692 Methyltransf_17: S-ad 80.9 7.7 0.00017 28.5 6.0 41 117-157 20-61 (160)
324 PRK07523 gluconate 5-dehydroge 80.5 9.3 0.0002 30.1 7.3 77 125-205 9-98 (255)
325 PRK08703 short chain dehydroge 80.4 11 0.00024 29.3 7.6 77 125-204 5-97 (239)
326 COG0270 Dcm Site-specific DNA 80.1 6.8 0.00015 32.7 6.5 70 126-202 3-75 (328)
327 PRK09291 short chain dehydroge 79.6 12 0.00027 29.3 7.7 74 127-204 3-83 (257)
328 PF04072 LCM: Leucine carboxyl 79.1 5.7 0.00012 30.1 5.3 84 125-209 77-172 (183)
329 PRK06139 short chain dehydroge 79.1 8.2 0.00018 32.2 6.7 77 125-205 6-95 (330)
330 PRK03659 glutathione-regulated 79.0 4.3 9.3E-05 36.9 5.3 63 127-200 401-470 (601)
331 TIGR00497 hsdM type I restrict 78.7 8.2 0.00018 34.3 6.9 79 125-203 217-302 (501)
332 COG5379 BtaA S-adenosylmethion 78.7 6.9 0.00015 32.2 5.7 45 124-169 62-106 (414)
333 PRK05867 short chain dehydroge 78.0 12 0.00025 29.5 7.1 78 125-206 8-98 (253)
334 PRK10669 putative cation:proto 77.9 4.9 0.00011 36.1 5.3 63 127-200 418-487 (558)
335 PRK08213 gluconate 5-dehydroge 77.5 14 0.0003 29.2 7.4 76 125-204 11-99 (259)
336 PRK06172 short chain dehydroge 77.5 13 0.00028 29.1 7.2 76 125-204 6-94 (253)
337 PRK07814 short chain dehydroge 77.4 15 0.00032 29.1 7.6 75 125-203 9-96 (263)
338 PRK05854 short chain dehydroge 77.3 19 0.00041 29.6 8.3 79 125-205 13-104 (313)
339 COG0863 DNA modification methy 77.1 10 0.00022 30.7 6.7 58 113-171 210-267 (302)
340 PRK06949 short chain dehydroge 77.0 15 0.00032 28.9 7.4 76 125-204 8-96 (258)
341 KOG2872 Uroporphyrinogen decar 76.8 13 0.00028 30.5 6.8 39 126-165 251-289 (359)
342 PRK13394 3-hydroxybutyrate deh 76.8 12 0.00026 29.4 6.9 78 125-206 6-96 (262)
343 COG4017 Uncharacterized protei 76.6 11 0.00023 29.2 5.9 69 124-207 43-112 (254)
344 PRK06720 hypothetical protein; 76.3 18 0.00039 27.0 7.3 78 125-206 15-105 (169)
345 PRK09880 L-idonate 5-dehydroge 76.2 5 0.00011 33.4 4.7 43 124-166 168-212 (343)
346 PRK09424 pntA NAD(P) transhydr 76.1 4.2 9.1E-05 36.2 4.3 42 125-166 164-206 (509)
347 PRK07326 short chain dehydroge 75.9 16 0.00034 28.3 7.2 76 125-205 5-93 (237)
348 TIGR00561 pntA NAD(P) transhyd 75.9 4.6 0.0001 35.9 4.5 42 125-166 163-205 (511)
349 PRK07062 short chain dehydroge 75.9 23 0.00049 28.0 8.3 79 125-205 7-98 (265)
350 PRK07063 short chain dehydroge 75.6 16 0.00035 28.8 7.3 79 125-205 6-97 (260)
351 PRK07677 short chain dehydroge 75.6 15 0.00032 28.8 7.1 73 127-203 2-87 (252)
352 PRK07666 fabG 3-ketoacyl-(acyl 75.4 18 0.00038 28.1 7.4 77 125-205 6-95 (239)
353 PRK03562 glutathione-regulated 75.0 7.5 0.00016 35.5 5.7 67 126-201 400-471 (621)
354 PRK08267 short chain dehydroge 75.0 12 0.00026 29.5 6.5 73 127-205 2-88 (260)
355 PRK07890 short chain dehydroge 74.8 18 0.00039 28.4 7.3 76 125-204 4-92 (258)
356 PRK06194 hypothetical protein; 74.7 15 0.00033 29.4 7.0 78 125-206 5-95 (287)
357 PRK10458 DNA cytosine methylas 74.5 11 0.00023 33.3 6.3 60 126-189 88-147 (467)
358 COG0569 TrkA K+ transport syst 74.4 13 0.00028 29.2 6.3 67 128-201 2-73 (225)
359 PRK07576 short chain dehydroge 74.3 19 0.00041 28.6 7.4 75 125-203 8-95 (264)
360 PRK07102 short chain dehydroge 74.0 17 0.00037 28.3 7.0 74 127-203 2-85 (243)
361 COG1748 LYS9 Saccharopine dehy 73.5 7.6 0.00016 33.3 5.0 73 127-206 2-80 (389)
362 PRK07035 short chain dehydroge 73.4 18 0.0004 28.3 7.1 75 125-203 7-94 (252)
363 PRK12826 3-ketoacyl-(acyl-carr 73.2 21 0.00045 27.7 7.3 78 125-206 5-95 (251)
364 PRK05876 short chain dehydroge 73.0 18 0.0004 29.0 7.1 77 125-205 5-94 (275)
365 PRK08862 short chain dehydroge 72.1 20 0.00043 28.0 6.9 75 125-203 4-92 (227)
366 TIGR02356 adenyl_thiF thiazole 72.1 11 0.00024 29.0 5.3 33 125-157 20-54 (202)
367 cd01065 NAD_bind_Shikimate_DH 72.1 21 0.00045 25.7 6.7 44 125-168 18-63 (155)
368 PRK09496 trkA potassium transp 71.9 18 0.00039 31.3 7.2 64 128-201 2-72 (453)
369 COG4798 Predicted methyltransf 71.3 9.9 0.00022 29.4 4.7 76 124-202 47-130 (238)
370 cd05188 MDR Medium chain reduc 71.3 8.2 0.00018 30.2 4.6 43 124-166 133-176 (271)
371 PRK07097 gluconate 5-dehydroge 71.2 23 0.00049 28.1 7.2 77 125-205 9-98 (265)
372 PRK12429 3-hydroxybutyrate deh 71.2 23 0.00049 27.7 7.2 79 125-207 3-94 (258)
373 KOG2198 tRNA cytosine-5-methyl 71.1 22 0.00047 30.2 7.0 75 124-200 154-242 (375)
374 PRK05866 short chain dehydroge 71.0 21 0.00046 29.0 7.1 77 125-205 39-128 (293)
375 PF12242 Eno-Rase_NADH_b: NAD( 71.0 17 0.00036 23.5 4.9 34 124-157 37-73 (78)
376 TIGR01963 PHB_DH 3-hydroxybuty 70.8 24 0.00052 27.5 7.2 74 127-204 2-88 (255)
377 PRK08339 short chain dehydroge 70.7 25 0.00054 28.0 7.3 77 125-204 7-95 (263)
378 PRK08643 acetoin reductase; Va 70.7 25 0.00054 27.6 7.3 75 126-204 2-89 (256)
379 PRK07478 short chain dehydroge 70.6 25 0.00054 27.5 7.3 76 125-204 5-93 (254)
380 PRK06181 short chain dehydroge 70.6 24 0.00053 27.7 7.3 76 127-206 2-90 (263)
381 PRK12939 short chain dehydroge 70.4 24 0.00053 27.3 7.2 76 125-204 6-94 (250)
382 PRK06113 7-alpha-hydroxysteroi 70.4 24 0.00052 27.7 7.1 76 125-204 10-98 (255)
383 PRK07453 protochlorophyllide o 70.2 18 0.00039 29.8 6.6 76 125-204 5-93 (322)
384 PRK08217 fabG 3-ketoacyl-(acyl 70.0 18 0.0004 28.1 6.4 75 125-203 4-91 (253)
385 PRK12829 short chain dehydroge 69.7 28 0.00061 27.3 7.4 74 125-204 10-96 (264)
386 cd08254 hydroxyacyl_CoA_DH 6-h 69.7 8.5 0.00018 31.5 4.5 43 124-166 164-207 (338)
387 PRK06196 oxidoreductase; Provi 69.7 26 0.00057 28.7 7.4 72 125-204 25-109 (315)
388 PRK01438 murD UDP-N-acetylmura 69.5 28 0.0006 30.6 7.9 73 125-205 15-89 (480)
389 TIGR03206 benzo_BadH 2-hydroxy 69.0 30 0.00065 26.9 7.4 76 125-204 2-90 (250)
390 KOG2811 Uncharacterized conser 68.8 7.4 0.00016 32.9 3.8 61 125-188 182-246 (420)
391 PRK05786 fabG 3-ketoacyl-(acyl 68.7 30 0.00065 26.7 7.3 74 125-203 4-90 (238)
392 COG0686 Ald Alanine dehydrogen 68.7 10 0.00022 31.5 4.6 80 125-210 167-247 (371)
393 PRK08945 putative oxoacyl-(acy 68.3 27 0.00058 27.2 7.0 77 125-204 11-102 (247)
394 PRK07774 short chain dehydroge 68.2 32 0.00069 26.8 7.4 76 125-204 5-93 (250)
395 PRK08251 short chain dehydroge 68.2 32 0.00069 26.7 7.4 78 126-205 2-92 (248)
396 PRK05653 fabG 3-ketoacyl-(acyl 67.8 32 0.00068 26.5 7.3 76 125-204 4-92 (246)
397 PRK07109 short chain dehydroge 67.3 28 0.0006 29.0 7.1 76 125-204 7-95 (334)
398 KOG1099 SAM-dependent methyltr 67.1 24 0.00052 28.1 6.1 65 126-203 42-124 (294)
399 PRK07688 thiamine/molybdopteri 67.0 18 0.0004 30.3 6.0 75 125-201 23-123 (339)
400 PRK08644 thiamine biosynthesis 66.9 33 0.00071 26.7 7.0 33 125-157 27-61 (212)
401 TIGR03201 dearomat_had 6-hydro 66.6 10 0.00022 31.6 4.5 43 124-166 165-208 (349)
402 TIGR02622 CDP_4_6_dhtase CDP-g 66.2 18 0.00039 30.1 5.9 75 125-204 3-85 (349)
403 PRK09072 short chain dehydroge 66.0 31 0.00068 27.2 7.0 77 125-206 4-92 (263)
404 TIGR01832 kduD 2-deoxy-D-gluco 65.9 36 0.00077 26.5 7.3 75 125-205 4-91 (248)
405 PRK05855 short chain dehydroge 65.9 33 0.00072 30.4 7.8 78 125-206 314-404 (582)
406 PF02086 MethyltransfD12: D12 65.6 17 0.00037 28.7 5.4 53 116-169 10-63 (260)
407 PRK06125 short chain dehydroge 65.4 39 0.00085 26.5 7.5 77 125-204 6-91 (259)
408 PF03721 UDPG_MGDP_dh_N: UDP-g 65.2 7.1 0.00015 29.7 2.9 20 146-165 21-40 (185)
409 PRK12475 thiamine/molybdopteri 65.0 22 0.00047 29.9 6.1 76 125-201 23-123 (338)
410 PRK08277 D-mannonate oxidoredu 64.9 34 0.00074 27.2 7.1 76 125-204 9-97 (278)
411 PRK15116 sulfur acceptor prote 64.7 76 0.0016 25.8 9.4 38 118-157 24-63 (268)
412 PF02737 3HCDH_N: 3-hydroxyacy 64.6 12 0.00025 28.4 4.0 41 129-170 2-44 (180)
413 PLN02819 lysine-ketoglutarate 64.4 10 0.00022 36.9 4.3 73 125-204 568-658 (1042)
414 cd00401 AdoHcyase S-adenosyl-L 64.4 17 0.00036 31.5 5.3 43 124-166 200-243 (413)
415 PRK08589 short chain dehydroge 64.4 32 0.0007 27.4 6.8 76 125-205 5-93 (272)
416 PRK06914 short chain dehydroge 64.3 31 0.00066 27.5 6.7 77 126-204 3-91 (280)
417 COG0300 DltE Short-chain dehyd 64.2 58 0.0012 26.4 8.0 82 125-209 5-99 (265)
418 PRK12384 sorbitol-6-phosphate 64.1 39 0.00085 26.5 7.2 77 126-204 2-91 (259)
419 PRK10310 PTS system galactitol 63.4 22 0.00048 23.7 4.8 52 132-202 7-58 (94)
420 PRK08085 gluconate 5-dehydroge 63.3 44 0.00096 26.1 7.4 76 125-204 8-96 (254)
421 TIGR00518 alaDH alanine dehydr 63.0 9.6 0.00021 32.4 3.6 42 125-166 166-208 (370)
422 PF07101 DUF1363: Protein of u 62.8 3.3 7.2E-05 27.7 0.6 16 129-144 6-21 (124)
423 PRK05650 short chain dehydroge 62.7 40 0.00086 26.7 7.1 74 128-205 2-88 (270)
424 KOG0725 Reductases with broad 62.3 61 0.0013 26.2 8.0 82 125-207 7-102 (270)
425 cd01492 Aos1_SUMO Ubiquitin ac 61.9 48 0.001 25.4 7.0 76 125-202 20-118 (197)
426 COG1063 Tdh Threonine dehydrog 61.8 16 0.00035 30.7 4.7 44 125-168 168-213 (350)
427 KOG1209 1-Acyl dihydroxyaceton 61.5 52 0.0011 26.1 6.9 71 125-204 6-91 (289)
428 TIGR02415 23BDH acetoin reduct 60.8 47 0.001 25.9 7.1 73 128-204 2-87 (254)
429 PRK05597 molybdopterin biosynt 60.6 27 0.00057 29.6 5.8 75 125-201 27-125 (355)
430 PRK09242 tropinone reductase; 60.0 36 0.00079 26.7 6.3 78 125-204 8-98 (257)
431 PRK05599 hypothetical protein; 59.7 45 0.00098 26.1 6.8 73 128-204 2-87 (246)
432 COG4627 Uncharacterized protei 59.4 1.7 3.7E-05 32.2 -1.3 60 128-211 5-64 (185)
433 PLN02989 cinnamyl-alcohol dehy 59.1 27 0.00059 28.6 5.6 78 125-204 4-87 (325)
434 PRK08340 glucose-1-dehydrogena 59.0 40 0.00086 26.5 6.4 72 128-204 2-86 (259)
435 PRK06935 2-deoxy-D-gluconate 3 58.6 45 0.00097 26.2 6.7 75 125-204 14-101 (258)
436 cd00757 ThiF_MoeB_HesA_family 58.5 16 0.00034 28.7 3.9 76 125-201 20-118 (228)
437 KOG2798 Putative trehalase [Ca 58.5 15 0.00034 30.5 3.8 38 126-164 151-188 (369)
438 PLN03209 translocon at the inn 57.8 42 0.00091 30.5 6.8 79 125-204 79-169 (576)
439 PRK09548 PTS system ascorbate- 57.7 38 0.00083 30.8 6.5 60 125-204 505-564 (602)
440 PRK12481 2-deoxy-D-gluconate 3 57.7 49 0.0011 26.0 6.7 75 125-205 7-94 (251)
441 PLN02780 ketoreductase/ oxidor 57.6 44 0.00095 27.7 6.6 60 125-186 52-114 (320)
442 PRK06198 short chain dehydroge 57.6 55 0.0012 25.6 7.0 76 125-204 5-94 (260)
443 KOG2360 Proliferation-associat 57.3 22 0.00048 30.4 4.6 64 124-189 212-277 (413)
444 TIGR00027 mthyl_TIGR00027 meth 57.2 1E+02 0.0022 24.8 11.2 84 126-210 82-174 (260)
445 PLN02240 UDP-glucose 4-epimera 57.2 42 0.0009 27.8 6.5 76 125-204 4-91 (352)
446 PRK15181 Vi polysaccharide bio 57.0 48 0.001 27.6 6.8 79 125-206 14-102 (348)
447 KOG2912 Predicted DNA methylas 57.0 32 0.00069 28.8 5.4 75 129-204 106-188 (419)
448 PF02662 FlpD: Methyl-viologen 57.0 39 0.00085 23.9 5.4 54 125-187 52-105 (124)
449 PRK08762 molybdopterin biosynt 57.0 26 0.00057 29.8 5.3 76 125-201 134-232 (376)
450 cd08232 idonate-5-DH L-idonate 56.8 19 0.00041 29.6 4.3 42 125-166 165-208 (339)
451 PRK08177 short chain dehydroge 56.5 33 0.00072 26.3 5.5 69 127-204 2-81 (225)
452 PRK06197 short chain dehydroge 56.5 70 0.0015 25.9 7.6 79 125-205 15-106 (306)
453 PRK07060 short chain dehydroge 56.4 50 0.0011 25.5 6.5 74 125-206 8-89 (245)
454 PRK07231 fabG 3-ketoacyl-(acyl 56.3 46 0.001 25.7 6.3 75 125-204 4-91 (251)
455 PRK08415 enoyl-(acyl carrier p 56.0 88 0.0019 25.1 8.0 77 125-205 4-94 (274)
456 PRK14106 murD UDP-N-acetylmura 56.0 56 0.0012 28.3 7.3 72 125-204 4-78 (450)
457 KOG1371 UDP-glucose 4-epimeras 55.8 40 0.00087 28.2 5.8 79 126-206 2-89 (343)
458 PLN02657 3,8-divinyl protochlo 55.4 24 0.00051 30.2 4.8 74 125-202 59-144 (390)
459 PRK07775 short chain dehydroge 54.9 72 0.0016 25.4 7.3 76 125-204 9-97 (274)
460 PRK08303 short chain dehydroge 54.9 51 0.0011 27.0 6.5 74 125-202 7-103 (305)
461 PLN02662 cinnamyl-alcohol dehy 54.7 32 0.0007 28.0 5.4 77 125-203 3-85 (322)
462 PRK07831 short chain dehydroge 54.7 83 0.0018 24.7 7.6 78 125-205 16-108 (262)
463 PRK07791 short chain dehydroge 54.3 56 0.0012 26.3 6.7 77 125-205 5-103 (286)
464 KOG2782 Putative SAM dependent 54.3 11 0.00024 29.7 2.3 80 124-205 42-129 (303)
465 TIGR01500 sepiapter_red sepiap 54.3 72 0.0016 25.0 7.2 60 128-188 2-67 (256)
466 PF00107 ADH_zinc_N: Zinc-bind 54.0 9.7 0.00021 26.5 1.9 33 135-167 1-33 (130)
467 COG3640 CooC CO dehydrogenase 53.8 85 0.0018 25.2 7.1 73 111-185 118-195 (255)
468 PLN02253 xanthoxin dehydrogena 53.4 54 0.0012 26.1 6.4 75 125-204 17-104 (280)
469 PRK12548 shikimate 5-dehydroge 53.0 79 0.0017 25.8 7.3 77 125-206 125-211 (289)
470 PRK07067 sorbitol dehydrogenas 52.9 63 0.0014 25.3 6.6 73 125-204 5-90 (257)
471 cd01487 E1_ThiF_like E1_ThiF_l 52.9 41 0.00089 25.2 5.2 31 128-158 1-33 (174)
472 PRK09186 flagellin modificatio 52.8 64 0.0014 25.1 6.7 76 125-202 3-91 (256)
473 PRK09135 pteridine reductase; 52.7 90 0.0019 24.0 7.5 77 125-204 5-95 (249)
474 PRK05875 short chain dehydroge 52.7 64 0.0014 25.5 6.7 77 125-203 6-95 (276)
475 PF11312 DUF3115: Protein of u 52.6 83 0.0018 26.2 7.2 79 127-205 88-211 (315)
476 PRK06940 short chain dehydroge 52.6 78 0.0017 25.3 7.2 74 127-205 3-87 (275)
477 COG3320 Putative dehydrogenase 52.6 52 0.0011 28.1 6.1 83 133-215 6-108 (382)
478 PRK07024 short chain dehydroge 52.5 48 0.001 26.0 5.9 74 127-205 3-89 (257)
479 PRK07533 enoyl-(acyl carrier p 52.5 72 0.0016 25.2 6.9 77 125-205 9-99 (258)
480 PRK07792 fabG 3-ketoacyl-(acyl 52.3 73 0.0016 26.0 7.1 76 125-204 11-99 (306)
481 PRK07806 short chain dehydroge 51.8 60 0.0013 25.1 6.3 76 125-204 5-94 (248)
482 KOG0022 Alcohol dehydrogenase, 51.8 31 0.00067 28.9 4.6 43 125-167 192-236 (375)
483 PRK03369 murD UDP-N-acetylmura 51.8 41 0.00089 29.7 5.8 71 125-206 11-82 (488)
484 cd08255 2-desacetyl-2-hydroxye 51.7 26 0.00056 27.8 4.3 44 124-167 96-141 (277)
485 PRK08265 short chain dehydroge 51.1 74 0.0016 25.1 6.8 73 125-204 5-90 (261)
486 cd08245 CAD Cinnamyl alcohol d 50.9 28 0.00062 28.4 4.5 43 124-166 161-204 (330)
487 PLN02740 Alcohol dehydrogenase 50.9 26 0.00056 29.7 4.3 43 124-166 197-241 (381)
488 cd00755 YgdL_like Family of ac 50.9 85 0.0018 24.8 6.9 33 125-157 10-44 (231)
489 PRK06701 short chain dehydroge 50.8 71 0.0015 25.8 6.7 76 125-204 45-134 (290)
490 TIGR02822 adh_fam_2 zinc-bindi 50.7 27 0.00059 28.9 4.3 44 124-167 164-208 (329)
491 PRK06138 short chain dehydroge 50.6 67 0.0015 24.9 6.4 75 125-204 4-91 (252)
492 COG2933 Predicted SAM-dependen 50.4 58 0.0013 26.6 5.8 66 125-200 211-276 (358)
493 KOG2352 Predicted spermine/spe 50.2 14 0.00031 32.4 2.5 44 125-168 295-339 (482)
494 PLN02427 UDP-apiose/xylose syn 50.2 31 0.00066 29.2 4.7 77 125-204 13-96 (386)
495 PRK08628 short chain dehydroge 50.0 79 0.0017 24.7 6.8 75 125-204 6-93 (258)
496 PRK12823 benD 1,6-dihydroxycyc 49.8 82 0.0018 24.6 6.9 74 125-203 7-93 (260)
497 TIGR02354 thiF_fam2 thiamine b 49.6 47 0.001 25.5 5.2 33 125-157 20-54 (200)
498 PRK05690 molybdopterin biosynt 49.5 80 0.0017 25.1 6.7 76 125-201 31-129 (245)
499 PRK08306 dipicolinate synthase 49.5 25 0.00054 28.9 3.8 41 125-165 151-192 (296)
500 PRK06200 2,3-dihydroxy-2,3-dih 49.4 63 0.0014 25.4 6.2 74 125-205 5-91 (263)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.86 E-value=5.2e-21 Score=149.91 Aligned_cols=104 Identities=28% Similarity=0.364 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
..|.+.++..+. .++.+|||||||||..+..+++ .+..+|+|+|+|+.|++.++++..+.++. +++|+++|++.||
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LP 114 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCC
Confidence 356666666665 5789999999999999999987 33568999999999999999999988874 5999999999999
Q ss_pred CCCCceeEEEecccccccCChhhhhcCC
Q 027913 190 VSDASVDAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e~ 217 (217)
|++++||+|++.++|++++|++.+|+|+
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~~aL~E~ 142 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDIDKALKEM 142 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHHHHHHHH
Confidence 9999999999999999999999999984
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.82 E-value=3.5e-20 Score=146.26 Aligned_cols=102 Identities=28% Similarity=0.410 Sum_probs=74.5
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~ 190 (217)
|++.+++... .++.+|||+|||||..+..+++. +..+|+|+|+|++|++.|+++....+. .+++++++|++++|+
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPF 112 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcC
Confidence 4444555443 57889999999999999988863 456999999999999999999998887 599999999999999
Q ss_pred CCCceeEEEecccccccCChhhhhcCC
Q 027913 191 SDASVDAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~d~~~~L~e~ 217 (217)
++++||+|++.+.+++++|+.++|+|+
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~ 139 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREM 139 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence 999999999999999999999999873
No 3
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.81 E-value=3.2e-19 Score=144.53 Aligned_cols=150 Identities=22% Similarity=0.392 Sum_probs=106.7
Q ss_pred cceecCCcchhhhhcc--cccCCCccCCCCCCCCCCCChhhhhhhcCCCChhhhHHHHHHHhhhhhHhHHHHHHHHHHHH
Q 027913 41 KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQL 118 (217)
Q Consensus 41 ~~c~c~~~~~f~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (217)
...+|.++|+|+.+++ ++++|.+ .+.++.+++...|..... .+++ . ..|..........+
T Consensus 17 ~~~~C~~~h~fd~a~~Gy~~ll~~~----~~~~~~~~d~~~~~~ar~----~fl~--------~--g~y~~l~~~i~~~l 78 (272)
T PRK11088 17 NSWICPQNHQFDCAKEGYVNLLPVQ----HKRSKDPGDNKEMMQARR----AFLD--------A--GHYQPLRDAVANLL 78 (272)
T ss_pred CEEEcCCCCCCccccCceEEecccc----ccCCCCCCcCHHHHHHHH----HHHH--------C--CChHHHHHHHHHHH
Confidence 4588999999999997 7888877 666666777777776532 2211 1 11333222222222
Q ss_pred HHHhcCCCCeEEEECCcCCcchHhhhhC-C---CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-T---DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
.+.+.....+|||||||+|.++..+++. + +.+++|+|+|+.|++.|+++. .++.|.++|+..+|+++++
T Consensus 79 ~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 79 AERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQS 151 (272)
T ss_pred HHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCc
Confidence 2233335678999999999999888753 1 247999999999999998763 4688999999999999999
Q ss_pred eeEEEecccccccCChhhhhc
Q 027913 195 VDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 195 fD~V~~~~~l~~~~d~~~~L~ 215 (217)
||+|++.+....+.+..++|+
T Consensus 152 fD~I~~~~~~~~~~e~~rvLk 172 (272)
T PRK11088 152 LDAIIRIYAPCKAEELARVVK 172 (272)
T ss_pred eeEEEEecCCCCHHHHHhhcc
Confidence 999999887665555555554
No 4
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.80 E-value=3.7e-19 Score=133.73 Aligned_cols=134 Identities=32% Similarity=0.411 Sum_probs=106.9
Q ss_pred hhhhcCCCChhhhHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHH
Q 027913 80 MLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRK 159 (217)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~ 159 (217)
..+...+....|....+...++..+..|..++..-+..++-+. ....|||||||||.+..++--.++.+||++|+++.
T Consensus 33 n~~~~~~~~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk~--~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~ 110 (252)
T KOG4300|consen 33 NYESRQKSDLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGKS--GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEK 110 (252)
T ss_pred HHHhcCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHhccc--CccceEEecccCCCCcccccCCCCceEEEeCCcHH
Confidence 3445556666777877777777777777655444433333222 44568999999999999886567889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCeE-EEeccccccc-CCCCceeEEEecccccccCChhhhhcCC
Q 027913 160 MEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 160 ~l~~a~~~~~~~~~~~~~v~-~~~~d~~~l~-~~~~sfD~V~~~~~l~~~~d~~~~L~e~ 217 (217)
|-+++.+.+.+... .++. |++++.+++| ++++++|+|++.++|+.+.|+.+.|+|+
T Consensus 111 mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~ 168 (252)
T KOG4300|consen 111 MEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEV 168 (252)
T ss_pred HHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHH
Confidence 99999999987743 5777 9999999998 8999999999999999999999999874
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.78 E-value=4.5e-18 Score=141.74 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhc------CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027913 111 VAGYKSQLFDNLR------GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184 (217)
Q Consensus 111 ~~~~~~~i~~~~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d 184 (217)
.......+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.++++....++. .+++|+++|
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D 176 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcC
Confidence 4445555555543 356899999999999999998766789999999999999999999888775 579999999
Q ss_pred cccccCCCCceeEEEecccccccCChhhhhcC
Q 027913 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 185 ~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
+..+|+++++||+|++..+++|++|+..+|+|
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e 208 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPDKRKFVQE 208 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCCHHHHHHH
Confidence 99999999999999999999999999888876
No 6
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=3.3e-19 Score=142.23 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=110.1
Q ss_pred ChhhhhhhcCCCChhhhHH---HHHHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeE
Q 027913 76 DSMAMLNRLHPPRPDWYEE---FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQV 151 (217)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v 151 (217)
....+.+-.+..+..|+++ |.+.+|......++++.....+.+++++. .+|++|||||||+|.++.++++..+.+|
T Consensus 19 ~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V 98 (283)
T COG2230 19 NIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTV 98 (283)
T ss_pred hhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEE
Confidence 3444555555555555554 55566666555677777888888899888 8999999999999999999998889999
Q ss_pred EEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccccCC--hhhhh
Q 027913 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTL 214 (217)
Q Consensus 152 ~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d--~~~~L 214 (217)
+|+++|+++.+.+++++...|+. .+++++..|.++++ +.||.|++..+|+|+.. ....+
T Consensus 99 ~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff 159 (283)
T COG2230 99 VGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFF 159 (283)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCC-cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHH
Confidence 99999999999999999999996 69999999999885 44999999999999975 44443
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=3.1e-18 Score=140.93 Aligned_cols=90 Identities=23% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||||||+|.++..++ ..+.+|+|||++++|++.|+++....+.. .+++++++|++++++++++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 56799999999999999887 45779999999999999999887654432 47999999999998888899999999999
Q ss_pred cccCChhhhhcC
Q 027913 205 CSVKDVDMTLQA 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
+|++|+..+|++
T Consensus 209 eHv~d~~~~L~~ 220 (322)
T PLN02396 209 EHVANPAEFCKS 220 (322)
T ss_pred HhcCCHHHHHHH
Confidence 999999998875
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.75 E-value=1e-17 Score=131.96 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=73.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|+++. .++++|++.+|+++++||+|++.+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~----------~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD----------DKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc----------ceEEechhhCCCCCCCEEEEEecChh
Confidence 57899999999999999988654579999999999999998641 36789999999999999999999999
Q ss_pred cccCChhhhhcCC
Q 027913 205 CSVKDVDMTLQAP 217 (217)
Q Consensus 205 ~~~~d~~~~L~e~ 217 (217)
+|++|++++|+|+
T Consensus 121 ~~~~d~~~~l~e~ 133 (226)
T PRK05785 121 HASDNIEKVIAEF 133 (226)
T ss_pred hccCCHHHHHHHH
Confidence 9999999998873
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=2.5e-17 Score=132.58 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=79.4
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccccCCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~~~~~sfD~V~ 199 (217)
.++.+|||||||+|.++..+++. +..+|+|+|+|++|++.|+++... .... .+++++++|++.+|+++++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccC-CCeEEEEcccccCCCCCCCEeEEE
Confidence 46789999999999998888763 346899999999999999987532 1111 579999999999999999999999
Q ss_pred ecccccccCChhhhhcCC
Q 027913 200 GTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 200 ~~~~l~~~~d~~~~L~e~ 217 (217)
+.+++||++|+..+|+|+
T Consensus 151 ~~~~l~~~~d~~~~l~ei 168 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEM 168 (261)
T ss_pred EecccccCCCHHHHHHHH
Confidence 999999999999998874
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=1.1e-18 Score=134.86 Aligned_cols=88 Identities=28% Similarity=0.349 Sum_probs=80.3
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++++|||||||.|.++..+| ..|..|+|+|+++.+++.|+....+.++ ++++.+..++++....++||+|+|..|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 89999999999999999998 5569999999999999999999988886 5889999999997666899999999999
Q ss_pred cccCChhhhhcC
Q 027913 205 CSVKDVDMTLQA 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
+|++||+.+++.
T Consensus 135 EHv~dp~~~~~~ 146 (243)
T COG2227 135 EHVPDPESFLRA 146 (243)
T ss_pred HccCCHHHHHHH
Confidence 999999987753
No 11
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.73 E-value=1.9e-18 Score=139.39 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC
Q 027913 95 FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173 (217)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 173 (217)
|.+.+|......+++........+++++. .++.+|||||||+|.++.++++..+.+|+|+++|+++.+.+++++.+.|+
T Consensus 31 YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 31 YSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred CCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC
Confidence 33445555666677777778888888887 78999999999999999999987688999999999999999999999998
Q ss_pred CCCCeEEEecccccccCCCCceeEEEecccccccC--Chhhhhc
Q 027913 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK--DVDMTLQ 215 (217)
Q Consensus 174 ~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~--d~~~~L~ 215 (217)
. +++++...|..+++. +||.|++..+++|+. +....++
T Consensus 111 ~-~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~ 150 (273)
T PF02353_consen 111 E-DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFR 150 (273)
T ss_dssp S-STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred C-CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHH
Confidence 7 789999999988753 899999999999995 4445443
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1.1e-16 Score=126.65 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=86.8
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
.+...++..+. .++.+|||+|||+|.++..+++. ++.+++|+|++++|++.+++++...++ .+++++.+|++.++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCC
Confidence 34445555555 46789999999999999988863 456899999999999999999877766 58999999999998
Q ss_pred CCCCceeEEEecccccccCChhhhhcC
Q 027913 190 VSDASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
+++++||+|++.+++++++++.++|++
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~ 136 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLRE 136 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHH
Confidence 888999999999999999999888765
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.71 E-value=5.9e-17 Score=130.13 Aligned_cols=99 Identities=28% Similarity=0.346 Sum_probs=85.0
Q ss_pred HHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCc
Q 027913 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDAS 194 (217)
Q Consensus 116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~s 194 (217)
..+++.+..++.+|||||||+|.++..+++ .+.+|+|+|+|++|++.|+++....++. .+++++++|+.+++ +.+++
T Consensus 35 ~~~l~~l~~~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 35 DRLLAELPPRPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHhcCCCCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhhhcCCC
Confidence 345555555678999999999999999985 4679999999999999999999888765 58999999998874 56789
Q ss_pred eeEEEecccccccCChhhhhcC
Q 027913 195 VDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 195 fD~V~~~~~l~~~~d~~~~L~e 216 (217)
||+|++..+++|++++..+|++
T Consensus 113 fD~V~~~~vl~~~~~~~~~l~~ 134 (255)
T PRK11036 113 VDLILFHAVLEWVADPKSVLQT 134 (255)
T ss_pred CCEEEehhHHHhhCCHHHHHHH
Confidence 9999999999999999888765
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=5.9e-17 Score=120.18 Aligned_cols=89 Identities=31% Similarity=0.509 Sum_probs=79.6
Q ss_pred CCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~ 200 (217)
.+.+|||+|||+|.++..+++ .++.+++|+|+|++|++.|+++++..++ .+++|+++|+.+++ ++ +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--DNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--TTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--cccceEEeehhccccccC-CCeeEEEE
Confidence 578999999999999999984 4578999999999999999999999888 48999999999987 65 89999999
Q ss_pred cccccccCChhhhhcC
Q 027913 201 TLVLCSVKDVDMTLQA 216 (217)
Q Consensus 201 ~~~l~~~~d~~~~L~e 216 (217)
..+++|++++..+|++
T Consensus 80 ~~~l~~~~~~~~~l~~ 95 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKN 95 (152)
T ss_dssp ESTGGGTSHHHHHHHH
T ss_pred cCchhhccCHHHHHHH
Confidence 9999999999887764
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=3.1e-17 Score=111.39 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=71.5
Q ss_pred EEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccccCC
Q 027913 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 130 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d 209 (217)
||+|||+|..+..+++..+.+++++|+++++++.++++.... ++.+..+|++.+|+++++||+|++..+++|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeeccC
Confidence 899999999999999776889999999999999999987543 456999999999999999999999999999999
Q ss_pred hhhhhcCC
Q 027913 210 VDMTLQAP 217 (217)
Q Consensus 210 ~~~~L~e~ 217 (217)
+..+|+|+
T Consensus 76 ~~~~l~e~ 83 (95)
T PF08241_consen 76 PEAALREI 83 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888763
No 16
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.69 E-value=2.4e-16 Score=122.25 Aligned_cols=104 Identities=23% Similarity=0.303 Sum_probs=89.8
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-C------CCeEEEecCCHHHHHHHHHHHHHcCCCCC-CeEEEecc
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-T------DVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAV 184 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~v~~~~~d 184 (217)
|...++..+. .++.++||++||||..++.+.+. . ..+|+++|+|++|+..++++.++.++... .+.|+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 4444556665 57789999999999999888862 1 26899999999999999999988887633 39999999
Q ss_pred cccccCCCCceeEEEecccccccCChhhhhcCC
Q 027913 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 185 ~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e~ 217 (217)
++++||++.+||..++.+.+.++++++++|+||
T Consensus 168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~EA 200 (296)
T KOG1540|consen 168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALREA 200 (296)
T ss_pred cccCCCCCCcceeEEEecceecCCCHHHHHHHH
Confidence 999999999999999999999999999999986
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=4.7e-16 Score=124.57 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=79.2
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 192 (217)
....+++.+. .++.+|||||||+|.++..+++ .+.+++++|+|+.|++.++++. ....++++|++.+|+++
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~-------~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD-------AADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC-------CCCCEEEcCcccCcCCC
Confidence 3344455554 3568999999999999888874 5689999999999999999874 23468999999999988
Q ss_pred CceeEEEecccccccCChhhhhcC
Q 027913 193 ASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++||+|+++.++++++|+..+|++
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~ 125 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRE 125 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHH
Confidence 999999999999999999988875
No 18
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=4.6e-16 Score=120.70 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=67.2
Q ss_pred CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
++.+|||||||+|.++..+++. ++.+++|+|+|++|++.|+++. .++.+.++|+.. |+++++||+|++..+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 6778999999999999998864 5679999999999999999864 356788999888 888899999999999
Q ss_pred ccccC
Q 027913 204 LCSVK 208 (217)
Q Consensus 204 l~~~~ 208 (217)
|+|++
T Consensus 115 L~hl~ 119 (204)
T TIGR03587 115 LIHIN 119 (204)
T ss_pred hhhCC
Confidence 99995
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=1.1e-15 Score=122.20 Aligned_cols=117 Identities=14% Similarity=0.222 Sum_probs=89.2
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913 95 FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~ 171 (217)
.|+.......+.|+. +......++.....++.+|||||||+|..+..+++ .++.+++|+|+|+.|++.|++++...
T Consensus 27 ~yd~~~~~~~p~y~~-~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 27 VFPDMIQRSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred hhhhHHHhcCCChHH-HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 444444444556665 44444445555445778999999999999888775 36789999999999999999999877
Q ss_pred CCCCCCeEEEecccccccCCCCceeEEEecccccccCCh--hhhhc
Q 027913 172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQ 215 (217)
Q Consensus 172 ~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~--~~~L~ 215 (217)
+.. .+++++++|+..++++ .+|+|++++++||+++. ..+|+
T Consensus 106 ~~~-~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~ 148 (247)
T PRK15451 106 KAP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLD 148 (247)
T ss_pred CCC-CCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHH
Confidence 664 5899999999988764 49999999999999753 34444
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=8.7e-16 Score=123.36 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=77.2
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 192 (217)
...+++.+. .++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|++. +++++++|++.++ ++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CC
Confidence 344566665 57789999999999999998863 467999999999999999763 4679999998875 56
Q ss_pred CceeEEEecccccccCChhhhhcC
Q 027913 193 ASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++||+|++..++||++++..+|++
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~ 111 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVR 111 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHH
Confidence 799999999999999999888765
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=9.2e-16 Score=107.70 Aligned_cols=81 Identities=26% Similarity=0.284 Sum_probs=68.3
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~~~~~sfD~V~~~~ 202 (217)
|+.+|||||||+|.++..+++ .++.+++|+|+|++|++.+++++.+.+.. .+++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCccc-CCCCCEEEECC
Confidence 578999999999999999997 58889999999999999999999666665 7999999999 33333 35699999999
Q ss_pred -ccccc
Q 027913 203 -VLCSV 207 (217)
Q Consensus 203 -~l~~~ 207 (217)
+++++
T Consensus 79 ~~~~~~ 84 (112)
T PF12847_consen 79 FTLHFL 84 (112)
T ss_dssp GSGGGC
T ss_pred Cccccc
Confidence 55544
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=3.1e-15 Score=120.27 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=79.9
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~ 190 (217)
.....++..+. .++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.++++. .++.++.+|+..+.
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~- 89 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ- 89 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-
Confidence 34555666655 5678999999999999999886 35679999999999999999874 46789999998775
Q ss_pred CCCceeEEEecccccccCChhhhhcC
Q 027913 191 SDASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++++||+|+++.+++|++|+..+|++
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~ 115 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPR 115 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHH
Confidence 45699999999999999999888765
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.61 E-value=3e-15 Score=115.67 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=74.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.++++....++ .++++.+.|+..++++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLERIKAAENL--DNLHTAVVDLNNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCC--CcceEEecChhhCCcC-CCcCEEEEecch
Confidence 678999999999999999985 467999999999999999999988887 4789999999888774 679999999999
Q ss_pred cccCC--hhhhhc
Q 027913 205 CSVKD--VDMTLQ 215 (217)
Q Consensus 205 ~~~~d--~~~~L~ 215 (217)
||++. ...+++
T Consensus 106 ~~~~~~~~~~~l~ 118 (197)
T PRK11207 106 MFLEAKTIPGLIA 118 (197)
T ss_pred hhCCHHHHHHHHH
Confidence 98863 344443
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=6.9e-15 Score=117.02 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=78.2
Q ss_pred HHHHHHhcCCCCeEEEECCcCCcchHhhhhC---CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 192 (217)
..+.+....++.+|||||||+|.++..+++. ++.+++|+|+|++|++.|++++...+.. .+++++++|+..++++
T Consensus 44 ~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~- 121 (239)
T TIGR00740 44 GMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEIK- 121 (239)
T ss_pred HHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCCC-
Confidence 3344444357789999999999999888763 5789999999999999999998776543 4789999999998865
Q ss_pred CceeEEEecccccccCC--hhhhhcC
Q 027913 193 ASVDAVVGTLVLCSVKD--VDMTLQA 216 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d--~~~~L~e 216 (217)
.+|+|++.+++||+++ +..+|++
T Consensus 122 -~~d~v~~~~~l~~~~~~~~~~~l~~ 146 (239)
T TIGR00740 122 -NASMVILNFTLQFLPPEDRIALLTK 146 (239)
T ss_pred -CCCEEeeecchhhCCHHHHHHHHHH
Confidence 4899999999999964 3445543
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=4e-15 Score=119.94 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=82.2
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
...++..+. .++.+|||||||+|..+..+++..+.+|+|+|+|+.|++.++++... . .++.++.+|+...|++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~---~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-K---NKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-C---CceEEEECCcccCCCCCC
Confidence 344566665 57889999999999999988765577999999999999999988643 1 579999999999999889
Q ss_pred ceeEEEecccccccC--ChhhhhcC
Q 027913 194 SVDAVVGTLVLCSVK--DVDMTLQA 216 (217)
Q Consensus 194 sfD~V~~~~~l~~~~--d~~~~L~e 216 (217)
+||+|++..+++|++ ++..+|++
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~ 141 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEK 141 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHH
Confidence 999999999999986 67777654
No 26
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=6.6e-15 Score=121.75 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.++.+|++.+|+ +++||+|++..+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 367899999999999999998655557999999999997655443332222 479999999999998 789999999999
Q ss_pred ccccCChhhhhcC
Q 027913 204 LCSVKDVDMTLQA 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
++|+.++..+|++
T Consensus 199 l~H~~dp~~~L~~ 211 (322)
T PRK15068 199 LYHRRSPLDHLKQ 211 (322)
T ss_pred hhccCCHHHHHHH
Confidence 9999999988875
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.59 E-value=6e-15 Score=128.44 Aligned_cols=98 Identities=24% Similarity=0.348 Sum_probs=83.2
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.+++.+. .++.+|||||||+|..+..+++..+.+++|+|+|+.|++.|+++..... .++.|+++|+...++++++|
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCCCCCCE
Confidence 3444443 4678999999999999988887667899999999999999998865333 47899999999988888899
Q ss_pred eEEEecccccccCChhhhhcCC
Q 027913 196 DAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 196 D~V~~~~~l~~~~d~~~~L~e~ 217 (217)
|+|++..+++|++++..+|+++
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~ 355 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSF 355 (475)
T ss_pred EEEEECCcccccCCHHHHHHHH
Confidence 9999999999999999988763
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.58 E-value=2.8e-15 Score=103.52 Aligned_cols=79 Identities=29% Similarity=0.406 Sum_probs=65.6
Q ss_pred EEEECCcCCcchHhhhhCC----CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc-c
Q 027913 129 VLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-V 203 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~ 203 (217)
|||+|||+|..+..+.+.. ..+++|+|+|++|++.++++....+. +++|+++|+.++++.+++||+|++.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999988642 37999999999999999999988764 78999999999998888999999955 5
Q ss_pred ccccCCh
Q 027913 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
++|+++.
T Consensus 78 ~~~~~~~ 84 (101)
T PF13649_consen 78 LHHLSPE 84 (101)
T ss_dssp GGGSSHH
T ss_pred cCCCCHH
Confidence 9998753
No 29
>PRK06202 hypothetical protein; Provisional
Probab=99.57 E-value=8e-15 Score=116.14 Aligned_cols=88 Identities=22% Similarity=0.341 Sum_probs=71.0
Q ss_pred CCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V 198 (217)
.++.+|||||||+|.++..+++ .++.+++|+|+|++|++.|+++... .++.+.+.+...++.++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccEE
Confidence 3677999999999998887764 2346899999999999999987543 24567777777777777899999
Q ss_pred EecccccccCChh--hhhcC
Q 027913 199 VGTLVLCSVKDVD--MTLQA 216 (217)
Q Consensus 199 ~~~~~l~~~~d~~--~~L~e 216 (217)
+++++|||+++++ .+|+|
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~ 153 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLAD 153 (232)
T ss_pred EECCeeecCChHHHHHHHHH
Confidence 9999999999853 45654
No 30
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.56 E-value=3.4e-15 Score=116.54 Aligned_cols=86 Identities=27% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCC----CeEEEecccccccCCCCceeEEEec
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
+++|||+|||+|.++..|+ ..|.+|+|||+++.|++.|++.....-.... ++++.+.|++.+. +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 4789999999999999998 6679999999999999999999433222112 3677888888774 459999999
Q ss_pred ccccccCChhhhhc
Q 027913 202 LVLCSVKDVDMTLQ 215 (217)
Q Consensus 202 ~~l~~~~d~~~~L~ 215 (217)
.+++|+.||..++.
T Consensus 166 evleHV~dp~~~l~ 179 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLN 179 (282)
T ss_pred HHHHHHhCHHHHHH
Confidence 99999999998764
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.56 E-value=2.2e-14 Score=116.29 Aligned_cols=91 Identities=31% Similarity=0.393 Sum_probs=79.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.++.+|||||||+|..+..+++. ...+++|+|+++.|++.|+++....++ .+++++.+|++.+++++++||+|++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEEEc
Confidence 37889999999999877766653 345799999999999999999888777 58999999999999888899999999
Q ss_pred ccccccCChhhhhcC
Q 027913 202 LVLCSVKDVDMTLQA 216 (217)
Q Consensus 202 ~~l~~~~d~~~~L~e 216 (217)
.+++++++...+|++
T Consensus 154 ~v~~~~~d~~~~l~~ 168 (272)
T PRK11873 154 CVINLSPDKERVFKE 168 (272)
T ss_pred CcccCCCCHHHHHHH
Confidence 999999998888765
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=6.8e-15 Score=110.79 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEec
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~ 201 (217)
.++.+|||+|||.|.++.++.+..+.+..|+|++++.+..+.++ | +.++++|++.- + |++++||.|+.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 48899999999999999999888889999999999998888864 4 46999999763 3 899999999999
Q ss_pred ccccccCChhhhhcCC
Q 027913 202 LVLCSVKDVDMTLQAP 217 (217)
Q Consensus 202 ~~l~~~~d~~~~L~e~ 217 (217)
.+|.++.+|+.+|+|+
T Consensus 83 qtLQ~~~~P~~vL~Em 98 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEM 98 (193)
T ss_pred hHHHhHhHHHHHHHHH
Confidence 9999999999999874
No 33
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.54 E-value=1.6e-14 Score=111.44 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c-cCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l-~~~~~sfD~V~~~~ 202 (217)
++.+|||||||+|.++..+++..+..++|+|+++++++.++++ +++++++|+.. + ++++++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 6779999999999999888766667899999999999988642 45788899876 4 36778999999999
Q ss_pred cccccCChhhhhcC
Q 027913 203 VLCSVKDVDMTLQA 216 (217)
Q Consensus 203 ~l~~~~d~~~~L~e 216 (217)
+++|++++..+|+|
T Consensus 84 ~l~~~~d~~~~l~e 97 (194)
T TIGR02081 84 TLQATRNPEEILDE 97 (194)
T ss_pred HhHcCcCHHHHHHH
Confidence 99999999998876
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.54 E-value=3.3e-14 Score=116.65 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=75.3
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD 196 (217)
++..+. .++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.+...+++.+|.. .+||
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCCCC-CCcC
Confidence 344433 478899999999999988887654457999999999997754432222211 4788999999998854 5899
Q ss_pred EEEecccccccCChhhhhcC
Q 027913 197 AVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 197 ~V~~~~~l~~~~d~~~~L~e 216 (217)
+|++..+++|++++..+|++
T Consensus 191 ~V~s~gvL~H~~dp~~~L~e 210 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQ 210 (314)
T ss_pred EEEEcchhhccCCHHHHHHH
Confidence 99999999999999988875
No 35
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.54 E-value=2.6e-14 Score=118.18 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=77.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.++.+|||||||+|.++..+++. ++.+++++|+|++|++.|+++... .+++++.+|++.+++++++||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 36789999999999988888753 457899999999999999987532 467899999999999889999999999
Q ss_pred cccccCChhhhhcCC
Q 027913 203 VLCSVKDVDMTLQAP 217 (217)
Q Consensus 203 ~l~~~~d~~~~L~e~ 217 (217)
+++++++++.+|+|+
T Consensus 187 ~L~~~~d~~~~L~e~ 201 (340)
T PLN02490 187 SIEYWPDPQRGIKEA 201 (340)
T ss_pred hhhhCCCHHHHHHHH
Confidence 999999999888763
No 36
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=8.4e-14 Score=109.36 Aligned_cols=80 Identities=28% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||||||+|.++..+++ .+.+++|+|+|++|+..|++++...+.. .++.|.++|+..++ ++||+|++..++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhCC---CCcCEEEEhhHH
Confidence 678999999999999999985 4668999999999999999998776653 47899999998875 789999999999
Q ss_pred cccCC
Q 027913 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
+|++.
T Consensus 130 ~~~~~ 134 (219)
T TIGR02021 130 IHYPA 134 (219)
T ss_pred HhCCH
Confidence 99864
No 37
>PRK08317 hypothetical protein; Provisional
Probab=99.52 E-value=7.5e-14 Score=110.46 Aligned_cols=100 Identities=28% Similarity=0.487 Sum_probs=82.4
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~ 190 (217)
+...+++.+. .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.++++..... .++.++.+|+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC
Confidence 3344455544 57789999999999999988864 35689999999999999998833222 579999999999888
Q ss_pred CCCceeEEEecccccccCChhhhhcC
Q 027913 191 SDASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++++||+|++..+++|++++..++++
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~ 109 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAE 109 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHH
Confidence 88999999999999999999888765
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=4.5e-14 Score=108.98 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||+|||+|.++.++++ .+.+|+|+|+|+.|++.++++....++ ++.+.+.|+...+++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~I~~~~~~ 104 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALN-EDYDFIFSTVVF 104 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhcccc-CCCCEEEEeccc
Confidence 678999999999999999985 467999999999999999998887775 377888888776664 579999999999
Q ss_pred cccCC
Q 027913 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
++++.
T Consensus 105 ~~~~~ 109 (195)
T TIGR00477 105 MFLQA 109 (195)
T ss_pred ccCCH
Confidence 99853
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.52 E-value=8.2e-14 Score=110.34 Aligned_cols=86 Identities=27% Similarity=0.357 Sum_probs=75.0
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.+.+|||||||+|.++..+++ .+..+++++|+++.+++.++++.. .++.++.+|++..++++++||+|++..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 457999999999999988886 345679999999999999988753 3678999999999988899999999999
Q ss_pred ccccCChhhhhcC
Q 027913 204 LCSVKDVDMTLQA 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
++|+.++..+|++
T Consensus 108 l~~~~~~~~~l~~ 120 (240)
T TIGR02072 108 LQWCDDLSQALSE 120 (240)
T ss_pred hhhccCHHHHHHH
Confidence 9999999888764
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=3.8e-14 Score=111.62 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=77.0
Q ss_pred CeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 205 (217)
++|||||||+|.++..+++. ++.+++|+|+|+++++.+++++...++. .++.++..|+...+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 47999999999999988864 3578999999999999999999888876 6899999999777665 5899999999999
Q ss_pred ccCChhhhhcC
Q 027913 206 SVKDVDMTLQA 216 (217)
Q Consensus 206 ~~~d~~~~L~e 216 (217)
|++++..+|++
T Consensus 79 ~~~~~~~~l~~ 89 (224)
T smart00828 79 HIKDKMDLFSN 89 (224)
T ss_pred hCCCHHHHHHH
Confidence 99998887764
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=1.4e-15 Score=104.52 Aligned_cols=85 Identities=29% Similarity=0.327 Sum_probs=56.0
Q ss_pred EEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecccccc
Q 027913 130 LEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS 206 (217)
Q Consensus 130 LDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~~l~~ 206 (217)
||||||+|.++..+.+ .+..+++|+|+|+.|++.+++++.+... .+...+..+..+.. ...++||+|++..++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 7999999999999886 4677999999999999999999888764 34455555544432 12259999999999999
Q ss_pred cCChhhhhcC
Q 027913 207 VKDVDMTLQA 216 (217)
Q Consensus 207 ~~d~~~~L~e 216 (217)
++++..+|+.
T Consensus 79 l~~~~~~l~~ 88 (99)
T PF08242_consen 79 LEDIEAVLRN 88 (99)
T ss_dssp -S-HHHHHHH
T ss_pred hhhHHHHHHH
Confidence 9999888764
No 42
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.50 E-value=2.8e-13 Score=107.37 Aligned_cols=101 Identities=30% Similarity=0.374 Sum_probs=83.3
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~ 191 (217)
...++..+. .++.+|||||||+|.++..++... ..+++++|+++.+++.+++++...++. .++.++.+|+..++++
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCC
Confidence 334444443 357899999999999999888644 479999999999999999998665543 5789999999998877
Q ss_pred CCceeEEEecccccccCChhhhhcC
Q 027913 192 DASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
.++||+|++.+++++++++...|++
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~ 143 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALRE 143 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHH
Confidence 7899999999999999998887754
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.50 E-value=1.7e-13 Score=108.23 Aligned_cols=81 Identities=26% Similarity=0.221 Sum_probs=68.8
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++....+.. .++.+..+|+. ..+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLE---SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCch---hccCCcCEEEEcchh
Confidence 6789999999999999998854 567999999999999999998877654 47899999943 345789999999999
Q ss_pred cccCCh
Q 027913 205 CSVKDV 210 (217)
Q Consensus 205 ~~~~d~ 210 (217)
+|++++
T Consensus 138 ~~~~~~ 143 (230)
T PRK07580 138 IHYPQE 143 (230)
T ss_pred hcCCHH
Confidence 998754
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=1.9e-13 Score=104.07 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=67.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.++||+|||.|+.+.+|+ ..|..|+++|.|+..++.+++.+.+.++ .++..+.|++...++ +.||+|++..++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEEEEEEEe
Confidence 78899999999999999998 5688999999999999999999988886 599999999998875 689999999999
Q ss_pred cccCCh
Q 027913 205 CSVKDV 210 (217)
Q Consensus 205 ~~~~d~ 210 (217)
+|++..
T Consensus 105 ~fL~~~ 110 (192)
T PF03848_consen 105 MFLQRE 110 (192)
T ss_dssp GGS-GG
T ss_pred ccCCHH
Confidence 998643
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.50 E-value=2.2e-13 Score=104.12 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=66.9
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
++.+|||||||+|..+..++. .++.+|+++|+++.|++.|+++....++ .+++++.+|+.+++. +++||+|++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--KNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC--CCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 578999999999999888875 5678999999999999999999999887 469999999999876 67999999865
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.49 E-value=2.2e-14 Score=121.20 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027913 106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184 (217)
Q Consensus 106 ~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d 184 (217)
.+++........+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|+++.. ++ ++++...|
T Consensus 147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l---~v~~~~~D 221 (383)
T PRK11705 147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL---PVEIRLQD 221 (383)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC---eEEEEECc
Confidence 345555566666777776 6788999999999999999987667899999999999999999873 32 47888888
Q ss_pred cccccCCCCceeEEEecccccccCC--hhhhhc
Q 027913 185 GEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQ 215 (217)
Q Consensus 185 ~~~l~~~~~sfD~V~~~~~l~~~~d--~~~~L~ 215 (217)
...+ +++||.|++..+++|+.+ +..+++
T Consensus 222 ~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~ 251 (383)
T PRK11705 222 YRDL---NGQFDRIVSVGMFEHVGPKNYRTYFE 251 (383)
T ss_pred hhhc---CCCCCEEEEeCchhhCChHHHHHHHH
Confidence 8766 478999999999999854 345444
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.49 E-value=2.9e-14 Score=106.16 Aligned_cols=80 Identities=31% Similarity=0.392 Sum_probs=66.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.++.+|||||||.|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|+++.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 37889999999999999999744 5599999999999988 1334555555566667889999999999
Q ss_pred ccccCChhhhhcC
Q 027913 204 LCSVKDVDMTLQA 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
|+|++|+..+|++
T Consensus 88 l~~~~d~~~~l~~ 100 (161)
T PF13489_consen 88 LEHLPDPEEFLKE 100 (161)
T ss_dssp GGGSSHHHHHHHH
T ss_pred HhhcccHHHHHHH
Confidence 9999999988864
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=1.4e-13 Score=112.30 Aligned_cols=79 Identities=27% Similarity=0.296 Sum_probs=70.0
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||||||+|.++.++++ .+.+|+|+|+|+.+++.+++++...++ ++++...|+...++ +++||+|++..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl 194 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASI-QEEYDFILSTVVL 194 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccc-cCCccEEEEcchh
Confidence 567999999999999999985 467999999999999999999988775 68899999887765 5789999999999
Q ss_pred cccC
Q 027913 205 CSVK 208 (217)
Q Consensus 205 ~~~~ 208 (217)
+|++
T Consensus 195 ~~l~ 198 (287)
T PRK12335 195 MFLN 198 (287)
T ss_pred hhCC
Confidence 9986
No 49
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=104.76 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
..-...++.... ....+|.|+|||+|..+..+++ -++..++|+|-|++|++.|+++. .+++|..+|+..+.
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~ 88 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWK 88 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcC
Confidence 344445566655 5788999999999999999986 67889999999999999998875 68899999999984
Q ss_pred CCCCceeEEEecccccccCChhhhh
Q 027913 190 VSDASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 190 ~~~~sfD~V~~~~~l~~~~d~~~~L 214 (217)
++..+|+|+++.+|++++|-...|
T Consensus 89 -p~~~~dllfaNAvlqWlpdH~~ll 112 (257)
T COG4106 89 -PEQPTDLLFANAVLQWLPDHPELL 112 (257)
T ss_pred -CCCccchhhhhhhhhhccccHHHH
Confidence 567899999999999999866554
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.46 E-value=6.1e-13 Score=101.34 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
++.+|||||||+|.++..++. .+..+|+|+|++++|++.++++.++.++ .+++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--~~i~~i~~d~~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--NNVEIVNGRAEDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--CCeEEEecchhhcc-ccCCccEEEehh-
Confidence 588999999999999888775 4457899999999999999999988887 47999999999875 357899999876
Q ss_pred ccccCCh
Q 027913 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
++++++.
T Consensus 118 ~~~~~~~ 124 (181)
T TIGR00138 118 LASLNVL 124 (181)
T ss_pred hhCHHHH
Confidence 5555443
No 51
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=5.5e-13 Score=109.61 Aligned_cols=82 Identities=24% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC---CCCCeEEEecccccccCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.+++++...+. ...++.|.+.|++.+ +++||+|++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 578999999999999999985 467999999999999999999876521 114678999998765 4789999999
Q ss_pred ccccccCCh
Q 027913 202 LVLCSVKDV 210 (217)
Q Consensus 202 ~~l~~~~d~ 210 (217)
.+++|+++.
T Consensus 220 ~vL~H~p~~ 228 (315)
T PLN02585 220 DVLIHYPQD 228 (315)
T ss_pred CEEEecCHH
Confidence 999998764
No 52
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.45 E-value=1.2e-12 Score=102.71 Aligned_cols=99 Identities=32% Similarity=0.422 Sum_probs=81.3
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~ 190 (217)
+...+++.+. .++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. .. .++.++.+|+.++++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCC
Confidence 3334444443 4688999999999999998886544 489999999999999998875 21 578999999999888
Q ss_pred CCCceeEEEecccccccCChhhhhcC
Q 027913 191 SDASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++++||+|++.+++++++++..+|++
T Consensus 103 ~~~~~D~i~~~~~~~~~~~~~~~l~~ 128 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTDIQKALRE 128 (223)
T ss_pred CCCcEEEEEEeeeeCCcccHHHHHHH
Confidence 77899999999999999999887764
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=1.1e-12 Score=101.91 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=74.3
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
+++.+. .++.+|||||||+|..+..+++. ...+|+++|+++++++.+++++...++. .+++++.+|+.......++
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCccCCC
Confidence 444443 46789999999999999888753 2468999999999999999999888764 4689999999876445579
Q ss_pred eeEEEecccccccCC
Q 027913 195 VDAVVGTLVLCSVKD 209 (217)
Q Consensus 195 fD~V~~~~~l~~~~d 209 (217)
||+|++..+++++++
T Consensus 143 fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 143 FDAIIVTAAASTIPS 157 (205)
T ss_pred ccEEEEccCcchhhH
Confidence 999999999988864
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.44 E-value=5.9e-13 Score=100.59 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
..-.++||+|||.|.++..|+ ..+.+++++|+|+..++.|+++.... ++|+|+++|+... +++++||+|+++.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA-~rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLA-PRCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHG-GGEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHH-HhhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 455789999999999999998 44678999999999999999998543 5899999999775 57799999999999
Q ss_pred ccccCCh
Q 027913 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
++++.+.
T Consensus 116 lYYL~~~ 122 (201)
T PF05401_consen 116 LYYLDDA 122 (201)
T ss_dssp GGGSSSH
T ss_pred hHcCCCH
Confidence 9999864
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.43 E-value=5.4e-13 Score=103.49 Aligned_cols=83 Identities=25% Similarity=0.297 Sum_probs=70.3
Q ss_pred hcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-cccc--CCCCceeE
Q 027913 122 LRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIP--VSDASVDA 197 (217)
Q Consensus 122 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~--~~~~sfD~ 197 (217)
+..++.+|||||||+|.++..+++ .++.+++|+|+|++|++.+++++...++ .+++++++|+ +.++ +++++||+
T Consensus 37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHHHHHHHHcCccccce
Confidence 334677999999999999999876 3557899999999999999999988776 5899999999 7776 77889999
Q ss_pred EEecccccc
Q 027913 198 VVGTLVLCS 206 (217)
Q Consensus 198 V~~~~~l~~ 206 (217)
|++.+...+
T Consensus 115 V~~~~~~p~ 123 (202)
T PRK00121 115 IYLNFPDPW 123 (202)
T ss_pred EEEECCCCC
Confidence 998776543
No 56
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=2.1e-12 Score=100.87 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
+++.+. .++.+|||||||+|+++..+++. ...+|+++|+++++++.+++++...++ .+++++.+|......+.+.
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCC
Confidence 444443 47889999999999999888763 346899999999999999999988887 5899999998876556689
Q ss_pred eeEEEecccccccC
Q 027913 195 VDAVVGTLVLCSVK 208 (217)
Q Consensus 195 fD~V~~~~~l~~~~ 208 (217)
||+|++...+++++
T Consensus 146 fD~I~~~~~~~~~~ 159 (212)
T PRK13942 146 YDRIYVTAAGPDIP 159 (212)
T ss_pred cCEEEECCCcccch
Confidence 99999988877764
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.42 E-value=1e-12 Score=115.56 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=70.1
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~ 201 (217)
++.+|||||||+|..+..+++ .++.+++|+|+|+.|++.|+++....+ .++.++++|...+| +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 788999999999999888875 567899999999999999998876554 46889999998887 788999999999
Q ss_pred cccccc
Q 027913 202 LVLCSV 207 (217)
Q Consensus 202 ~~l~~~ 207 (217)
.++|++
T Consensus 495 ~vLH~L 500 (677)
T PRK06922 495 SILHEL 500 (677)
T ss_pred hHHHhh
Confidence 999875
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.40 E-value=3.3e-12 Score=100.03 Aligned_cols=89 Identities=22% Similarity=0.176 Sum_probs=73.2
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
+++.+. .++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++.+.++ .+++++.+|+.........
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCcccCCcccCC
Confidence 334343 478899999999999998888632 34699999999999999999999887 5899999999776444568
Q ss_pred eeEEEecccccccC
Q 027913 195 VDAVVGTLVLCSVK 208 (217)
Q Consensus 195 fD~V~~~~~l~~~~ 208 (217)
||+|++.....+++
T Consensus 147 fD~Ii~~~~~~~~~ 160 (215)
T TIGR00080 147 YDRIYVTAAGPKIP 160 (215)
T ss_pred CCEEEEcCCccccc
Confidence 99999988777765
No 59
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.37 E-value=3.5e-12 Score=102.38 Aligned_cols=90 Identities=22% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
.+++|||||||.|+++..++......|+|+|++...+-..+-...-.+.. ..+.++-.-++.+|. .+.||+|+|..+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 89999999999999999998776678999999998765544332223321 233444457788886 6899999999999
Q ss_pred cccCChhhhhcC
Q 027913 205 CSVKDVDMTLQA 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
+|..+|..+|++
T Consensus 193 YHrr~Pl~~L~~ 204 (315)
T PF08003_consen 193 YHRRSPLDHLKQ 204 (315)
T ss_pred hccCCHHHHHHH
Confidence 999999988864
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=6.2e-12 Score=89.49 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=69.5
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~s 194 (217)
+++.+. .++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++ .+++++..|+.. ++....+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--SNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--CceEEEeccccccChhhcCC
Confidence 444444 35679999999999999999874 457899999999999999999888776 478999998765 3333468
Q ss_pred eeEEEeccccccc
Q 027913 195 VDAVVGTLVLCSV 207 (217)
Q Consensus 195 fD~V~~~~~l~~~ 207 (217)
||+|++.......
T Consensus 89 ~D~v~~~~~~~~~ 101 (124)
T TIGR02469 89 PDRVFIGGSGGLL 101 (124)
T ss_pred CCEEEECCcchhH
Confidence 9999997765543
No 61
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.37 E-value=1.6e-12 Score=99.09 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=67.8
Q ss_pred HHHHHHHHHhc---CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccc
Q 027913 113 GYKSQLFDNLR---GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI 188 (217)
Q Consensus 113 ~~~~~i~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l 188 (217)
+...+.++.+. ..+.-|||||||+|..+..+. ..++..+|+|+|+.|++.|.+.-.+ | +++.+|+ +.+
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~Gl 106 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGL 106 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCC
Confidence 33444455544 336789999999998887775 6679999999999999999974322 2 4777776 568
Q ss_pred cCCCCceeEEEecccccccC
Q 027913 189 PVSDASVDAVVGTLVLCSVK 208 (217)
Q Consensus 189 ~~~~~sfD~V~~~~~l~~~~ 208 (217)
||.+++||.+|++-++.++=
T Consensus 107 pfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCCCCccceEEEeeeeeeec
Confidence 99999999999988777653
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=6.2e-12 Score=98.91 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~ 203 (217)
.+.+|||+|||+|.++..+++ .+..++++|+++.+++.+++++...+. .++.+...|+.+++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 578999999999999988875 355799999999999999998877664 3688999999887644 378999999999
Q ss_pred ccccCChhhhhcC
Q 027913 204 LCSVKDVDMTLQA 216 (217)
Q Consensus 204 l~~~~d~~~~L~e 216 (217)
++|+.++..+|++
T Consensus 122 l~~~~~~~~~l~~ 134 (224)
T TIGR01983 122 LEHVPDPQAFIRA 134 (224)
T ss_pred HHhCCCHHHHHHH
Confidence 9999999887754
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=3.7e-12 Score=100.90 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=75.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~~~ 202 (217)
.++.+|||||||+|.++..+++ .+.+++++|+++.+++.+++++...+. ++.++..|+..++ ..++.||+|++..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 3688999999999999988875 467899999999999999998876663 5788888888775 3457999999999
Q ss_pred cccccCChhhhhcC
Q 027913 203 VLCSVKDVDMTLQA 216 (217)
Q Consensus 203 ~l~~~~d~~~~L~e 216 (217)
+++|++++..+|++
T Consensus 123 ~l~~~~~~~~~l~~ 136 (233)
T PRK05134 123 MLEHVPDPASFVRA 136 (233)
T ss_pred HhhccCCHHHHHHH
Confidence 99999998877653
No 64
>PLN03075 nicotianamine synthase; Provisional
Probab=99.35 E-value=9.8e-12 Score=100.59 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=72.3
Q ss_pred CCCCeEEEECCcCCcchHh-hhh--CCCCeEEEecCCHHHHHHHHHHHHH-cCCCCCCeEEEecccccccCCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKY-YAA--DTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIPVSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~-l~~--~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~l~~~~~sfD~V~ 199 (217)
.++++|+|||||.|.++.. +++ .++.+++|+|+++++++.|++.+.. .++. .+++|.++|+.+.+-..+.||+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhcccccCCcCEEE
Confidence 3789999999998855433 222 4667899999999999999999964 6775 689999999988643347899999
Q ss_pred eccccccc--CChhhhhcC
Q 027913 200 GTLVLCSV--KDVDMTLQA 216 (217)
Q Consensus 200 ~~~~l~~~--~d~~~~L~e 216 (217)
+. +++++ ++++++|+.
T Consensus 201 ~~-ALi~~dk~~k~~vL~~ 218 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEH 218 (296)
T ss_pred Ee-cccccccccHHHHHHH
Confidence 99 88888 577777653
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.34 E-value=2.5e-12 Score=103.66 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCeEEEECCcCCc----chHhhhhC------CCCeEEEecCCHHHHHHHHHHHHH----cC------------------
Q 027913 125 KAKKVLEIGIGTGP----NLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA----AG------------------ 172 (217)
Q Consensus 125 ~~~~vLDiGcG~G~----~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~----~~------------------ 172 (217)
++.+|||+|||+|. ++..+++. .+.+++|+|+|+.|++.|++.... .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 56799999999996 33334331 246899999999999999975310 01
Q ss_pred ----CCCCCeEEEecccccccCCCCceeEEEecccccccCChh--hhhc
Q 027913 173 ----LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD--MTLQ 215 (217)
Q Consensus 173 ----~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~--~~L~ 215 (217)
+. .++.|.+.|+...+++.++||+|+|.++|+|++++. ++++
T Consensus 179 v~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~ 226 (264)
T smart00138 179 VKPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLN 226 (264)
T ss_pred EChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHH
Confidence 11 368999999999887788999999999999997543 4554
No 66
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=3.9e-12 Score=110.85 Aligned_cols=86 Identities=27% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc--cccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~--~l~~~~~sfD~V~~~~ 202 (217)
++.+|||||||+|.++..+++. +.+++|+|+++.|++.+++... .. .++.++++|+. .+++++++||+|++.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~--~~--~~i~~~~~d~~~~~~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING--HY--KNVKFMCADVTSPDLNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc--cC--CceEEEEecccccccCCCCCCEEEEehhh
Confidence 5679999999999999999854 5689999999999998765421 12 57899999996 4577888999999999
Q ss_pred cccccCCh--hhhhc
Q 027913 203 VLCSVKDV--DMTLQ 215 (217)
Q Consensus 203 ~l~~~~d~--~~~L~ 215 (217)
+++|+++. ..+|+
T Consensus 112 ~l~~l~~~~~~~~l~ 126 (475)
T PLN02336 112 LLMYLSDKEVENLAE 126 (475)
T ss_pred hHHhCCHHHHHHHHH
Confidence 99999873 45554
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.32 E-value=5.1e-12 Score=97.42 Aligned_cols=81 Identities=27% Similarity=0.258 Sum_probs=69.2
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~ 200 (217)
...+|||||||+|.++..+++ .+..+++|+|+++.+++.|++++...++ .+++++++|+..++ ++++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--KNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--CCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 566899999999999998886 5677999999999999999999988887 58999999998764 45679999998
Q ss_pred ccccccc
Q 027913 201 TLVLCSV 207 (217)
Q Consensus 201 ~~~l~~~ 207 (217)
++...+.
T Consensus 94 ~~pdpw~ 100 (194)
T TIGR00091 94 NFPDPWP 100 (194)
T ss_pred ECCCcCC
Confidence 8765543
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=7.2e-12 Score=97.80 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=66.3
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC----------CCCCCeEEEecccccccCC-CC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEAIPVS-DA 193 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~v~~~~~d~~~l~~~-~~ 193 (217)
++.+|||+|||.|..+.+|+ ..|.+|+|+|+|+.+++.+.+...... ....+++++++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 66899999999999999998 568899999999999998644221000 0014689999999888642 36
Q ss_pred ceeEEEecccccccCCh
Q 027913 194 SVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 194 sfD~V~~~~~l~~~~d~ 210 (217)
.||.|+...+++|++..
T Consensus 113 ~fD~i~D~~~~~~l~~~ 129 (213)
T TIGR03840 113 PVDAVYDRAALIALPEE 129 (213)
T ss_pred CcCEEEechhhccCCHH
Confidence 79999999999999643
No 69
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.29 E-value=4.1e-11 Score=88.93 Aligned_cols=80 Identities=25% Similarity=0.305 Sum_probs=67.8
Q ss_pred CeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 205 (217)
.+|||+|||+|.++..|++. .....+|+|.|+..++.|+..++..++. ..++|.+.|+..-.+..++||+|+--.++.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcccccceeEEeecCcee
Confidence 39999999999999999963 3345999999999999999999999985 459999999988777788999998765554
Q ss_pred cc
Q 027913 206 SV 207 (217)
Q Consensus 206 ~~ 207 (217)
-+
T Consensus 148 Ai 149 (227)
T KOG1271|consen 148 AI 149 (227)
T ss_pred ee
Confidence 33
No 70
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=2.2e-11 Score=91.86 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=69.2
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++.. . .+++++.+|+.++++++..|
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCccccCC
Confidence 3455554 46679999999999999999865 67899999999999999988743 2 58999999999998877789
Q ss_pred eEEEeccccc
Q 027913 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~V~~~~~l~ 205 (217)
|.|+++.-++
T Consensus 79 d~vi~n~Py~ 88 (169)
T smart00650 79 YKVVGNLPYN 88 (169)
T ss_pred CEEEECCCcc
Confidence 9999875443
No 71
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.27 E-value=1.7e-11 Score=86.53 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEeccc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV 203 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~~ 203 (217)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++. .+++++++|+..+. +++++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999998888644589999999999999999999988875 68999999998886 78899999999776
Q ss_pred ccc
Q 027913 204 LCS 206 (217)
Q Consensus 204 l~~ 206 (217)
+..
T Consensus 80 ~~~ 82 (117)
T PF13659_consen 80 YGP 82 (117)
T ss_dssp TTS
T ss_pred Ccc
Confidence 654
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.27 E-value=4e-11 Score=91.91 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred HHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913 119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD 196 (217)
+..+. .++.+|||||||+|.++..+++ .+..+++++|+++.+++.+++++...++ .+++++.+|.. .+++ ++||
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--~~i~~~~~d~~-~~~~-~~~D 99 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--GNIDIIPGEAP-IELP-GKAD 99 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCeEEEecCch-hhcC-cCCC
Confidence 34443 4778999999999999998886 4457899999999999999999988776 47899999874 3343 5799
Q ss_pred EEEecccccccC
Q 027913 197 AVVGTLVLCSVK 208 (217)
Q Consensus 197 ~V~~~~~l~~~~ 208 (217)
+|++....+++.
T Consensus 100 ~v~~~~~~~~~~ 111 (187)
T PRK08287 100 AIFIGGSGGNLT 111 (187)
T ss_pred EEEECCCccCHH
Confidence 999987665543
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=4.3e-11 Score=91.06 Aligned_cols=79 Identities=20% Similarity=0.121 Sum_probs=66.7
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||+|||+|.++..++... .+++++|+++.|++.+++++...+. +++++.+|....+ .++||+|+++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILFNPPY 92 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEECCCC
Confidence 67899999999999999888543 4899999999999999999987764 6889999986653 3589999999888
Q ss_pred cccCC
Q 027913 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
++.++
T Consensus 93 ~~~~~ 97 (179)
T TIGR00537 93 LPLED 97 (179)
T ss_pred CCCcc
Confidence 77754
No 74
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=5.3e-11 Score=93.01 Aligned_cols=88 Identities=22% Similarity=0.183 Sum_probs=70.7
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD 196 (217)
+++.+. .++.+|||||||+|.++..+++. ..+++++|+++++++.+++++...++ .++.++.+|......+.++||
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL--HNVSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC--CceEEEECCcccCCCcCCCcC
Confidence 344443 47789999999999998877654 35899999999999999999988887 579999999765422347899
Q ss_pred EEEecccccccC
Q 027913 197 AVVGTLVLCSVK 208 (217)
Q Consensus 197 ~V~~~~~l~~~~ 208 (217)
+|++...+++++
T Consensus 147 ~I~~~~~~~~~~ 158 (212)
T PRK00312 147 RILVTAAAPEIP 158 (212)
T ss_pred EEEEccCchhhh
Confidence 999998887764
No 75
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=4e-11 Score=93.10 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=69.2
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
.+++.+. .++.+|||||||+|+++..++. .....|+++|..+.+++.|++++...++ .|+.++++|.....-..+
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTGGG-
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhccccCC
Confidence 3455554 5899999999999999888875 3445799999999999999999999887 599999999876433457
Q ss_pred ceeEEEecccccccC
Q 027913 194 SVDAVVGTLVLCSVK 208 (217)
Q Consensus 194 sfD~V~~~~~l~~~~ 208 (217)
.||.|++......++
T Consensus 141 pfD~I~v~~a~~~ip 155 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIP 155 (209)
T ss_dssp SEEEEEESSBBSS--
T ss_pred CcCEEEEeeccchHH
Confidence 899999999888765
No 76
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.26 E-value=3e-11 Score=101.18 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=72.6
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCC
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDA 193 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~ 193 (217)
+++.+. ..+..+||||||+|.++..+++ .+...++|+|+++.++..+.+++...++ .|+.++++|+..+ .++++
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--KNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHhhhhCCCC
Confidence 344443 3456899999999999999986 5678999999999999999999998888 5899999999765 47889
Q ss_pred ceeEEEecccccc
Q 027913 194 SVDAVVGTLVLCS 206 (217)
Q Consensus 194 sfD~V~~~~~l~~ 206 (217)
++|.|++++...|
T Consensus 192 s~D~I~lnFPdPW 204 (390)
T PRK14121 192 SVEKIFVHFPVPW 204 (390)
T ss_pred ceeEEEEeCCCCc
Confidence 9999998765544
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=6.1e-11 Score=94.78 Aligned_cols=86 Identities=26% Similarity=0.348 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.+++.+...+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...++ .++.++.+|+.. ++++++|
T Consensus 79 ~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~~~~~~f 155 (251)
T TIGR03534 79 AALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--DNVTFLQSDWFE-PLPGGKF 155 (251)
T ss_pred HHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEECchhc-cCcCCce
Confidence 334444335569999999999999999863 466999999999999999999988887 479999999876 4567899
Q ss_pred eEEEeccccc
Q 027913 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~V~~~~~l~ 205 (217)
|+|+++..+.
T Consensus 156 D~Vi~npPy~ 165 (251)
T TIGR03534 156 DLIVSNPPYI 165 (251)
T ss_pred eEEEECCCCC
Confidence 9999865433
No 78
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.24 E-value=7.8e-11 Score=91.13 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred HHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCc
Q 027913 119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDAS 194 (217)
Q Consensus 119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~s 194 (217)
+..+. .++.+|||+|||+|.++..+++ ..+.+++++|+++.+++.+++++...++. .++.++.+|..+. +...+.
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHhhcCCC
Confidence 44444 5788999999999999888765 34568999999999999999999888753 5899999998764 333468
Q ss_pred eeEEEecc
Q 027913 195 VDAVVGTL 202 (217)
Q Consensus 195 fD~V~~~~ 202 (217)
||+|++..
T Consensus 112 ~D~V~~~~ 119 (198)
T PRK00377 112 FDRIFIGG 119 (198)
T ss_pred CCEEEECC
Confidence 99999854
No 79
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=5.8e-11 Score=97.95 Aligned_cols=84 Identities=27% Similarity=0.247 Sum_probs=70.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.++.+|||||||+|.++..+++..+ ..|+++|+++++++.|++++...++ .++.++.+|....+...++||+|++.
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCChhhcccccCCccEEEEC
Confidence 4678999999999999988886433 3699999999999999999988887 58999999987765555789999998
Q ss_pred ccccccCC
Q 027913 202 LVLCSVKD 209 (217)
Q Consensus 202 ~~l~~~~d 209 (217)
..++++++
T Consensus 157 ~g~~~ip~ 164 (322)
T PRK13943 157 VGVDEVPE 164 (322)
T ss_pred CchHHhHH
Confidence 88777653
No 80
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.3e-11 Score=90.39 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=75.9
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.+++.+. .++.+|||||||+|+.+.-+++ ...+|+.+|..++..+.|+++++..|+ .|+.++++|...---+...|
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~--~nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGY--ENVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCC--CceEEEECCcccCCCCCCCc
Confidence 3444554 5889999999999999988875 344899999999999999999999998 57999999987653344899
Q ss_pred eEEEecccccccCC
Q 027913 196 DAVVGTLVLCSVKD 209 (217)
Q Consensus 196 D~V~~~~~l~~~~d 209 (217)
|.|+.+.....+|+
T Consensus 140 D~I~Vtaaa~~vP~ 153 (209)
T COG2518 140 DRIIVTAAAPEVPE 153 (209)
T ss_pred CEEEEeeccCCCCH
Confidence 99999999988875
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.23 E-value=4.8e-11 Score=93.46 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC-------------CCCeEEEecccccccC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-------------LTNFKFLQAVGEAIPV 190 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~d~~~l~~ 190 (217)
.++.+|||+|||.|..+.+|+ ..|.+|+|||+|+.+++.+.+. .++. ..++++.++|+.+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCc
Confidence 356799999999999999998 5688999999999999987432 2211 1478999999998853
Q ss_pred C-CCceeEEEecccccccCC
Q 027913 191 S-DASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 191 ~-~~sfD~V~~~~~l~~~~d 209 (217)
. .+.||.|+...+++|++.
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~ 131 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPE 131 (218)
T ss_pred ccCCCeeEEEehHhHhhCCH
Confidence 3 258999999999999964
No 82
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.22 E-value=6.5e-11 Score=97.56 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=76.2
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
+++.+. .++.+|||||||+|.++..+++ .+..+++++|. +.+++.+++++.+.++. ++++++.+|+.+.++++ +
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~~~~~--~ 216 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYPE--A 216 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCCCCCC--C
Confidence 344443 4668999999999999998886 46679999998 79999999999888875 68999999998766653 6
Q ss_pred eEEEecccccccCCh--hhhhcC
Q 027913 196 DAVVGTLVLCSVKDV--DMTLQA 216 (217)
Q Consensus 196 D~V~~~~~l~~~~d~--~~~L~e 216 (217)
|+|++..++|++++. ..+|++
T Consensus 217 D~v~~~~~lh~~~~~~~~~il~~ 239 (306)
T TIGR02716 217 DAVLFCRILYSANEQLSTIMCKK 239 (306)
T ss_pred CEEEeEhhhhcCChHHHHHHHHH
Confidence 999999999988764 344543
No 83
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.21 E-value=4.3e-12 Score=97.40 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI- 188 (217)
Q Consensus 111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l- 188 (217)
......+++.... ++-.++||+|||||.....+. ......+|+|+|++|+++|.++-... ...++|+..+
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~YD-------~L~~Aea~~Fl 181 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLYD-------TLYVAEAVLFL 181 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccchH-------HHHHHHHHHHh
Confidence 3455556666665 557899999999999988875 45567999999999999999873211 3455555533
Q ss_pred c-CCCCceeEEEecccccccCChhhhh
Q 027913 189 P-VSDASVDAVVGTLVLCSVKDVDMTL 214 (217)
Q Consensus 189 ~-~~~~sfD~V~~~~~l~~~~d~~~~L 214 (217)
+ ..+..||+|++..||.++.+.+.++
T Consensus 182 ~~~~~er~DLi~AaDVl~YlG~Le~~~ 208 (287)
T COG4976 182 EDLTQERFDLIVAADVLPYLGALEGLF 208 (287)
T ss_pred hhccCCcccchhhhhHHHhhcchhhHH
Confidence 2 5668899999999999999887765
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.21 E-value=8.8e-11 Score=95.95 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=66.8
Q ss_pred HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA 197 (217)
Q Consensus 118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~ 197 (217)
+++.+..++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+... ..+++||+
T Consensus 152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~~--~~~~~fDl 228 (288)
T TIGR00406 152 WLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLEQ--PIEGKADV 228 (288)
T ss_pred HHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeccccc--ccCCCceE
Confidence 344444578899999999999998887655568999999999999999999887764 456666666332 34578999
Q ss_pred EEeccccccc
Q 027913 198 VVGTLVLCSV 207 (217)
Q Consensus 198 V~~~~~l~~~ 207 (217)
|+++...+.+
T Consensus 229 Vvan~~~~~l 238 (288)
T TIGR00406 229 IVANILAEVI 238 (288)
T ss_pred EEEecCHHHH
Confidence 9997765443
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.20 E-value=3.3e-10 Score=85.52 Aligned_cols=81 Identities=26% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
+..+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++. +++++..|.... .++++||+|+++--
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~-~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEA-LPDGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--cccccccccccc-ccccceeEEEEccc
Confidence 7889999999999999998864 4447999999999999999999999884 499999998654 34689999999876
Q ss_pred ccccC
Q 027913 204 LCSVK 208 (217)
Q Consensus 204 l~~~~ 208 (217)
++.-.
T Consensus 108 ~~~~~ 112 (170)
T PF05175_consen 108 FHAGG 112 (170)
T ss_dssp SBTTS
T ss_pred hhccc
Confidence 55443
No 86
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.18 E-value=9.2e-11 Score=97.75 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
...+|||+|||+|.++..+++ .+..+++++|+|+.+++.+++++...++ ..+++..|+... .++.||+|+++..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---~~~~~~~D~~~~--~~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---EGEVFASNVFSD--IKGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEcccccc--cCCCccEEEECCC
Confidence 456899999999999998886 3557899999999999999999988875 356777887543 2578999999998
Q ss_pred cccc
Q 027913 204 LCSV 207 (217)
Q Consensus 204 l~~~ 207 (217)
||..
T Consensus 271 FH~g 274 (342)
T PRK09489 271 FHDG 274 (342)
T ss_pred ccCC
Confidence 8863
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.18 E-value=2.1e-10 Score=93.49 Aligned_cols=75 Identities=20% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
++.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.|++++...++. .++.++.+|+... +++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc-cCCCCccEEEEC
Confidence 457999999999999999986 45679999999999999999999988875 5799999998542 345689999986
No 88
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.17 E-value=1.7e-10 Score=95.40 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~ 201 (217)
++.+|||+|||+|.++..+++ .+.+|+|+|+++.+++.|+++++..++ .+++|+++|+..+.. ..+.||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 578999999999999999985 457999999999999999999998887 589999999987642 33579999976
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.16 E-value=2.5e-10 Score=96.00 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=69.1
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~s 194 (217)
+++.+. ..+.+|||+|||+|.++..+++ .+..+|+++|+|+.+++.+++++...+.. ..+++++..|.... +++++
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~ 298 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR 298 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCC
Confidence 444443 2346999999999999999886 56789999999999999999999776542 13788999887543 34568
Q ss_pred eeEEEeccccccc
Q 027913 195 VDAVVGTLVLCSV 207 (217)
Q Consensus 195 fD~V~~~~~l~~~ 207 (217)
||+|+++--+|..
T Consensus 299 fDlIlsNPPfh~~ 311 (378)
T PRK15001 299 FNAVLCNPPFHQQ 311 (378)
T ss_pred EEEEEECcCcccC
Confidence 9999998777654
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.15 E-value=2.7e-10 Score=96.22 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CC
Q 027913 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SD 192 (217)
Q Consensus 115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~ 192 (217)
...+++.+. ++.+|||+|||+|.++..++. .++.+++++|+|+.|++.|++++...+. ++.++++|+.+..+ ..
T Consensus 242 Ve~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 242 VEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA---RVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEcchhccccccC
Confidence 333333332 456999999999999988875 4677999999999999999999987763 78999999865433 24
Q ss_pred CceeEEEecc
Q 027913 193 ASVDAVVGTL 202 (217)
Q Consensus 193 ~sfD~V~~~~ 202 (217)
++||+|+++-
T Consensus 318 ~~FDLIVSNP 327 (423)
T PRK14966 318 GKWDIIVSNP 327 (423)
T ss_pred CCccEEEECC
Confidence 5899999965
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=99.15 E-value=2.9e-10 Score=89.53 Aligned_cols=75 Identities=25% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.++.+|||+|||+|.++..+++....+++++|+++.+++.+++++...++ ++.++.+|+... +++++||+|+++-
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-ccCCCeeEEEECC
Confidence 36789999999999999888865445899999999999999999887764 578899998764 4567899999974
No 92
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=91.49 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~ 201 (217)
...+|||||||+|.....+++. ...+++|||+.+.+.+.|++++...+|. .++.++++|+..+. ..-.+||+|+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcccccccCEEEeC
Confidence 5789999999999999999875 4489999999999999999999998887 89999999999885 444579999997
Q ss_pred ccccc
Q 027913 202 LVLCS 206 (217)
Q Consensus 202 ~~l~~ 206 (217)
--+.-
T Consensus 123 PPyf~ 127 (248)
T COG4123 123 PPYFK 127 (248)
T ss_pred CCCCC
Confidence 65443
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=3.7e-10 Score=92.87 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I 188 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l 188 (217)
......+...+. ++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++...... .++.++++|+.. +
T Consensus 51 ~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~-~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ-LEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC-ceEEEEEEcccchh
Confidence 344444554443 56899999999999999888653 578999999999999999988654321 367889999976 3
Q ss_pred cCCCC----ceeEEEecccccccCC
Q 027913 189 PVSDA----SVDAVVGTLVLCSVKD 209 (217)
Q Consensus 189 ~~~~~----sfD~V~~~~~l~~~~d 209 (217)
++... ...++++..++++++.
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~ 153 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTP 153 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCH
Confidence 44332 2344555567888864
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=1.9e-10 Score=89.67 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~ 193 (217)
.++.+|||||||+|.++..+++. ....|+|||+++ | ..+ .++.++++|+...+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 57789999999999999988864 335899999998 2 112 46899999998853 6678
Q ss_pred ceeEEEecccccccCC
Q 027913 194 SVDAVVGTLVLCSVKD 209 (217)
Q Consensus 194 sfD~V~~~~~l~~~~d 209 (217)
+||+|++..++++..+
T Consensus 117 ~~D~V~S~~~~~~~g~ 132 (209)
T PRK11188 117 KVQVVMSDMAPNMSGT 132 (209)
T ss_pred CCCEEecCCCCccCCC
Confidence 9999999887776544
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=4e-10 Score=92.72 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=62.8
Q ss_pred CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. .+++++.+|+... +++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh-CCCCCccEEEEC
Confidence 7899999999999998886 45679999999999999999999888874 5799999998542 345689999986
No 96
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.13 E-value=3.3e-10 Score=94.28 Aligned_cols=76 Identities=26% Similarity=0.280 Sum_probs=67.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.++.+|||+|||+|.++..++ ..+.+++|+|+++.|++.++++++..++. ++.++++|+..+|+.+++||+|++.-
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEEECC
Confidence 477899999999999887765 45778999999999999999999988884 58999999999998888999999963
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=5.2e-10 Score=91.23 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=62.4
Q ss_pred CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.+|||+|||+|.++..++. .++.+++|+|+|+.+++.|++++...++. .+++|+++|+.. ++++.+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFE-PLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhc-cCcCCCccEEEEC
Confidence 6899999999999998886 34579999999999999999999888874 469999999865 3444589999986
No 98
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.1e-10 Score=85.04 Aligned_cols=74 Identities=24% Similarity=0.209 Sum_probs=62.4
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
.+++|+|+|||||.++...+-.....|+++|+.+++++.++++..+.+ .+++|+++|+.++. +.||.|+++--|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceEEECCCC
Confidence 778999999999999887764445799999999999999999998843 68999999999884 568888876433
No 99
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.12 E-value=2.4e-11 Score=94.01 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 192 (217)
.|...+..... ....++|+|||+|.-++-++ ....+|+|+|+|+.||+.|++........ ........++.+|--.+
T Consensus 22 dw~~~ia~~~~-~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 22 DWFKKIASRTE-GHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHHHhhCC-CcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccccCCC
Confidence 33334444432 22389999999997666666 44568999999999999998764322211 11222233333443347
Q ss_pred CceeEEEecccccccCChhhhhcC
Q 027913 193 ASVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
+++|+|++..++|++. .+++.++
T Consensus 99 ~SVDlI~~Aqa~HWFd-le~fy~~ 121 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWFD-LERFYKE 121 (261)
T ss_pred cceeeehhhhhHHhhc-hHHHHHH
Confidence 8999999999999995 4555443
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.12 E-value=2.7e-10 Score=77.40 Aligned_cols=86 Identities=30% Similarity=0.390 Sum_probs=68.6
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEecccccc
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS 206 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~~~l~~ 206 (217)
+|||+|||.|.++..+++....+++++|+++.+++.+++.....+. .++.++..|..+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999988865677999999999999999864433333 578999999988764 5678999999999988
Q ss_pred -cCChhhhhc
Q 027913 207 -VKDVDMTLQ 215 (217)
Q Consensus 207 -~~d~~~~L~ 215 (217)
..+....++
T Consensus 79 ~~~~~~~~l~ 88 (107)
T cd02440 79 LVEDLARFLE 88 (107)
T ss_pred hhhHHHHHHH
Confidence 555555443
No 101
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.11 E-value=5e-10 Score=90.10 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=67.3
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
...+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.|++.+++++.. . .+++++.+|+..++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccCCch--
Confidence 334444443 46789999999999999999865 56899999999999999988754 2 5899999999998765
Q ss_pred ceeEEEeccccc
Q 027913 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~V~~~~~l~ 205 (217)
.||.|+++.-++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489998875543
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=2.9e-10 Score=90.92 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
...+|||+|||+|.++..++.. .+.+++|+|+++.|++.++++. .+++++++|+..+.. +.+||+|+++-.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence 4679999999999988877653 3579999999999999998864 467899999988753 468999999988
Q ss_pred ccccCC
Q 027913 204 LCSVKD 209 (217)
Q Consensus 204 l~~~~d 209 (217)
+.+.+.
T Consensus 136 F~~l~~ 141 (279)
T PHA03411 136 FGKINT 141 (279)
T ss_pred ccccCc
Confidence 888653
No 103
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.10 E-value=1.1e-09 Score=82.37 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=76.6
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190 (217)
Q Consensus 113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~ 190 (217)
+.+...+.++. .++.+++|||||+|..+..++. .+..+++++|-++++++..+++..+.++ +|++++.+|+.+.--
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEeccchHhhc
Confidence 34444566666 6889999999999999998884 6677999999999999999999999997 799999999876522
Q ss_pred CCCceeEEEecccccccCCh
Q 027913 191 SDASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~d~ 210 (217)
...+||.|+.... ..++..
T Consensus 99 ~~~~~daiFIGGg-~~i~~i 117 (187)
T COG2242 99 DLPSPDAIFIGGG-GNIEEI 117 (187)
T ss_pred CCCCCCEEEECCC-CCHHHH
Confidence 2227999998877 555443
No 104
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=5e-10 Score=96.81 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=68.1
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---- 188 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---- 188 (217)
+...+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+|++|++.|++++...++ .+++|+++|+.+.
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~--~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL--DNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEeChHHhhhhh
Confidence 3334444443 46789999999999999998854 46899999999999999999988887 5799999998653
Q ss_pred cCCCCceeEEEec
Q 027913 189 PVSDASVDAVVGT 201 (217)
Q Consensus 189 ~~~~~sfD~V~~~ 201 (217)
++.+++||+|++.
T Consensus 362 ~~~~~~fD~Vi~d 374 (443)
T PRK13168 362 PWALGGFDKVLLD 374 (443)
T ss_pred hhhcCCCCEEEEC
Confidence 3445789999974
No 105
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=4.8e-10 Score=90.66 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=63.2
Q ss_pred HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD 196 (217)
Q Consensus 117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD 196 (217)
++++++..++++|||+|||+|-++...++-....++|+|+.|..++.+++++..+++.. .+.....+....+ ..+.||
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~~-~~~~~D 231 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEVP-ENGPFD 231 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhhc-ccCccc
Confidence 44555556899999999999999998886666689999999999999999999988741 2222233332222 336999
Q ss_pred EEEecc
Q 027913 197 AVVGTL 202 (217)
Q Consensus 197 ~V~~~~ 202 (217)
+|+++-
T Consensus 232 vIVANI 237 (300)
T COG2264 232 VIVANI 237 (300)
T ss_pred EEEehh
Confidence 999875
No 106
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.07 E-value=4.7e-10 Score=90.94 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=63.1
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.+++.+. .++.+|||||||+|.++..+++.. .+++|+|+++.|++.+++++.. .+++++++|+..+++++-.+
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCc
Confidence 3444444 477899999999999999998654 4899999999999999987632 47899999999987654225
Q ss_pred eEEEecc
Q 027913 196 DAVVGTL 202 (217)
Q Consensus 196 D~V~~~~ 202 (217)
|.|+++.
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 7777764
No 107
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=83.01 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
++.+|||+|||+|.++..+++. +.+++++|+++++++.+++++...++....+.++..|+.+. +.+.+||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 7789999999999999998865 78999999999999999999988776412288999987663 455689999987654
Q ss_pred c
Q 027913 205 C 205 (217)
Q Consensus 205 ~ 205 (217)
.
T Consensus 101 ~ 101 (188)
T PRK14968 101 L 101 (188)
T ss_pred C
Confidence 3
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.07 E-value=5.8e-10 Score=89.36 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+..+ +.+||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~--------~~~fD~Vvani~ 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQG--------DLKADVIVANIL 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccC--------CCCcCEEEEcCc
Confidence 478899999999999888776544446999999999999999999877753 23333222 227999998765
Q ss_pred cc
Q 027913 204 LC 205 (217)
Q Consensus 204 l~ 205 (217)
.+
T Consensus 189 ~~ 190 (250)
T PRK00517 189 AN 190 (250)
T ss_pred HH
Confidence 44
No 109
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.07 E-value=1.1e-09 Score=89.22 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
..-++++.+..++++|||+|||+|-++...++....+|+|+|+++..++.|++++..+++. .++.+. .... ...+
T Consensus 150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~~--~~~~ 224 (295)
T PF06325_consen 150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSED--LVEG 224 (295)
T ss_dssp HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTSC--TCCS
T ss_pred HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eecc--cccc
Confidence 3334455555688999999999999998887665568999999999999999999999986 355442 2222 2348
Q ss_pred ceeEEEecccc
Q 027913 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~V~~~~~l 204 (217)
.||+|+++-..
T Consensus 225 ~~dlvvANI~~ 235 (295)
T PF06325_consen 225 KFDLVVANILA 235 (295)
T ss_dssp -EEEEEEES-H
T ss_pred cCCEEEECCCH
Confidence 99999987543
No 110
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.06 E-value=8.7e-10 Score=90.04 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=69.3
Q ss_pred HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
..+++... .++.+|||||||+|.++..+++. +.+++++|+++.|++.+++++...+.. .+++++.+|+...+++ .
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~~--~ 101 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEFP--Y 101 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhccc--c
Confidence 34444444 47789999999999999998853 568999999999999999998766533 6899999999887653 6
Q ss_pred eeEEEecccccccCC
Q 027913 195 VDAVVGTLVLCSVKD 209 (217)
Q Consensus 195 fD~V~~~~~l~~~~d 209 (217)
||.|+++ ..+++..
T Consensus 102 ~d~VvaN-lPY~Ist 115 (294)
T PTZ00338 102 FDVCVAN-VPYQISS 115 (294)
T ss_pred cCEEEec-CCcccCc
Confidence 8988864 4444443
No 111
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=1.8e-09 Score=83.38 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=62.2
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCc
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDAS 194 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~s 194 (217)
++..+. .++.+|||+|||+|.++..+++ .++.+++++|+++.+++.+++++...++ .+++++.+|+.. ++.....
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--KNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCeEEEECchHHHHhhCCCC
Confidence 344443 4678999999999999888875 4567999999999999999999988887 479999999865 2221234
Q ss_pred eeEEEe
Q 027913 195 VDAVVG 200 (217)
Q Consensus 195 fD~V~~ 200 (217)
+|.|+.
T Consensus 110 ~d~v~~ 115 (196)
T PRK07402 110 PDRVCI 115 (196)
T ss_pred CCEEEE
Confidence 576654
No 112
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-09 Score=88.09 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
..++.|||+|||+|.++...++....+|++||-|. +.+.|++.+..+++. ..++++.+.++++.+|..++|+|++-++
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-DVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-ceEEEeecceEEEecCccceeEEeehhh
Confidence 48899999999999999888877788999999875 459999999999986 6799999999998877889999999776
Q ss_pred cccc
Q 027913 204 LCSV 207 (217)
Q Consensus 204 l~~~ 207 (217)
=+++
T Consensus 137 Gy~L 140 (346)
T KOG1499|consen 137 GYFL 140 (346)
T ss_pred hHHH
Confidence 5443
No 113
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.03 E-value=2.3e-09 Score=82.75 Aligned_cols=77 Identities=8% Similarity=-0.020 Sum_probs=63.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~~~ 203 (217)
++.+|||+|||+|.++..++.....+|+++|.++.+++.++++++..++ .+++++.+|+... +...++||+|++.--
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--GNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 5679999999999999865444457999999999999999999988887 4899999998764 223457999998654
No 114
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=1.1e-09 Score=85.88 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=67.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH--------c--CCCCCCeEEEecccccccCC--
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA--------A--GLPLTNFKFLQAVGEAIPVS-- 191 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~~~v~~~~~d~~~l~~~-- 191 (217)
.++.+||+.|||.|..+.+|+ ..|.+|+|+|+|+..++.+.+.... . -....+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 356899999999999999998 5678899999999999988663200 0 00114789999999998632
Q ss_pred -CCceeEEEecccccccCCh
Q 027913 192 -DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 192 -~~sfD~V~~~~~l~~~~d~ 210 (217)
.+.||+|+-..+|++++..
T Consensus 121 ~~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPND 140 (226)
T ss_pred ccCCcCeeeeehhHhcCCHH
Confidence 2689999999999999753
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=1.8e-09 Score=94.55 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
++.+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. .++.++.+|+... +++++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh-CcCCCccEEEECC
Confidence 346899999999999988875 45679999999999999999999888765 5789999997542 3456899999863
No 116
>PHA03412 putative methyltransferase; Provisional
Probab=98.98 E-value=1e-09 Score=85.87 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=61.4
Q ss_pred CCCeEEEECCcCCcchHhhhhC----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
.+.+|||+|||+|.++..+++. ...+++++|+++.+++.|+++. .++.++.+|+...++ +++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEE
Confidence 5679999999999999887753 3458999999999999999875 357899999987665 468999999
Q ss_pred ccccccc
Q 027913 201 TLVLCSV 207 (217)
Q Consensus 201 ~~~l~~~ 207 (217)
+--+.-.
T Consensus 121 NPPY~~~ 127 (241)
T PHA03412 121 NPPFGKI 127 (241)
T ss_pred CCCCCCc
Confidence 7655543
No 117
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.97 E-value=7.3e-10 Score=82.81 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=55.9
Q ss_pred EEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCCceeEEEecccccccCChhhhhcCC
Q 027913 152 LGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP 217 (217)
Q Consensus 152 ~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e~ 217 (217)
+|+|+|++|++.|+++....+.. ..+++|+++|++++|+++++||+|++.+++++++|+.++|+|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence 58999999999998776432210 1479999999999999999999999999999999999998763
No 118
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.5e-09 Score=85.37 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=58.4
Q ss_pred eEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
+|||||||+|..+..++.. +...|+|+|+|+.+++.|++++...++ .++.++..|...- +. ++||+|+++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~-~~-~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP-LR-GKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-cC-CceeEEEeCC
Confidence 7999999999999999864 446999999999999999999999987 4667777764332 23 4899999863
No 119
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=6.9e-09 Score=84.10 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.++.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++. .... .++.++.+|+... +++++||+|+++-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~-~~i~~~~~d~~~~-~~~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG-ARVEFLQGDWFEP-LPGGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC-CcEEEEEccccCc-CCCCceeEEEECC
Confidence 36789999999999999988863 45799999999999999999987 2222 5899999998543 3457899999864
No 120
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6e-09 Score=83.96 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=69.0
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
+++.+. ..+.+|||+|||.|.++..+++ .+..+++-+|.|...++.+++++...++. +..++..|+-. +.++ +|
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~-~v~~-kf 225 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYE-PVEG-KF 225 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEecccc-cccc-cc
Confidence 455555 3456999999999999999987 55689999999999999999999988873 44555555433 3343 99
Q ss_pred eEEEecccccccCCh
Q 027913 196 DAVVGTLVLCSVKDV 210 (217)
Q Consensus 196 D~V~~~~~l~~~~d~ 210 (217)
|+|+|+--||--.+.
T Consensus 226 d~IisNPPfh~G~~v 240 (300)
T COG2813 226 DLIISNPPFHAGKAV 240 (300)
T ss_pred cEEEeCCCccCCcch
Confidence 999999888855443
No 121
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.93 E-value=6.9e-09 Score=82.28 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-----CCCCcee
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-----VSDASVD 196 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-----~~~~sfD 196 (217)
++++|||||||+|+.+..++.. .+.+++++|+++++++.|++++...++. .+++++.+|+.+. + .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 7889999999999987777752 3569999999999999999999999986 6899999998764 2 1246899
Q ss_pred EEEec
Q 027913 197 AVVGT 201 (217)
Q Consensus 197 ~V~~~ 201 (217)
+|+.-
T Consensus 147 ~VfiD 151 (234)
T PLN02781 147 FAFVD 151 (234)
T ss_pred EEEEC
Confidence 99874
No 122
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.7e-09 Score=75.75 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
..++.++|+|||.|.+....+-.....++|+|+.++.++.+.+++.+..+ +++++++|+.++-+..+.||.++.+--
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEeeEEecCC
Confidence 48899999999999988666534456899999999999999999988876 679999999998877799999998765
Q ss_pred cc
Q 027913 204 LC 205 (217)
Q Consensus 204 l~ 205 (217)
|.
T Consensus 124 FG 125 (185)
T KOG3420|consen 124 FG 125 (185)
T ss_pred CC
Confidence 53
No 123
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.92 E-value=4.8e-09 Score=89.09 Aligned_cols=77 Identities=19% Similarity=0.107 Sum_probs=64.0
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--C--CCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--V--SDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~--~~~sfD~V~~ 200 (217)
++++|||+|||+|.++...+.....+|+++|+|+.+++.|++++...++...+++++++|+.++. + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 67899999999999887765454568999999999999999999988874347999999987752 2 3468999997
Q ss_pred c
Q 027913 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 300 D 300 (396)
T PRK15128 300 D 300 (396)
T ss_pred C
Confidence 5
No 124
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=6.8e-09 Score=89.52 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V~ 199 (217)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.+|+... ++.+++||+|+
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI--ANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 35689999999999999999854 46899999999999999999988887 5899999998763 23456799998
Q ss_pred e
Q 027913 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 368 ~ 368 (431)
T TIGR00479 368 L 368 (431)
T ss_pred E
Confidence 6
No 125
>PRK04266 fibrillarin; Provisional
Probab=98.91 E-value=4.9e-09 Score=82.57 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V 198 (217)
.++.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++.. .|+.++.+|+... ++. ++||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence 578899999999999999988633 458999999999999888776543 4789999998652 233 569999
Q ss_pred Eec
Q 027913 199 VGT 201 (217)
Q Consensus 199 ~~~ 201 (217)
++.
T Consensus 146 ~~d 148 (226)
T PRK04266 146 YQD 148 (226)
T ss_pred EEC
Confidence 853
No 126
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=6e-09 Score=90.13 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=63.5
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
.++.+|||+|||+|..+..+++ ..+.+++++|+++.+++.+++++...|+ .+++++++|+..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--TIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--CeEEEEeCcccccc-cCCCCCEEEE
Confidence 4778999999999998877765 2345899999999999999999999887 47999999998875 4578999995
No 127
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.90 E-value=7.1e-09 Score=83.22 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=63.6
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
...+++.+. .++.+|||||||+|.++..+++.. ..++++|+++.+++.++++... . .+++++.+|+..++++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~--~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--Y--ERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--C--CcEEEEECchhcCChh--
Confidence 334555444 467899999999999999998543 5699999999999999987643 2 5899999999998765
Q ss_pred cee---EEEeccc
Q 027913 194 SVD---AVVGTLV 203 (217)
Q Consensus 194 sfD---~V~~~~~ 203 (217)
.|| +|+++..
T Consensus 91 ~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 DFPKQLKVVSNLP 103 (253)
T ss_pred HcCCcceEEEcCC
Confidence 466 6666544
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=2e-08 Score=82.74 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEe-ccccccc----CCCCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQ-AVGEAIP----VSDASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~-~d~~~l~----~~~~sfD~ 197 (217)
.+.++||||||+|.....++. .++.+++|+|+++.+++.|++++... ++. .+++++. .|...+. .+++.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCceEE
Confidence 567999999999977666653 56789999999999999999999988 675 5787764 3433332 24578999
Q ss_pred EEecccccc
Q 027913 198 VVGTLVLCS 206 (217)
Q Consensus 198 V~~~~~l~~ 206 (217)
|+|+=-++-
T Consensus 193 ivcNPPf~~ 201 (321)
T PRK11727 193 TLCNPPFHA 201 (321)
T ss_pred EEeCCCCcC
Confidence 999866553
No 129
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.90 E-value=9.4e-09 Score=86.97 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=62.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~ 201 (217)
++.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..++ .+++|+.+|+.++.. ...+||+|+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGL--DNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 567999999999999998884 457899999999999999999988887 489999999977531 12469999874
No 130
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.89 E-value=2e-08 Score=77.80 Aligned_cols=88 Identities=20% Similarity=0.242 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI- 188 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l- 188 (217)
......++... .+++|||||+++|+.+..+++. .+.+++.+|++++..+.|++.++..|+. ++++++.+|+.+.
T Consensus 34 g~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l 110 (205)
T PF01596_consen 34 GQLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVL 110 (205)
T ss_dssp HHHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHH
T ss_pred HHHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhH
Confidence 34444455555 8899999999999999999973 3579999999999999999999999986 7999999998763
Q ss_pred c-----CCCCceeEEEecc
Q 027913 189 P-----VSDASVDAVVGTL 202 (217)
Q Consensus 189 ~-----~~~~sfD~V~~~~ 202 (217)
+ .+.++||+|+.-.
T Consensus 111 ~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES
T ss_pred HHHHhccCCCceeEEEEcc
Confidence 2 1235899999643
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.89 E-value=1.5e-08 Score=81.20 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=57.9
Q ss_pred CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEecc
Q 027913 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~~ 202 (217)
+.+|||+|||+|.++..+++ .++.+++++|+|+.+++.|++++...+ ++++++|+.+. + ...++||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999988875 456789999999999999999987654 36889998653 2 1135799999864
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=7.9e-09 Score=88.91 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~ 200 (217)
.++.+|||+|||+|..+..++.. .+.+++++|+++.+++.+++++...|+ .+++++++|+..++ +.+++||.|++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~--~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL--SSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEECchhhhhhhhhccCCEEEE
Confidence 47789999999999998888763 356899999999999999999999888 47999999998876 45678999986
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.89 E-value=6.9e-09 Score=83.77 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
.++.+|||+|||+|..+..+++. ....|+++|+++.+++.++++++..++ .++.++..|...++...+.||.|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--LNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--CcEEEecCCHHHhhhhccCCCEEEE
Confidence 47789999999999999888763 235899999999999999999999887 5799999999887655567999986
No 134
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=1e-08 Score=79.02 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=63.7
Q ss_pred CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c--CCCCceeEEEec
Q 027913 126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~sfD~V~~~ 201 (217)
...+||||||.|.++..+|. .++..++|+|+....+..+.+++...++ .|+.++++|+..+ . ++++++|.|+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEEe
Confidence 34899999999999999986 7889999999999999999999999888 6999999999883 2 567899999876
Q ss_pred ccccc
Q 027913 202 LVLCS 206 (217)
Q Consensus 202 ~~l~~ 206 (217)
+-=.|
T Consensus 96 FPDPW 100 (195)
T PF02390_consen 96 FPDPW 100 (195)
T ss_dssp S----
T ss_pred CCCCC
Confidence 64333
No 135
>PRK04457 spermidine synthase; Provisional
Probab=98.88 E-value=7.8e-09 Score=83.30 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=61.4
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~ 201 (217)
++++|||||||+|.++..+++ .++.+++++|+++++++.|++.+...+.. ++++++.+|+... .-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 678999999999999998875 45679999999999999999987544322 5899999998654 2223689999974
No 136
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.5e-08 Score=87.49 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA 197 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~ 197 (217)
.++.+|||+|||+|..+..+++. ....++++|+++.+++.+++++...|+ .+++++.+|+..++ +..++||.
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL--KSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--CeEEEEeCChhhcccccccccccCCE
Confidence 47789999999999999888863 345899999999999999999999998 47999999998875 44678999
Q ss_pred EEec------ccccccCC
Q 027913 198 VVGT------LVLCSVKD 209 (217)
Q Consensus 198 V~~~------~~l~~~~d 209 (217)
|++- .++++.++
T Consensus 329 Vl~DaPCSg~G~~~r~p~ 346 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPD 346 (434)
T ss_pred EEEeCCCCcccccccCcc
Confidence 9962 35555554
No 137
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=4.2e-09 Score=81.17 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.....++|||||-|...+.+..+.-.+++-+|.|-.|++.++..- ..+ -.+...++|-+.++|.+++||+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~---i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS---IETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc---eEEEEEecchhcccccccchhhhhhhhh
Confidence 356789999999999999988666678999999999999988652 223 2577889999999999999999999999
Q ss_pred ccccCChhhhh
Q 027913 204 LCSVKDVDMTL 214 (217)
Q Consensus 204 l~~~~d~~~~L 214 (217)
+||++|....+
T Consensus 147 lHW~NdLPg~m 157 (325)
T KOG2940|consen 147 LHWTNDLPGSM 157 (325)
T ss_pred hhhhccCchHH
Confidence 99999876543
No 138
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=1.5e-08 Score=82.66 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=64.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--C-CCCCeEEEecccccc-cCCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNFKFLQAVGEAI-PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~v~~~~~d~~~l-~~~~~sfD~V 198 (217)
..+++||+||||+|..++.+++.+ ..+|++||+++++++.|++.+...+ . ..++++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 467899999999999999988764 4689999999999999999886432 1 236899999998775 2345789999
Q ss_pred Eeccc
Q 027913 199 VGTLV 203 (217)
Q Consensus 199 ~~~~~ 203 (217)
++-..
T Consensus 155 i~D~~ 159 (283)
T PRK00811 155 IVDST 159 (283)
T ss_pred EECCC
Confidence 98543
No 139
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.86 E-value=1.6e-08 Score=83.89 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC---------CCCCCeEEEeccccccc----CC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAIP----VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~v~~~~~d~~~l~----~~ 191 (217)
++.+|||||||.|.-+..+....-..++|+|++...|+.|+++..+.. .. -...|+.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhhhcc
Confidence 778999999999988888877777799999999999999999993311 00 14567888775321 33
Q ss_pred C--CceeEEEecccccccCCh
Q 027913 192 D--ASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 192 ~--~sfD~V~~~~~l~~~~d~ 210 (217)
+ ..||+|-|-++||+.=..
T Consensus 141 ~~~~~FDvVScQFalHY~Fes 161 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFES 161 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSS
T ss_pred ccCCCcceeehHHHHHHhcCC
Confidence 3 599999999999987443
No 140
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=4.4e-08 Score=84.36 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=59.0
Q ss_pred CCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 126 AKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
++.|||||||+|.+....++. ...+|++||.|+.++...+++++..++. ++|+++.+|++++..+ .++|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccCCCCC-CceeEEEE
Confidence 578999999999997665543 2469999999999998888887888886 7899999999999765 48999998
Q ss_pred ccc
Q 027913 201 TLV 203 (217)
Q Consensus 201 ~~~ 203 (217)
-.+
T Consensus 265 ElL 267 (448)
T PF05185_consen 265 ELL 267 (448)
T ss_dssp ---
T ss_pred ecc
Confidence 554
No 141
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=1.9e-08 Score=86.63 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=62.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~ 200 (217)
.++.+|||+|||+|..+..+++.. +..++++|+++.+++.+++++...++ ++.++++|+..++ +..++||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCEEEE
Confidence 478899999999999998888643 36899999999999999999988886 4689999998764 34578999994
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.84 E-value=1.4e-08 Score=92.39 Aligned_cols=77 Identities=19% Similarity=0.100 Sum_probs=64.8
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~~ 201 (217)
++++|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++...+++++++|+.+.. -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 67899999999999999998654457999999999999999999988874347999999986642 114689999984
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=2.5e-08 Score=86.35 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~ 199 (217)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...++ .+++++++|+..++ ++ ++||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--TNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCCcccccchhc-ccCCEEE
Confidence 46789999999999999888863 356899999999999999999999888 46999999998763 33 7899999
Q ss_pred ec
Q 027913 200 GT 201 (217)
Q Consensus 200 ~~ 201 (217)
+.
T Consensus 326 ~D 327 (444)
T PRK14902 326 VD 327 (444)
T ss_pred Ec
Confidence 74
No 144
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.79 E-value=4.8e-08 Score=79.34 Aligned_cols=97 Identities=22% Similarity=0.368 Sum_probs=76.3
Q ss_pred hhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913 103 SMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~ 181 (217)
++..|-+ ...+.+.+++... ..++.|||+|||+|.+....++....+|++|+-| +|.++|++.++...+. +++.++
T Consensus 155 MmQDYVR-TgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~-~rItVI 231 (517)
T KOG1500|consen 155 MMQDYVR-TGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA-DRITVI 231 (517)
T ss_pred HHHHHHh-hhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc-ceEEEc
Confidence 3344444 3344555555544 6889999999999999988887777899999965 7999999999888776 799999
Q ss_pred ecccccccCCCCceeEEEeccc
Q 027913 182 QAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 182 ~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.+.++++.+| ++.|+||+--+
T Consensus 232 ~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 232 PGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred cCccccccCc-hhccEEEeccc
Confidence 9999999887 67999997543
No 145
>PLN02476 O-methyltransferase
Probab=98.78 E-value=6.9e-08 Score=77.92 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=65.1
Q ss_pred CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C----CCCcee
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V----SDASVD 196 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~----~~~sfD 196 (217)
++++|||||+|+|+.+..++.. .+.+++.+|.+++..+.|++++++.|+. .+++++.+|+.+. + + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 7899999999999999998863 3567999999999999999999999996 6899999998663 2 2 136899
Q ss_pred EEEecc
Q 027913 197 AVVGTL 202 (217)
Q Consensus 197 ~V~~~~ 202 (217)
+|+.-.
T Consensus 197 ~VFIDa 202 (278)
T PLN02476 197 FAFVDA 202 (278)
T ss_pred EEEECC
Confidence 998643
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.77 E-value=4.3e-08 Score=84.44 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--CCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--~~~sfD~V~~ 200 (217)
.++.+|||+|||+|..+..+++.. ..+++++|+++++++.++++++..|+. .++.+..+|....+. +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEE
Confidence 478899999999999998888633 468999999999999999999998874 344557777765543 5678999985
Q ss_pred ------cccccccCC
Q 027913 201 ------TLVLCSVKD 209 (217)
Q Consensus 201 ------~~~l~~~~d 209 (217)
..++++.++
T Consensus 316 DaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 316 DAPCSATGVIRRHPD 330 (426)
T ss_pred cCCCCCCcccccCcc
Confidence 346666665
No 147
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=3.8e-08 Score=70.62 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=55.7
Q ss_pred CCCeEEEECCcCCc-chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEecc
Q 027913 125 KAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~ 202 (217)
++.++||||||.|. .+..|+ ..|.+|+++|+++..++.+++. .+.++++|+.+.++. -..+|+|++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 56789999999996 777776 5688999999999998888765 347999998776532 35689999865
Q ss_pred ccc
Q 027913 203 VLC 205 (217)
Q Consensus 203 ~l~ 205 (217)
--.
T Consensus 86 pp~ 88 (134)
T PRK04148 86 PPR 88 (134)
T ss_pred CCH
Confidence 433
No 148
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=2.6e-08 Score=78.34 Aligned_cols=83 Identities=20% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHH-HHHHHHHcCCCCCCe-EEEeccccc-----ccCCCCcee
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-AQTAAVAAGLPLTNF-KFLQAVGEA-----IPVSDASVD 196 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~v-~~~~~d~~~-----l~~~~~sfD 196 (217)
.+++++||+|||+|.++..+++....+|+++|++++|+.. .++. .++ .+...|++. ++..-..+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCceeee
Confidence 3778999999999999999987655689999999988876 2221 121 122333332 222224789
Q ss_pred EEEecccccccCChhhhhc
Q 027913 197 AVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 197 ~V~~~~~l~~~~d~~~~L~ 215 (217)
+++++..+ -+++...+|+
T Consensus 146 vsfiS~~~-~l~~i~~~l~ 163 (228)
T TIGR00478 146 VSFISLIS-ILPELDLLLN 163 (228)
T ss_pred EEEeehHh-HHHHHHHHhC
Confidence 88887665 3556655554
No 149
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.74 E-value=6.7e-08 Score=73.51 Aligned_cols=80 Identities=28% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCC---------eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDV---------QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~---------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
.++..|||--||+|.++...+. .... +++|.|+++.+++.+++++...++. ..+.+.+.|+..+++.++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhcccccC
Confidence 4678999999999999866543 2222 3899999999999999999999886 679999999999997788
Q ss_pred ceeEEEecccc
Q 027913 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~V~~~~~l 204 (217)
++|+|++.--+
T Consensus 106 ~~d~IvtnPPy 116 (179)
T PF01170_consen 106 SVDAIVTNPPY 116 (179)
T ss_dssp BSCEEEEE--S
T ss_pred CCCEEEECcch
Confidence 99999986533
No 150
>PLN02366 spermidine synthase
Probab=98.74 E-value=1e-07 Score=78.40 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=63.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc--CCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP--VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~--~~~~sfD~V 198 (217)
..+++||+||||.|..++.+++.+. .+++.+|+++.+++.+++.+... ++..++++++.+|+...- .+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4688999999999999999987654 58999999999999999987543 233368999999976542 235689999
Q ss_pred Eecc
Q 027913 199 VGTL 202 (217)
Q Consensus 199 ~~~~ 202 (217)
++-.
T Consensus 170 i~D~ 173 (308)
T PLN02366 170 IVDS 173 (308)
T ss_pred EEcC
Confidence 9854
No 151
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.74 E-value=4.3e-08 Score=76.78 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=67.0
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH-cC---------CCCCCeEEEeccc
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AG---------LPLTNFKFLQAVG 185 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~---------~~~~~v~~~~~d~ 185 (217)
.+++.+. .++.+||..|||.|.-+..|++ .|.+|+|+|+|+..++.+.+.... .. ....+++++++|+
T Consensus 28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf 106 (218)
T PF05724_consen 28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF 106 (218)
T ss_dssp HHHHHHTTSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence 3444443 4667999999999999999985 578999999999999998543221 10 0124689999999
Q ss_pred ccccCCC-CceeEEEecccccccCC
Q 027913 186 EAIPVSD-ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 186 ~~l~~~~-~sfD~V~~~~~l~~~~d 209 (217)
-.++-.. ++||+|+-...|+-++.
T Consensus 107 F~l~~~~~g~fD~iyDr~~l~Alpp 131 (218)
T PF05724_consen 107 FELPPEDVGKFDLIYDRTFLCALPP 131 (218)
T ss_dssp TTGGGSCHHSEEEEEECSSTTTS-G
T ss_pred ccCChhhcCCceEEEEecccccCCH
Confidence 8886433 58999999999998863
No 152
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.73 E-value=4.8e-08 Score=74.90 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA 193 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~ 193 (217)
.++.+|||||||+|.++..+++. ...+++++|+++.+ .. .++.++++|+.+.+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 47889999999999998887753 34579999999864 11 36788989987642 4567
Q ss_pred ceeEEEeccc
Q 027913 194 SVDAVVGTLV 203 (217)
Q Consensus 194 sfD~V~~~~~ 203 (217)
+||+|++...
T Consensus 98 ~~D~V~~~~~ 107 (188)
T TIGR00438 98 KVDVVMSDAA 107 (188)
T ss_pred CccEEEcCCC
Confidence 8999998654
No 153
>PLN02672 methionine S-methyltransferase
Probab=98.72 E-value=3.9e-08 Score=91.92 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCC--------------CCCeEEEeccccccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP--------------LTNFKFLQAVGEAIP 189 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~~~v~~~~~d~~~l~ 189 (217)
++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++. ..+++|+++|+....
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 3568999999999999998863 4579999999999999999999875431 137999999987643
Q ss_pred CC-CCceeEEEecc
Q 027913 190 VS-DASVDAVVGTL 202 (217)
Q Consensus 190 ~~-~~sfD~V~~~~ 202 (217)
.. ...||+||++-
T Consensus 198 ~~~~~~fDlIVSNP 211 (1082)
T PLN02672 198 RDNNIELDRIVGCI 211 (1082)
T ss_pred cccCCceEEEEECC
Confidence 11 23799999963
No 154
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=74.20 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhc----CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913 112 AGYKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 112 ~~~~~~i~~~~~----~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 186 (217)
.++++.+++.+. ..+..|||+|||+|..+..++.. +...++++|.|+.++..|.+++...++. +.+.++.-+++
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccc
Confidence 345555555554 35668999999999998888763 4568999999999999999999988886 67777766554
Q ss_pred c-----ccCCCCceeEEEeccc
Q 027913 187 A-----IPVSDASVDAVVGTLV 203 (217)
Q Consensus 187 ~-----l~~~~~sfD~V~~~~~ 203 (217)
. .+...+.+|+++++--
T Consensus 210 ~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred cccccccccccCceeEEecCCC
Confidence 3 2355689999998753
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=74.05 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEe-cccccc
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI 188 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~-~d~~~l 188 (217)
..+...++... .+++|||||.+.|+.+..++.. + ..+++.+|.++++.+.|++++++.|+. ++++.+. +|..+.
T Consensus 48 g~~L~~L~~~~--~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLARLS--GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHHHhc--CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHH
Confidence 34444444444 8899999999999999999863 2 468999999999999999999999997 5688888 476544
Q ss_pred -c-CCCCceeEEEec
Q 027913 189 -P-VSDASVDAVVGT 201 (217)
Q Consensus 189 -~-~~~~sfD~V~~~ 201 (217)
. ...++||+|+.=
T Consensus 125 l~~~~~~~fDliFID 139 (219)
T COG4122 125 LSRLLDGSFDLVFID 139 (219)
T ss_pred HHhccCCCccEEEEe
Confidence 2 346899999863
No 156
>PTZ00146 fibrillarin; Provisional
Probab=98.71 E-value=4.9e-08 Score=78.98 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~sfD~V 198 (217)
.++.+|||+|||+|.++..+++.. ...|+++|+++.|++...+.+... .|+.++..|+... ....++||+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEE
Confidence 477899999999999999998743 358999999998665555544332 4789999998642 2233589999
Q ss_pred Eeccc
Q 027913 199 VGTLV 203 (217)
Q Consensus 199 ~~~~~ 203 (217)
++...
T Consensus 207 ~~Dva 211 (293)
T PTZ00146 207 FADVA 211 (293)
T ss_pred EEeCC
Confidence 98764
No 157
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.70 E-value=4e-08 Score=79.31 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=70.9
Q ss_pred HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCC----CeEEEeccccc-----
Q 027913 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEA----- 187 (217)
Q Consensus 117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~d~~~----- 187 (217)
.+++.+..++..++|+|||.|.-+..+-+..-..++|+|+++.-++.|++++++..-... .+.|+++|...
T Consensus 109 ~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d 188 (389)
T KOG1975|consen 109 VLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD 188 (389)
T ss_pred HHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence 345555578889999999999888887766667899999999999999999876432211 36889998743
Q ss_pred -ccCCCCceeEEEeccccccc
Q 027913 188 -IPVSDASVDAVVGTLVLCSV 207 (217)
Q Consensus 188 -l~~~~~sfD~V~~~~~l~~~ 207 (217)
+++++.+||+|-|-++||+-
T Consensus 189 ~~e~~dp~fDivScQF~~HYa 209 (389)
T KOG1975|consen 189 LLEFKDPRFDIVSCQFAFHYA 209 (389)
T ss_pred hccCCCCCcceeeeeeeEeee
Confidence 34456669999999999975
No 158
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.69 E-value=6.4e-08 Score=78.82 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=70.5
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CC
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VS 191 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~ 191 (217)
.+++.+. .++..+||.+||.|.++..+++.. ...|+|+|.++++++.+++++.+ . .++.++.+|+.++. .+
T Consensus 10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHH
Confidence 3455554 467899999999999999999753 47899999999999999998855 2 68999999998874 22
Q ss_pred CC--ceeEEEecccc--cccCChhh
Q 027913 192 DA--SVDAVVGTLVL--CSVKDVDM 212 (217)
Q Consensus 192 ~~--sfD~V~~~~~l--~~~~d~~~ 212 (217)
++ ++|.|+.-... +.+.++++
T Consensus 86 ~~~~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 86 EGLGKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred cCCCccCEEEECCCccccccCCCcC
Confidence 22 79999986643 34455544
No 159
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.69 E-value=2.3e-07 Score=73.84 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=62.1
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
....+|||||+|.|.++..+++ .++.+++..|+ |++++.+++ . ++++++.+|+. -++|. +|+|+..+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f-~~~P~--~D~~~l~~ 166 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFF-DPLPV--ADVYLLRH 166 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----c---cccccccccHH-hhhcc--ccceeeeh
Confidence 4567899999999999999886 78889999999 788888888 1 79999999997 56665 99999999
Q ss_pred cccccCChh
Q 027913 203 VLCSVKDVD 211 (217)
Q Consensus 203 ~l~~~~d~~ 211 (217)
+||+++|.+
T Consensus 167 vLh~~~d~~ 175 (241)
T PF00891_consen 167 VLHDWSDED 175 (241)
T ss_dssp SGGGS-HHH
T ss_pred hhhhcchHH
Confidence 999998754
No 160
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=1.7e-07 Score=71.97 Aligned_cols=75 Identities=7% Similarity=-0.008 Sum_probs=61.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C-CCC-ceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-SDA-SVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~-~~~-sfD~V~~ 200 (217)
.+.+|||++||+|.++..++......|+++|.++.+++.+++++...++. .+++++.+|+... . + ... .||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 67899999999999999988765568999999999999999999888874 4789999999553 2 2 223 3677765
No 161
>PRK03612 spermidine synthase; Provisional
Probab=98.69 E-value=4.9e-08 Score=85.96 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=63.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHH--HHH---cCCCCCCeEEEecccccc-cCCCCcee
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA--AVA---AGLPLTNFKFLQAVGEAI-PVSDASVD 196 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~---~~~~~~~v~~~~~d~~~l-~~~~~sfD 196 (217)
+++++|||||||+|..++.+++.+. .+++++|+++++++.++++ +.+ ..+..++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3678999999999999999887655 7999999999999999983 222 122235899999999874 23347899
Q ss_pred EEEecccc
Q 027913 197 AVVGTLVL 204 (217)
Q Consensus 197 ~V~~~~~l 204 (217)
+|++....
T Consensus 376 vIi~D~~~ 383 (521)
T PRK03612 376 VIIVDLPD 383 (521)
T ss_pred EEEEeCCC
Confidence 99987543
No 162
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.69 E-value=2.7e-07 Score=73.33 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=64.5
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-- 191 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-- 191 (217)
.|+..+. .++.+|||.|.|+|.++..+++ .+..+|+..|..++.++.|+++++..++. .++++...|+..-.+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--STT
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceeccccccc
Confidence 3455555 6999999999999999999986 56679999999999999999999999986 7999999999754442
Q ss_pred -CCceeEEEe
Q 027913 192 -DASVDAVVG 200 (217)
Q Consensus 192 -~~sfD~V~~ 200 (217)
+..+|.|+.
T Consensus 110 ~~~~~DavfL 119 (247)
T PF08704_consen 110 LESDFDAVFL 119 (247)
T ss_dssp -TTSEEEEEE
T ss_pred ccCcccEEEE
Confidence 367999875
No 163
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.68 E-value=1.8e-07 Score=72.15 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=61.8
Q ss_pred HHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
++.+.. .++..|||+-||-|.++..+++ ..+..|+++|++|..++..+++++..++. .++..+.+|...+.. .+.|
T Consensus 94 Ri~~~v-~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 94 RIANLV-KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp HHHTC---TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-TTEEEEES-GGG----TT-E
T ss_pred HHHhcC-CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC-cccc
Confidence 344443 3789999999999999999986 56678999999999999999999999987 789999999998864 7899
Q ss_pred eEEEeccc
Q 027913 196 DAVVGTLV 203 (217)
Q Consensus 196 D~V~~~~~ 203 (217)
|.|++..-
T Consensus 171 drvim~lp 178 (200)
T PF02475_consen 171 DRVIMNLP 178 (200)
T ss_dssp EEEEE--T
T ss_pred CEEEECCh
Confidence 99998653
No 164
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.68 E-value=8.6e-08 Score=80.51 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
+.+|||++||+|.++..+++. ...|+|+|+++++++.|++++...++ .+++|+.+|+.++
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~--~~v~~~~~d~~~~ 257 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI--DNVQIIRMSAEEF 257 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEEcCHHHH
Confidence 457999999999999988854 35899999999999999999998887 5899999999774
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.68 E-value=9.9e-08 Score=80.43 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=53.0
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
+.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++...++ .+++|+.+|+.+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--~~v~~~~~d~~~~ 266 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--DNVQIIRMSAEEF 266 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEECCHHHH
Confidence 357999999999999988754 45899999999999999999988887 5899999999774
No 166
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-07 Score=73.71 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=70.1
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
.|+..+. .++.+|||.|.|+|.++.+|+. .+..+|+..|+-+++++.|+++++..++. +++++..+|+.+.-+++
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEecccccccccc-
Confidence 4555565 7999999999999999999985 45568999999999999999999998885 45999999998876554
Q ss_pred ceeEEEe
Q 027913 194 SVDAVVG 200 (217)
Q Consensus 194 sfD~V~~ 200 (217)
.||+|+.
T Consensus 163 ~vDav~L 169 (256)
T COG2519 163 DVDAVFL 169 (256)
T ss_pred ccCEEEE
Confidence 8999975
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.64 E-value=8e-08 Score=72.70 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccc-c--c-CCCCcee
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEA-I--P-VSDASVD 196 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~-l--~-~~~~sfD 196 (217)
..+.+|||||||+|..+..++.. ...+|+..|.++ .++..+.++...+ .. .++.+...|..+ . . +...+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~-~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD-GRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc-ccccCcEEEecCcccccccccccCC
Confidence 48899999999999888888765 577999999999 8999999987755 22 577888777644 1 1 3456899
Q ss_pred EEEecccccccCChh
Q 027913 197 AVVGTLVLCSVKDVD 211 (217)
Q Consensus 197 ~V~~~~~l~~~~d~~ 211 (217)
+|+...+++.-...+
T Consensus 122 ~IlasDv~Y~~~~~~ 136 (173)
T PF10294_consen 122 VILASDVLYDEELFE 136 (173)
T ss_dssp EEEEES--S-GGGHH
T ss_pred EEEEecccchHHHHH
Confidence 999999998754443
No 168
>PRK01581 speE spermidine synthase; Validated
Probab=98.63 E-value=2e-07 Score=77.58 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=61.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHH--H---HHcCCCCCCeEEEecccccc-cCCCCcee
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--A---VAAGLPLTNFKFLQAVGEAI-PVSDASVD 196 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~---~~~~~~~~~v~~~~~d~~~l-~~~~~sfD 196 (217)
..+++||+||||+|..++.+++.+ ..++++||++++|++.|++. + .+..+..++++++.+|+... .-..+.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 467899999999999988888754 46899999999999999962 1 11223236999999999874 34456899
Q ss_pred EEEecc
Q 027913 197 AVVGTL 202 (217)
Q Consensus 197 ~V~~~~ 202 (217)
+|++-.
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 999863
No 169
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.63 E-value=1.6e-07 Score=74.19 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=70.8
Q ss_pred HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913 113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~ 191 (217)
....+|++... .++..|||||.|||.++..+. +.+.+|+++|+.+.|+....++....... .+.+++.+|+...+++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccCCCc
Confidence 45555666665 688999999999999999998 66789999999999999999998655443 6889999999888765
Q ss_pred CCceeEEEecc
Q 027913 192 DASVDAVVGTL 202 (217)
Q Consensus 192 ~~sfD~V~~~~ 202 (217)
.||.+|++.
T Consensus 123 --~fd~cVsNl 131 (315)
T KOG0820|consen 123 --RFDGCVSNL 131 (315)
T ss_pred --ccceeeccC
Confidence 589988743
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=2e-07 Score=74.21 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c
Q 027913 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P 189 (217)
Q Consensus 113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~ 189 (217)
.....++... .+++|||||+++|+.+..++.. .+.+++.+|.+++..+.|++.+...|+. .+++++.+|+.+. +
T Consensus 69 ~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 69 QFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH
Confidence 3333344444 7889999999999999988863 3568999999999999999999999986 7999999998664 2
Q ss_pred -C-C----CCceeEEEec
Q 027913 190 -V-S----DASVDAVVGT 201 (217)
Q Consensus 190 -~-~----~~sfD~V~~~ 201 (217)
+ . .++||+|+.-
T Consensus 146 ~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred HHHhccccCCcccEEEec
Confidence 1 1 3689999863
No 171
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2e-07 Score=74.23 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=68.3
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
...+++... .++..|||||+|.|.++..+++ .+..|+++|+++.++...++..... .+++++.+|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~~~----~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLE-RAARVTAIEIDRRLAEVLKERFAPY----DNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh-hcCeEEEEEeCHHHHHHHHHhcccc----cceEEEeCchhcCcchhh
Confidence 445566555 4578999999999999999984 4567999999999999999987522 689999999999987753
Q ss_pred -ceeEEEecccccccC
Q 027913 194 -SVDAVVGTLVLCSVK 208 (217)
Q Consensus 194 -sfD~V~~~~~l~~~~ 208 (217)
.++.|+++ ..+++.
T Consensus 94 ~~~~~vVaN-lPY~Is 108 (259)
T COG0030 94 AQPYKVVAN-LPYNIS 108 (259)
T ss_pred cCCCEEEEc-CCCccc
Confidence 56777754 344443
No 172
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=74.38 Aligned_cols=79 Identities=24% Similarity=0.245 Sum_probs=68.4
Q ss_pred CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL 202 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~ 202 (217)
..+||||||.|.++..+|+ .+...++|||+....+..+.+++.+.++ .|+.+++.|+..+- +++++.|-|...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 5899999999999999996 7888999999999999999999999998 49999999998763 4556999998876
Q ss_pred ccccc
Q 027913 203 VLCSV 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
-=.|.
T Consensus 128 PDPWp 132 (227)
T COG0220 128 PDPWP 132 (227)
T ss_pred CCCCC
Confidence 54443
No 173
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.3e-07 Score=78.57 Aligned_cols=73 Identities=26% Similarity=0.274 Sum_probs=64.6
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC---CCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~sfD~V~~ 200 (217)
++.+|||+=||.|.++..++ ....+|+|+|+++++++.|+++++..++ .|+.|+.++++++.. ....+|+|+.
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i--~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI--DNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 67899999999999999998 5667999999999999999999999998 579999999998852 2357899985
No 174
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.61 E-value=4.6e-07 Score=76.08 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
+...+++.+...+..|||+-||.|.++..++ ....+|+|||+++++++.|++++...++ .|++|+.++++++
T Consensus 185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT-TTEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHC
T ss_pred HHHHHHHHhhcCCCcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccch
Confidence 3333444444334489999999999999998 5567899999999999999999999998 6999999887654
No 175
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.57 E-value=4.2e-07 Score=73.66 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEecccccc-cCCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l-~~~~~sfD~V~~ 200 (217)
.+++||+||||+|..+..+++.. ..+++++|+++++++.+++.+...+ +...+++++.+|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 56699999999999998887654 4689999999999999999875432 2235788888887653 222478999998
Q ss_pred ccc
Q 027913 201 TLV 203 (217)
Q Consensus 201 ~~~ 203 (217)
...
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 554
No 176
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=73.69 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=62.0
Q ss_pred CCeEEEECCcCCcchHhhhh-CC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----ccCCCCceeEE
Q 027913 126 AKKVLEIGIGTGPNLKYYAA-DT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAV 198 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~-~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l~~~~~sfD~V 198 (217)
..+|||||||.|.....+.+ .+ +..+.++|.|+.+++..+++..... .++...+.|+.. -|...+++|+|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceE
Confidence 34899999999999888876 33 3689999999999999998754332 455666666543 24677899999
Q ss_pred EecccccccC
Q 027913 199 VGTLVLCSVK 208 (217)
Q Consensus 199 ~~~~~l~~~~ 208 (217)
+++++|.-++
T Consensus 149 t~IFvLSAi~ 158 (264)
T KOG2361|consen 149 TLIFVLSAIH 158 (264)
T ss_pred EEEEEEeccC
Confidence 9999998875
No 177
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.55 E-value=1.5e-07 Score=69.98 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=54.9
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCc-eeEEEec
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDAS-VDAVVGT 201 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~s-fD~V~~~ 201 (217)
.|||+.||.|..+..+++. ..+|++||+++..++.|+.++.-.|+. ++++|+++|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999954 568999999999999999999999976 79999999998763 22222 8999863
No 178
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.54 E-value=3.7e-07 Score=70.05 Aligned_cols=81 Identities=28% Similarity=0.275 Sum_probs=62.8
Q ss_pred eEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--------CCCceeEE
Q 027913 128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--------SDASVDAV 198 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--------~~~sfD~V 198 (217)
+|||||+|||.++.++++ .+.....-.|+.+..+...+..+.+.+++ .-..-+..|+..-++ ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999997 45667888999999888888888877764 122345666665532 24589999
Q ss_pred EecccccccCC
Q 027913 199 VGTLVLCSVKD 209 (217)
Q Consensus 199 ~~~~~l~~~~d 209 (217)
++.+++|-.+.
T Consensus 107 ~~~N~lHI~p~ 117 (204)
T PF06080_consen 107 FCINMLHISPW 117 (204)
T ss_pred eehhHHHhcCH
Confidence 99999998763
No 179
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.53 E-value=2.2e-07 Score=71.70 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=59.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
...++||.|+|-|+.+..+......+|-.+|+.+.+++.|++.+....- .-.++.+..++++..+.+.||+|++-+++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4578999999999999988756667999999999999999987644221 34678888888885455799999999999
Q ss_pred cccCChh
Q 027913 205 CSVKDVD 211 (217)
Q Consensus 205 ~~~~d~~ 211 (217)
.|++|.+
T Consensus 133 ghLTD~d 139 (218)
T PF05891_consen 133 GHLTDED 139 (218)
T ss_dssp GGS-HHH
T ss_pred ccCCHHH
Confidence 9998754
No 180
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.2e-06 Score=64.02 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.++-+||||||+|..+..+++ .+...+.++|+|+.+++..++.++-.+. ++..++.|+..- +..++.|+++.+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~-l~~~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSG-LRNESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhh-hccCCccEEEEC
Confidence 577899999999999888886 4556899999999999999999888774 678899988665 344899999865
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.48 E-value=4.7e-06 Score=66.88 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 109 AEVAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 109 ~~~~~~~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
..+.+.+.+.+..+. +.+.+||||.||.|........ .+. .++...|.|+..++..++.+++.|+. +-++|.++
T Consensus 117 ~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~ 195 (311)
T PF12147_consen 117 VHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEec
Confidence 334455555555554 5778999999999998777664 333 58999999999999999999999995 44599999
Q ss_pred cccccc-C--CCCceeEEEecccccccCChh
Q 027913 184 VGEAIP-V--SDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 184 d~~~l~-~--~~~sfD~V~~~~~l~~~~d~~ 211 (217)
|+-+.. + -+...++++.+..++.++|-+
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~ 226 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDND 226 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHH
Confidence 986542 1 134579999999999999843
No 182
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.46 E-value=2.3e-07 Score=73.27 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=62.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
...++||||+|.|..+..++ ..-.+|++.|.|+.|..+.+++ |. + +.|..++.-.+.+||+|.|.++|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k----g~-----~--vl~~~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK----GF-----T--VLDIDDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC----CC-----e--EEehhhhhccCCceEEEeehhhh
Confidence 45689999999999999997 4456799999999997766653 42 2 33444444345689999999999
Q ss_pred cccCChhhhhcC
Q 027913 205 CSVKDVDMTLQA 216 (217)
Q Consensus 205 ~~~~d~~~~L~e 216 (217)
..-.+|...|++
T Consensus 162 DRc~~P~~LL~~ 173 (265)
T PF05219_consen 162 DRCDRPLTLLRD 173 (265)
T ss_pred hccCCHHHHHHH
Confidence 999999888865
No 183
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.45 E-value=1.4e-06 Score=63.65 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=60.9
Q ss_pred CCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCC-CCeEEEecccccccCCCCceeE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDA 197 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~v~~~~~d~~~l~~~~~sfD~ 197 (217)
.+...|+|+|||.|+++..++. .++.+|++||.++..++.+.++.++.+... .++.+..++....+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4778999999999999999987 678899999999999999999988776221 466777776655432 455677
Q ss_pred EEeccc
Q 027913 198 VVGTLV 203 (217)
Q Consensus 198 V~~~~~ 203 (217)
++..++
T Consensus 103 ~vgLHa 108 (141)
T PF13679_consen 103 LVGLHA 108 (141)
T ss_pred EEEeec
Confidence 775443
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-06 Score=66.89 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcC--------CCCCCeEEEecccccccCCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~~~~~d~~~l~~~~ 192 (217)
.++.++||+|.|+|+++.-++. ..+..++|||.-++.++++++++.+.- +...++.++++|.....-+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 4899999999999999766653 556667999999999999999986543 33457889999999987677
Q ss_pred CceeEEEeccccccc
Q 027913 193 ASVDAVVGTLVLCSV 207 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~ 207 (217)
.+||.|.+-..-.-+
T Consensus 161 a~YDaIhvGAaa~~~ 175 (237)
T KOG1661|consen 161 APYDAIHVGAAASEL 175 (237)
T ss_pred CCcceEEEccCcccc
Confidence 899999987554443
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.43 E-value=5.8e-06 Score=63.01 Aligned_cols=74 Identities=31% Similarity=0.353 Sum_probs=61.0
Q ss_pred CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.+++|||+|.|.-+..++- .+..+++.+|....-+...+....+.++ +|++++...+++ +.....||+|++-.+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--SNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--CCEEEEEeeecc-cccCCCccEEEeehh
Confidence 3899999999988877764 6788999999999999999999999999 699999999999 445689999998654
No 186
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.42 E-value=1.1e-06 Score=64.74 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCcee
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD 196 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD 196 (217)
..++.|||+|.|||-+++.+.+. ....++.+|.|++.+....+.. +.+.++.+|+..+. ..+..||
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~~l~e~~gq~~D 119 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRTTLGEHKGQFFD 119 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHHHHhhcCCCeee
Confidence 47789999999999999999863 3468999999999999998886 45678999987764 5667899
Q ss_pred EEEecccccccC
Q 027913 197 AVVGTLVLCSVK 208 (217)
Q Consensus 197 ~V~~~~~l~~~~ 208 (217)
.|+|..-+-.++
T Consensus 120 ~viS~lPll~~P 131 (194)
T COG3963 120 SVISGLPLLNFP 131 (194)
T ss_pred eEEeccccccCc
Confidence 999988777765
No 187
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.40 E-value=1.2e-06 Score=72.02 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=65.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sfD~V~~ 200 (217)
.++..|||==||||.++.... ..|..++|+|++..|++-|+.+++..++ ....++.. |+..+|+++.+||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccceEEe
Confidence 478899999999999988865 7789999999999999999999999887 46666666 99999999889999986
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.36 E-value=1.2e-06 Score=77.05 Aligned_cols=82 Identities=23% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~ 200 (217)
.....+||||||.|.++..+|. .+...++|+|+...-+..+.++....++ .|+.++..|++.+. ++++++|.|+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 3567899999999999999886 6788999999999999999998888888 69999999886553 77889999998
Q ss_pred ccccccc
Q 027913 201 TLVLCSV 207 (217)
Q Consensus 201 ~~~l~~~ 207 (217)
++-=.|.
T Consensus 424 ~FPDPWp 430 (506)
T PRK01544 424 LFPDPWI 430 (506)
T ss_pred ECCCCCC
Confidence 7765444
No 189
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.35 E-value=1e-06 Score=74.63 Aligned_cols=74 Identities=22% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 126 AKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
+.+|||++||+|..+..++... ...|+++|+++.+++.++++++..++ .++++...|+..+....+.||+|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--ENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 4689999999999999987543 35899999999999999999988887 46789999997753214679999874
No 190
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.32 E-value=3.7e-06 Score=67.85 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=64.3
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD 192 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 192 (217)
..+.+++.+. .++..|||||+|.|.++..+++.. .+++++|+++.+++..++++... ++++++.+|+..+....
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~----~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN----PNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC----SSEEEEES-TTTSCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc----ccceeeecchhccccHH
Confidence 4444555554 478899999999999999998544 89999999999999999876521 68999999999987554
Q ss_pred ---CceeEEEecc
Q 027913 193 ---ASVDAVVGTL 202 (217)
Q Consensus 193 ---~sfD~V~~~~ 202 (217)
+....|+++.
T Consensus 93 ~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 93 LLKNQPLLVVGNL 105 (262)
T ss_dssp HCSSSEEEEEEEE
T ss_pred hhcCCceEEEEEe
Confidence 3455666543
No 191
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.31 E-value=6e-06 Score=67.05 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc-
Q 027913 111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE- 186 (217)
Q Consensus 111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~- 186 (217)
+.....++-.++. ..+.+|||+|+|.|.-+-.+.. ..-.+++++|.|+.|++.++..+...... ....+......
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~ 96 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRD 96 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhcc
Confidence 3333344443433 4778999999999976544443 22357999999999999999987554321 11111111111
Q ss_pred cccCCCCceeEEEecccccccCC
Q 027913 187 AIPVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 187 ~l~~~~~sfD~V~~~~~l~~~~d 209 (217)
..++ ...|+|++.++|-.+++
T Consensus 97 ~~~~--~~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 97 FLPF--PPDDLVIASYVLNELPS 117 (274)
T ss_pred cccC--CCCcEEEEehhhhcCCc
Confidence 1222 23499999999999987
No 192
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=73.38 Aligned_cols=93 Identities=27% Similarity=0.306 Sum_probs=82.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.++..++|+|||-|...++++......++|+|.++..+.++.......++. .+-.++.+|+...|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhhhhcCCCCccccCcEEEEee
Confidence 466789999999999999998777789999999999999999888777775 4556689999999999999999999999
Q ss_pred ccccCChhhhhcCC
Q 027913 204 LCSVKDVDMTLQAP 217 (217)
Q Consensus 204 l~~~~d~~~~L~e~ 217 (217)
.+|.+++..+++|+
T Consensus 188 ~~~~~~~~~~y~Ei 201 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEI 201 (364)
T ss_pred cccCCcHHHHHHHH
Confidence 99999999998874
No 193
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.27 E-value=4.9e-06 Score=63.46 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c---CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P---VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~---~~~~sfD~V~~ 200 (217)
.+.++||+-||+|.++...++....+|+.||.++..++..+++++..+.. .++..+..|+... + .....||+|+.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 88999999999999999888777789999999999999999999988875 4689999986443 2 24689999986
Q ss_pred c
Q 027913 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
-
T Consensus 121 D 121 (183)
T PF03602_consen 121 D 121 (183)
T ss_dssp -
T ss_pred C
Confidence 3
No 194
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=6.5e-06 Score=68.17 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
+.++++... ++.+|||+=+|-|.++..+++.....|+++|+||..++..+++++-+++. ..+..+++|...++..-+.
T Consensus 179 R~Rva~~v~-~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 179 RARVAELVK-EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHHHhhhc-CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhcccc
Confidence 334444443 69999999999999999998655556999999999999999999999986 4599999999998755588
Q ss_pred eeEEEecccc
Q 027913 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~V~~~~~l 204 (217)
+|-|++...-
T Consensus 257 aDrIim~~p~ 266 (341)
T COG2520 257 ADRIIMGLPK 266 (341)
T ss_pred CCEEEeCCCC
Confidence 9999987654
No 195
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=6.9e-07 Score=71.23 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS 194 (217)
Q Consensus 115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s 194 (217)
.+++++... .+..+||+|||.|.++. ..+...++|.|++...+..+++. .......+|+..+|+.+.+
T Consensus 36 v~qfl~~~~-~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s 103 (293)
T KOG1331|consen 36 VRQFLDSQP-TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREES 103 (293)
T ss_pred HHHHHhccC-CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCc
Confidence 344444443 57889999999997553 24666799999999998888864 1226889999999999999
Q ss_pred eeEEEecccccccCCh
Q 027913 195 VDAVVGTLVLCSVKDV 210 (217)
Q Consensus 195 fD~V~~~~~l~~~~d~ 210 (217)
||.+++..++||+...
T Consensus 104 ~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 104 FDAALSIAVIHHLSTR 119 (293)
T ss_pred cccchhhhhhhhhhhH
Confidence 9999999999999754
No 196
>PLN02823 spermine synthase
Probab=98.23 E-value=6.5e-06 Score=68.51 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~~~~~sfD~V~ 199 (217)
..+++||.||+|.|..++.+++.. ..+++.||+++++++.+++.+... ++..++++++.+|+... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 367899999999999999888744 468999999999999999987432 22336899999998775 33457899999
Q ss_pred ec
Q 027913 200 GT 201 (217)
Q Consensus 200 ~~ 201 (217)
+-
T Consensus 182 ~D 183 (336)
T PLN02823 182 GD 183 (336)
T ss_pred ec
Confidence 75
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.20 E-value=2e-06 Score=66.25 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCCCeEEEECCcCCcc----hHhhhh---C-C--CCeEEEecCCHHHHHHHHHHHH--------------H-----c--C
Q 027913 124 GKAKKVLEIGIGTGPN----LKYYAA---D-T--DVQVLGVDPNRKMEKYAQTAAV--------------A-----A--G 172 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~----~~~l~~---~-~--~~~v~gvD~s~~~l~~a~~~~~--------------~-----~--~ 172 (217)
....+|+-+||++|.- +..+.+ . . ..+++|+|+|+.+++.|++-.- + . +
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 3567999999999942 222222 1 2 3589999999999999984320 0 0 0
Q ss_pred ------CCCCCeEEEecccccccCCCCceeEEEecccccccCCh
Q 027913 173 ------LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 173 ------~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~ 210 (217)
+. .+|.|...|+.+.+...+.||+|+|-++|-++.+.
T Consensus 110 ~~v~~~lr-~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~ 152 (196)
T PF01739_consen 110 YRVKPELR-KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE 152 (196)
T ss_dssp TTE-HHHH-TTEEEEE--TT-S------EEEEEE-SSGGGS-HH
T ss_pred eeEChHHc-CceEEEecccCCCCcccCCccEEEecCEEEEeCHH
Confidence 11 46899999998843455789999999999999754
No 198
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.20 E-value=8.6e-06 Score=66.17 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c--CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~sfD~V~~ 200 (217)
.+++|||+=|=||.++.+.+.....+|+.||.|..+++.+++++.-+++...+++|++.|+.+. . -..++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 7889999999999999987766666899999999999999999999998767899999998763 1 13468999997
No 199
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.17 E-value=8.3e-06 Score=68.92 Aligned_cols=76 Identities=20% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~ 200 (217)
++++|||+=|=||.++.+.+.....+||.||.|...++.|+++++-+++...++.|+++|+-++- -...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 59999999999999999988655559999999999999999999999987678999999987652 23358999986
No 200
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=1.4e-05 Score=73.01 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCCeEEEECCcCCcchHhhhh-----CC--------------------------------------CCeEEEecCCHHHH
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-----DT--------------------------------------DVQVLGVDPNRKME 161 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-----~~--------------------------------------~~~v~gvD~s~~~l 161 (217)
++..++|-+||+|.++...+. .+ ...++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 568999999999999866542 01 12699999999999
Q ss_pred HHHHHHHHHcCCCCCCeEEEecccccccCC--CCceeEEEecc
Q 027913 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTL 202 (217)
Q Consensus 162 ~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~sfD~V~~~~ 202 (217)
+.|++++...|+. ..+++.++|+.+++.+ .++||+|+++-
T Consensus 270 ~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 270 QAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred HHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECC
Confidence 9999999999986 5799999999988643 35799999874
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.16 E-value=2.3e-06 Score=65.64 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
..+++.+. ++...|-|+|||.+.++..+. ....|.-.|+-.. +-.++.+|+..+|++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-----------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-----------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------------STTEEES-TTS-S--TT
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC-----------------CCCEEEecCccCcCCCC
Confidence 33444444 345789999999999886653 3467999998643 23488899999999999
Q ss_pred ceeEEEecccccccCChhhhhcC
Q 027913 194 SVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 194 sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
++|++|+..+|... |....|+|
T Consensus 122 svDv~VfcLSLMGT-n~~~fi~E 143 (219)
T PF05148_consen 122 SVDVAVFCLSLMGT-NWPDFIRE 143 (219)
T ss_dssp -EEEEEEES---SS--HHHHHHH
T ss_pred ceeEEEEEhhhhCC-CcHHHHHH
Confidence 99999998888765 44445544
No 202
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.15 E-value=1.8e-05 Score=61.47 Aligned_cols=86 Identities=24% Similarity=0.306 Sum_probs=68.4
Q ss_pred HHHHHHHHhc-----CC-CCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913 114 YKSQLFDNLR-----GK-AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 114 ~~~~i~~~~~-----~~-~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 186 (217)
|.+++++.+. .. +.+++|||+|.|.-+..++ -.+..+++.+|....-+...++...+.++ .|++++.+-++
T Consensus 50 ~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE 127 (215)
T COG0357 50 WQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAE 127 (215)
T ss_pred HHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHh
Confidence 4445555443 12 6899999999998887766 36777899999999999999999999998 68999999999
Q ss_pred cccCCCCc-eeEEEecc
Q 027913 187 AIPVSDAS-VDAVVGTL 202 (217)
Q Consensus 187 ~l~~~~~s-fD~V~~~~ 202 (217)
++.-. .. ||+|++-.
T Consensus 128 ~~~~~-~~~~D~vtsRA 143 (215)
T COG0357 128 EFGQE-KKQYDVVTSRA 143 (215)
T ss_pred hcccc-cccCcEEEeeh
Confidence 98532 23 99999754
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.14 E-value=8.1e-06 Score=63.30 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=55.4
Q ss_pred EEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc-eeEEEeccc
Q 027913 129 VLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS-VDAVVGTLV 203 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s-fD~V~~~~~ 203 (217)
|.||||..|++..++.+. ....++++|+++.-++.|++++...++. .++++..+|.... ++.+. .|+|+...|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~-l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEV-LKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG---GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccc-cCCCCCCCEEEEecC
Confidence 689999999999999864 3457999999999999999999999987 7899999996553 23333 788887654
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.14 E-value=2.6e-06 Score=66.02 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHH-------HHcCCCCCCeEEEecc
Q 027913 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA-------VAAGLPLTNFKFLQAV 184 (217)
Q Consensus 114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~v~~~~~d 184 (217)
....+++.+. .++...+|||||.|......+- ....+.+|||+.+...+.|+... +..|....++++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 3444555555 5788999999999998877664 34456999999999888776543 2334444678899999
Q ss_pred cccccCCC---CceeEEEecccc
Q 027913 185 GEAIPVSD---ASVDAVVGTLVL 204 (217)
Q Consensus 185 ~~~l~~~~---~sfD~V~~~~~l 204 (217)
+.+.++.. ...|+|++++..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC 132 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT
T ss_pred ccccHhHhhhhcCCCEEEEeccc
Confidence 87654211 347899987653
No 205
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=1.5e-05 Score=66.62 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCCCeEEEECCcCCcchHhhhh-C----CC----------------------------C-------eEEEecCCHHHHHH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-D----TD----------------------------V-------QVLGVDPNRKMEKY 163 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~----~~----------------------------~-------~v~gvD~s~~~l~~ 163 (217)
.++..++|--||+|.+....+- . || . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4667999999999999876653 1 11 0 37799999999999
Q ss_pred HHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 164 a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
|+.++...|+. +.++|.++|+..++-+-+.+|+||++-
T Consensus 270 Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 270 AKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 99999999997 789999999999864337899999864
No 206
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=5.4e-06 Score=71.12 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
..++.+||+-||||.+...++ .....|+||+++++.++.|++++...|+ .|.+|+++-++++
T Consensus 382 ~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI--SNATFIVGQAEDL 443 (534)
T ss_pred CCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc--cceeeeecchhhc
Confidence 467899999999999999987 4556899999999999999999999998 6999999966654
No 207
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=1e-05 Score=58.94 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=47.5
Q ss_pred eEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913 128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~ 187 (217)
++||||||.|.++..+++ .+..+++++|+++.+++.+++++...++ .++.++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~--~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL--PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEEeeeeC
Confidence 489999999999988875 3345899999999999999999988776 357777665543
No 208
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.10 E-value=2.2e-05 Score=61.96 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
+++.+|+|||||.-.++..+.. .++..|+|+|++..+++.....+...++ +.++...|...-+ +....|+.+..-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeeeccC-CCCCcchhhHHH
Confidence 3588999999999999887775 4567999999999999999999888885 5677777876654 446799999877
Q ss_pred cccccC
Q 027913 203 VLCSVK 208 (217)
Q Consensus 203 ~l~~~~ 208 (217)
+++.+.
T Consensus 180 ~lp~le 185 (251)
T PF07091_consen 180 TLPCLE 185 (251)
T ss_dssp -HHHHH
T ss_pred HHHHHH
Confidence 777664
No 209
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.06 E-value=1.5e-05 Score=59.93 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
....+.|+|+|+|.++...+ +...+|++|+.+|.-.+.|++++.-.|. .|++++.+|+....| ...|+|+|-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICE 103 (252)
T ss_pred hhhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHH
Confidence 44789999999998887665 4467899999999999999999866776 699999999999887 458888874
No 210
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.03 E-value=4.7e-06 Score=67.80 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCCeEEEECCcCCcc----hHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHH-----------------------cC
Q 027913 125 KAKKVLEIGIGTGPN----LKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVA-----------------------AG 172 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~----~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~ 172 (217)
...+|+-.||++|.- +..+.+. ...+++|+|+|+.+++.|++-.-. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999942 2223221 135899999999999999865200 00
Q ss_pred -------CCCCCeEEEecccccccCC-CCceeEEEecccccccCCh
Q 027913 173 -------LPLTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 173 -------~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~l~~~~d~ 210 (217)
+. ..|.|.+.|+...+++ .+.||+|+|.++|.|+.+.
T Consensus 195 ~~~v~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~ 239 (287)
T PRK10611 195 LVRVRQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT 239 (287)
T ss_pred eEEEChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence 11 4678888998775543 5789999999999999653
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=1.7e-05 Score=60.01 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=68.0
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
-.+++|||+|+|+|......++.....|+..|+.+..+...+-+.+.++. ++.+...|... .+..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEeece
Confidence 47899999999999888777766667899999999999999999888885 67888887655 4578999999998
Q ss_pred ccccCChhh
Q 027913 204 LCSVKDVDM 212 (217)
Q Consensus 204 l~~~~d~~~ 212 (217)
++.-+.-.+
T Consensus 152 fy~~~~a~~ 160 (218)
T COG3897 152 FYNHTEADR 160 (218)
T ss_pred ecCchHHHH
Confidence 876554333
No 212
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.97 E-value=3.4e-05 Score=66.04 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=70.5
Q ss_pred CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccc
Q 027913 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS 206 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~ 206 (217)
.++|-+|||.-.+...+-+.....++-+|+|+..++....+....- ....+...|+..+.|++++||+|+.-..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCcccc
Confidence 4899999999999888877777899999999999988887764221 4678999999999999999999999999998
Q ss_pred cCChhh
Q 027913 207 VKDVDM 212 (217)
Q Consensus 207 ~~d~~~ 212 (217)
+-..+.
T Consensus 127 l~~de~ 132 (482)
T KOG2352|consen 127 LFEDED 132 (482)
T ss_pred ccCCch
Confidence 855443
No 213
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.97 E-value=1.3e-05 Score=63.16 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913 116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA 193 (217)
Q Consensus 116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 193 (217)
..|++.+. .....|-|+|||.+.++. .....|+..|+-.. +-+++.+|+..+|++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC-----------------CCceeeccccCCcCccC
Confidence 34455544 456689999999997654 23357888888533 45789999999999999
Q ss_pred ceeEEEecccccccCChhhhhcC
Q 027913 194 SVDAVVGTLVLCSVKDVDMTLQA 216 (217)
Q Consensus 194 sfD~V~~~~~l~~~~d~~~~L~e 216 (217)
+.|++|+..+|.-- |...+++|
T Consensus 228 svDvaV~CLSLMgt-n~~df~kE 249 (325)
T KOG3045|consen 228 SVDVAVFCLSLMGT-NLADFIKE 249 (325)
T ss_pred cccEEEeeHhhhcc-cHHHHHHH
Confidence 99999988777643 45555554
No 214
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.96 E-value=3.6e-05 Score=61.94 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCeEEEECCcCCcc----hHhhhhC------CCCeEEEecCCHHHHHHHHHHHHH-----cCCC---------------
Q 027913 125 KAKKVLEIGIGTGPN----LKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA-----AGLP--------------- 174 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~----~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~--------------- 174 (217)
..-+|+-+||++|.- +..+.+. ...+++|.|++..+++.|+.-.-. .+++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 367999999999942 2223232 246999999999999999843211 1110
Q ss_pred -------CCCeEEEecccccccCCCCceeEEEecccccccCChh
Q 027913 175 -------LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 175 -------~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~ 211 (217)
...|.|...|+..-++..+.||+|+|-+||-++..+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~ 219 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET 219 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH
Confidence 1357788888776654457899999999999997653
No 215
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=8.8e-05 Score=59.00 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--
Q 027913 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-- 190 (217)
Q Consensus 116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-- 190 (217)
..|+..+. .|+.+|||-|.|+|.++.++++ .+-.+++-.|.-+.-.+.|.+-+++.++. +++++.+-|+...-|
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCccc
Confidence 34555555 6999999999999999999987 45568999999999999999999999987 899999999987653
Q ss_pred CCCceeEEEe
Q 027913 191 SDASVDAVVG 200 (217)
Q Consensus 191 ~~~sfD~V~~ 200 (217)
.+..+|.|+.
T Consensus 174 ks~~aDaVFL 183 (314)
T KOG2915|consen 174 KSLKADAVFL 183 (314)
T ss_pred cccccceEEE
Confidence 4578999875
No 216
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=2.3e-05 Score=61.30 Aligned_cols=46 Identities=26% Similarity=0.269 Sum_probs=40.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~ 169 (217)
..++.+|||||..|.++..+++..+ ..+.|+||.+..++.|++.++
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 4788999999999999999998544 579999999999999998874
No 217
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.95 E-value=8.7e-05 Score=61.36 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
....|...+ +++..++|+|||.|.-+..+.+ .....++++|+|.++++.+.+++....++.-.+.-+++|..+.
T Consensus 66 ~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 66 HSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 333444444 3566899999999988766554 2246799999999999999999974444322444588888653
Q ss_pred ----cC--CCCceeEEEecc-cccccCChh
Q 027913 189 ----PV--SDASVDAVVGTL-VLCSVKDVD 211 (217)
Q Consensus 189 ----~~--~~~sfD~V~~~~-~l~~~~d~~ 211 (217)
+- ......+|+... ++.+++..+
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~e 174 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPE 174 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHH
Confidence 21 123456666654 888886544
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=7.1e-05 Score=56.75 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=64.4
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCC-CceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD-ASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~-~sfD~V~~~ 201 (217)
.+.++||+=+|+|.++...+......++.||.+...+...+++++..++. .+++++..|+... + ... +.||+|+.=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 78999999999999999988787889999999999999999999888865 6889999998754 1 222 259999863
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=3.6e-05 Score=63.59 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=55.6
Q ss_pred CCCCeEEEECCcCCcchHhhhh--------CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--CC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DA 193 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~ 193 (217)
.++.+|||-+||+|.++..+.+ ....+++|+|+++.++..++-++.-.+....+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3566899999999999877664 2567899999999999999987755554334456888886555432 47
Q ss_pred ceeEEEeccccc
Q 027913 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~V~~~~~l~ 205 (217)
.||+|+++--+-
T Consensus 125 ~~D~ii~NPPf~ 136 (311)
T PF02384_consen 125 KFDVIIGNPPFG 136 (311)
T ss_dssp -EEEEEEE--CT
T ss_pred ccccccCCCCcc
Confidence 899999975443
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.90 E-value=0.00011 Score=58.80 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccccc-CCCC-ceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAIP-VSDA-SVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l~-~~~~-sfD~V 198 (217)
..+++||=||.|.|..++.+.+.+ ..+++.||+++.+++.+++.+.... +..++++++..|....- -... +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 478999999999999999998765 4689999999999999999875432 22368999999997752 2223 89999
Q ss_pred Ee
Q 027913 199 VG 200 (217)
Q Consensus 199 ~~ 200 (217)
+.
T Consensus 155 i~ 156 (246)
T PF01564_consen 155 IV 156 (246)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=7.5e-05 Score=60.66 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=62.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccccc-CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l~-~~~~sfD~V~ 199 (217)
+.+++||-||.|.|..++.+.+.. -.+++.||+++..++.+++.+.... ...++++.+..|..++- -...+||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 344799999999999999999855 4689999999999999999986543 11268999999987763 2224899998
Q ss_pred ec
Q 027913 200 GT 201 (217)
Q Consensus 200 ~~ 201 (217)
+-
T Consensus 155 ~D 156 (282)
T COG0421 155 VD 156 (282)
T ss_pred Ec
Confidence 63
No 222
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.86 E-value=7e-05 Score=65.09 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~ 199 (217)
.++.+|||+++|.|.-+..++... ...++++|+++..++..++++...|+ .++.+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCeEE
Confidence 488999999999999888887632 35899999999999999999999998 58899999988763 3346799999
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.86 E-value=3.8e-05 Score=64.90 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEe
Q 027913 126 AKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVG 200 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~ 200 (217)
+.+|||+.||+|..+..++.+ ....|+++|+++..++.++++++..++ .+++++..|+..+-. ....||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--ENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 368999999999999998865 336899999999999999999988876 478999999987632 2357999976
No 224
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00014 Score=56.21 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=64.8
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.+.++.||||-.+++..++.+ .+...+++.|+++.-++.|.+++.+.++. .+++...+|....--.+..+|+|+...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccccCccCCcCEEEEeCC
Confidence 455699999999999999986 56678999999999999999999999887 7899999998433233448999987664
No 225
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.83 E-value=8.3e-06 Score=69.99 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred CeEEEECCcCCcchHhhhhCCCCeEEEecCCH-----HHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR-----KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
..+||||||.|.++.+|.+ .+ |+.+.+.+ .+++.|. +.|++ ..+-..-...|||++++||+|.|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~-r~--V~t~s~a~~d~~~~qvqfal----eRGvp---a~~~~~~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLE-RN--VTTMSFAPNDEHEAQVQFAL----ERGVP---AMIGVLGSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred EEEEeccceeehhHHHHhh-CC--ceEEEcccccCCchhhhhhh----hcCcc---hhhhhhccccccCCccchhhhhcc
Confidence 4699999999999999983 33 44444444 3444444 44653 112222347899999999999998
Q ss_pred cccccc
Q 027913 202 LVLCSV 207 (217)
Q Consensus 202 ~~l~~~ 207 (217)
.++-..
T Consensus 189 rc~i~W 194 (506)
T PF03141_consen 189 RCLIPW 194 (506)
T ss_pred cccccc
Confidence 766543
No 226
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.77 E-value=4.4e-05 Score=58.90 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=60.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~ 200 (217)
....|+|.-||.|..+..++ ..+..|++||+++.-+.-|+.+++-.|++ ++++|+++|+.++- +....+|+|..
T Consensus 94 ~~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 56789999999999888887 45667999999999999999999999998 69999999997752 33333556554
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.77 E-value=0.00022 Score=58.46 Aligned_cols=93 Identities=11% Similarity=0.153 Sum_probs=70.7
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----- 189 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----- 189 (217)
.+++.+. .++..++|.-+|.|.++..+++. +...|+|+|.++.+++.+++++...+ .++.++.++...+.
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHh
Confidence 3445454 47789999999999999999864 34789999999999999999887653 58999999988764
Q ss_pred CCCCceeEEEecccc--cccCChhh
Q 027913 190 VSDASVDAVVGTLVL--CSVKDVDM 212 (217)
Q Consensus 190 ~~~~sfD~V~~~~~l--~~~~d~~~ 212 (217)
....++|.|+.-..+ +.+.++++
T Consensus 88 ~~~~~vDgIl~DLGvSS~Qld~~~R 112 (305)
T TIGR00006 88 LLVTKIDGILVDLGVSSPQLDDPER 112 (305)
T ss_pred cCCCcccEEEEeccCCHhhcCCCCC
Confidence 233579999986543 34445443
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.74 E-value=0.00014 Score=52.43 Aligned_cols=76 Identities=38% Similarity=0.478 Sum_probs=51.5
Q ss_pred EEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc--ccCCC-CceeEEEeccc
Q 027913 129 VLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSD-ASVDAVVGTLV 203 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~--l~~~~-~sfD~V~~~~~ 203 (217)
++|+|||+|... .+.. ..+..++|+|+++.++..++........ ..+.+...|... +++.. ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--GLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--CceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999854 2222 2224799999999999985555433221 116888888876 77776 48999944444
Q ss_pred cccc
Q 027913 204 LCSV 207 (217)
Q Consensus 204 l~~~ 207 (217)
+++.
T Consensus 129 ~~~~ 132 (257)
T COG0500 129 LHLL 132 (257)
T ss_pred hhcC
Confidence 4443
No 229
>PRK00536 speE spermidine synthase; Provisional
Probab=97.73 E-value=0.00029 Score=56.63 Aligned_cols=74 Identities=12% Similarity=-0.108 Sum_probs=57.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
+.+++||=||.|.|..++.+++.+. +|+-||+++++++.+++.+... ++..++++++.. +.+ ...++||+|+.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 5789999999999999999998764 9999999999999999855332 344467777752 211 123689999964
No 230
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00013 Score=52.95 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=74.2
Q ss_pred HHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC
Q 027913 97 ASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL 175 (217)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 175 (217)
+..|.+.--.|-....+.+..++..+. .+..+.+|+|.|.|......++..-...+|+++++=.+.+++-..-..|+.
T Consensus 43 aPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~- 121 (199)
T KOG4058|consen 43 APAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA- 121 (199)
T ss_pred hHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-
Confidence 333333333444445556666666666 567899999999999998887655568999999999999999888777776
Q ss_pred CCeEEEecccccccCCCCceeEEE
Q 027913 176 TNFKFLQAVGEAIPVSDASVDAVV 199 (217)
Q Consensus 176 ~~v~~~~~d~~~l~~~~~sfD~V~ 199 (217)
+..+|..-|+-+..+.+-.+-+|+
T Consensus 122 k~trf~RkdlwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 122 KSTRFRRKDLWKVDLRDYRNVVIF 145 (199)
T ss_pred cchhhhhhhhhhccccccceEEEe
Confidence 678888888887776554444443
No 231
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.71 E-value=0.00026 Score=57.79 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=48.3
Q ss_pred CCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccc-c----cCCCCceeEE
Q 027913 126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-I----PVSDASVDAV 198 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~-l----~~~~~sfD~V 198 (217)
..++||||+|..-.-..|. +..+++++|.|+++..++.|++++... ++. .+|+++...-.. + ..+++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceeeEE
Confidence 4589999999874422222 345899999999999999999999988 776 788887664322 1 1234689999
Q ss_pred EecccccccC
Q 027913 199 VGTLVLCSVK 208 (217)
Q Consensus 199 ~~~~~l~~~~ 208 (217)
+|+--|+.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9987766543
No 232
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.69 E-value=6.6e-05 Score=58.01 Aligned_cols=68 Identities=24% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC---CCCceeEEEecc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~sfD~V~~~~ 202 (217)
..++|||||=+..+...- .....|+.||+++. .-.+.+.|+.+.|+ +++.||+|.++.
T Consensus 52 ~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred cceEEeecccCCCCcccc--cCceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 479999999866554332 33457999999875 22477888888776 467999999999
Q ss_pred cccccCChhh
Q 027913 203 VLCSVKDVDM 212 (217)
Q Consensus 203 ~l~~~~d~~~ 212 (217)
+|.++|++.+
T Consensus 113 VLNfVP~p~~ 122 (219)
T PF11968_consen 113 VLNFVPDPKQ 122 (219)
T ss_pred EEeeCCCHHH
Confidence 9999999865
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.66 E-value=0.00011 Score=60.77 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
.++.++|||||++|.++..+++. +..|++||..+ |-.. +... ++|.....|.....-+.+.+|.|+|=.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~~~----~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LMDT----GQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hhCC----CCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 48899999999999999999854 56999999554 2222 2111 5788888887665322578999987443
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.66 E-value=0.00065 Score=52.90 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI- 188 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l- 188 (217)
.+....+++.+ .+++.||||.=||+.+..+|. ..+..|+++|++++..+.+.+..+..|+. .++.+++++..+.
T Consensus 62 g~fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esL 138 (237)
T KOG1663|consen 62 GQFLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESL 138 (237)
T ss_pred HHHHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhH
Confidence 34444555555 889999999999998877775 34678999999999999999999999987 7999999987542
Q ss_pred c-----CCCCceeEEEe
Q 027913 189 P-----VSDASVDAVVG 200 (217)
Q Consensus 189 ~-----~~~~sfD~V~~ 200 (217)
+ .+.++||+++.
T Consensus 139 d~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFV 155 (237)
T ss_pred HHHHhcCCCCceeEEEE
Confidence 1 45689999984
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00034 Score=53.85 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=55.0
Q ss_pred HHHHHHHHhc--CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 114 YKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 114 ~~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
...+|.+++. .++..|+|||+..|.++..+++. .+..|+|+|+.|- .. ..+|.++++|+..-+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~-~~~V~~iq~d~~~~~ 98 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KP-IPGVIFLQGDITDED 98 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------cc-CCCceEEeeeccCcc
Confidence 3444555554 67899999999999999988873 3345999999764 11 156899999997643
Q ss_pred --------CCCCceeEEEecc
Q 027913 190 --------VSDASVDAVVGTL 202 (217)
Q Consensus 190 --------~~~~sfD~V~~~~ 202 (217)
+....+|+|++=.
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred HHHHHHHHcCCCCcceEEecC
Confidence 4445679998644
No 236
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.63 E-value=1.8e-05 Score=61.56 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~ 200 (217)
..+.+|||...|-|+.+...++.....|+.++.+++.++.|+-+--..++...+++.+.+|..++ .|+|.+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 36899999999999999888755555999999999999999876544444435789999998776 488999999973
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.40 E-value=0.00033 Score=62.15 Aligned_cols=80 Identities=11% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCCeEEEECCcCCcchHhhhhCC---------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADT---------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V 190 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~ 190 (217)
...+|||.|||+|.++..++... ...++|+|+++..+..++.++...+. ..+.....|..... -
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeeccccccccccccc
Confidence 45689999999999987776411 24789999999999999998866541 13344444432211 1
Q ss_pred CCCceeEEEecccccc
Q 027913 191 SDASVDAVVGTLVLCS 206 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~ 206 (217)
..+.||+|+.+=-+-.
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 1257999999754443
No 238
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.40 E-value=1.3e-05 Score=61.25 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=57.7
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
.+.++||+|+|.|..+..++ ..-..|.+.++|..|..+.+++ +..++ ...+..-.+-+||+|.|.+.+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk---------~ynVl--~~~ew~~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK---------NYNVL--TEIEWLQTDVKLDLILCLNLL 179 (288)
T ss_pred CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc---------CCcee--eehhhhhcCceeehHHHHHHH
Confidence 46899999999999998886 3334699999999999888865 22222 222222234579999999999
Q ss_pred cccCChhhhhc
Q 027913 205 CSVKDVDMTLQ 215 (217)
Q Consensus 205 ~~~~d~~~~L~ 215 (217)
..--+|-..|+
T Consensus 180 DRc~~p~kLL~ 190 (288)
T KOG3987|consen 180 DRCFDPFKLLE 190 (288)
T ss_pred HhhcChHHHHH
Confidence 88777776664
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0016 Score=54.82 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCC-CceeE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSD-ASVDA 197 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~-~sfD~ 197 (217)
.++.+|||+.++.|.-+..+++ ..+..|+++|.++.-++..+++++..|+ .++..+..|...++ ... +.||.
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--RNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--CceEEEecccccccccccccCcCcE
Confidence 4889999999999988877775 2245679999999999999999999998 57888998887664 222 35999
Q ss_pred EEe
Q 027913 198 VVG 200 (217)
Q Consensus 198 V~~ 200 (217)
|+.
T Consensus 233 iLl 235 (355)
T COG0144 233 ILL 235 (355)
T ss_pred EEE
Confidence 985
No 240
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.35 E-value=0.00018 Score=54.59 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=46.1
Q ss_pred CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CC--C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VS--D 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~--~ 192 (217)
.+.++||+||++|.++..+.+.. ...|+|+|+.+. ... .++.++++|+.... +. .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--QNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--cceeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999999998654 579999999876 111 46777777765421 11 2
Q ss_pred CceeEEEeccccc
Q 027913 193 ASVDAVVGTLVLC 205 (217)
Q Consensus 193 ~sfD~V~~~~~l~ 205 (217)
+.||+|++=.+..
T Consensus 90 ~~~dlv~~D~~~~ 102 (181)
T PF01728_consen 90 EKFDLVLSDMAPN 102 (181)
T ss_dssp CSESEEEE-----
T ss_pred cCcceeccccccC
Confidence 6899999866433
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.34 E-value=0.0016 Score=52.73 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCCeEEEECCcCCcchHhhh-hC--CCCeEEEecCCHHHHHHHHHHHH-HcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYA-AD--TDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~-~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
.+.+|+=||+|.=.++..+. +. .+..++++|++++.++.+++... ..++. .++.|+.+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhccccccccCCEEEE
Confidence 35699999999887765544 32 35689999999999999999887 44554 6899999999888755568999987
Q ss_pred ccccc
Q 027913 201 TLVLC 205 (217)
Q Consensus 201 ~~~l~ 205 (217)
.....
T Consensus 199 AalVg 203 (276)
T PF03059_consen 199 AALVG 203 (276)
T ss_dssp -TT-S
T ss_pred hhhcc
Confidence 65443
No 242
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.22 E-value=0.0023 Score=52.30 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~ 199 (217)
.++..|||+.+|.|.-+..++.. ....+++.|+++.-+...+++++..|+ .++.....|..... .....||.|+
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccchhh
Confidence 48889999999999988887762 246899999999999999999999998 58888888887762 2334699999
Q ss_pred e
Q 027913 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 162 v 162 (283)
T PF01189_consen 162 V 162 (283)
T ss_dssp E
T ss_pred c
Confidence 6
No 243
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.19 E-value=0.00074 Score=57.26 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
....|||||+|||.++...++..+..|++++.=..|.+.|++...+.|+. +++.++.-
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInk 123 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINK 123 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecc
Confidence 34569999999999888777777778999999999999999999999987 67777654
No 244
>PHA01634 hypothetical protein
Probab=97.14 E-value=0.005 Score=43.61 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 171 (217)
-.+++|+|||++-|..+.+++-.....|+++++++...+..+++.+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 488999999999999999998666679999999999999999887654
No 245
>PRK10742 putative methyltransferase; Provisional
Probab=97.04 E-value=0.004 Score=49.49 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=60.7
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc------CCC-CCCeEEEeccccccc-CCCCceeEEE
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA------GLP-LTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~-~~~v~~~~~d~~~l~-~~~~sfD~V~ 199 (217)
+|||+-+|.|..+..++.. |.+|+++|-++.+....++.+... +.. ..+++++.+|...+- -...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999998854 667999999999988888877653 110 146888999987652 1224799999
Q ss_pred eccccccc
Q 027913 200 GTLVLCSV 207 (217)
Q Consensus 200 ~~~~l~~~ 207 (217)
.==++.|-
T Consensus 170 lDPMfp~~ 177 (250)
T PRK10742 170 LDPMFPHK 177 (250)
T ss_pred ECCCCCCC
Confidence 87777763
No 246
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.0065 Score=49.41 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---
Q 027913 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--- 189 (217)
Q Consensus 116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--- 189 (217)
...++.+. .+++..+|.--|.|.++.++.+..+ ..++|+|-.+.+++.|++.+...+ +++.++...+..+.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHH
Confidence 34455554 5778999999999999999997443 579999999999999999998766 68999999887764
Q ss_pred --CCCCceeEEEecc
Q 027913 190 --VSDASVDAVVGTL 202 (217)
Q Consensus 190 --~~~~sfD~V~~~~ 202 (217)
...+.+|-|+.-.
T Consensus 90 ~~~~i~~vDGiL~DL 104 (314)
T COG0275 90 KELGIGKVDGILLDL 104 (314)
T ss_pred HhcCCCceeEEEEec
Confidence 2345788887643
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.97 E-value=0.0024 Score=53.12 Aligned_cols=76 Identities=20% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHH-----HHcCCCCCCeEEEeccccccc-CCCCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAA-----VAAGLPLTNFKFLQAVGEAIP-VSDASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~-----~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~ 197 (217)
...+||-+|.|.|.-++.+.+.+ ..+++.+|++|.|++.++++. .+..+..+++.++..|+.++- -..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45689999999999999999877 469999999999999999433 222333468999999987763 23458999
Q ss_pred EEe
Q 027913 198 VVG 200 (217)
Q Consensus 198 V~~ 200 (217)
||.
T Consensus 369 vIV 371 (508)
T COG4262 369 VIV 371 (508)
T ss_pred EEE
Confidence 985
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.90 E-value=0.0022 Score=52.66 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913 118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V 190 (217)
Q Consensus 118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~ 190 (217)
+++.+. .++...+|.--|.|.++..+++ .++.+++|+|..+.+++.+++++...+ .++.++.+++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHc
Confidence 444443 4788999999999999999986 345899999999999999998876553 68999999998874 3
Q ss_pred -CCCceeEEEecc--cccccCChhh
Q 027913 191 -SDASVDAVVGTL--VLCSVKDVDM 212 (217)
Q Consensus 191 -~~~sfD~V~~~~--~l~~~~d~~~ 212 (217)
....+|.|+.=. +.+++.++++
T Consensus 89 ~~~~~~dgiL~DLGvSS~Qld~~~R 113 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSSMQLDDPER 113 (310)
T ss_dssp TTTS-EEEEEEE-S--HHHHHTGGG
T ss_pred cCCCccCEEEEccccCHHHhCCCCC
Confidence 345899998744 3345555544
No 249
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0058 Score=50.89 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC---------CCCeEEEecCCHHHHHHHHHHHHHc
Q 027913 109 AEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 109 ~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~ 171 (217)
+.+..+..+.++.+. +.+..++|||.|+|.++..+++. ...++..|++|++..++-++.++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 335556566666666 45678999999999998777651 1458999999999988888887544
No 250
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.85 E-value=0.0046 Score=47.40 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=47.5
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-----CCCeEEEeccccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-----LTNFKFLQAVGEA 187 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~v~~~~~d~~~ 187 (217)
+...+.|||||-|.++..++. .+...+.|++|--..-++.++++...... ..|+.++..+...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 455799999999999999885 67789999999999999999888654311 1355555555433
No 251
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.81 E-value=0.0075 Score=48.36 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC----------------C----------CCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL----------------P----------LTN 177 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----------------~----------~~~ 177 (217)
.++.++||||||.-.+-..-+......++..|.++..++..++.++..+. . ...
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35678999999986553333334455899999999999988888754320 0 001
Q ss_pred e-EEEeccccccc-CCC-----CceeEEEecccccccC
Q 027913 178 F-KFLQAVGEAIP-VSD-----ASVDAVVGTLVLCSVK 208 (217)
Q Consensus 178 v-~~~~~d~~~l~-~~~-----~sfD~V~~~~~l~~~~ 208 (217)
| .++..|+...+ +.. ..||+|++.+.++...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 2 35667776653 332 3599999999998764
No 252
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.79 E-value=0.0032 Score=50.46 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCeEEEECCcCCcchHhhhh---CC------CCeEEEecCCHHHHHHHHHHHHHc-----CCCCCCeEEEecccccccCC
Q 027913 126 AKKVLEIGIGTGPNLKYYAA---DT------DVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIPVS 191 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~------~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~l~~~ 191 (217)
+.+|+|+|+|+|.++..+++ .. ..+++.||+|+.+.+.-++++... ... .++.+ ..++...|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~-~~i~w-~~~l~~~p-- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFG-DPIRW-LDDLEEVP-- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTC-GCEEE-ESSGGCS---
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccC-Cccch-hhhhhccc--
Confidence 47999999999999887775 11 248999999999988888887542 121 35666 33444443
Q ss_pred CCceeEEEecccccccC
Q 027913 192 DASVDAVVGTLVLCSVK 208 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~~~ 208 (217)
..-+|+++.+|..+|
T Consensus 95 --~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 --FPGFIIANELFDALP 109 (252)
T ss_dssp --CCEEEEEESSGGGS-
T ss_pred --CCEEEEEeeehhcCc
Confidence 345677777777665
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0053 Score=46.49 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=45.2
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccc--------cCCC
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI--------PVSD 192 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l--------~~~~ 192 (217)
.++.+|||+||..|.++.-..+ .+...|.|||+-.- .++.-+.++.+ |+.+. .+++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 6899999999999999876665 46778999998432 11123445555 55442 1566
Q ss_pred CceeEEEecc
Q 027913 193 ASVDAVVGTL 202 (217)
Q Consensus 193 ~sfD~V~~~~ 202 (217)
..+|+|++-+
T Consensus 135 r~VdvVlSDM 144 (232)
T KOG4589|consen 135 RPVDVVLSDM 144 (232)
T ss_pred CcccEEEecc
Confidence 7888888643
No 254
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.72 E-value=0.007 Score=50.11 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~ 205 (217)
-...+|+|.|.|..+..+.. ....+-+++.....+..++..+. .| |+.+-+|+-.- .| +-|+|++-+++|
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~-~P--~~daI~mkWiLh 247 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD-TP--KGDAIWMKWILH 247 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC-----cceeccccccc-CC--CcCeEEEEeecc
Confidence 47899999999999999887 44458899999998888877764 33 56788887554 33 345999999999
Q ss_pred ccCCh
Q 027913 206 SVKDV 210 (217)
Q Consensus 206 ~~~d~ 210 (217)
|++|-
T Consensus 248 dwtDe 252 (342)
T KOG3178|consen 248 DWTDE 252 (342)
T ss_pred cCChH
Confidence 99874
No 255
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.71 E-value=0.01 Score=46.46 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=55.9
Q ss_pred CCCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccc-c-c---CCCCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-I-P---VSDASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~-l-~---~~~~sfD~ 197 (217)
+..++||||.|.-=.=..+- ...+++.+|.|+++..+..|+..+... ++. ..++.....-.. + + -.++.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccCccccccccccccceeee
Confidence 55689999887652211121 266889999999999999999998766 553 455555442222 1 1 23578999
Q ss_pred EEeccccccc
Q 027913 198 VVGTLVLCSV 207 (217)
Q Consensus 198 V~~~~~l~~~ 207 (217)
++|+--||.-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999888854
No 256
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.65 E-value=0.017 Score=46.70 Aligned_cols=87 Identities=17% Similarity=0.068 Sum_probs=62.2
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH---cC-------------------------C---
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA---AG-------------------------L--- 173 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~-------------------------~--- 173 (217)
.+.+||-=|||.|+++..++. .|..+.|.|.|-.|+-..+-.+.. .+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 457899999999999999984 478999999999997665543321 00 0
Q ss_pred -------CCCCeEEEecccccccCCC---CceeEEEecccccccCChhh
Q 027913 174 -------PLTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDVDM 212 (217)
Q Consensus 174 -------~~~~v~~~~~d~~~l~~~~---~sfD~V~~~~~l~~~~d~~~ 212 (217)
...++....+|+..+-.++ ++||+|+..+.+.-.++.-+
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~ 183 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIE 183 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHH
Confidence 1236777788887775444 79999998876655444433
No 257
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0091 Score=46.27 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~ 200 (217)
.++.+||+||-|-|...-.+-+.+...-+.|+..++.+++.++..-.. ..||..+.+-.++. .++++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcceeEe
Confidence 589999999999998777765566678899999999999888764222 25777777766654 277889999985
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.59 E-value=0.02 Score=46.06 Aligned_cols=81 Identities=22% Similarity=0.163 Sum_probs=50.0
Q ss_pred CeEEEECCcC--CcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----------CC
Q 027913 127 KKVLEIGIGT--GPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------VS 191 (217)
Q Consensus 127 ~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----------~~ 191 (217)
...||||||- -.+...+++ .+..+|+-+|..+-.+..++..+....- ....++.+|+.+.. +.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 4699999993 345666765 7889999999999999999998855431 23889999997642 11
Q ss_pred CCceeEEEecccccccCC
Q 027913 192 DASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~~~d 209 (217)
-..-=.|+...+|||++|
T Consensus 148 ~~rPVavll~~vLh~v~D 165 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPD 165 (267)
T ss_dssp TTS--EEEECT-GGGS-C
T ss_pred CCCCeeeeeeeeeccCCC
Confidence 122236778899999987
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.53 E-value=0.0009 Score=46.08 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=24.5
Q ss_pred EEECCcCCcchHhhhhC--CC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEec
Q 027913 130 LEIGIGTGPNLKYYAAD--TD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT 201 (217)
Q Consensus 130 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~ 201 (217)
||||+..|..+..+++. .. .+++++|+.+. .+.+++.+++.++. .+++++.++..+. + ++.+++|+|+.=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------GGG--BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 69999999988877752 22 37999999996 44455555545554 6899999998654 2 445789999853
No 260
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.012 Score=51.23 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=68.2
Q ss_pred HhhhhhHhHHHHHHHHHHHHHHHhc--CC--CCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHH
Q 027913 99 VMNSSMKSYEAEVAGYKSQLFDNLR--GK--AKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~ 169 (217)
.|++..-.|.+........++++.. .+ ...|+-+|+|-|.+.....+ ..-.++++|+.+|+++-..+.. +
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c
Confidence 3444444455433344444555543 11 45688999999998766543 2345899999999998877763 3
Q ss_pred HcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 170 AAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 170 ~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
-..|. .+|+.+..|++.++-+..+.|++++
T Consensus 416 ~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 416 FECWD-NRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred hhhhc-CeeEEEeccccccCCchhhccchHH
Confidence 33444 7999999999999855588999886
No 261
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.19 E-value=0.022 Score=47.81 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913 111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 111 ~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 167 (217)
+.+.+..+.+.. +-..|+|+|.|.|++++.+.-..+..|.+||-|....++|++.
T Consensus 141 lselvSsi~~f~--gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFT--GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhc--CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 334444444443 6678999999999999999878889999999998777776644
No 262
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.13 E-value=0.0069 Score=50.02 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=61.7
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHH-------HHHHHHHcCCCCCCeEEEecccccccCC-CCce
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-------AQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASV 195 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sf 195 (217)
.+++-|+|==.|||.++...+ ..|..|+|.|++-.|+.. .+.++++.|....=+.++.+|...-|+. ...|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 488999999999999887765 778899999999999883 4567777775434567889999888754 4689
Q ss_pred eEEEe
Q 027913 196 DAVVG 200 (217)
Q Consensus 196 D~V~~ 200 (217)
|+|+|
T Consensus 286 DaIvc 290 (421)
T KOG2671|consen 286 DAIVC 290 (421)
T ss_pred eEEEe
Confidence 99998
No 263
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.09 E-value=0.015 Score=45.24 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
..+.++++.....++..|||-=||+|..+.... ..+.+.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 355566666665789999999999998877654 778899999999999998875
No 264
>PRK11524 putative methyltransferase; Provisional
Probab=96.07 E-value=0.024 Score=46.31 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH
Q 027913 112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (217)
Q Consensus 112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 170 (217)
.++.++++.....++..|||-=+|+|..+.... ..+.+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 355666666666789999999999998876654 7788999999999999999999853
No 265
>PRK13699 putative methylase; Provisional
Probab=96.00 E-value=0.031 Score=44.13 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 171 (217)
.+.+.++.....++..|||-=||+|..+.... ..+.+++|+|++++..+.+.+++.+.
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 44555666555688999999999998887654 66889999999999999999988653
No 266
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.93 E-value=0.035 Score=47.16 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V 198 (217)
.++.+|||+.+..|.-+.++|. ..-..+++.|.+.+-++..+.++...|+ .+......|...+| ++. +||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCc-cccee
Confidence 4789999999999987777665 2334699999999999999999999998 58888889988776 554 89999
Q ss_pred Ee
Q 027913 199 VG 200 (217)
Q Consensus 199 ~~ 200 (217)
+.
T Consensus 317 LL 318 (460)
T KOG1122|consen 317 LL 318 (460)
T ss_pred ee
Confidence 84
No 267
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.021 Score=44.91 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCC-eEEEeccccccc---CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN-FKFLQAVGEAIP---VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-v~~~~~d~~~l~---~~~~sfD~V~ 199 (217)
.++..+||||+.||.++..+.+.....|+++|....++..--+. + ++ +.+...+++.+. +. +..|+|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d---~rV~~~E~tN~r~l~~~~~~-~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D---PRVIVLERTNVRYLTPEDFT-EKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C---CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence 58899999999999999999877778999999998766543332 1 22 233444555442 33 2677888
Q ss_pred eccccccc
Q 027913 200 GTLVLCSV 207 (217)
Q Consensus 200 ~~~~l~~~ 207 (217)
+-.+|-.+
T Consensus 150 ~DvSFISL 157 (245)
T COG1189 150 IDVSFISL 157 (245)
T ss_pred EEeehhhH
Confidence 76666544
No 268
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.82 E-value=0.13 Score=40.30 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V 198 (217)
.++.+||-+|+++|.....++. .+...|++|+.|+...+..-..++++ .|+-.+..|+.... .--+.+|+|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccccccEE
Confidence 4788999999999998877775 55678999999996555544444443 68999999997542 112489999
Q ss_pred Eec
Q 027913 199 VGT 201 (217)
Q Consensus 199 ~~~ 201 (217)
++-
T Consensus 148 ~~D 150 (229)
T PF01269_consen 148 FQD 150 (229)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.69 E-value=0.039 Score=43.58 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=45.8
Q ss_pred CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHH---HHHHHcCCC----CCCeEEEecccccc-cCCCCceeEE
Q 027913 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ---TAAVAAGLP----LTNFKFLQAVGEAI-PVSDASVDAV 198 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~~----~~~v~~~~~d~~~l-~~~~~sfD~V 198 (217)
.+|||.-+|-|.-+.-++ ..|.+|+++|-|+-+....+ +++...... ..+++++.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 489999999999887776 35779999999997655444 333332210 13789999998774 4567899999
Q ss_pred Eecccccc
Q 027913 199 VGTLVLCS 206 (217)
Q Consensus 199 ~~~~~l~~ 206 (217)
+.--||.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99888776
No 270
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.68 E-value=0.047 Score=43.50 Aligned_cols=87 Identities=18% Similarity=0.071 Sum_probs=50.6
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc-----CCCCCCeEEEeccccccc---CCCCc-e
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIP---VSDAS-V 195 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~l~---~~~~s-f 195 (217)
...+|||+|.|+|..+..++...+.+|+..|+..-+.. .+.+.... .+. ..+.....+....+ +-... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCCcc
Confidence 35679999999997666666567788888888764332 22221111 110 13334333333321 11123 9
Q ss_pred eEEEecccccccCChhhh
Q 027913 196 DAVVGTLVLCSVKDVDMT 213 (217)
Q Consensus 196 D~V~~~~~l~~~~d~~~~ 213 (217)
|+|++..++++-..++.+
T Consensus 164 DlilasDvvy~~~~~e~L 181 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGL 181 (248)
T ss_pred cEEEEeeeeecCCcchhH
Confidence 999999988876655544
No 271
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.63 E-value=0.047 Score=45.68 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCCCeEEEECCcCCcchHhhhh-----------CCC------CeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEec-
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-----------DTD------VQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQA- 183 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-----------~~~------~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~- 183 (217)
...-+|+|+||..|.++..+.. ..+ .+|+.-|+-.+-....-+.+.... +...+--|+.+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 4567899999999988765543 111 478888887654333222221110 00001133333
Q ss_pred --ccccccCCCCceeEEEecccccccCCh
Q 027913 184 --VGEAIPVSDASVDAVVGTLVLCSVKDV 210 (217)
Q Consensus 184 --d~~~l~~~~~sfD~V~~~~~l~~~~d~ 210 (217)
.+-.--+|+++.|++++.++|||+...
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~v 123 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQV 123 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS
T ss_pred CchhhhccCCCCceEEEEEechhhhcccC
Confidence 222223889999999999999999874
No 272
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.53 E-value=0.24 Score=39.25 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~ 200 (217)
-.+++||=||=+--..+.........+++.+|+.+.+++..++.+++.|+ +++.+..|+..- | --.++||++++
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCEEEe
Confidence 47899999996655433322236678999999999999999999999997 499999998763 3 11379999986
No 273
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.45 E-value=0.039 Score=44.87 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=50.1
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--CCceeEEEecc
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTL 202 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~sfD~V~~~~ 202 (217)
+++|+-||.|.+...+.+.....++++|+++..++..+.+.. . .++..|+..+... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------N-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------C-CCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999877765444568999999999988887752 1 1566777776422 35699998754
No 274
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.42 E-value=0.054 Score=46.05 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=51.8
Q ss_pred CCCeEEEECCcCCcchHhhhh----------------CCCCeEEEecCCHHHHHHHHHHHHH---------cCC--CCCC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA----------------DTDVQVLGVDPNRKMEKYAQTAAVA---------AGL--PLTN 177 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~----------------~~~~~v~gvD~s~~~l~~a~~~~~~---------~~~--~~~~ 177 (217)
...+|+|+|||+|.++..+.. .+..++..-|+..+-....-+.+.. ..+ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 356899999999987654432 1245788888776544333333211 000 0011
Q ss_pred eEEEecccccc---cCCCCceeEEEecccccccCChh
Q 027913 178 FKFLQAVGEAI---PVSDASVDAVVGTLVLCSVKDVD 211 (217)
Q Consensus 178 v~~~~~d~~~l---~~~~~sfD~V~~~~~l~~~~d~~ 211 (217)
.-|+.+-...+ -||+++.+++++.+++||+....
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP 179 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVP 179 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCc
Confidence 12333322221 38899999999999999998643
No 275
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.41 E-value=0.013 Score=40.28 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s 157 (217)
+....+|||||+|.+.--|. .-|..-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHH-hCCCCccccccc
Confidence 56789999999998776665 446667888863
No 276
>PTZ00357 methyltransferase; Provisional
Probab=95.25 E-value=0.22 Score=45.28 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=50.6
Q ss_pred CeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHH-HHcCCCC------CCeEEEecccccccCCC--
Q 027913 127 KKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA-VAAGLPL------TNFKFLQAVGEAIPVSD-- 192 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~------~~v~~~~~d~~~l~~~~-- 192 (217)
..|+=+|+|-|.+.....+ ....++++||.|++.+.....+. ....|.. ..|+++..|++.+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3589999999988655443 22458999999976544444433 3334421 35899999999985331
Q ss_pred ---------CceeEEEe
Q 027913 193 ---------ASVDAVVG 200 (217)
Q Consensus 193 ---------~sfD~V~~ 200 (217)
+.+|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 37999997
No 277
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.22 E-value=0.085 Score=44.88 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVV 199 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~ 199 (217)
.+.++||.=+|+|--+..++.+ ....|+.-|+|++.++..+++++-.++....+++...|+..+- .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 4568999999999877666654 3468999999999999999999999986336889999988763 2457899884
No 278
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.13 E-value=0.089 Score=38.18 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=39.3
Q ss_pred eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecc
Q 027913 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTL 202 (217)
Q Consensus 150 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~ 202 (217)
+|+|.|+-+++++.+++++.+.++. .+++++..+-+.+. .+.+.+|+|+.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEEC
Confidence 5899999999999999999999876 58999999888875 3445899998754
No 279
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.026 Score=41.85 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCeEEEECCcC-CcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccc--cCCCCceeEEE
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI--PVSDASVDAVV 199 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l--~~~~~sfD~V~ 199 (217)
.+.+|||+|.|- |.-+..++. .+...|+..|-+++.++-.++........ ..++..+..+...- ..+...||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 567899999994 443444443 66778999999999998888776443110 02222222222211 13446899999
Q ss_pred eccccc
Q 027913 200 GTLVLC 205 (217)
Q Consensus 200 ~~~~l~ 205 (217)
+...+-
T Consensus 109 aADClF 114 (201)
T KOG3201|consen 109 AADCLF 114 (201)
T ss_pred eccchh
Confidence 987653
No 280
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.23 Score=38.30 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=52.3
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV 199 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~ 199 (217)
.++.+||=+|+.+|.....++. .....+++|+.|+.+....-..+.+. .|+--+..|+.... .--+.+|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccccEEE
Confidence 5889999999999998888775 23467999999998777666665554 47777888876532 1113467665
Q ss_pred e
Q 027913 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 151 ~ 151 (231)
T COG1889 151 Q 151 (231)
T ss_pred E
Confidence 4
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.59 E-value=0.19 Score=41.91 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc-cccccCCCCceeEEEec
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT 201 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d-~~~l~~~~~sfD~V~~~ 201 (217)
.++.+|+=+|+| -|.++..+++..+.+|+++|.+++-++.|++.- . -.++... .....--.+.||+|+..
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG----A----d~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG----A----DHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC----C----cEEEEcCCchhhHHhHhhCcEEEEC
Confidence 578888888887 345677788777899999999999999998763 1 2344322 22222111249999987
Q ss_pred cc
Q 027913 202 LV 203 (217)
Q Consensus 202 ~~ 203 (217)
-.
T Consensus 237 v~ 238 (339)
T COG1064 237 VG 238 (339)
T ss_pred CC
Confidence 66
No 282
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.50 E-value=0.28 Score=43.30 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=61.1
Q ss_pred HHHHHHHhc-CCCCeEEEECCcCCcchHhhhh----CC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA----DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~----~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
.+.+.+.+. .+..+|+|-.||+|.++....+ .. ...++|.|+++.....++-+.--.|+.. ++....+|...-
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~ 253 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DANIRHGDTLSN 253 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-cccccccccccC
Confidence 333344443 3566999999999988765544 12 2569999999999999999987777642 445566665444
Q ss_pred cC-----CCCceeEEEecccc
Q 027913 189 PV-----SDASVDAVVGTLVL 204 (217)
Q Consensus 189 ~~-----~~~sfD~V~~~~~l 204 (217)
|. ..+.||.|+++--+
T Consensus 254 ~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 254 PKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred CcccccCCccceeEEEeCCCC
Confidence 42 33679999886544
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.49 E-value=0.1 Score=40.36 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=35.4
Q ss_pred HHHHhcCCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
++-.+ ++..|+|+|.-.|..+..++. ....+|+|||+.-...... ..+...+. ++++++++|..+.
T Consensus 27 li~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~-~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 27 LIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS-PRITFIQGDSIDP 97 (206)
T ss_dssp HHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSST
T ss_pred HHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc-CceEEEECCCCCH
Confidence 44445 899999999999988777664 3557999999953322111 11111222 5899999998654
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.44 E-value=0.15 Score=39.73 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~ 169 (217)
..+-++.|-.||.|+++--+.- ..-..++|-|+++++++.|++++.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 4667899999999988644331 223479999999999999998864
No 285
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.06 E-value=0.26 Score=41.35 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCeEEEECCcCCcchHhhhhCCCC-eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEE
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVV 199 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~ 199 (217)
+.+|||.=+|+|.=+..++.+.+. +++.-|+||+.++.++++++.+.. .+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHHHHHhcCCCccEEe
Confidence 789999999999877777754444 899999999999999999987732 3556666777666322 25677763
No 286
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.95 E-value=0.065 Score=43.63 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=54.8
Q ss_pred CCCCeEEEECCcCCcchH-hhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 124 GKAKKVLEIGIGTGPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
..+..|+|+-+|-|+++. .+.......|+++|.+|..++..++.++..++. .+...+.+|-+.. -++...|.|..
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~~-~~~~~AdrVnL 268 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRNP-KPRLRADRVNL 268 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhcccccc-Cccccchheee
Confidence 366899999999999998 666666779999999999999999998776543 3334444554333 34566666654
No 287
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.59 E-value=0.27 Score=34.90 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=34.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEeccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~ 203 (217)
...+|+|||-|.=.......+..|..|+++|+.+. .+. .| +.++..|+.+-.+. -...|+|++..-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNLEIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------S-----TTEE---SSS--HHHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cC-----cceeeecccCCCHHHhcCCcEEEEeCC
Confidence 55699999999876655544566789999999988 111 33 45888888764311 135788887553
No 288
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.54 E-value=0.2 Score=40.55 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=31.8
Q ss_pred HhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHH
Q 027913 121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161 (217)
Q Consensus 121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l 161 (217)
++...+++|||+|||.|.............+...|.|.+.+
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 34468999999999999887776654446788888887766
No 289
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.35 E-value=0.93 Score=38.06 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc--cccCC-CCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVS-DASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~--~l~~~-~~sfD~V 198 (217)
..+++|||+|.|.|.-+-++-. -+. .+++.++.|+..-+........... ....+...|+. .++++ ...|++|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCccceeehh
Confidence 4788999999999876544432 122 3688888888755554444332222 22233333332 22322 2456666
Q ss_pred Eeccccccc
Q 027913 199 VGTLVLCSV 207 (217)
Q Consensus 199 ~~~~~l~~~ 207 (217)
+...-|-+.
T Consensus 190 i~~~eLl~d 198 (484)
T COG5459 190 IVLDELLPD 198 (484)
T ss_pred hhhhhhccc
Confidence 655544333
No 290
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.10 E-value=0.75 Score=37.63 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc--CCCCceeEE
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP--VSDASVDAV 198 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~--~~~~sfD~V 198 (217)
..+++||=||.|.|...+..+++.. .+++.+|+....++..++-.... +...+++....+|.-.+- ...++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4688999999999999988876543 47999999999999998887653 343468899999876552 456899999
Q ss_pred Ee
Q 027913 199 VG 200 (217)
Q Consensus 199 ~~ 200 (217)
+.
T Consensus 200 i~ 201 (337)
T KOG1562|consen 200 IT 201 (337)
T ss_pred EE
Confidence 85
No 291
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.04 E-value=0.42 Score=36.56 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=52.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-------CCC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-------~~~ 192 (217)
++..|+|+|.-.|..+.+++. ..| .+|+++|++-..++.+... . +.+.|+.++-.+.. ..+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~--p~i~f~egss~dpai~eqi~~~~~ 141 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V--PDILFIEGSSTDPAIAEQIRRLKN 141 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C--CCeEEEeCCCCCHHHHHHHHHHhc
Confidence 888999999999988877775 334 7899999987665444332 1 67889999876642 233
Q ss_pred CceeEEEecccccccC
Q 027913 193 ASVDAVVGTLVLCSVK 208 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~ 208 (217)
+.--+.++..+-|+..
T Consensus 142 ~y~kIfvilDsdHs~~ 157 (237)
T COG3510 142 EYPKIFVILDSDHSME 157 (237)
T ss_pred CCCcEEEEecCCchHH
Confidence 3335556666666653
No 292
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.01 E-value=0.43 Score=39.25 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=50.0
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL 202 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~ 202 (217)
+++|+=||.|.+...+.+....-+.++|+++...+..+.+. + .....|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------c--ccccccccccccccccc-cceEEEecc
Confidence 68999999999888886555457999999999999888887 3 68888998875 443 599988643
No 293
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.69 E-value=3.2 Score=35.35 Aligned_cols=90 Identities=18% Similarity=0.351 Sum_probs=57.4
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcc----hHhhhhC----CCCeEEEecC----CHHHHHHHHHHHHH----cCCCCCCeE
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPN----LKYYAAD----TDVQVLGVDP----NRKMEKYAQTAAVA----AGLPLTNFK 179 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~----~~~l~~~----~~~~v~gvD~----s~~~l~~a~~~~~~----~~~~~~~v~ 179 (217)
-|++.+. ....+|+|+|.|.|.. +..|+.. +..++|||+. +..-++.+.+++.+ .|++ ++
T Consensus 101 aIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~---fe 177 (374)
T PF03514_consen 101 AILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP---FE 177 (374)
T ss_pred HHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc---EE
Confidence 3555554 3556899999999954 4455543 2348999999 88888888777643 4553 45
Q ss_pred EEec---ccccc-----cCCCCceeEEEecccccccCC
Q 027913 180 FLQA---VGEAI-----PVSDASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 180 ~~~~---d~~~l-----~~~~~sfD~V~~~~~l~~~~d 209 (217)
|... +.+.+ ...++.+=+|-+.+.|||+.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~ 215 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLD 215 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcc
Confidence 5442 33333 234455556667778899863
No 294
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=90.55 E-value=0.31 Score=41.66 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=54.5
Q ss_pred hcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
+..++..|-|+-||-|.+...++. .+..|++-|+++++++..+.+++-..+.+.+++.+..|+...
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~k-K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAK-KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhh-cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 335889999999999999988874 458899999999999999999987777655688887776543
No 295
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.31 E-value=0.72 Score=31.81 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=40.0
Q ss_pred CcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEec
Q 027913 134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGT 201 (217)
Q Consensus 134 cG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~~ 201 (217)
||.|.++..+++ ..+..++.+|.+++.++.+++. .+.++.+|..+.. ..-...|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEc
Confidence 567777766664 4455899999999988777753 3579999987653 222467777764
No 296
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.07 E-value=0.81 Score=36.90 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCCCeEEEECCcCCcchHhhhhC------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
.+...++|+|||.|.++.+++.. ....++.||-...-.+.-+ ++...... ..++-+..|+.++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~-~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESE-PKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCC-CceEEEEEEeeccc
Confidence 46779999999999999998862 3458999998765443333 33332211 25677778887764
No 297
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.96 E-value=0.92 Score=38.50 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=65.1
Q ss_pred HhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHH-------HHcCCCC
Q 027913 105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAA-------VAAGLPL 175 (217)
Q Consensus 105 ~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~ 175 (217)
..|.+.....+..+.+.+. ++.....|+|.|-|......+.. ....-+|+++...--+.+..+. +-.|-.+
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 4577777777788888887 88999999999999998887753 3345677777654433333222 2223323
Q ss_pred CCeEEEeccccccc---CCCCceeEEEecccc
Q 027913 176 TNFKFLQAVGEAIP---VSDASVDAVVGTLVL 204 (217)
Q Consensus 176 ~~v~~~~~d~~~l~---~~~~sfD~V~~~~~l 204 (217)
..++.+.++...-. .-....++|+++++.
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~ 282 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVA 282 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEeccc
Confidence 56778888765532 112457778776653
No 298
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.47 E-value=2.6 Score=33.47 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHH-HHHHHHHHHHcCCCCCCeEEEeccccccc---------C
Q 027913 124 GKAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------V 190 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---------~ 190 (217)
+.+++||=.|++.|. +++.+++..+.+|+.++.+++. ++.+.+.+...+- .++.++..|+.+.. .
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHHH
Confidence 366789999987662 2333443445789999888764 6655555544432 36888988886532 1
Q ss_pred CCCceeEEEecccc
Q 027913 191 SDASVDAVVGTLVL 204 (217)
Q Consensus 191 ~~~sfD~V~~~~~l 204 (217)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12579988865543
No 299
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=88.36 E-value=0.62 Score=40.38 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHH---cCCC-CCCeEEEecccccccCC-CCce
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA---AGLP-LTNFKFLQAVGEAIPVS-DASV 195 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~-~~~v~~~~~d~~~l~~~-~~sf 195 (217)
..+..++|+|.|.|.-.-.+.. .....++.||.|..|........+. .|.. ..++.|.. ..+|.. ...|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence 3567788998887754433322 3345799999999999998887754 1211 00101111 123533 3459
Q ss_pred eEEEecccccccCChh
Q 027913 196 DAVVGTLVLCSVKDVD 211 (217)
Q Consensus 196 D~V~~~~~l~~~~d~~ 211 (217)
|+|++.+.++++....
T Consensus 276 Dlvi~ah~l~~~~s~~ 291 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKF 291 (491)
T ss_pred eeEEeeeeeeccCCch
Confidence 9999999999987755
No 300
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.87 E-value=0.87 Score=31.78 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~ 201 (217)
..++|+|||.|-=.-.....+..|..++++|+++. .++ . -+++++.|+.+.... -...|+|++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----~-----g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----E-----GLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----c-----cceEEEccCCCccHHHhhCccceeec
Confidence 45699999998765433333466789999999987 222 2 357999998775421 1346777764
No 301
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.81 E-value=1.5 Score=35.62 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=55.2
Q ss_pred CCCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~ 200 (217)
.++.|+=+|-. -..+..++ .....++..+|+.+-.++...+.+.+.|+ +|++.++.|+.+. | .-.+.||+++.
T Consensus 152 ~gK~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--NNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--cchhheeehhcccChHHHHhhCCeeec
Confidence 67889999933 33333333 46677999999999999999999999998 5899999998763 3 11268998864
No 302
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=87.77 E-value=1.4 Score=39.61 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR 158 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~ 158 (217)
.+...|||+||..|.++.-..+ ..+.-|+|||+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 4778899999999998876665 3456899999876
No 303
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.27 E-value=1.9 Score=36.87 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 169 (217)
.++.+||=|..|....+.++. ....+|++||+|+.++...+-+..
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHHH
Confidence 588899999999888888876 444789999999998887776553
No 304
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.64 E-value=1.3 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=24.7
Q ss_pred EECCcCC--cchHhhh---hCCCCeEEEecCCHHHHHHHHHH
Q 027913 131 EIGIGTG--PNLKYYA---ADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 131 DiGcG~G--~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~ 167 (217)
|||++.| ....++. ..++.+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 25677899999999999999888
No 305
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.26 E-value=4.8 Score=31.72 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=48.0
Q ss_pred HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
.+.+... -...-|++||.|.|..++.+..........+++...++.-.+-..+... .++....+|+...
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVLRF 110 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEecccccee
Confidence 3444333 3566799999999999999987666678888888877766665544222 4677777777543
No 306
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.85 E-value=1.3 Score=36.73 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=45.4
Q ss_pred EEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEec
Q 027913 129 VLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT 201 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~ 201 (217)
|+|+-||.|.+...+.+....-+.++|+++..++..+.++. . .++.+|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-------~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-------N-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-------C-CCCccChhhhhhhhCCCcCEEEec
Confidence 58999999998888764433346789999998888887752 2 3456777776421 1257888764
No 307
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.48 E-value=3.1 Score=30.31 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=52.6
Q ss_pred eEEEECCcCC---cchHhhhhCCCCeEEEecCC--HHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCC
Q 027913 128 KVLEIGIGTG---PNLKYYAADTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD 192 (217)
Q Consensus 128 ~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~ 192 (217)
++|=+|++.| .+++.+++..+..++.+..+ .+.++...+.+...+ .++.++..|+.+.. ...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 5677787766 23455555656688999988 676777766666666 58899999986531 123
Q ss_pred CceeEEEecccccc
Q 027913 193 ASVDAVVGTLVLCS 206 (217)
Q Consensus 193 ~sfD~V~~~~~l~~ 206 (217)
+.+|+++.+.....
T Consensus 79 ~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 79 GPLDILINNAGIFS 92 (167)
T ss_dssp SSESEEEEECSCTT
T ss_pred cccccccccccccc
Confidence 67999998776654
No 308
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.24 E-value=8.4 Score=30.10 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCCeEEEECCcCCc--chHhhh---hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccccCCCCceeEE
Q 027913 125 KAKKVLEIGIGTGP--NLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAV 198 (217)
Q Consensus 125 ~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~~~~~sfD~V 198 (217)
..+.++++.++.|. .+..|+ ++.+.+++.|-+.++-+...++.+...++. +.++|++++. +.+--.-...|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHhhccCCCEE
Confidence 55679999766542 233333 367888999999999888888888877764 4579998884 3332111357776
Q ss_pred Ee
Q 027913 199 VG 200 (217)
Q Consensus 199 ~~ 200 (217)
+.
T Consensus 120 vV 121 (218)
T PF07279_consen 120 VV 121 (218)
T ss_pred EE
Confidence 64
No 309
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=83.48 E-value=16 Score=32.72 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=21.9
Q ss_pred CeEEEECCcCCcch-------HhhhhCCCCeEEEec---CCHHHHHHHHHHHHHcCC
Q 027913 127 KKVLEIGIGTGPNL-------KYYAADTDVQVLGVD---PNRKMEKYAQTAAVAAGL 173 (217)
Q Consensus 127 ~~vLDiGcG~G~~~-------~~l~~~~~~~v~gvD---~s~~~l~~a~~~~~~~~~ 173 (217)
.+|| |=||.|.++ +.|. ..|.+|+.+- .++.....+.+.++..+.
T Consensus 136 ~~Vl-VlcGpGNNGGDGLVaAR~L~-~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi 190 (544)
T PLN02918 136 SRVL-AICGPGNNGGDGLVAARHLH-HFGYKPFVCYPKRTAKPLYTGLVTQLESLSV 190 (544)
T ss_pred CEEE-EEECCCcCHHHHHHHHHHHH-HCCCceEEEEcCCCCcHHHHHHHHHHHHcCC
Confidence 4555 667777653 3332 4455555542 233333334445555443
No 310
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.43 E-value=6.1 Score=32.46 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=57.9
Q ss_pred CCCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C
Q 027913 124 GKAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~ 190 (217)
-.++.||==|.|.|. .+..++ ..+..++..|++++-.+...+.+++.| ++.....|+.+.. -
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHHHH
Confidence 378899999999883 234444 456689999999998888888877665 5677888876531 2
Q ss_pred CCCceeEEEecccccccC
Q 027913 191 SDASVDAVVGTLVLCSVK 208 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~~~~ 208 (217)
+-+..|+++.+..+-+..
T Consensus 111 e~G~V~ILVNNAGI~~~~ 128 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGK 128 (300)
T ss_pred hcCCceEEEeccccccCC
Confidence 346899999887665543
No 311
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.43 E-value=0.47 Score=41.36 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV 198 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V 198 (217)
++.+|||.=+++|.-+..++++ ...++++-|.+++.++..+++.+..+.. +.++....|+..+ +-....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHhccccccccceE
Confidence 6779999999999888777763 3358999999999999999998777654 5566677777654 2334678888
Q ss_pred E
Q 027913 199 V 199 (217)
Q Consensus 199 ~ 199 (217)
=
T Consensus 188 D 188 (525)
T KOG1253|consen 188 D 188 (525)
T ss_pred e
Confidence 5
No 312
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=14 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~ 187 (217)
.+.+++|+|.|+..-++.+... ....++-+|+|...++...+.+...... -.+.-+++|.+.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~ 144 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYEL 144 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHH
Confidence 5789999999999877666642 2248999999999997766666444322 245667777653
No 313
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=83.00 E-value=4.3 Score=32.44 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=41.4
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCH----HHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR----KMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~----~~l~~a~~~~~~~~~~~~~v~~~~~d~~~ 187 (217)
.++.+||=+|++.|+....+.. .+..-|++++.|+ +.+..|+++ .|+--+.-|+..
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArh 216 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARH 216 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCC
Confidence 5899999999999988776664 5556799999987 455555554 466666666654
No 314
>PRK07454 short chain dehydrogenase; Provisional
Probab=82.98 E-value=8 Score=30.11 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=49.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
..+++|=.|+ +|.++..+++ ..+.+|++++.+++..+...+...+.+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4467888885 4544444443 456789999999877666665554433 46888999987642 11
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+.+....
T Consensus 81 ~~~id~lv~~ag~~ 94 (241)
T PRK07454 81 FGCPDVLINNAGMA 94 (241)
T ss_pred cCCCCEEEECCCcc
Confidence 13579998766543
No 315
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.56 E-value=2.1 Score=35.60 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=35.5
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCC-CeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTD-VQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~ 166 (217)
..+.+||=+|+|. |..+...++..| .+|+++|++++-++.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 5788999999994 556666666544 589999999999999998
No 316
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=82.54 E-value=2.1 Score=36.43 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~ 167 (217)
.++.+||.+|+|. |..+..+++..+. +++++|.++++++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4778999999987 7788888876675 699999999998888865
No 317
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.24 E-value=15 Score=33.02 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=61.9
Q ss_pred CCCeEEEECCcCCcchHhhh----hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCce
Q 027913 125 KAKKVLEIGIGTGPNLKYYA----ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASV 195 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sf 195 (217)
.+++||=-| |+|.++..+. +....+++.+|.++..+....+.+.+.-. ..++.++.+|+.+.. +.+.+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP-ELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC-CcceEEEecccccHHHHHHHHhcCCC
Confidence 567777655 5566655544 35556899999999988888777765421 257899999998763 566789
Q ss_pred eEEEecccccccCC
Q 027913 196 DAVVGTLVLCSVKD 209 (217)
Q Consensus 196 D~V~~~~~l~~~~d 209 (217)
|+|+-..++-|+|-
T Consensus 327 d~VfHAAA~KHVPl 340 (588)
T COG1086 327 DIVFHAAALKHVPL 340 (588)
T ss_pred ceEEEhhhhccCcc
Confidence 99999999999983
No 318
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.19 E-value=3.3 Score=35.92 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~ 197 (217)
...+++=+|+| .++..+++ ..+..++.+|.+++.++..++.. ..+.++.+|..+.. ..-..+|.
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 46778888885 44444443 55778999999999888777642 24568888875432 12246777
Q ss_pred EEec
Q 027913 198 VVGT 201 (217)
Q Consensus 198 V~~~ 201 (217)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 7753
No 319
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.17 E-value=1.6 Score=38.25 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=46.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
.-..|+|+.+|.|.++.+|.+.+ |+.+-.-+..-.-.-..+-++|+ +-....-.+.++.-+.+||+|.+..+|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheehhhhh
Confidence 33579999999999999997544 33333222211111122233343 122333345667666899999999988
Q ss_pred cccCC
Q 027913 205 CSVKD 209 (217)
Q Consensus 205 ~~~~d 209 (217)
....+
T Consensus 438 s~~~~ 442 (506)
T PF03141_consen 438 SLYKD 442 (506)
T ss_pred hhhcc
Confidence 87654
No 320
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=82.09 E-value=2.8 Score=34.43 Aligned_cols=75 Identities=9% Similarity=-0.067 Sum_probs=43.4
Q ss_pred CCcCCcchHhhhh----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEE----Eeccccccc-----CCCCceeEEE
Q 027913 133 GIGTGPNLKYYAA----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF----LQAVGEAIP-----VSDASVDAVV 199 (217)
Q Consensus 133 GcG~G~~~~~l~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~----~~~d~~~l~-----~~~~sfD~V~ 199 (217)
-.|+|..+..+.+ .....++.+|.++..+-..++.+....-. .++++ +.+|+.+.. +.....|+|+
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 3466777666554 33468999999999998888887543211 24444 588887643 6667899999
Q ss_pred ecccccccC
Q 027913 200 GTLVLCSVK 208 (217)
Q Consensus 200 ~~~~l~~~~ 208 (217)
-..++-|++
T Consensus 83 HaAA~KhVp 91 (293)
T PF02719_consen 83 HAAALKHVP 91 (293)
T ss_dssp E------HH
T ss_pred EChhcCCCC
Confidence 999999986
No 321
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.48 E-value=4.4 Score=29.03 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCCeEEEECCcCC-cc-hHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIGTG-PN-LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG~G-~~-~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.++++|=||+|.- .. ..++......+++.+.-+.+-.+...+.+ +- .++.++.. .++.-.-..+|+|+..-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~--~~~~~~~~--~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GG--VNIEAIPL--EDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TG--CSEEEEEG--GGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cc--cccceeeH--HHHHHHHhhCCeEEEec
Confidence 8899999999743 22 33444444456999999877555554444 11 23444433 34431124699999876
Q ss_pred ccccc
Q 027913 203 VLCSV 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
...+.
T Consensus 84 ~~~~~ 88 (135)
T PF01488_consen 84 PSGMP 88 (135)
T ss_dssp STTST
T ss_pred CCCCc
Confidence 55443
No 322
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=81.45 E-value=9.1 Score=30.09 Aligned_cols=76 Identities=20% Similarity=0.048 Sum_probs=50.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ....+++ ..+.+|+.++.+++.++...+.+++.+ .++.++..|+.+.. + .
T Consensus 10 ~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 6788998886544 4444332 457899999999887777666665544 46788888876531 0 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|.|+.+...
T Consensus 86 ~~~id~vi~~ag~ 98 (256)
T PRK06124 86 HGRLDILVNNVGA 98 (256)
T ss_pred cCCCCEEEECCCC
Confidence 1467888876654
No 323
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=80.89 E-value=7.7 Score=28.51 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCC
Q 027913 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPN 157 (217)
Q Consensus 117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s 157 (217)
........-...|||+|=|+|..-..+.+ -++..++.+|-.
T Consensus 20 ~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 20 WAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 34444545568899999999987666654 566778888753
No 324
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.55 E-value=9.3 Score=30.05 Aligned_cols=77 Identities=12% Similarity=0.014 Sum_probs=51.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|+ +|.....+++ ..|.+|++++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5778998885 4444444443 457789999999887777666665544 35778888886532 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 14588888876543
No 325
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.39 E-value=11 Score=29.31 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=46.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C-
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V- 190 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~- 190 (217)
+++++|=.|++.| ++..+++ ..+.+|++++.+++.++...+.+.+.+- ..+.++..|+.+.. +
T Consensus 5 ~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH--PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC--CCcceEEeeecccchHHHHHHHHHHH
Confidence 5678999996544 4444433 4577899999999877666555544332 24456666653210 0
Q ss_pred --CCCceeEEEecccc
Q 027913 191 --SDASVDAVVGTLVL 204 (217)
Q Consensus 191 --~~~sfD~V~~~~~l 204 (217)
-.+..|.|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01467988876654
No 326
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=80.05 E-value=6.8 Score=32.68 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=50.5
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL 202 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~ 202 (217)
..+++|+=||.|.+...+....-.-+.++|+++..++.-+.+... ..++..|+..+. +....+|+|+...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcChhhccccCCCEEEeCC
Confidence 458999999999888777644435689999999999888887632 356667776653 2212789888644
No 327
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.59 E-value=12 Score=29.28 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=47.3
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEE
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~ 199 (217)
++||=.|++.| ++..+++ ..+..+++++.++...+...+.....+ .++.++.+|+.+.. ......|+|+
T Consensus 3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG---LALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 46787777544 3433332 557889999988877666665554444 35788888886542 1224689998
Q ss_pred ecccc
Q 027913 200 GTLVL 204 (217)
Q Consensus 200 ~~~~l 204 (217)
.+...
T Consensus 79 ~~ag~ 83 (257)
T PRK09291 79 NNAGI 83 (257)
T ss_pred ECCCc
Confidence 86553
No 328
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=79.08 E-value=5.7 Score=30.05 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=50.1
Q ss_pred CCC-eEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEeccccccc---------CCC
Q 027913 125 KAK-KVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIP---------VSD 192 (217)
Q Consensus 125 ~~~-~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~---------~~~ 192 (217)
++. .|+.+|||--.....+.... +..++-+|..+ +++.-++.+.+.+.. ..+.+++..|+.+.. +..
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 444 89999999988877776533 66777788643 455555555444210 023567999987531 334
Q ss_pred CceeEEEecccccccCC
Q 027913 193 ASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d 209 (217)
+.--++++-.++.+++.
T Consensus 156 ~~ptl~i~Egvl~Yl~~ 172 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSP 172 (183)
T ss_dssp TSEEEEEEESSGGGS-H
T ss_pred CCCeEEEEcchhhcCCH
Confidence 56678888888999864
No 329
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.07 E-value=8.2 Score=32.18 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|++.|. ++..++ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la-~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFA-RRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 56788888876552 233333 457789999999988887777766655 36777788876531 0 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
.+.+|+++.+..+.
T Consensus 82 ~g~iD~lVnnAG~~ 95 (330)
T PRK06139 82 GGRIDVWVNNVGVG 95 (330)
T ss_pred cCCCCEEEECCCcC
Confidence 15789999877653
No 330
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.96 E-value=4.3 Score=36.92 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=41.2
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEE
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~ 199 (217)
.+|+=+|+| ..+..+++ ..+..++.+|.+++.++.+++ .| ...+.+|..+.. ..-+..|+|+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 355555554 44444443 567799999999999888765 23 468889987753 1224567766
Q ss_pred e
Q 027913 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
+
T Consensus 470 ~ 470 (601)
T PRK03659 470 I 470 (601)
T ss_pred E
Confidence 5
No 331
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=78.74 E-value=8.2 Score=34.27 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cC-CCCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PV-SDASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~-~~~sfD~ 197 (217)
++..+.|..||+|.++....+. ....++|-+..+.+...++.+..-.+...+......+|...- .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4568999999999988654321 123699999999999999987644443212222333343221 12 2356888
Q ss_pred EEeccc
Q 027913 198 VVGTLV 203 (217)
Q Consensus 198 V~~~~~ 203 (217)
|+++--
T Consensus 297 v~~NpP 302 (501)
T TIGR00497 297 VVSNPP 302 (501)
T ss_pred EeecCC
Confidence 887553
No 332
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.66 E-value=6.9 Score=32.23 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 169 (217)
+.+.+|.-||.|....+.++++.+ ..+.+||+++..+...+-++.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHH
Confidence 478899999999998888887554 579999999998877766553
No 333
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.99 E-value=12 Score=29.51 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=52.9
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. .+..++ ..|.+|++++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57789999986652 233343 457789999999887777766665544 36778888886532 0 1
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
-+..|+++.+.....
T Consensus 84 ~g~id~lv~~ag~~~ 98 (253)
T PRK05867 84 LGGIDIAVCNAGIIT 98 (253)
T ss_pred hCCCCEEEECCCCCC
Confidence 147899998776543
No 334
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.92 E-value=4.9 Score=36.13 Aligned_cols=63 Identities=6% Similarity=0.049 Sum_probs=40.6
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEE
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVV 199 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~ 199 (217)
.+++=+||| ..+..+++ ..+..++.+|.+++.++.+++. ....+.+|..+.. ..-+..|.|+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCEEE
Confidence 345555555 44444443 5577899999999988888642 3568888887642 1224677555
Q ss_pred e
Q 027913 200 G 200 (217)
Q Consensus 200 ~ 200 (217)
.
T Consensus 487 v 487 (558)
T PRK10669 487 L 487 (558)
T ss_pred E
Confidence 3
No 335
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.55 E-value=14 Score=29.17 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=51.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-C---------C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~---------~ 191 (217)
+++++|=.|+ +|..+..+++ ..+.+|+.++-+.+.++...+.+...+ .++.++.+|+.+.. + .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG---IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6778888885 4444444443 457789999999887777666655444 46778899887632 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
.+..|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999887654
No 336
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.49 E-value=13 Score=29.13 Aligned_cols=76 Identities=16% Similarity=0.060 Sum_probs=51.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ....+++ ..+.+|++++-+++.++...+.+.+.+ .++.++..|+.+.. + .
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREAG---GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678888887554 3333332 456789999999887777666665544 46888889886531 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1467999987654
No 337
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.43 E-value=15 Score=29.14 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=49.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++.| .+..+++ ..+.+|++++.+++.++...+.+...+ .++.++..|+.+.. +.
T Consensus 9 ~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678888886543 4444332 457799999999887766665554433 46788888886642 11
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+.+|+|+.+..
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 146899987654
No 338
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.26 E-value=19 Score=29.59 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=51.5
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 191 (217)
.++++|=.|++.|. .+..|+ ..|.+|+.++-+++..+.+.+.+....-. .++.++..|+.+.. -.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La-~~G~~Vil~~R~~~~~~~~~~~l~~~~~~-~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLA-AAGAEVILPVRNRAKGEAAVAAIRTAVPD-AKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEEecCCCHHHHHHHHHHHHHh
Confidence 56788888877662 233333 45778999999988776666655443211 36788899987642 11
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
.+..|+++.+....
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 24689999876553
No 339
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=77.09 E-value=10 Score=30.71 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913 113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA 171 (217)
Q Consensus 113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 171 (217)
....+++.....++..|||-=+|+|..+... ...+...+|+|++++.++.+.+++...
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3344444444468999999999999877655 367888999999999999999998653
No 340
>PRK06949 short chain dehydrogenase; Provisional
Probab=76.98 E-value=15 Score=28.85 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=49.4
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|++.| ....+++ ..+.+|++++.+++.++.....+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG---GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5678888885443 4433332 457789999999988777666554443 36778888876431 0 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1468998887664
No 341
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=76.84 E-value=13 Score=30.49 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHH
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~ 165 (217)
.-..+=..-|.|..+..++ ..|..|+|+|=.-.+.+.-+
T Consensus 251 ~vPmi~fakG~g~~Le~l~-~tG~DVvgLDWTvdp~ear~ 289 (359)
T KOG2872|consen 251 PVPMILFAKGSGGALEELA-QTGYDVVGLDWTVDPAEARR 289 (359)
T ss_pred CCceEEEEcCcchHHHHHH-hcCCcEEeecccccHHHHHH
Confidence 3366777889999898887 67889999998877655444
No 342
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.83 E-value=12 Score=29.39 Aligned_cols=78 Identities=17% Similarity=0.003 Sum_probs=50.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|+. |.....+++ ..+.+|++++.++...+...+.+.+.+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG---GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC---ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46678866654 444433332 456789999999987777776665544 46788899987642 11
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
-+..|+|+.+....+
T Consensus 82 ~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 82 FGSVDILVSNAGIQI 96 (262)
T ss_pred cCCCCEEEECCccCC
Confidence 145898887665543
No 343
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.64 E-value=11 Score=29.16 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=48.1
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
..+++||=+|.= ||.+...+... ..+|+.+|+.|.|-.... .+++|... +-+..+.+|+|+-.-
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp----------~~v~Fr~~----~~~~~G~~DlivDlT 107 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP----------NNVKFRNL----LKFIRGEVDLIVDLT 107 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC----------CCccHhhh----cCCCCCceeEEEecc
Confidence 478899999874 77766666533 678999999998633322 45666544 334568899999877
Q ss_pred ccccc
Q 027913 203 VLCSV 207 (217)
Q Consensus 203 ~l~~~ 207 (217)
.+.-+
T Consensus 108 GlGG~ 112 (254)
T COG4017 108 GLGGI 112 (254)
T ss_pred ccCCC
Confidence 66655
No 344
>PRK06720 hypothetical protein; Provisional
Probab=76.26 E-value=18 Score=26.96 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---------C-C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------V-S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---------~-~ 191 (217)
.++.+|-.|.+.|. ....++ ..+.+++.+|.+++.++...+.+...+ .++.++..|+.... . .
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~-~~G~~V~l~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLA-KQGAKVIVTDIDQESGQATVEEITNLG---GEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888877653 233343 456789999999887766655554444 35667788875432 0 1
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
-+..|+++.+..+..
T Consensus 91 ~G~iDilVnnAG~~~ 105 (169)
T PRK06720 91 FSRIDMLFQNAGLYK 105 (169)
T ss_pred cCCCCEEEECCCcCC
Confidence 146899988766544
No 345
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.18 E-value=5 Score=33.38 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||=+|+| .|..+..+++..+. +++++|.+++.++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 367888888875 34455566666666 69999999998887765
No 346
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.11 E-value=4.2 Score=36.17 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
++.+|+=+|+|. |..+...++..|..|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 789999999995 556666777778899999999998888776
No 347
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.95 E-value=16 Score=28.29 Aligned_cols=76 Identities=17% Similarity=-0.028 Sum_probs=47.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=+|+ +|.++..+++ ..+.+|++++.++...+...+.+... .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888885 5555444443 44778999999887666655544322 25778888876531 11
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+.+|+|+......
T Consensus 80 ~~~~d~vi~~ag~~ 93 (237)
T PRK07326 80 FGGLDVLIANAGVG 93 (237)
T ss_pred cCCCCEEEECCCCC
Confidence 13689888765443
No 348
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=75.90 E-value=4.6 Score=35.90 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=33.5
Q ss_pred CCCeEEEECCcCC-cchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 125 KAKKVLEIGIGTG-PNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
++.+||=+|+|.- ..+..+++..|..|+++|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6789999999954 55666666778889999999997776665
No 349
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.89 E-value=23 Score=27.99 Aligned_cols=79 Identities=9% Similarity=-0.091 Sum_probs=51.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 191 (217)
.++.+|=.|++.| +...+++ ..+.+|++++.+++-++...+.+.+.... .++.++..|+.+.. -.
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPG-ARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5678898887765 3333332 45778999999988777766665443211 35777888886642 01
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+++.+....
T Consensus 85 ~g~id~li~~Ag~~ 98 (265)
T PRK07062 85 FGGVDMLVNNAGQG 98 (265)
T ss_pred cCCCCEEEECCCCC
Confidence 24689998876653
No 350
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.57 E-value=16 Score=28.80 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=52.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ....+++ ..+.+|+.++.+++.++...+.+...+.. .++.++..|+.+.. + .
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAG-ARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678998887655 3333332 45778999999988887777666542111 46788888886532 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+.+|.++.+....
T Consensus 84 ~g~id~li~~ag~~ 97 (260)
T PRK07063 84 FGPLDVLVNNAGIN 97 (260)
T ss_pred hCCCcEEEECCCcC
Confidence 14689998876543
No 351
>PRK07677 short chain dehydrogenase; Provisional
Probab=75.55 E-value=15 Score=28.85 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=47.4
Q ss_pred CeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CCC
Q 027913 127 KKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDA 193 (217)
Q Consensus 127 ~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 193 (217)
+++|=.|++.|. +...++ ..|.+|++++.++..++...+.+...+ .++.++..|+.+.. + .-+
T Consensus 2 k~~lItG~s~giG~~ia~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFA-EEGANVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 577877776652 223333 457789999999887777666655443 46788888876531 0 114
Q ss_pred ceeEEEeccc
Q 027913 194 SVDAVVGTLV 203 (217)
Q Consensus 194 sfD~V~~~~~ 203 (217)
..|.|+.+..
T Consensus 78 ~id~lI~~ag 87 (252)
T PRK07677 78 RIDALINNAA 87 (252)
T ss_pred CccEEEECCC
Confidence 6899887654
No 352
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.35 E-value=18 Score=28.08 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|+ +|.++..+++ ..+.+|++++.+++-.+...+.+...+ .++.++..|+.+.. +.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG---VKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567888885 5555554443 457799999998876655544444333 46788888886542 11
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+......
T Consensus 82 ~~~id~vi~~ag~~ 95 (239)
T PRK07666 82 LGSIDILINNAGIS 95 (239)
T ss_pred cCCccEEEEcCccc
Confidence 13689998876543
No 353
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=75.03 E-value=7.5 Score=35.53 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913 126 AKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 126 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~ 200 (217)
..+|+=+|+|. |+.........+..++.+|.+++.++.+++. | ...+.+|..+.. ..-+..|+|++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g-----~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G-----MKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C-----CeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 45788888773 4444333345677899999999998888652 3 468889987753 12246777765
Q ss_pred c
Q 027913 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 471 ~ 471 (621)
T PRK03562 471 A 471 (621)
T ss_pred E
Confidence 3
No 354
>PRK08267 short chain dehydrogenase; Provisional
Probab=74.97 E-value=12 Score=29.47 Aligned_cols=73 Identities=12% Similarity=0.005 Sum_probs=47.3
Q ss_pred CeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC------C
Q 027913 127 KKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS------D 192 (217)
Q Consensus 127 ~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~------~ 192 (217)
+++|=.|++.|. ++..++ ..+.+|++++.+++.++...+... + .++.++..|+.+.. +. .
T Consensus 2 k~vlItGasg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~~~--~---~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA-AEGWRVGAYDINEAGLAALAAELG--A---GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhc--C---CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 357777776541 233343 457799999999887766655432 2 46788999987632 11 3
Q ss_pred CceeEEEeccccc
Q 027913 193 ASVDAVVGTLVLC 205 (217)
Q Consensus 193 ~sfD~V~~~~~l~ 205 (217)
+.+|+|+.+....
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 5789999876654
No 355
>PRK07890 short chain dehydrogenase; Provisional
Probab=74.77 E-value=18 Score=28.37 Aligned_cols=76 Identities=18% Similarity=0.089 Sum_probs=49.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| +...+++ ..+..|++++.++..++...+.+...+ .++.++..|+.+.. + .
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG---RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5678887776554 4433332 457799999999887766666655444 46788999886531 0 0
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999887654
No 356
>PRK06194 hypothetical protein; Provisional
Probab=74.74 E-value=15 Score=29.41 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|++.| .+..+++ ..|.+|+.+|.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG---AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567886665443 3333332 457789999999877766655554434 36788889886532 11
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
-+..|+|+.+..+..
T Consensus 81 ~g~id~vi~~Ag~~~ 95 (287)
T PRK06194 81 FGAVHLLFNNAGVGA 95 (287)
T ss_pred cCCCCEEEECCCCCC
Confidence 135799998776643
No 357
>PRK10458 DNA cytosine methylase; Provisional
Probab=74.54 E-value=11 Score=33.27 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=41.5
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
..+++|+=||.|.+...+-.....-+.++|+++.+.+.-+.+.... .....+..|+..+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~----p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD----PATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC----CccceeccChhhCc
Confidence 4599999999999888876544456789999998887777664211 12234456666553
No 358
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=74.37 E-value=13 Score=29.25 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=41.4
Q ss_pred eEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEec
Q 027913 128 KVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGT 201 (217)
Q Consensus 128 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~~ 201 (217)
+++=+|||. |......+...+..|+.+|.+++.++...... -....+++|..+.. ..-..+|+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-------~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-------LDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-------cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 466677773 33222222366789999999999777633310 24578888876642 233568888763
No 359
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.31 E-value=19 Score=28.60 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=47.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
+++++|=.|.+.| ....+++ ..+..|++++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~ilItGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSG-INLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 6778888886443 3333332 567889999999887766655554443 35677888886532 1 1
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
.+.+|+|+.+..
T Consensus 84 ~~~iD~vi~~ag 95 (264)
T PRK07576 84 FGPIDVLVSGAA 95 (264)
T ss_pred cCCCCEEEECCC
Confidence 146899987654
No 360
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.03 E-value=17 Score=28.26 Aligned_cols=74 Identities=15% Similarity=0.017 Sum_probs=45.4
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC--CCcee
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS--DASVD 196 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~--~~sfD 196 (217)
+++|=.|+. |.++..+++ ..|.+|++++.+++-.+...+.+...+- .++.++.+|+.+.. +. ...+|
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA--VAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 467777754 434444333 4577899999998766655444433321 47889999987642 11 12478
Q ss_pred EEEeccc
Q 027913 197 AVVGTLV 203 (217)
Q Consensus 197 ~V~~~~~ 203 (217)
.|+.+..
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 8886543
No 361
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.46 E-value=7.6 Score=33.28 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=47.8
Q ss_pred CeEEEECCcC-Ccch-HhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913 127 KKVLEIGIGT-GPNL-KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 127 ~~vLDiGcG~-G~~~-~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~ 200 (217)
++||=||||. |+.. ..+++....+|+..|-+.+..+++..... .+++..+.|+.+.+ +- ..+|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~------~~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG------GKVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc------ccceeEEecccChHHHHHHH-hcCCEEEE
Confidence 5789999963 3322 23343444799999999988777765531 36788888887763 11 34599887
Q ss_pred cccccc
Q 027913 201 TLVLCS 206 (217)
Q Consensus 201 ~~~l~~ 206 (217)
..-.++
T Consensus 75 ~~p~~~ 80 (389)
T COG1748 75 AAPPFV 80 (389)
T ss_pred eCCchh
Confidence 654443
No 362
>PRK07035 short chain dehydrogenase; Provisional
Probab=73.37 E-value=18 Score=28.26 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. +...++ ..|.+|++++.+++.++...+.+.+.+ .++.++..|+.+.. + .
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~-~~G~~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLA-QQGAHVIVSSRKLDGCQAVADAIVAAG---GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56788888887662 233343 457799999999887776666665544 35677888875532 0 0
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+..|+|+.+..
T Consensus 83 ~~~id~li~~ag 94 (252)
T PRK07035 83 HGRLDILVNNAA 94 (252)
T ss_pred cCCCCEEEECCC
Confidence 136899887664
No 363
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.17 E-value=21 Score=27.73 Aligned_cols=78 Identities=17% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.+++||=.|++ |.....+++ ..+.+|++++-++..+....+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45688877754 444444432 446789999999776666655555444 46788888886531 11
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
-+.+|.|+.......
T Consensus 81 ~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 81 FGRLDILVANAGIFP 95 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 136898887765543
No 364
>PRK05876 short chain dehydrogenase; Provisional
Probab=72.99 E-value=18 Score=28.99 Aligned_cols=77 Identities=13% Similarity=-0.006 Sum_probs=50.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ++..+++ ..|.+|+.+|.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5678887777655 3333332 457789999999887776665555444 35778888886532 0 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+.+..+.
T Consensus 81 ~g~id~li~nAg~~ 94 (275)
T PRK05876 81 LGHVDVVFSNAGIV 94 (275)
T ss_pred cCCCCEEEECCCcC
Confidence 14689998877653
No 365
>PRK08862 short chain dehydrogenase; Provisional
Probab=72.11 E-value=20 Score=27.97 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=50.8
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~ 192 (217)
.++++|=.|++.|. .+..++ ..|.+|+.++.+++.++...+.+.+.+ .++..+..|+.+.. + ..
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la-~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFA-RLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 56789989988874 334444 567889999999998887776665554 34566666665431 1 11
Q ss_pred -C-ceeEEEeccc
Q 027913 193 -A-SVDAVVGTLV 203 (217)
Q Consensus 193 -~-sfD~V~~~~~ 203 (217)
+ ..|+++.+..
T Consensus 80 ~g~~iD~li~nag 92 (227)
T PRK08862 80 FNRAPDVLVNNWT 92 (227)
T ss_pred hCCCCCEEEECCc
Confidence 3 7899988764
No 366
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=72.07 E-value=11 Score=29.04 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCeEEEECCcC-Ccc-hHhhhhCCCCeEEEecCC
Q 027913 125 KAKKVLEIGIGT-GPN-LKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~-~~~l~~~~~~~v~gvD~s 157 (217)
...+||=+|||. |.. +..|+.....+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 778999999993 543 445554444589999977
No 367
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=72.06 E-value=21 Score=25.67 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=28.5
Q ss_pred CCCeEEEECCcC-C-cchHhhhhCCCCeEEEecCCHHHHHHHHHHH
Q 027913 125 KAKKVLEIGIGT-G-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 125 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~ 168 (217)
.+++|+-+|+|. | .....+.+..+..++++|.+++..+...+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 578899999873 1 2233343332468999999988766555443
No 368
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.92 E-value=18 Score=31.31 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=41.6
Q ss_pred eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG 200 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~ 200 (217)
+|+=+|+ |..+..+++ ..+..++++|.+++.++.+++. ..++++.+|..... ..-..+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4666666 666655554 5578999999999987776642 13567778775432 11245777766
Q ss_pred c
Q 027913 201 T 201 (217)
Q Consensus 201 ~ 201 (217)
.
T Consensus 72 ~ 72 (453)
T PRK09496 72 V 72 (453)
T ss_pred e
Confidence 4
No 369
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=71.32 E-value=9.9 Score=29.41 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=44.8
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHH------HHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYA------QTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a------~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf 195 (217)
.++.+|+|+=.|.|++++-++. .+-..|++.-+.+...-.. +....+... .|++.+-.+.-.++ +.+..
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--aN~e~~~~~~~A~~-~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--ANVEVIGKPLVALG-APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--hhhhhhCCcccccC-CCCcc
Confidence 4889999999999999998875 2333677777665422111 111112222 35555555555554 44556
Q ss_pred eEEEecc
Q 027913 196 DAVVGTL 202 (217)
Q Consensus 196 D~V~~~~ 202 (217)
|++....
T Consensus 124 d~~~~~~ 130 (238)
T COG4798 124 DLVPTAQ 130 (238)
T ss_pred cccccch
Confidence 6666543
No 370
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.31 E-value=8.2 Score=30.24 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||-.|+|. |..+..+++..+.++++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4788999999985 666666777777899999999887777654
No 371
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=71.19 E-value=23 Score=28.09 Aligned_cols=77 Identities=19% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. .+..++ ..+.+++.++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~-~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYA-KAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 56788888887662 234444 457789999999887777766665544 36788889886531 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|.|+.+....
T Consensus 85 ~~~id~li~~ag~~ 98 (265)
T PRK07097 85 VGVIDILVNNAGII 98 (265)
T ss_pred CCCCCEEEECCCCC
Confidence 14689999877653
No 372
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.17 E-value=23 Score=27.67 Aligned_cols=79 Identities=20% Similarity=0.054 Sum_probs=50.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|. +|.+...+++ ..+.++++++.++...+...+.+...+ .++.++.+|+.+.. + .
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG---GKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567776665 4445544443 457789999999887776666555444 46788888886532 1 1
Q ss_pred CCceeEEEeccccccc
Q 027913 192 DASVDAVVGTLVLCSV 207 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~~ 207 (217)
.+.+|+|+.+....+.
T Consensus 79 ~~~~d~vi~~a~~~~~ 94 (258)
T PRK12429 79 FGGVDILVNNAGIQHV 94 (258)
T ss_pred cCCCCEEEECCCCCCC
Confidence 1358999876654433
No 373
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=71.13 E-value=22 Score=30.24 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=52.0
Q ss_pred CCCCeEEEECCcCCcchHhhhhCC-----CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---------
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAADT-----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------- 189 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------- 189 (217)
.++.+|||+.+..|.-+..+.+.. ...+++=|.++.-+...........- .++.+...|+...|
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccccccCch
Confidence 589999999999999887776521 23799999999877777777633222 45556666655544
Q ss_pred CCCCceeEEEe
Q 027913 190 VSDASVDAVVG 200 (217)
Q Consensus 190 ~~~~sfD~V~~ 200 (217)
.....||-|++
T Consensus 232 ~~~~~fDrVLv 242 (375)
T KOG2198|consen 232 KEQLKFDRVLV 242 (375)
T ss_pred hhhhhcceeEE
Confidence 12346888875
No 374
>PRK05866 short chain dehydrogenase; Provisional
Probab=71.02 E-value=21 Score=28.99 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ++..+++ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG---GDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888887655 3333332 457899999999887777666655444 35778888886532 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+.+....
T Consensus 115 ~g~id~li~~AG~~ 128 (293)
T PRK05866 115 IGGVDILINNAGRS 128 (293)
T ss_pred cCCCCEEEECCCCC
Confidence 24689999876543
No 375
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=70.97 E-value=17 Score=23.50 Aligned_cols=34 Identities=38% Similarity=0.459 Sum_probs=19.3
Q ss_pred CCCCeEEEECCcCCcch-Hhhhh--CCCCeEEEecCC
Q 027913 124 GKAKKVLEIGIGTGPNL-KYYAA--DTDVQVLGVDPN 157 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~-~~l~~--~~~~~v~gvD~s 157 (217)
..+++||=|||.+|+-+ ..++. ..+...+||...
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 35689999999999743 22332 456677777653
No 376
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.76 E-value=24 Score=27.47 Aligned_cols=74 Identities=19% Similarity=0.082 Sum_probs=46.8
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------C--CCC
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--SDA 193 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~--~~~ 193 (217)
+++|=.| |+|.+...+++ ..+..|++++.+++..+.........+ .++.++.+|+.+.. . ..+
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG---GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3566666 44555555443 456789999999877766665554433 46788888886542 0 124
Q ss_pred ceeEEEecccc
Q 027913 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~V~~~~~l 204 (217)
..|+|+.....
T Consensus 78 ~~d~vi~~a~~ 88 (255)
T TIGR01963 78 GLDILVNNAGI 88 (255)
T ss_pred CCCEEEECCCC
Confidence 57888876644
No 377
>PRK08339 short chain dehydrogenase; Provisional
Probab=70.75 E-value=25 Score=27.96 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=50.4
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~ 192 (217)
.++++|=.|++.|. .+..++ ..|.+|+.++.+++-++...+.+....- .++.++..|+.+.. + .-
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLA-RAGADVILLSRNEENLKKAREKIKSESN--VDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHHHhh
Confidence 56788888877662 233343 4577899999998877776665543311 36788888887642 1 11
Q ss_pred CceeEEEecccc
Q 027913 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~V~~~~~l 204 (217)
+..|+++.+...
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 468988876654
No 378
>PRK08643 acetoin reductase; Validated
Probab=70.69 E-value=25 Score=27.55 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CC
Q 027913 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SD 192 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~ 192 (217)
++++|=.|+..| ....+++ ..+.+|++++.+++.++.....+...+ .++.++..|+.+.. + .-
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 346776675544 4433332 457789999999887777766665444 46778888886642 1 11
Q ss_pred CceeEEEecccc
Q 027913 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~V~~~~~l 204 (217)
+..|.|+.+...
T Consensus 78 ~~id~vi~~ag~ 89 (256)
T PRK08643 78 GDLNVVVNNAGV 89 (256)
T ss_pred CCCCEEEECCCC
Confidence 468998876643
No 379
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.61 E-value=25 Score=27.55 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=50.4
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. ++..++ ..|.+++.++.+++-++...+.+...+ .++.++..|+.+.. + .
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFA-REGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45678877776552 233343 456789999999887777766665544 36788888886532 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+++.+...
T Consensus 81 ~~~id~li~~ag~ 93 (254)
T PRK07478 81 FGGLDIAFNNAGT 93 (254)
T ss_pred cCCCCEEEECCCC
Confidence 1468999877754
No 380
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.61 E-value=24 Score=27.75 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=47.3
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----CC
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----DA 193 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----~~ 193 (217)
+++|=.|+. |.++..+++ ..+.+|++++.++...+...+.+...+ .++.++..|+.+.. +. -+
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG---GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457766654 334444332 456789999999877666655554444 46788888886642 00 13
Q ss_pred ceeEEEecccccc
Q 027913 194 SVDAVVGTLVLCS 206 (217)
Q Consensus 194 sfD~V~~~~~l~~ 206 (217)
..|.|+.+.....
T Consensus 78 ~id~vi~~ag~~~ 90 (263)
T PRK06181 78 GIDILVNNAGITM 90 (263)
T ss_pred CCCEEEECCCccc
Confidence 5799987765433
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.45 E-value=24 Score=27.34 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=49.4
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++ |.....+++ ..+.++++++.+++.++...+.+...+ .++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46778877754 444444433 456789999998887776666555444 46888899987542 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468998876644
No 382
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=70.39 E-value=24 Score=27.71 Aligned_cols=76 Identities=16% Similarity=0.036 Sum_probs=50.6
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 191 (217)
.+++||=+|++.|. +...++ ..+.+++.++.+++.++.....+...+ .++.++..|+.+.. -.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~-~~G~~vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999977662 233343 457789999988887776665555444 36778888886542 01
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|.|+.+...
T Consensus 86 ~~~~d~li~~ag~ 98 (255)
T PRK06113 86 LGKVDILVNNAGG 98 (255)
T ss_pred cCCCCEEEECCCC
Confidence 1468999887654
No 383
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=70.23 E-value=18 Score=29.76 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|+..| ....+++ ..+.+|++++.+++..+.+.+.+...+ .++.++..|+.+.. + .
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP---DSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC---CceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4667888887654 3333332 456789999988876665555443222 46788888886642 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
.+..|+|+.+..+
T Consensus 81 ~~~iD~li~nAg~ 93 (322)
T PRK07453 81 GKPLDALVCNAAV 93 (322)
T ss_pred CCCccEEEECCcc
Confidence 1358999987764
No 384
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.02 E-value=18 Score=28.06 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=48.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=+|++.| +...+++ ..+..+++++.++..++.+.+.+...+ .++.++..|+.+.. +.
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678898886444 3333322 456789999999887776666655444 46788888875431 00
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+.+|.|+.+..
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 146899988664
No 385
>PRK12829 short chain dehydrogenase; Provisional
Probab=69.71 E-value=28 Score=27.27 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=47.0
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++ |.+...+++ ..+.+|++++.+++.++...+...+ .++.++.+|+.+.. +.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----AKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 77899988876 444444333 4577899999988766655443321 24577888876532 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|.|+.....
T Consensus 84 ~~~~d~vi~~ag~ 96 (264)
T PRK12829 84 FGGLDVLVNNAGI 96 (264)
T ss_pred hCCCCEEEECCCC
Confidence 1368999876643
No 386
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.67 E-value=8.5 Score=31.51 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||..|+| .|..+..+++..+.++++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 467788888876 3777778887778889999999998887754
No 387
>PRK06196 oxidoreductase; Provisional
Probab=69.66 E-value=26 Score=28.66 Aligned_cols=72 Identities=10% Similarity=0.047 Sum_probs=46.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|++.| ++..+++ ..+.+|++++.+++.++...+.+ .++.++.+|+.+.. + .
T Consensus 25 ~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-------~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 25 SGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDVAREALAGI-------DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 5678888886544 4444443 45778999999887665554433 23578888887642 0 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
.+..|+|+.+..+
T Consensus 97 ~~~iD~li~nAg~ 109 (315)
T PRK06196 97 GRRIDILINNAGV 109 (315)
T ss_pred CCCCCEEEECCCC
Confidence 2568999987754
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.46 E-value=28 Score=30.57 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHH-HHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRK-MEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
.+++|+=||.| .|.-+..++...|.+|+++|.++. ......+.+++.|+ ++..++.... ...+|+|+..-
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv-----~~~~~~~~~~---~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA-----TVRLGPGPTL---PEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC-----EEEECCCccc---cCCCCEEEECC
Confidence 56789999998 444333333466789999996653 33333444555553 4555443222 23589888766
Q ss_pred ccc
Q 027913 203 VLC 205 (217)
Q Consensus 203 ~l~ 205 (217)
.+.
T Consensus 87 Gi~ 89 (480)
T PRK01438 87 GWR 89 (480)
T ss_pred CcC
Confidence 554
No 389
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=68.96 E-value=30 Score=26.86 Aligned_cols=76 Identities=21% Similarity=0.132 Sum_probs=48.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++.| ....+++ ..+.+|++++.++...+...+.+...+ .++.++..|+.+.. +.
T Consensus 2 ~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG---GNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4567888886543 3333332 456789999999887776666655443 46888889886532 10
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 78 ~~~~d~vi~~ag~ 90 (250)
T TIGR03206 78 LGPVDVLVNNAGW 90 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1357888776643
No 390
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.83 E-value=7.4 Score=32.95 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=40.4
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeE---EEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQV---LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
+..-.+|+|||-|.++.+++. .....+ +.+|-...-++.-++...... ..+.-+..|++++
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~---~vi~R~riDI~dL 246 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS---LVIKRIRIDIEDL 246 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc---chhheeEeeHHhc
Confidence 336899999999999999875 222334 448887776666665544432 2455666676665
No 391
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.73 E-value=30 Score=26.66 Aligned_cols=74 Identities=22% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
++++||=.|++.| ....+++ ..+.+|++++-+++-++...+..... .++.++..|+.+.. ++
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678999988644 3333332 45779999999988776655444332 25788888886532 00
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+.+|.|+.+..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 134687776654
No 392
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=68.72 E-value=10 Score=31.52 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
++.+|.=||.| -|.....++-..+..|+.+|+|.+-+++....+. .++..+......+.-.-...|+||..-.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 45678888888 5778888887889999999999887777666542 3566666665555433346788876555
Q ss_pred ccccCCh
Q 027913 204 LCSVKDV 210 (217)
Q Consensus 204 l~~~~d~ 210 (217)
+.--..|
T Consensus 241 IpgakaP 247 (371)
T COG0686 241 IPGAKAP 247 (371)
T ss_pred ecCCCCc
Confidence 4444444
No 393
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=68.32 E-value=27 Score=27.23 Aligned_cols=77 Identities=16% Similarity=0.052 Sum_probs=47.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C-
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V- 190 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~- 190 (217)
+++++|=.|+.. .++..+++ ..+.+|++++.+.+.++...+.+.+.+. .++.++..|+.... +
T Consensus 11 ~~k~vlItG~~g-~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTGAGD-GIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG--PQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEecccCCCHHHHHHHHHHHH
Confidence 677899888644 44443332 3467999999998777666555544432 35667777764210 0
Q ss_pred -CCCceeEEEecccc
Q 027913 191 -SDASVDAVVGTLVL 204 (217)
Q Consensus 191 -~~~sfD~V~~~~~l 204 (217)
.-+..|.|+.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 11468988876543
No 394
>PRK07774 short chain dehydrogenase; Provisional
Probab=68.16 E-value=32 Score=26.77 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-C---------C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V---------S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~---------~ 191 (217)
.++++|=.|+ +|..+..+++ ..+.++++++.++...+...+.+...+ .++.++..|+.+.. . .
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG---GTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4567887775 3444444443 457889999998876665555544333 35677888887542 0 0
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 1358999987764
No 395
>PRK08251 short chain dehydrogenase; Provisional
Probab=68.16 E-value=32 Score=26.75 Aligned_cols=78 Identities=9% Similarity=-0.102 Sum_probs=48.9
Q ss_pred CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCC
Q 027913 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD 192 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~ 192 (217)
++++|=.|+. |.++..+++ ..+.+++.++.+++.++...+.+...... .++.++..|+.+.. -.-
T Consensus 2 ~k~vlItGas-~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGAS-SGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPG-IKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567777754 445444443 34678999999988777666555433211 46788888887642 012
Q ss_pred CceeEEEeccccc
Q 027913 193 ASVDAVVGTLVLC 205 (217)
Q Consensus 193 ~sfD~V~~~~~l~ 205 (217)
+..|.|+.+..+.
T Consensus 80 ~~id~vi~~ag~~ 92 (248)
T PRK08251 80 GGLDRVIVNAGIG 92 (248)
T ss_pred CCCCEEEECCCcC
Confidence 4588888876543
No 396
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=67.80 E-value=32 Score=26.50 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=48.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
++++||=.|+ +|.....+++ ..+..+++++-++...+.....+...+ .++.++..|+.+.. +.
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG---GEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567887776 4555544443 446789999999877766555555444 46788888886531 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|.|+.....
T Consensus 80 ~~~id~vi~~ag~ 92 (246)
T PRK05653 80 FGALDILVNNAGI 92 (246)
T ss_pred hCCCCEEEECCCc
Confidence 1356888876544
No 397
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.25 E-value=28 Score=28.98 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=51.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+++||=.|++.| +...+++ ..+.+|+.++.+++.++...+.+...+ .++.++..|+.+.. + .
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4567888887555 3333322 457789999999988877777666555 46788888886532 0 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 1468999877654
No 398
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=67.07 E-value=24 Score=28.13 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=46.2
Q ss_pred CCeEEEECCcCCcchHhhhhCC-------CC---eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc------
Q 027913 126 AKKVLEIGIGTGPNLKYYAADT-------DV---QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------ 189 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~-------~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~------ 189 (217)
-++++|+.+..|.++..+.+.. +. .+++||+-+- .+..-|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-------------aPI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-------------APIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-------------CccCceEEeecccCCHhHHHHHH
Confidence 4689999999999987776521 11 3999998542 12245778888987642
Q ss_pred --CCCCceeEEEeccc
Q 027913 190 --VSDASVDAVVGTLV 203 (217)
Q Consensus 190 --~~~~sfD~V~~~~~ 203 (217)
|.....|+|+|-.+
T Consensus 109 ~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGA 124 (294)
T ss_pred HHhCCCCccEEEeCCC
Confidence 66678999998553
No 399
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=67.03 E-value=18 Score=30.34 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=43.4
Q ss_pred CCCeEEEECCc-CCc-chHhhhhCCCCeEEEecCCH---------------------HHHHHHHHHHHHcCCCCCCeEEE
Q 027913 125 KAKKVLEIGIG-TGP-NLKYYAADTDVQVLGVDPNR---------------------KMEKYAQTAAVAAGLPLTNFKFL 181 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~-~~~~l~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~v~~~ 181 (217)
...+||=|||| .|. .+.+|+...-.+++.+|... .-.+.+++++.+.... -+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~-v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSD-VRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCC-cEEEEE
Confidence 77899999999 344 44555544445899999863 2234455555544321 234555
Q ss_pred ecccccc---cCCCCceeEEEec
Q 027913 182 QAVGEAI---PVSDASVDAVVGT 201 (217)
Q Consensus 182 ~~d~~~l---~~~~~sfD~V~~~ 201 (217)
..++..- .+ -..||+|+..
T Consensus 102 ~~~~~~~~~~~~-~~~~DlVid~ 123 (339)
T PRK07688 102 VQDVTAEELEEL-VTGVDLIIDA 123 (339)
T ss_pred eccCCHHHHHHH-HcCCCEEEEc
Confidence 5444321 11 1458999875
No 400
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=66.90 E-value=33 Score=26.70 Aligned_cols=33 Identities=27% Similarity=0.093 Sum_probs=23.1
Q ss_pred CCCeEEEECCcC-Cc-chHhhhhCCCCeEEEecCC
Q 027913 125 KAKKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s 157 (217)
...+|+=||||. |. .+..++...-.+++.+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 778999999983 54 4455554444568888887
No 401
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.59 E-value=10 Score=31.57 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||=+|+|. |..+..+++..+.+++++|.+++.++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4788999999864 556666777677789999999998887754
No 402
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=66.22 E-value=18 Score=30.10 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=42.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCcee
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD 196 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD 196 (217)
++++||=.| |+|..+..+++ ..+.+|++++.++........... .+ .++.++.+|+.+.. +....+|
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LA---KKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hc---CCceEEEccCCCHHHHHHHHhhcCCC
Confidence 456788777 44444444443 457789999877653322222111 11 35678888886542 2233578
Q ss_pred EEEecccc
Q 027913 197 AVVGTLVL 204 (217)
Q Consensus 197 ~V~~~~~l 204 (217)
+|+.....
T Consensus 78 ~vih~A~~ 85 (349)
T TIGR02622 78 IVFHLAAQ 85 (349)
T ss_pred EEEECCcc
Confidence 88866553
No 403
>PRK09072 short chain dehydrogenase; Provisional
Probab=66.02 E-value=31 Score=27.19 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~ 192 (217)
+++++|=.|++.|. ++..++ ..|.+|++++.+++.++.....+ ..+ .++.++..|+.+.. + .-
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~-~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALA-AAGARLLLVGRNAEKLEALAARL-PYP---GRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHH-hcC---CceEEEEccCCCHHHHHHHHHHHHhc
Confidence 45678888876542 233343 45788999999988776665544 222 47888888886642 0 12
Q ss_pred CceeEEEecccccc
Q 027913 193 ASVDAVVGTLVLCS 206 (217)
Q Consensus 193 ~sfD~V~~~~~l~~ 206 (217)
+..|.|+.+.....
T Consensus 79 ~~id~lv~~ag~~~ 92 (263)
T PRK09072 79 GGINVLINNAGVNH 92 (263)
T ss_pred CCCCEEEECCCCCC
Confidence 46799988765543
No 404
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=65.93 E-value=36 Score=26.46 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. ++..++ ..|.+|++++.++. +...+.+.+.+ .++.++..|+.+.. + .
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~-~~G~~vi~~~r~~~--~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLA-EAGADIVGAGRSEP--SETQQQVEALG---RRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCchH--HHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788988986652 233343 45778999997652 33333333333 46788888886542 0 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+|+.+....
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 14689998876553
No 405
>PRK05855 short chain dehydrogenase; Validated
Probab=65.89 E-value=33 Score=30.44 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=52.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.+.++|=+|+..| ++..+++ ..|.+|+.++.++..++...+.+...+ .++.++..|+.+.. + .
T Consensus 314 ~~~~~lv~G~s~g-iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSG-IGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4567887777444 4433332 457789999999887777766665555 46788889987642 1 1
Q ss_pred CCceeEEEecccccc
Q 027913 192 DASVDAVVGTLVLCS 206 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~ 206 (217)
.+..|+++.+..+.+
T Consensus 390 ~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 390 HGVPDIVVNNAGIGM 404 (582)
T ss_pred cCCCcEEEECCccCC
Confidence 246899998876644
No 406
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=65.61 E-value=17 Score=28.75 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=36.2
Q ss_pred HHHHHHhcC-CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH
Q 027913 116 SQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV 169 (217)
Q Consensus 116 ~~i~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~ 169 (217)
..|.+.++. ...+++|.=||+|..+..+.. .+..++.-|+++..+...+..++
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence 344555543 688999999999999888753 67789999999988887775544
No 407
>PRK06125 short chain dehydrogenase; Provisional
Probab=65.40 E-value=39 Score=26.55 Aligned_cols=77 Identities=14% Similarity=0.013 Sum_probs=49.9
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-CCCce
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-SDASV 195 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-~~~sf 195 (217)
.++++|=.|++.| +...+++ ..+.+|++++.+++.++...+.+....- .++.++..|+.+.. + .-+..
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCCC
Confidence 5678888887555 3333332 4567999999998877776665544321 46778888886531 1 12568
Q ss_pred eEEEecccc
Q 027913 196 DAVVGTLVL 204 (217)
Q Consensus 196 D~V~~~~~l 204 (217)
|.++.+...
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 998887654
No 408
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=65.21 E-value=7.1 Score=29.72 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.1
Q ss_pred CCCCeEEEecCCHHHHHHHH
Q 027913 146 DTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 146 ~~~~~v~gvD~s~~~l~~a~ 165 (217)
..|.+|+|+|++++.++..+
T Consensus 21 ~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 21 EKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp HTTSEEEEE-S-HHHHHHHH
T ss_pred hCCCEEEEEeCChHHHHHHh
Confidence 66899999999999777765
No 409
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=65.03 E-value=22 Score=29.90 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=44.2
Q ss_pred CCCeEEEECCc-CCc-chHhhhhCCCCeEEEecCCH---------------------HHHHHHHHHHHHcCCCCCCeEEE
Q 027913 125 KAKKVLEIGIG-TGP-NLKYYAADTDVQVLGVDPNR---------------------KMEKYAQTAAVAAGLPLTNFKFL 181 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~-~~~~l~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~v~~~ 181 (217)
...+||=|||| .|. .+..|+...-.+++.+|... .-++.+++++.+.... -+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~-v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE-VEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC-cEEEEE
Confidence 67899999999 344 34555544335899999874 2334555666554422 345555
Q ss_pred eccccc--ccCCCCceeEEEec
Q 027913 182 QAVGEA--IPVSDASVDAVVGT 201 (217)
Q Consensus 182 ~~d~~~--l~~~~~sfD~V~~~ 201 (217)
..++.. +.---..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEc
Confidence 555432 11001458998865
No 410
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.94 E-value=34 Score=27.23 Aligned_cols=76 Identities=18% Similarity=0.018 Sum_probs=49.8
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|++.|. ....++ ..+.+|+.++.+++..+...+.+...+ .++.++..|+.+.. +.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELA-RAGAKVAILDRNQEKAEAVVAEIKAAG---GEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788888876552 233333 457789999999877766666555444 36788888886532 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+++.+...
T Consensus 85 ~g~id~li~~ag~ 97 (278)
T PRK08277 85 FGPCDILINGAGG 97 (278)
T ss_pred cCCCCEEEECCCC
Confidence 1468999887654
No 411
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=64.66 E-value=76 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHhcCCCCeEEEECCc-CCcc-hHhhhhCCCCeEEEecCC
Q 027913 118 LFDNLRGKAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 118 i~~~~~~~~~~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD~s 157 (217)
-.+++ ...+|+=+||| .|.. +..|++..-.+++.+|..
T Consensus 24 ~~~kL--~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 24 ALQLF--ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHHHh--cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34555 78899999999 4554 444554443678888865
No 412
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.57 E-value=12 Score=28.35 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=26.3
Q ss_pred EEEECCcCCc--chHhhhhCCCCeEEEecCCHHHHHHHHHHHHH
Q 027913 129 VLEIGIGTGP--NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA 170 (217)
Q Consensus 129 vLDiGcG~G~--~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~ 170 (217)
|-=||+|+-. ++..++ ..|.+|+.+|.+++.++.+++.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHH
Confidence 4456776432 222232 4588999999999999888877654
No 413
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=64.39 E-value=10 Score=36.86 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCCeEEEECCc-CCc-chHhhhhCCCC-------------eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc--
Q 027913 125 KAKKVLEIGIG-TGP-NLKYYAADTDV-------------QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-- 187 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~-~~~~l~~~~~~-------------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-- 187 (217)
..++|+=|||| .|. ++..+++.++. .|+..|++++..+.+.+.. .+++.+..|+.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-------ENAEAVQLDVSDSE 640 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-------CCCceEEeecCCHH
Confidence 46689999998 354 45555554443 3889999987655544432 244455555443
Q ss_pred -ccCCCCceeEEEecccc
Q 027913 188 -IPVSDASVDAVVGTLVL 204 (217)
Q Consensus 188 -l~~~~~sfD~V~~~~~l 204 (217)
+.-.-...|+|++..-.
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 32110349999876543
No 414
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.37 E-value=17 Score=31.53 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
.++++|+=+|+|. |.....+++..|.+|+++|.++.-...|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 3789999999996 445555556777899999999887666654
No 415
>PRK08589 short chain dehydrogenase; Validated
Probab=64.36 E-value=32 Score=27.39 Aligned_cols=76 Identities=17% Similarity=0.063 Sum_probs=48.0
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. .+..++ ..+.+|++++.+ +.++...+.+.+.+ .++.++..|+.+.. + .
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 56788888877652 233344 457889999998 54555444444433 36788888876531 0 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+++.+..+.
T Consensus 80 ~g~id~li~~Ag~~ 93 (272)
T PRK08589 80 FGRVDVLFNNAGVD 93 (272)
T ss_pred cCCcCEEEECCCCC
Confidence 14689998877553
No 416
>PRK06914 short chain dehydrogenase; Provisional
Probab=64.32 E-value=31 Score=27.51 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-C--------CCC
Q 027913 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-V--------SDA 193 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~--------~~~ 193 (217)
++++|=.|++.| .+..+++ ..+.+|++++-+++.++...+.....+.. .++.++.+|+.+.. + .-+
T Consensus 3 ~k~~lItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSG-FGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQ-QNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 456788886544 3333322 45788999998887766665554443332 46888888886642 0 114
Q ss_pred ceeEEEecccc
Q 027913 194 SVDAVVGTLVL 204 (217)
Q Consensus 194 sfD~V~~~~~l 204 (217)
..|.|+.+...
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 57888876544
No 417
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=64.23 E-value=58 Score=26.44 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CC--
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VS-- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~-- 191 (217)
.++++|=-|+-.|- ++..++ ..+.+++.+--+++-++..++.+.+..- -.++++..|+.+.. +.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA-~~g~~liLvaR~~~kL~~la~~l~~~~~--v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLA-RRGYNLILVARREDKLEALAKELEDKTG--VEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCcHHHHHHHHHHHHHhhC--ceEEEEECcCCChhHHHHHHHHHHhc
Confidence 45678888887773 344444 5678999999999999888877765431 36889999987643 11
Q ss_pred CCceeEEEecccccccCC
Q 027913 192 DASVDAVVGTLVLCSVKD 209 (217)
Q Consensus 192 ~~sfD~V~~~~~l~~~~d 209 (217)
...+|+.|.+..+-+...
T Consensus 82 ~~~IdvLVNNAG~g~~g~ 99 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGP 99 (265)
T ss_pred CCcccEEEECCCcCCccc
Confidence 147999999988877653
No 418
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=64.12 E-value=39 Score=26.47 Aligned_cols=77 Identities=14% Similarity=-0.034 Sum_probs=46.4
Q ss_pred CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CC
Q 027913 126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SD 192 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~ 192 (217)
+++||=.|++. .....+++ ..+..++.+|.++..++...+.+....-. .++.++..|+.+.. + .-
T Consensus 2 ~k~ilItG~~~-~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQ-TLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGE-GMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCC-ceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35678888654 34333332 45778999999987766655544332110 25788888886531 0 11
Q ss_pred CceeEEEecccc
Q 027913 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~V~~~~~l 204 (217)
+..|.|+.+...
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 467988876654
No 419
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=63.37 E-value=22 Score=23.71 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=26.0
Q ss_pred ECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913 132 IGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL 202 (217)
Q Consensus 132 iGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 202 (217)
+-||+|.-+..++ ....++.+++.|+ .+++...++..++-....+|+|+..-
T Consensus 7 vvCgsG~~TS~m~----------------~~ki~~~l~~~gi---~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 7 VACGGAVATSTMA----------------AEEIKELCQSHNI---PVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EECCCchhHHHHH----------------HHHHHHHHHHCCC---eEEEEEecHHHHhhhcCCCCEEEECC
Confidence 5688886444332 2334444455554 34555555544431113466666654
No 420
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=63.26 E-value=44 Score=26.12 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=49.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| ++..+++ ..+.+++.++.++..++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~~lItGas~g-iG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 8 AGKNILITGSAQG-IGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG---IKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5678888886655 3333332 457799999999887776666555443 35677788876531 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987754
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=63.03 E-value=9.6 Score=32.44 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=30.6
Q ss_pred CCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
++.+|+=+|+| .|..+...+...+.+|+++|.+++.++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 56779999888 4555555555677789999999876655544
No 422
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=62.83 E-value=3.3 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.2
Q ss_pred EEEECCcCCcchHhhh
Q 027913 129 VLEIGIGTGPNLKYYA 144 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~ 144 (217)
-+|||||.|.......
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 4799999998765544
No 423
>PRK05650 short chain dehydrogenase; Provisional
Probab=62.72 E-value=40 Score=26.73 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=47.3
Q ss_pred eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CCCc
Q 027913 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDAS 194 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~s 194 (217)
+||=.|+..| ++..+++ ..+.+|+.++.+.+-++.....+...+ .++.++..|+.+.. + .-+.
T Consensus 2 ~vlVtGasgg-IG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITGAASG-LGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG---GDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred EEEEecCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5676665444 4434332 457789999999887766666555544 46788888886532 1 1146
Q ss_pred eeEEEeccccc
Q 027913 195 VDAVVGTLVLC 205 (217)
Q Consensus 195 fD~V~~~~~l~ 205 (217)
+|.|+.+....
T Consensus 78 id~lI~~ag~~ 88 (270)
T PRK05650 78 IDVIVNNAGVA 88 (270)
T ss_pred CCEEEECCCCC
Confidence 89998876543
No 424
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=62.35 E-value=61 Score=26.25 Aligned_cols=82 Identities=11% Similarity=-0.013 Sum_probs=60.2
Q ss_pred CCCeEEEECCcCCcc---hHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913 125 KAKKVLEIGIGTGPN---LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~---~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 191 (217)
.++.+|--|.+.|.- ...|+ ..|.+|+..+.+++.++...+.....+....++..+..|+..-+ ..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la-~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLA-KAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 678888888888842 33444 67889999999999998888877666553357888999986532 12
Q ss_pred -CCceeEEEeccccccc
Q 027913 192 -DASVDAVVGTLVLCSV 207 (217)
Q Consensus 192 -~~sfD~V~~~~~l~~~ 207 (217)
.+..|+++.+......
T Consensus 86 ~~GkidiLvnnag~~~~ 102 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGL 102 (270)
T ss_pred hCCCCCEEEEcCCcCCC
Confidence 4789999987765543
No 425
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=61.92 E-value=48 Score=25.42 Aligned_cols=76 Identities=16% Similarity=0.071 Sum_probs=40.8
Q ss_pred CCCeEEEECCcC-Cc-chHhhhhCCCCeEEEecCCH-------------------HHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPNR-------------------KMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
...+||=+|||. |. .+..|+...-.+++.+|... .-.+.+++++++.... -+++....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~-v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR-VKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC-CEEEEEec
Confidence 677899999984 32 34444434445788887552 1234455555554422 23444433
Q ss_pred cccccc--CCCCceeEEEecc
Q 027913 184 VGEAIP--VSDASVDAVVGTL 202 (217)
Q Consensus 184 d~~~l~--~~~~sfD~V~~~~ 202 (217)
.+.+.. + -..||+|++..
T Consensus 99 ~~~~~~~~~-~~~~dvVi~~~ 118 (197)
T cd01492 99 DISEKPEEF-FSQFDVVVATE 118 (197)
T ss_pred CccccHHHH-HhCCCEEEECC
Confidence 332211 1 14799999753
No 426
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=61.79 E-value=16 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCeEEEECCcC-CcchHhhhhC-CCCeEEEecCCHHHHHHHHHHH
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~ 168 (217)
++.+|+=+|||. |.++..+++. ....++.+|.+++-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 444899999995 5555666654 4468999999999999999854
No 427
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.49 E-value=52 Score=26.08 Aligned_cols=71 Identities=21% Similarity=0.117 Sum_probs=46.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHH-HHHHHHHHHHHcCCCCCCeEEEecccccc-----------c
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRK-MEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----------P 189 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-----------~ 189 (217)
.++.||=.||..|.....+++ +.|.+|++.--+-+ |-+.+. +.|+ .....|+.+- .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~----~~gl-----~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI----QFGL-----KPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH----hhCC-----eeEEeccCChHHHHHHHHHHhh
Confidence 678899999999988877775 55778887765543 333332 2344 3444444331 2
Q ss_pred CCCCceeEEEecccc
Q 027913 190 VSDASVDAVVGTLVL 204 (217)
Q Consensus 190 ~~~~sfD~V~~~~~l 204 (217)
+++++.|+.+.+..-
T Consensus 77 ~~~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAGQ 91 (289)
T ss_pred CCCCceEEEEcCCCC
Confidence 578999999876643
No 428
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=60.81 E-value=47 Score=25.86 Aligned_cols=73 Identities=16% Similarity=-0.000 Sum_probs=45.1
Q ss_pred eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CCCc
Q 027913 128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDAS 194 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~s 194 (217)
++|=.|+. |.....+++ ..+..++.++.++..++...+.+...+ .++.++.+|+.+.. + .-+.
T Consensus 2 ~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGA-QGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG---GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46666754 444444332 457789999988876666655555444 46788888876532 0 1135
Q ss_pred eeEEEecccc
Q 027913 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~V~~~~~l 204 (217)
.|.|+.+...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 7888876644
No 429
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.56 E-value=27 Score=29.59 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCCeEEEECCcC-Cc-chHhhhhCCCCeEEEecCCH-------------------HHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPNR-------------------KMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
...+||=+|||. |. .+..|+...-.+++.+|... .-.+.+++++.+.... -+++.+..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEEEEEe
Confidence 678999999994 43 44555544445677777654 4455666777665432 23444333
Q ss_pred ccccc---cCCCCceeEEEec
Q 027913 184 VGEAI---PVSDASVDAVVGT 201 (217)
Q Consensus 184 d~~~l---~~~~~sfD~V~~~ 201 (217)
.+..- .+- ..||+|+..
T Consensus 106 ~i~~~~~~~~~-~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNALDEL-RDADVILDG 125 (355)
T ss_pred ecCHHHHHHHH-hCCCEEEEC
Confidence 33221 111 469999875
No 430
>PRK09242 tropinone reductase; Provisional
Probab=59.97 E-value=36 Score=26.66 Aligned_cols=78 Identities=13% Similarity=-0.031 Sum_probs=50.3
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~ 191 (217)
.++++|=.|++.|. +...++ ..+.+|+.++.+++.++...+.+...... .++.++..|+.+.. -.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFL-GLGADVLIVARDADALAQARDELAEEFPE-REVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhhCCC-CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57788988886552 233333 45778999999988777666665443111 46788888886531 01
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|.|+.....
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2468998877754
No 431
>PRK05599 hypothetical protein; Provisional
Probab=59.75 E-value=45 Score=26.11 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=47.8
Q ss_pred eEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCCCc
Q 027913 128 KVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSDAS 194 (217)
Q Consensus 128 ~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~s 194 (217)
++|=.|++.|. ++..++ . +.+|+.++.+++.++...+.+.+.+- .++.++..|+.+.. -.-+.
T Consensus 2 ~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGA--TSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccC--CceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 56777777662 233343 3 68899999998888777776665442 24678888876632 01257
Q ss_pred eeEEEecccc
Q 027913 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~V~~~~~l 204 (217)
.|+++.+...
T Consensus 78 id~lv~nag~ 87 (246)
T PRK05599 78 ISLAVVAFGI 87 (246)
T ss_pred CCEEEEecCc
Confidence 8999876654
No 432
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.43 E-value=1.7 Score=32.17 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=39.1
Q ss_pred eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccccc
Q 027913 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV 207 (217)
Q Consensus 128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~ 207 (217)
-.+-||||.=.+ .+++..+-++-.+ .+.+++-.....+|.+++.|+|++.++++|+
T Consensus 5 ~kv~ig~G~~r~------npgWi~~d~ed~~------------------~vdlvc~As~e~~F~dns~d~iyaeHvlEHl 60 (185)
T COG4627 5 EKVKIGAGGKRV------NPGWIITDVEDRP------------------EVDLVCRASNESMFEDNSVDAIYAEHVLEHL 60 (185)
T ss_pred eEEEEecccccc------CCCceeeehhccc------------------ccchhhhhhhhccCCCcchHHHHHHHHHHHH
Confidence 357788886532 3455544443322 2344444445567999999999999999999
Q ss_pred CChh
Q 027913 208 KDVD 211 (217)
Q Consensus 208 ~d~~ 211 (217)
...+
T Consensus 61 t~~E 64 (185)
T COG4627 61 TYDE 64 (185)
T ss_pred hHHH
Confidence 7543
No 433
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=59.07 E-value=27 Score=28.57 Aligned_cols=78 Identities=14% Similarity=0.030 Sum_probs=44.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CC--CCceeEE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~--~~sfD~V 198 (217)
.+++||=.| |+|..+..+++ ..+.+|++++.++.............+.. .+++++.+|+.+.. +. -..+|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAK-ERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCC-CceEEEeCCCCCchHHHHHHcCCCEE
Confidence 457788877 45655555443 45678877766654333332222111221 46889999987643 10 0247888
Q ss_pred Eecccc
Q 027913 199 VGTLVL 204 (217)
Q Consensus 199 ~~~~~l 204 (217)
+.....
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 876654
No 434
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=58.96 E-value=40 Score=26.55 Aligned_cols=72 Identities=15% Similarity=-0.023 Sum_probs=46.6
Q ss_pred eEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CCCc
Q 027913 128 KVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDAS 194 (217)
Q Consensus 128 ~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~s 194 (217)
++|=.|++.|. ++..++ ..|.+|+.++.+++.++.+.+.+.+. .++.++..|+.+.. + .-+.
T Consensus 2 ~vlItGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELL-KKGARVVISSRNEENLEKALKELKEY----GEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 56777766552 233343 45678999999988877776666443 25678888876531 1 1246
Q ss_pred eeEEEecccc
Q 027913 195 VDAVVGTLVL 204 (217)
Q Consensus 195 fD~V~~~~~l 204 (217)
.|+++.+...
T Consensus 77 id~li~naG~ 86 (259)
T PRK08340 77 IDALVWNAGN 86 (259)
T ss_pred CCEEEECCCC
Confidence 8999887654
No 435
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=58.56 E-value=45 Score=26.18 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=47.2
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|++.|. ....++ ..|.+++.++.+ ...+.+.+...+.+ .++.++..|+.+.. +.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~-~~G~~v~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALA-KAGADIIITTHG-TNWDETRRLIEKEG---RKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCC-cHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67889988887662 233343 457788888887 33444444444433 46788888887642 10
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|.++.+...
T Consensus 89 ~g~id~li~~ag~ 101 (258)
T PRK06935 89 FGKIDILVNNAGT 101 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1368998876654
No 436
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=58.48 E-value=16 Score=28.71 Aligned_cols=76 Identities=22% Similarity=0.152 Sum_probs=42.0
Q ss_pred CCCeEEEECCc-CCcc-hHhhhhCCCCeEEEec-------------------CCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVD-------------------PNRKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD-------------------~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
...+|+=+||| .|.. +..|+...-.+++.+| +-..-.+.+++++++.... -+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-VEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-CEEEEecc
Confidence 67799999998 4543 4455544444677774 4444556666666655421 23444444
Q ss_pred cccc--ccCCCCceeEEEec
Q 027913 184 VGEA--IPVSDASVDAVVGT 201 (217)
Q Consensus 184 d~~~--l~~~~~sfD~V~~~ 201 (217)
.+.. +.---..+|+|+..
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEc
Confidence 3321 11001358999864
No 437
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=58.48 E-value=15 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.069 Sum_probs=29.8
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHH
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYA 164 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a 164 (217)
+-+||-=|||.|+++..++ ..|..+-|-+.|--|+-..
T Consensus 151 ki~iLvPGaGlGRLa~dla-~~G~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLA-CLGFKCQGNEFSYFMLICS 188 (369)
T ss_pred CceEEecCCCchhHHHHHH-HhcccccccHHHHHHHHHH
Confidence 5689999999999999998 4556666778887776443
No 438
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=57.83 E-value=42 Score=30.46 Aligned_cols=79 Identities=9% Similarity=0.044 Sum_probs=48.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHc-----CC-CCCCeEEEeccccccc-C--CC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAA-----GL-PLTNFKFLQAVGEAIP-V--SD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~-~~~~v~~~~~d~~~l~-~--~~ 192 (217)
.+++||=.|+. |.++..+++ ..|.+|++++.+.+.++...+.+.+. +. ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 56677777664 545544443 45788999999887765554433221 10 0135789999997643 1 11
Q ss_pred CceeEEEecccc
Q 027913 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~V~~~~~l 204 (217)
+..|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 458998877543
No 439
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=57.73 E-value=38 Score=30.80 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=41.8
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 204 (217)
+..+|| +.||+|.-+..++ ....++.+++.|+ +++..+.|+.+.+-....+|+|++..-+
T Consensus 505 k~mKIL-vaCGsGiGTStmv----------------a~kIkk~Lke~GI---~veV~~~~Vsev~s~~~~aDIIVtt~~L 564 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMM----------------KMKIKKYLDKRGI---PIIMDSCAVNDYKGKLETIDIIVCSKHL 564 (602)
T ss_pred cccEEE-EECCCCchHHHHH----------------HHHHHHHHHHcCC---CeEEEEechHhCcccCCCCCEEEEcccc
Confidence 445666 7788885444433 3566777788887 3678888888887555678999987543
No 440
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=57.69 E-value=49 Score=25.97 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|-.|++.| +...+++ ..|.+|++++.++. +...+.....+ .++.++..|+.+.. +.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG---RKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 5788998887766 3333332 56778988887643 23333333333 46788888886642 11
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+++.+....
T Consensus 81 ~g~iD~lv~~ag~~ 94 (251)
T PRK12481 81 MGHIDILINNAGII 94 (251)
T ss_pred cCCCCEEEECCCcC
Confidence 14689998876553
No 441
>PLN02780 ketoreductase/ oxidoreductase
Probab=57.59 E-value=44 Score=27.65 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=39.8
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE 186 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~ 186 (217)
.++.+|=.|++.|- ++..++ ..|.+|+.++.+++.++...+.+....-. .++..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La-~~G~~Vil~~R~~~~l~~~~~~l~~~~~~-~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLA-RKGLNLVLVARNPDKLKDVSDSIQSKYSK-TQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHHHHHHHHCCC-cEEEEEEEECC
Confidence 46788888876662 344444 45778999999999887776666543211 25666777765
No 442
>PRK06198 short chain dehydrogenase; Provisional
Probab=57.55 E-value=55 Score=25.61 Aligned_cols=76 Identities=21% Similarity=0.138 Sum_probs=46.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCe-EEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQ-VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----- 190 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----- 190 (217)
.++++|=.|++.| ....+++ ..+.+ |++++.+++.++.....+...+ .++.++..|+.+.. +
T Consensus 5 ~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG---AKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678888886544 4444332 44666 9999988776655444443333 46777888886532 0
Q ss_pred CCCceeEEEecccc
Q 027913 191 SDASVDAVVGTLVL 204 (217)
Q Consensus 191 ~~~sfD~V~~~~~l 204 (217)
.-+.+|.|+.+...
T Consensus 81 ~~g~id~li~~ag~ 94 (260)
T PRK06198 81 AFGRLDALVNAAGL 94 (260)
T ss_pred HhCCCCEEEECCCc
Confidence 01358888877654
No 443
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.32 E-value=22 Score=30.40 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=52.3
Q ss_pred CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~ 189 (217)
.++..|+|+.|..|.-+..++. ..-.++.+.|.+..-.+..++.+...|. ..++...+|+...+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~--~~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV--SIVESVEGDFLNTA 277 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC--CccccccccccCCC
Confidence 4789999999999987766664 3345799999999999999999988887 46777788887753
No 444
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=57.25 E-value=1e+02 Score=24.82 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC-CCCCeEEEeccccc-c-------cCCCCcee
Q 027913 126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEA-I-------PVSDASVD 196 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~v~~~~~d~~~-l-------~~~~~sfD 196 (217)
...|+.+|||--.-...+....+..++=+|..+ +++.-++.+.+.+. ...+.+++..|+.. + .+..+.--
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 457999999988776666423345666666643 45555555655432 23678899999862 1 12233455
Q ss_pred EEEecccccccCCh
Q 027913 197 AVVGTLVLCSVKDV 210 (217)
Q Consensus 197 ~V~~~~~l~~~~d~ 210 (217)
++++-.++.+++..
T Consensus 161 l~i~EGvl~YL~~~ 174 (260)
T TIGR00027 161 AWLWEGLLMYLTEE 174 (260)
T ss_pred eeeecchhhcCCHH
Confidence 78888899888753
No 445
>PLN02240 UDP-glucose 4-epimerase
Probab=57.21 E-value=42 Score=27.77 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCH----HHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCC
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR----KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSD 192 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~----~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~ 192 (217)
.+++||=.| |+|.+...+++ ..+.+|+++|... .............+ .+++++.+|+.+.. +..
T Consensus 4 ~~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 4 MGRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLG---DNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccC---ccceEEecCcCCHHHHHHHHHh
Confidence 456788776 55655555443 3467899998532 22222221111111 36788889887643 223
Q ss_pred CceeEEEecccc
Q 027913 193 ASVDAVVGTLVL 204 (217)
Q Consensus 193 ~sfD~V~~~~~l 204 (217)
..+|.|+.....
T Consensus 80 ~~~d~vih~a~~ 91 (352)
T PLN02240 80 TRFDAVIHFAGL 91 (352)
T ss_pred CCCCEEEEcccc
Confidence 357888876543
No 446
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=57.05 E-value=48 Score=27.61 Aligned_cols=79 Identities=20% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHH----HHHHHHHHHHcCCCCCCeEEEeccccccc-CC--CCc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKM----EKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DAS 194 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~--~~s 194 (217)
+.++||=.| |+|..+..+++ ..+.+|+++|..... +...........+ .++.++.+|+.+.. +. -..
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQW--SRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccC--CceEEEEccCCCHHHHHHHhhC
Confidence 567877766 55655555443 446789999975432 1111111111111 36889999997642 10 124
Q ss_pred eeEEEecccccc
Q 027913 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~V~~~~~l~~ 206 (217)
+|+|+-.....+
T Consensus 91 ~d~ViHlAa~~~ 102 (348)
T PRK15181 91 VDYVLHQAALGS 102 (348)
T ss_pred CCEEEECccccC
Confidence 898887766543
No 447
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=57.04 E-value=32 Score=28.83 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=48.3
Q ss_pred EEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-------CCCCceeEEEe
Q 027913 129 VLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSDASVDAVVG 200 (217)
Q Consensus 129 vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-------~~~~sfD~V~~ 200 (217)
-+|||.|.--.--.+- ...++...++|+...-+..|+.+..+.++. ..+.++.....+.- .++..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecchhhcchhhhccCccceeeEEec
Confidence 4677776653222221 245678999999999999999999888875 55666555332211 22345888887
Q ss_pred cccc
Q 027913 201 TLVL 204 (217)
Q Consensus 201 ~~~l 204 (217)
+--|
T Consensus 185 NPPF 188 (419)
T KOG2912|consen 185 NPPF 188 (419)
T ss_pred CCch
Confidence 6533
No 448
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=57.00 E-value=39 Score=23.86 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=40.7
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~ 187 (217)
...-|+=+||..|. .....|-......++.+++.+.+.|+++.++.+......+
T Consensus 52 GADGV~V~gC~~g~---------Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~ 105 (124)
T PF02662_consen 52 GADGVLVAGCHPGD---------CHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPE 105 (124)
T ss_pred CCCEEEEeCCCCCC---------CCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCccc
Confidence 34568889999885 2334566677888999999999999987888887665433
No 449
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=56.95 E-value=26 Score=29.79 Aligned_cols=76 Identities=25% Similarity=0.152 Sum_probs=42.5
Q ss_pred CCCeEEEECCc-CCcc-hHhhhhCCCCeEEEecCC-------------------HHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPN-------------------RKMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD~s-------------------~~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
...+||=+||| .|.. +..|+...-.+++.+|.. ..-.+.+.+++.+.... -++.....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD-VQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC-CEEEEEec
Confidence 67789999998 4543 455554444589999887 34456666666554321 23333333
Q ss_pred ccccccCC--CCceeEEEec
Q 027913 184 VGEAIPVS--DASVDAVVGT 201 (217)
Q Consensus 184 d~~~l~~~--~~sfD~V~~~ 201 (217)
.+...... -..+|+|+..
T Consensus 213 ~~~~~~~~~~~~~~D~Vv~~ 232 (376)
T PRK08762 213 RVTSDNVEALLQDVDVVVDG 232 (376)
T ss_pred cCChHHHHHHHhCCCEEEEC
Confidence 22211000 1358998854
No 450
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.81 E-value=19 Score=29.63 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 166 (217)
++.+||-.|+|. |..+..+++..+. .+++++.+++..+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 678888888775 5666677777777 79999999988876554
No 451
>PRK08177 short chain dehydrogenase; Provisional
Probab=56.55 E-value=33 Score=26.31 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=39.6
Q ss_pred CeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCCce
Q 027913 127 KKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDASV 195 (217)
Q Consensus 127 ~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~sf 195 (217)
+++|=.|+..|. ++..++ ..+.+|++++.+++-.+..++. .++.+...|+.+.. +..+.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLL-ERGWQVTATVRGPQQDTALQAL--------PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHH-hCCCEEEEEeCCCcchHHHHhc--------cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 356666654331 234444 4567899999887654433221 24567777775531 223468
Q ss_pred eEEEecccc
Q 027913 196 DAVVGTLVL 204 (217)
Q Consensus 196 D~V~~~~~l 204 (217)
|+|+.+...
T Consensus 73 d~vi~~ag~ 81 (225)
T PRK08177 73 DLLFVNAGI 81 (225)
T ss_pred CEEEEcCcc
Confidence 998876543
No 452
>PRK06197 short chain dehydrogenase; Provisional
Probab=56.54 E-value=70 Score=25.93 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=49.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------C--C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V--S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~--~ 191 (217)
.+++||=.|+.. .++..+++ ..+.++++++.+++..+.+.+.+...... .++.++..|+.+.. + .
T Consensus 15 ~~k~vlItGas~-gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANT-GLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPG-ADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CceEEEECCCCCHHHHHHHHHHHHhh
Confidence 567888777644 34444443 45678999998887766655554432111 46788899987642 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+.+|+|+.+..+.
T Consensus 93 ~~~iD~li~nAg~~ 106 (306)
T PRK06197 93 YPRIDLLINNAGVM 106 (306)
T ss_pred CCCCCEEEECCccc
Confidence 14689999877653
No 453
>PRK07060 short chain dehydrogenase; Provisional
Probab=56.37 E-value=50 Score=25.48 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=43.5
Q ss_pred CCCeEEEECCcCC--cchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-CCcee
Q 027913 125 KAKKVLEIGIGTG--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-DASVD 196 (217)
Q Consensus 125 ~~~~vLDiGcG~G--~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-~~sfD 196 (217)
.++++|=.|++.| ..+.......+.+|++++.+++.++...+.. .+.++..|+.+.. +. .+.+|
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~--------~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET--------GCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------CCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 5678887776533 3322222245778999999887554433221 2356777775532 11 24689
Q ss_pred EEEecccccc
Q 027913 197 AVVGTLVLCS 206 (217)
Q Consensus 197 ~V~~~~~l~~ 206 (217)
+|+.+.....
T Consensus 80 ~vi~~ag~~~ 89 (245)
T PRK07060 80 GLVNCAGIAS 89 (245)
T ss_pred EEEECCCCCC
Confidence 9998776543
No 454
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.25 E-value=46 Score=25.74 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCeEEEECCcCC--c-chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTG--P-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
+++++|=+|++.| . ++..++ ..+.+|++++-++..++.....+.. + .++.++.+|+.+.. + .
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEAAERVAAEILA-G---GRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhc-C---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567887876544 2 233333 4577899999998776665555433 2 36788888886542 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 79 ~~~~d~vi~~ag~ 91 (251)
T PRK07231 79 FGSVDILVNNAGT 91 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1358999887654
No 455
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.05 E-value=88 Score=25.07 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCCeEEEECCcC-CcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~ 190 (217)
.++.+|=.|++. +.+...+++ ..|.+|+.++.++...+..++...+.+ .. .++..|+.+.. -
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~---~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG---SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC---Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 467888889852 233433332 457789988888643333333333333 23 46777876542 1
Q ss_pred CCCceeEEEeccccc
Q 027913 191 SDASVDAVVGTLVLC 205 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~ 205 (217)
.-+.+|+++.+..+.
T Consensus 80 ~~g~iDilVnnAG~~ 94 (274)
T PRK08415 80 DLGKIDFIVHSVAFA 94 (274)
T ss_pred HcCCCCEEEECCccC
Confidence 125789999887653
No 456
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.96 E-value=56 Score=28.33 Aligned_cols=72 Identities=24% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCeEEEECCcCCcc--hHhhhhCCCCeEEEecCCH-HHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913 125 KAKKVLEIGIGTGPN--LKYYAADTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT 201 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~--~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~ 201 (217)
.+++|+=+|+|.... +..++ ..|.+|+++|.+. +.++...+.+...+ +.++..|..+.. .+.+|+|+.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~--~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLK-KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPEEF--LEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcchhH--hhcCCEEEEC
Confidence 467888898876322 22222 6678999999985 33333333333333 456666654421 2468988876
Q ss_pred ccc
Q 027913 202 LVL 204 (217)
Q Consensus 202 ~~l 204 (217)
-..
T Consensus 76 ~g~ 78 (450)
T PRK14106 76 PGV 78 (450)
T ss_pred CCC
Confidence 654
No 457
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=55.78 E-value=40 Score=28.22 Aligned_cols=79 Identities=19% Similarity=0.046 Sum_probs=46.2
Q ss_pred CCeEEEECCcCCcch----HhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCcee
Q 027913 126 AKKVLEIGIGTGPNL----KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD 196 (217)
Q Consensus 126 ~~~vLDiGcG~G~~~----~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD 196 (217)
+.+||=.| |.|+.. ..|. ..+..|+++|-=......+-++.++.-.....+.|..+|+.+.+ |....||
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~-~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALL-KRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHH-hCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 34666665 444432 3333 56778999986443333333333322221268999999998865 5667788
Q ss_pred EEEecccccc
Q 027913 197 AVVGTLVLCS 206 (217)
Q Consensus 197 ~V~~~~~l~~ 206 (217)
.|+-...+-.
T Consensus 80 ~V~Hfa~~~~ 89 (343)
T KOG1371|consen 80 AVMHFAALAA 89 (343)
T ss_pred eEEeehhhhc
Confidence 8876555443
No 458
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=55.39 E-value=24 Score=30.21 Aligned_cols=74 Identities=19% Similarity=0.144 Sum_probs=44.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHH--HHHHHHHcCCCCCCeEEEeccccccc-----CCCC-
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKY--AQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDA- 193 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~--a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~- 193 (217)
.+++||=+| |+|..+..+++ ..+.+|++++-++..+.. ......... .+++++.+|+.+.. +...
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~---~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKEL---PGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhc---CCceEEEeeCCCHHHHHHHHHHhC
Confidence 567888887 57776665554 457789999887653321 011111111 36789999987642 2211
Q ss_pred -ceeEEEecc
Q 027913 194 -SVDAVVGTL 202 (217)
Q Consensus 194 -sfD~V~~~~ 202 (217)
.+|+|+.+.
T Consensus 135 ~~~D~Vi~~a 144 (390)
T PLN02657 135 DPVDVVVSCL 144 (390)
T ss_pred CCCcEEEECC
Confidence 589998654
No 459
>PRK07775 short chain dehydrogenase; Provisional
Probab=54.92 E-value=72 Score=25.40 Aligned_cols=76 Identities=11% Similarity=-0.104 Sum_probs=46.6
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
..+.+|=.|++ |.+...+++ ..|.+|++++.+++..+.........+ .++.++..|+.+.. +.
T Consensus 9 ~~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 9 DRRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADG---GEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 44578877764 444444443 456788888888776655554444433 36778888887532 10
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|.|+.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (274)
T PRK07775 85 LGEIEVLVSGAGD 97 (274)
T ss_pred cCCCCEEEECCCc
Confidence 1357888876644
No 460
>PRK08303 short chain dehydrogenase; Provisional
Probab=54.90 E-value=51 Score=27.01 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=45.7
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCH----------HHHHHHHHHHHHcCCCCCCeEEEeccccccc--
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNR----------KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-- 189 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~----------~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-- 189 (217)
.++++|-.|++.|. .+..++ ..|.+|+.++.+. +.++...+.+...+ .++.++..|+.+..
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELG-AAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG---GRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEecccccccccccccchHHHHHHHHHhcC---CceEEEEcCCCCHHHH
Confidence 56789999987762 233343 4567888888763 33444444444444 35677888886532
Q ss_pred ------C--CCCceeEEEecc
Q 027913 190 ------V--SDASVDAVVGTL 202 (217)
Q Consensus 190 ------~--~~~sfD~V~~~~ 202 (217)
. .-+..|+++.+.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 0 114689988775
No 461
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=54.67 E-value=32 Score=27.98 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=42.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CC--CCceeEE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDAV 198 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~--~~sfD~V 198 (217)
.+++||=.|+ +|..+..+++ ..+.+|++++.++.............+.. .+++++.+|+.+.. +. -..+|.|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAK-ERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCC-CceEEEeccccCcchHHHHHcCCCEE
Confidence 4567777664 5655555443 45778888876654322222211111211 47889999987642 10 1247888
Q ss_pred Eeccc
Q 027913 199 VGTLV 203 (217)
Q Consensus 199 ~~~~~ 203 (217)
+....
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 76554
No 462
>PRK07831 short chain dehydrogenase; Provisional
Probab=54.65 E-value=83 Score=24.68 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=49.8
Q ss_pred CCCeEEEECCc-CC--cc-hHhhhhCCCCeEEEecCCHHHHHHHHHHHHH-cCCCCCCeEEEeccccccc-----C----
Q 027913 125 KAKKVLEIGIG-TG--PN-LKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIP-----V---- 190 (217)
Q Consensus 125 ~~~~vLDiGcG-~G--~~-~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~l~-----~---- 190 (217)
.++++|=.|++ .| .. ...++ ..+.+|+.+|.+++.++...+.+.+ .+. .++.++..|+.+.. +
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRAL-EEGARVVISDIHERRLGETADELAAELGL--GRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHHhcCC--ceEEEEEccCCCHHHHHHHHHHHH
Confidence 46788888863 33 32 23333 4567899999998877777666544 221 36788888886531 1
Q ss_pred -CCCceeEEEeccccc
Q 027913 191 -SDASVDAVVGTLVLC 205 (217)
Q Consensus 191 -~~~sfD~V~~~~~l~ 205 (217)
.-+..|+++.+..+.
T Consensus 93 ~~~g~id~li~~ag~~ 108 (262)
T PRK07831 93 ERLGRLDVLVNNAGLG 108 (262)
T ss_pred HHcCCCCEEEECCCCC
Confidence 114689998877653
No 463
>PRK07791 short chain dehydrogenase; Provisional
Probab=54.34 E-value=56 Score=26.32 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=48.1
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCH---------HHHHHHHHHHHHcCCCCCCeEEEeccccccc---
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNR---------KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--- 189 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~---------~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--- 189 (217)
.++++|=.|++.|. ++..++ ..+.+++.++.+. +.++...+.+...+ .++.++..|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la-~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~~~~~v~ 80 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFA-AEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG---GEAVANGDDIADWDGAA 80 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC---CceEEEeCCCCCHHHHH
Confidence 57789999988773 233343 4567888888764 44555444444444 35677888886531
Q ss_pred -------CCCCceeEEEeccccc
Q 027913 190 -------VSDASVDAVVGTLVLC 205 (217)
Q Consensus 190 -------~~~~sfD~V~~~~~l~ 205 (217)
-.-+..|+++.+..+.
T Consensus 81 ~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 81 NLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHhcCCCCEEEECCCCC
Confidence 0125789999877653
No 464
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=54.33 E-value=11 Score=29.68 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-------cCCCCce
Q 027913 124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-------PVSDASV 195 (217)
Q Consensus 124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-------~~~~~sf 195 (217)
.++...+|.--|.|.++..+.+ ....+++++|..|-+.+.|+....+.-- +.+..+.+.+..+ .+.+.+|
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~--~~l~a~Lg~Fs~~~~l~~~~gl~~~~v 119 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMH--PTLKAVLGNFSYIKSLIADTGLLDVGV 119 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcc--hhHHHHHhhhHHHHHHHHHhCCCcCCc
Confidence 3888999999999999999885 5566888899999887777765532211 2222233333222 2556788
Q ss_pred eEEEeccccc
Q 027913 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~V~~~~~l~ 205 (217)
|-|++-+...
T Consensus 120 DGiLmDlGcS 129 (303)
T KOG2782|consen 120 DGILMDLGCS 129 (303)
T ss_pred ceEEeecCcc
Confidence 8888755443
No 465
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=54.28 E-value=72 Score=25.03 Aligned_cols=60 Identities=12% Similarity=-0.087 Sum_probs=38.2
Q ss_pred eEEEECCcCCc---chHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913 128 KVLEIGIGTGP---NLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188 (217)
Q Consensus 128 ~vLDiGcG~G~---~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l 188 (217)
.+|-.|++.|. +++.+++ ..+.+|+.++.+++.++...+.+...... .++.++..|+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSG-LRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCC-ceEEEEEeccCCH
Confidence 46667776552 2233443 25778999999988877776666542111 3678888888653
No 466
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=54.03 E-value=9.7 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=26.4
Q ss_pred cCCcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 135 G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 167 (217)
|.|..+..+++..|.+++++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 346677778877779999999999988887753
No 467
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=53.80 E-value=85 Score=25.16 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHH---HHcCCCCCCeEEEeccc
Q 027913 111 VAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA---VAAGLPLTNFKFLQAVG 185 (217)
Q Consensus 111 ~~~~~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~---~~~~~~~~~v~~~~~d~ 185 (217)
...+.+++++.+. ...-.|+|--+|-=.+++...+.-..-++.+|+|...+..|++.. .+.++ +++.++.--+
T Consensus 118 ~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~--k~i~~V~NKv 195 (255)
T COG3640 118 MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGI--KRIFVVLNKV 195 (255)
T ss_pred HHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCC--ceEEEEEeec
Confidence 5567777777775 255679999999888888887666778999999999887777543 45564 4666654433
No 468
>PLN02253 xanthoxin dehydrogenase
Probab=53.37 E-value=54 Score=26.09 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=47.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|++.| ++..+++ ..|.+|+++|.++...+...+.+.. + .++.++..|+.+.. +.
T Consensus 17 ~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-E---PNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C---CceEEEEeecCCHHHHHHHHHHHHHH
Confidence 5677888876544 4444443 4578899999887766554443311 1 36788888886642 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 92 ~g~id~li~~Ag~ 104 (280)
T PLN02253 92 FGTLDIMVNNAGL 104 (280)
T ss_pred hCCCCEEEECCCc
Confidence 1468999877654
No 469
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=53.04 E-value=79 Score=25.81 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=39.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCC-eEEEecCCHHHHHHHHH---HHHHcCCCCCCeEEEecccccc---cCCCCc
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDV-QVLGVDPNRKMEKYAQT---AAVAAGLPLTNFKFLQAVGEAI---PVSDAS 194 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~-~v~gvD~s~~~l~~a~~---~~~~~~~~~~~v~~~~~d~~~l---~~~~~s 194 (217)
.++++|=+|+| |. ++.++. ..+. +++.++.+++..+.+++ .+...+ ..+.+...|+.+. .-.-..
T Consensus 125 ~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~---~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV---PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC---CCceeEEechhhhhHHHhhhcc
Confidence 56789999997 52 223221 3344 59999988633333333 232222 1233444444322 111134
Q ss_pred eeEEEecccccc
Q 027913 195 VDAVVGTLVLCS 206 (217)
Q Consensus 195 fD~V~~~~~l~~ 206 (217)
+|+|+.+-.+..
T Consensus 200 ~DilINaTp~Gm 211 (289)
T PRK12548 200 SDILVNATLVGM 211 (289)
T ss_pred CCEEEEeCCCCC
Confidence 688887665544
No 470
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=52.91 E-value=63 Score=25.28 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.| +...+++ ..+.+|+.+|.+.+.++...+.. + .++.++..|+.+.. + .
T Consensus 5 ~~~~vlItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 5 QGKVALLTGAASG-IGEAVAERYLAEGARVVIADIKPARARLAALEI---G---PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567887775444 4444443 45788999999988766554432 2 35778888876531 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+++.+...
T Consensus 78 ~~~id~li~~ag~ 90 (257)
T PRK07067 78 FGGIDILFNNAAL 90 (257)
T ss_pred cCCCCEEEECCCc
Confidence 1468888876554
No 471
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=52.90 E-value=41 Score=25.20 Aligned_cols=31 Identities=29% Similarity=0.144 Sum_probs=18.9
Q ss_pred eEEEECCc-CCcc-hHhhhhCCCCeEEEecCCH
Q 027913 128 KVLEIGIG-TGPN-LKYYAADTDVQVLGVDPNR 158 (217)
Q Consensus 128 ~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD~s~ 158 (217)
+|+=|||| .|.. +..+++..-.+++.+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47778888 3543 4445543334688887764
No 472
>PRK09186 flagellin modification protein A; Provisional
Probab=52.80 E-value=64 Score=25.10 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=46.5
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.+++||=.|++.| .+..+++ ..+.++++++.+++.++...+.+...... ..+.++.+|+.+.. +.
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKS-KKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCC-CceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4677888887544 3333332 45778999999888776666555332111 34667788886531 11
Q ss_pred CCceeEEEecc
Q 027913 192 DASVDAVVGTL 202 (217)
Q Consensus 192 ~~sfD~V~~~~ 202 (217)
-+..|+|+.+.
T Consensus 81 ~~~id~vi~~A 91 (256)
T PRK09186 81 YGKIDGAVNCA 91 (256)
T ss_pred cCCccEEEECC
Confidence 13479998765
No 473
>PRK09135 pteridine reductase; Provisional
Probab=52.72 E-value=90 Score=24.01 Aligned_cols=77 Identities=18% Similarity=-0.084 Sum_probs=45.7
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCC-HHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN-RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~---- 191 (217)
.+++||=.|++ |.++..+++ ..+.+|++++.+ +...+...+.+..... .++.++..|+.+.. +.
T Consensus 5 ~~~~vlItGa~-g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (249)
T PRK09135 5 SAKVALITGGA-RRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRP--GSAAALQADLLDPDALPELVAACVA 81 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45678989965 444444443 457899999975 3334444333332221 35788889987643 11
Q ss_pred -CCceeEEEecccc
Q 027913 192 -DASVDAVVGTLVL 204 (217)
Q Consensus 192 -~~sfD~V~~~~~l 204 (217)
-+..|.|+.....
T Consensus 82 ~~~~~d~vi~~ag~ 95 (249)
T PRK09135 82 AFGRLDALVNNASS 95 (249)
T ss_pred HcCCCCEEEECCCC
Confidence 1357888877654
No 474
>PRK05875 short chain dehydrogenase; Provisional
Probab=52.71 E-value=64 Score=25.54 Aligned_cols=77 Identities=21% Similarity=0.076 Sum_probs=47.2
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++.| ....+++ ..+.+|++++.+++..+...+.+...+.. .++.++..|+.+.. +.
T Consensus 6 ~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGA-GAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678898886533 3333332 45778999999887665555444332211 36788888886532 11
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+..|+|+.+..
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 136799887664
No 475
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=52.64 E-value=83 Score=26.22 Aligned_cols=79 Identities=24% Similarity=0.189 Sum_probs=48.3
Q ss_pred CeEEEECCcCCcchHhhhhCC---------------------CCeEEEecCCH--HHHHHHHHHHHHc------------
Q 027913 127 KKVLEIGIGTGPNLKYYAADT---------------------DVQVLGVDPNR--KMEKYAQTAAVAA------------ 171 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~~~---------------------~~~v~gvD~s~--~~l~~a~~~~~~~------------ 171 (217)
.+||=||.|.|.-+..++... ...++.||+.+ ..++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999986554443211 13799999976 5666666555433
Q ss_pred -CCC--CCCeEEEecccccccCCC-------CceeEEEeccccc
Q 027913 172 -GLP--LTNFKFLQAVGEAIPVSD-------ASVDAVVGTLVLC 205 (217)
Q Consensus 172 -~~~--~~~v~~~~~d~~~l~~~~-------~sfD~V~~~~~l~ 205 (217)
... .-++.|.+.|+..+..++ ...|+|+..|++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlN 211 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLN 211 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHH
Confidence 001 125788888887764221 2456666655543
No 476
>PRK06940 short chain dehydrogenase; Provisional
Probab=52.63 E-value=78 Score=25.29 Aligned_cols=74 Identities=20% Similarity=0.095 Sum_probs=46.3
Q ss_pred CeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CCCce
Q 027913 127 KKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SDASV 195 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~~sf 195 (217)
+.+|=-|+ |.+...+++ ..+.+|+++|.+++.++...+.+...+ .++.++..|+.+.. + ..+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 34555554 335544443 246789999999877766665554444 36778888886532 1 12468
Q ss_pred eEEEeccccc
Q 027913 196 DAVVGTLVLC 205 (217)
Q Consensus 196 D~V~~~~~l~ 205 (217)
|+++.+..+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9998877653
No 477
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.62 E-value=52 Score=28.12 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=49.9
Q ss_pred CCcCCcchHhhhh----CCCCeEEEe---cCCHHHHHHHHHHHHHcC----CCCCCeEEEeccccccc--CC-------C
Q 027913 133 GIGTGPNLKYYAA----DTDVQVLGV---DPNRKMEKYAQTAAVAAG----LPLTNFKFLQAVGEAIP--VS-------D 192 (217)
Q Consensus 133 GcG~G~~~~~l~~----~~~~~v~gv---D~s~~~l~~a~~~~~~~~----~~~~~v~~~~~d~~~l~--~~-------~ 192 (217)
-.+||.++.++.. ....+|++. +-.+....+.++.+.... ...++++.+.+|..+.. ++ .
T Consensus 6 TGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La 85 (382)
T COG3320 6 TGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELA 85 (382)
T ss_pred ecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHh
Confidence 4578888766554 334556554 333345555555554111 11279999999998543 22 2
Q ss_pred CceeEEEecccccccCChhhhhc
Q 027913 193 ASVDAVVGTLVLCSVKDVDMTLQ 215 (217)
Q Consensus 193 ~sfD~V~~~~~l~~~~d~~~~L~ 215 (217)
+..|.|+-+.++.|.-.|-..|+
T Consensus 86 ~~vD~I~H~gA~Vn~v~pYs~L~ 108 (382)
T COG3320 86 ENVDLIIHNAALVNHVFPYSELR 108 (382)
T ss_pred hhcceEEecchhhcccCcHHHhc
Confidence 57999999887776544444444
No 478
>PRK07024 short chain dehydrogenase; Provisional
Probab=52.55 E-value=48 Score=26.03 Aligned_cols=74 Identities=14% Similarity=0.021 Sum_probs=46.2
Q ss_pred CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----CCC
Q 027913 127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----SDA 193 (217)
Q Consensus 127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~~~ 193 (217)
++||=.|++.| ++..+++ ..+.+++.++.+++.++...+.+... .++.++..|+.+.. + .-+
T Consensus 3 ~~vlItGas~g-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSG-IGQALAREYARQGATLGLVARRTDALQAFAARLPKA----ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC----CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56777776544 4333332 45778999999988766555443211 26788889887632 0 124
Q ss_pred ceeEEEeccccc
Q 027913 194 SVDAVVGTLVLC 205 (217)
Q Consensus 194 sfD~V~~~~~l~ 205 (217)
..|+|+.+....
T Consensus 78 ~id~lv~~ag~~ 89 (257)
T PRK07024 78 LPDVVIANAGIS 89 (257)
T ss_pred CCCEEEECCCcC
Confidence 579999876553
No 479
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.47 E-value=72 Score=25.16 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=45.7
Q ss_pred CCCeEEEECCcCC-cchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C
Q 027913 125 KAKKVLEIGIGTG-PNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V 190 (217)
Q Consensus 125 ~~~~vLDiGcG~G-~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~ 190 (217)
.++.+|=.|++.| .....+++ ..+.+|+.++.++...+..++...+.+ .+.++..|+.+.. -
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD----APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc----cceEEecCcCCHHHHHHHHHHHHH
Confidence 5788999998752 44444443 456788888888654333333322222 3356777775531 0
Q ss_pred CCCceeEEEeccccc
Q 027913 191 SDASVDAVVGTLVLC 205 (217)
Q Consensus 191 ~~~sfD~V~~~~~l~ 205 (217)
.-+..|+++.+..+.
T Consensus 85 ~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 85 EWGRLDFLLHSIAFA 99 (258)
T ss_pred HcCCCCEEEEcCccC
Confidence 115789999877653
No 480
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.35 E-value=73 Score=26.00 Aligned_cols=76 Identities=17% Similarity=0.041 Sum_probs=47.6
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCH-HHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~ 191 (217)
.++++|=.|++.|. ++..|+ ..|.+|+.+|.+. ..++...+.+...+ .++.++..|+.+.. + .
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~-~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLA-RLGATVVVNDVASALDASDVLDEIRAAG---AKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEecCCchhHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67789988887663 233444 4577899988753 34444444444444 46788888886531 1 1
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+++.+..+
T Consensus 87 ~g~iD~li~nAG~ 99 (306)
T PRK07792 87 LGGLDIVVNNAGI 99 (306)
T ss_pred hCCCCEEEECCCC
Confidence 2568999887654
No 481
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.83 E-value=60 Score=25.14 Aligned_cols=76 Identities=17% Similarity=0.007 Sum_probs=44.1
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCH-HHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~---- 191 (217)
.++++|-.|++.| ++..+++ ..+.+|++++.+. ...+...+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG---GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678888886443 3333332 4577888887654 33444444443333 36778888886642 11
Q ss_pred -CCceeEEEecccc
Q 027913 192 -DASVDAVVGTLVL 204 (217)
Q Consensus 192 -~~sfD~V~~~~~l 204 (217)
-+..|+|+.+...
T Consensus 81 ~~~~~d~vi~~ag~ 94 (248)
T PRK07806 81 EFGGLDALVLNASG 94 (248)
T ss_pred hCCCCcEEEECCCC
Confidence 1358888766543
No 482
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.81 E-value=31 Score=28.86 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCCeEEEECCcCCcchHh-hhh-CCCCeEEEecCCHHHHHHHHHH
Q 027913 125 KAKKVLEIGIGTGPNLKY-YAA-DTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~-l~~-~~~~~v~gvD~s~~~l~~a~~~ 167 (217)
++.++.=+|+|.=.++-. -++ ....+++|||++++-.+.|++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 677777777775443322 222 3456899999999999999875
No 483
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.76 E-value=41 Score=29.73 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913 125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV 203 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 203 (217)
++++|+=+|.| +|..+..++...|..|++.|..+..++. +.+.|+ .++.++.....+ ..+|+|+.+-.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~----l~~~g~-----~~~~~~~~~~~l--~~~D~VV~SpG 79 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP----HAERGV-----ATVSTSDAVQQI--ADYALVVTSPG 79 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH----HHhCCC-----EEEcCcchHhHh--hcCCEEEECCC
Confidence 67789999988 4444444555778899999987765433 222342 343332111112 24788887776
Q ss_pred ccc
Q 027913 204 LCS 206 (217)
Q Consensus 204 l~~ 206 (217)
+..
T Consensus 80 i~~ 82 (488)
T PRK03369 80 FRP 82 (488)
T ss_pred CCC
Confidence 553
No 484
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=51.74 E-value=26 Score=27.79 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=32.5
Q ss_pred CCCCeEEEECCcC-CcchHhhhhCCCCe-EEEecCCHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~ 167 (217)
.++.+||=.|+|. |..+..+++..+.. +++++.+++..+.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 4778888888764 55566666666777 99999999987766653
No 485
>PRK08265 short chain dehydrogenase; Provisional
Probab=51.09 E-value=74 Score=25.08 Aligned_cols=73 Identities=18% Similarity=0.054 Sum_probs=45.7
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
.++++|=.|++.| +...+++ ..|.+|+.+|.+++.++...+.. + .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL---G---ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C---CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 5678888886554 3333332 45779999999887554443332 2 36788888886542 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|+++.+...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1468988876653
No 486
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=50.94 E-value=28 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=33.7
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||-+|+| .|..+..+++..+.++++++.+++..+.+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467788889886 6666667777778899999999988777743
No 487
>PLN02740 Alcohol dehydrogenase-like
Probab=50.93 E-value=26 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.9
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDV-QVLGVDPNRKMEKYAQT 166 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 166 (217)
.++.+||=+|+| -|..+..+++..+. .|+++|.+++.++.+++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 478899999875 23445556666676 69999999988887764
No 488
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.89 E-value=85 Score=24.83 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=22.8
Q ss_pred CCCeEEEECCc-CCcc-hHhhhhCCCCeEEEecCC
Q 027913 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD~s 157 (217)
...+||=+||| .|.. +..|++..-.+++.+|..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 67799999998 5554 445554444578888854
No 489
>PRK06701 short chain dehydrogenase; Provisional
Probab=50.81 E-value=71 Score=25.83 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCH-HHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC----
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNR-KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS---- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~---- 191 (217)
+++++|=.|++.|. ++..++ ..+.+|+.++.++ ..++.....+...+ .++.++..|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEHEDANETKQRVEKEG---VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcchHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789988876552 233343 4577888888774 33444444444334 46788888886532 11
Q ss_pred -CCceeEEEecccc
Q 027913 192 -DASVDAVVGTLVL 204 (217)
Q Consensus 192 -~~sfD~V~~~~~l 204 (217)
-+.+|+|+.+...
T Consensus 121 ~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 121 ELGRLDILVNNAAF 134 (290)
T ss_pred HcCCCCEEEECCcc
Confidence 1368988876554
No 490
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=50.72 E-value=27 Score=28.88 Aligned_cols=44 Identities=11% Similarity=0.028 Sum_probs=32.5
Q ss_pred CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913 124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167 (217)
Q Consensus 124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~ 167 (217)
.++.+||=.|+| .|..+..+++..+..+++++.+++-++.+++.
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 478899999875 34445566667777899999999877776653
No 491
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.56 E-value=67 Score=24.87 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|+..| ....+++ ..+.++++++-+.+.++...+... .+ .++.++.+|+.+.. +.
T Consensus 4 ~~k~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~---~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG---GRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC---CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678888888544 3333332 457789999988876665554443 22 46788888886532 10
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+.+|+|+.....
T Consensus 79 ~~~id~vi~~ag~ 91 (252)
T PRK06138 79 WGRLDVLVNNAGF 91 (252)
T ss_pred cCCCCEEEECCCC
Confidence 1468988876654
No 492
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.37 E-value=58 Score=26.62 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG 200 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~ 200 (217)
+++...|+|+-.|.++-.+. ..+-.|++||--+- .+ .+-.. ..|+....|.-.+.-.....|-.+|
T Consensus 211 ~~M~avDLGAcPGGWTyqLV-kr~m~V~aVDng~m-a~----sL~dt----g~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLV-KRNMRVYAVDNGPM-AQ----SLMDT----GQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred CCceeeecccCCCccchhhh-hcceEEEEeccchh-hh----hhhcc----cceeeeeccCcccccCCCCCceEEe
Confidence 88999999999999998887 45678999996542 21 22122 3566666666555323345665555
No 493
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=50.25 E-value=14 Score=32.44 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=36.6
Q ss_pred CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHH
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA 168 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~ 168 (217)
.+..+|=+|-|.|.+...+.. .+..++++|++.|+|++.|++.+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f 339 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYF 339 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhh
Confidence 566788888888988777764 44579999999999999999886
No 494
>PLN02427 UDP-apiose/xylose synthase
Probab=50.22 E-value=31 Score=29.22 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=43.8
Q ss_pred CCCeEEEECCcCCcchHhhhh----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CC--CCceeE
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VS--DASVDA 197 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~--~~sfD~ 197 (217)
++++||= -.|+|..+..+++ ..+.+|+++|.+...+....... ...+. .+++++.+|+.+.. +. -..+|+
T Consensus 13 ~~~~VlV-TGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~-~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICM-IGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPD-TVPWS-GRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEE-ECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccc-cccCC-CCeEEEEcCCCChHHHHHHhhcCCE
Confidence 5667884 4566766665554 33578999997765332211110 00111 36899999987642 11 124798
Q ss_pred EEecccc
Q 027913 198 VVGTLVL 204 (217)
Q Consensus 198 V~~~~~l 204 (217)
|+-....
T Consensus 90 ViHlAa~ 96 (386)
T PLN02427 90 TINLAAI 96 (386)
T ss_pred EEEcccc
Confidence 8866543
No 495
>PRK08628 short chain dehydrogenase; Provisional
Probab=50.05 E-value=79 Score=24.70 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913 125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----- 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----- 191 (217)
+++++|=.|++.| +...+++ ..+.++++++.++..++.. +.+...+ .++.++..|+.+.. +.
T Consensus 6 ~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 6 KDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRALQ---PRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678888886544 4444433 4567888898888766333 3333334 46788889886532 11
Q ss_pred CCceeEEEecccc
Q 027913 192 DASVDAVVGTLVL 204 (217)
Q Consensus 192 ~~sfD~V~~~~~l 204 (217)
-+..|.|+.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (258)
T PRK08628 81 FGRIDGLVNNAGV 93 (258)
T ss_pred cCCCCEEEECCcc
Confidence 1468988877653
No 496
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=49.81 E-value=82 Score=24.61 Aligned_cols=74 Identities=20% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
.++++|=.|++.|. ++..++ ..+.+|+.+|.++. .....+.+...+ .++.++..|+.+.. + .
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~-~~G~~v~~~~r~~~-~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAA-AEGARVVLVDRSEL-VHEVAAELRAAG---GEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCchH-HHHHHHHHHhcC---CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 56788888876552 233343 45778999998864 333333333333 35778888876531 1 1
Q ss_pred CCceeEEEeccc
Q 027913 192 DASVDAVVGTLV 203 (217)
Q Consensus 192 ~~sfD~V~~~~~ 203 (217)
-+.+|+++.+..
T Consensus 82 ~~~id~lv~nAg 93 (260)
T PRK12823 82 FGRIDVLINNVG 93 (260)
T ss_pred cCCCeEEEECCc
Confidence 146899887664
No 497
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=49.58 E-value=47 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCCeEEEECCcC-Cc-chHhhhhCCCCeEEEecCC
Q 027913 125 KAKKVLEIGIGT-GP-NLKYYAADTDVQVLGVDPN 157 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s 157 (217)
...+|+=+|||. |. .+..+++..-.+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 778999999983 43 3444554333479999988
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=49.50 E-value=80 Score=25.11 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=40.5
Q ss_pred CCCeEEEECCc-CCcc-hHhhhhCCCCeEEEecCCH-------------------HHHHHHHHHHHHcCCCCCCeEEEec
Q 027913 125 KAKKVLEIGIG-TGPN-LKYYAADTDVQVLGVDPNR-------------------KMEKYAQTAAVAAGLPLTNFKFLQA 183 (217)
Q Consensus 125 ~~~~vLDiGcG-~G~~-~~~l~~~~~~~v~gvD~s~-------------------~~l~~a~~~~~~~~~~~~~v~~~~~ 183 (217)
...+||=|||| .|.. +..|+...-.+++.+|... .-++.+++++.+.... -+++.+..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~-v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH-IAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC-CEEEEEec
Confidence 67899999998 4543 4445543334677765432 2344455555554421 23444443
Q ss_pred ccccccCC--CCceeEEEec
Q 027913 184 VGEAIPVS--DASVDAVVGT 201 (217)
Q Consensus 184 d~~~l~~~--~~sfD~V~~~ 201 (217)
.+...... -..||+|+..
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDC 129 (245)
T ss_pred cCCHHHHHHHHhcCCEEEec
Confidence 33321111 1469999864
No 499
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=49.45 E-value=25 Score=28.91 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=28.9
Q ss_pred CCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHH
Q 027913 125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQ 165 (217)
Q Consensus 125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~ 165 (217)
.+++|+=||.|. |..+...++..+.+|+++|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 688999999984 33333344466789999999987554443
No 500
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=49.44 E-value=63 Score=25.41 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S 191 (217)
Q Consensus 125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~ 191 (217)
+++++|=.|++.|. .+..++ ..|.+|++++.+++.++...+.. + .++.++..|+.+.. + .
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFL-AEGARVAVLERSAEKLASLRQRF---G---DHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHh---C---CcceEEEccCCCHHHHHHHHHHHHHh
Confidence 56788888876552 233333 45788999999987766554432 2 35678888876532 1 1
Q ss_pred CCceeEEEeccccc
Q 027913 192 DASVDAVVGTLVLC 205 (217)
Q Consensus 192 ~~sfD~V~~~~~l~ 205 (217)
-+..|+++.+..+.
T Consensus 78 ~g~id~li~~ag~~ 91 (263)
T PRK06200 78 FGKLDCFVGNAGIW 91 (263)
T ss_pred cCCCCEEEECCCCc
Confidence 24689998876653
Done!