Query 027914
Match_columns 217
No_of_seqs 115 out of 1185
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:23:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03381 agmatine_aguB N-carb 100.0 5.6E-46 1.2E-50 301.3 24.1 209 9-217 1-209 (279)
2 PLN02747 N-carbamolyputrescine 100.0 1E-44 2.2E-49 296.3 24.0 214 4-217 2-215 (296)
3 cd07587 ML_beta-AS mammalian-l 100.0 3.5E-44 7.6E-49 298.7 23.8 206 6-217 61-278 (363)
4 cd07568 ML_beta-AS_like mammal 100.0 1.9E-43 4.1E-48 287.7 23.2 206 6-217 1-215 (287)
5 cd07573 CPA N-carbamoylputresc 100.0 1.5E-42 3.3E-47 281.9 24.0 209 9-217 1-212 (284)
6 cd07579 nitrilase_1_R2 Second 100.0 9E-43 2E-47 282.0 22.2 194 10-217 1-207 (279)
7 PLN00202 beta-ureidopropionase 100.0 1.4E-42 3.1E-47 291.9 24.1 205 6-217 84-299 (405)
8 PRK10438 C-N hydrolase family 100.0 2.7E-42 5.9E-47 276.3 21.6 188 8-217 3-191 (256)
9 cd07564 nitrilases_CHs Nitrila 100.0 5.1E-42 1.1E-46 280.3 23.1 200 9-217 1-212 (297)
10 cd07583 nitrilase_5 Uncharacte 100.0 8.8E-42 1.9E-46 273.1 22.3 193 10-217 1-195 (253)
11 cd07584 nitrilase_6 Uncharacte 100.0 7.7E-42 1.7E-46 274.2 21.9 195 10-217 1-198 (258)
12 PLN02504 nitrilase 100.0 1.4E-41 3E-46 281.8 23.5 197 6-217 22-235 (346)
13 cd07567 biotinidase_like bioti 100.0 5.1E-42 1.1E-46 278.7 20.3 198 9-217 1-234 (299)
14 cd07576 R-amidase_like Pseudom 100.0 1.2E-41 2.7E-46 272.4 21.5 193 10-217 1-194 (254)
15 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.6E-42 3.5E-47 278.5 16.1 198 10-217 1-200 (261)
16 cd07580 nitrilase_2 Uncharacte 100.0 2.3E-41 5E-46 272.9 22.0 201 10-217 1-202 (268)
17 cd07581 nitrilase_3 Uncharacte 100.0 5.1E-41 1.1E-45 268.9 22.7 199 11-217 1-201 (255)
18 cd07572 nit Nit1, Nit 2, and r 100.0 4.6E-41 9.9E-46 270.6 22.3 198 10-217 1-206 (265)
19 PLN02798 nitrilase 100.0 1.1E-40 2.3E-45 271.2 23.2 202 4-217 6-217 (286)
20 cd07569 DCase N-carbamyl-D-ami 100.0 1.6E-40 3.4E-45 272.2 23.1 211 7-217 2-233 (302)
21 COG0388 Predicted amidohydrola 100.0 1.5E-40 3.3E-45 268.9 22.4 200 8-217 2-203 (274)
22 cd07565 aliphatic_amidase alip 100.0 2.7E-40 5.7E-45 269.0 22.9 194 9-217 1-205 (291)
23 cd07585 nitrilase_7 Uncharacte 100.0 2.1E-40 4.5E-45 266.3 22.0 195 10-217 1-196 (261)
24 cd07586 nitrilase_8 Uncharacte 100.0 2.3E-40 5E-45 267.2 20.4 197 10-217 1-202 (269)
25 cd07571 ALP_N-acyl_transferase 100.0 2.1E-40 4.5E-45 267.3 18.8 191 9-217 1-216 (270)
26 cd07577 Ph0642_like Pyrococcus 100.0 7.3E-40 1.6E-44 262.9 20.0 189 10-217 1-190 (259)
27 cd07575 Xc-1258_like Xanthomon 100.0 1.8E-39 4E-44 259.6 21.6 189 9-217 1-190 (252)
28 cd07197 nitrilase Nitrilase su 100.0 4E-39 8.6E-44 257.4 22.1 194 11-217 1-195 (253)
29 cd07578 nitrilase_1_R1 First n 100.0 4E-39 8.7E-44 258.5 22.1 193 9-217 1-196 (258)
30 cd07574 nitrilase_Rim1_like Un 100.0 4.6E-39 9.9E-44 261.0 20.1 198 9-217 1-206 (280)
31 PRK13981 NAD synthetase; Provi 100.0 5.6E-39 1.2E-43 281.2 20.9 194 9-217 1-199 (540)
32 cd07582 nitrilase_4 Uncharacte 100.0 2.1E-38 4.6E-43 258.7 22.2 201 10-217 2-226 (294)
33 cd07566 ScNTA1_like Saccharomy 100.0 2.1E-38 4.6E-43 257.7 21.4 206 10-217 1-246 (295)
34 PRK13286 amiE acylamide amidoh 100.0 5.7E-38 1.2E-42 259.5 22.1 196 6-217 10-218 (345)
35 PRK13287 amiF formamidase; Pro 100.0 2.1E-37 4.4E-42 255.7 23.6 197 6-217 11-217 (333)
36 KOG0807 Carbon-nitrogen hydrol 100.0 1.2E-38 2.7E-43 241.0 14.3 199 9-217 16-223 (295)
37 TIGR00546 lnt apolipoprotein N 100.0 7.9E-38 1.7E-42 264.5 17.2 194 6-217 157-376 (391)
38 PRK02628 nadE NAD synthetase; 100.0 3.8E-37 8.3E-42 274.7 19.8 201 6-217 10-233 (679)
39 PF00795 CN_hydrolase: Carbon- 100.0 6.7E-37 1.4E-41 234.0 17.4 173 10-183 1-186 (186)
40 PLN02339 NAD+ synthase (glutam 100.0 1E-35 2.2E-40 265.2 18.4 199 8-214 3-227 (700)
41 PRK00302 lnt apolipoprotein N- 100.0 1.7E-35 3.6E-40 257.7 17.7 193 7-217 218-436 (505)
42 PRK12291 apolipoprotein N-acyl 100.0 7.1E-34 1.5E-38 240.8 18.4 183 9-217 195-400 (418)
43 KOG0806 Carbon-nitrogen hydrol 100.0 4.8E-34 1.1E-38 225.4 14.7 209 5-217 10-227 (298)
44 PRK13825 conjugal transfer pro 100.0 1.9E-28 4E-33 205.2 19.5 187 8-217 185-385 (388)
45 COG0815 Lnt Apolipoprotein N-a 100.0 1.7E-28 3.6E-33 211.9 18.0 193 6-216 225-446 (518)
46 KOG0805 Carbon-nitrogen hydrol 100.0 1.2E-27 2.6E-32 182.1 17.9 197 5-217 14-228 (337)
47 KOG0808 Carbon-nitrogen hydrol 99.9 2.1E-24 4.5E-29 165.8 16.1 204 7-216 72-287 (387)
48 KOG2303 Predicted NAD synthase 99.6 5.9E-16 1.3E-20 128.9 4.6 173 5-184 1-202 (706)
49 cd07585 nitrilase_7 Uncharacte 85.8 6.9 0.00015 31.1 8.5 72 34-118 150-223 (261)
50 cd07565 aliphatic_amidase alip 85.1 9.2 0.0002 31.2 9.0 66 36-118 165-232 (291)
51 cd07576 R-amidase_like Pseudom 83.6 11 0.00023 29.8 8.6 65 36-117 154-220 (254)
52 PRK15018 1-acyl-sn-glycerol-3- 82.9 5.9 0.00013 31.5 6.8 56 21-91 120-175 (245)
53 cd07567 biotinidase_like bioti 80.4 9.5 0.00021 31.4 7.3 66 37-119 193-260 (299)
54 cd07580 nitrilase_2 Uncharacte 80.2 18 0.0004 28.8 8.9 70 36-116 156-227 (268)
55 cd07584 nitrilase_6 Uncharacte 80.0 17 0.00037 28.7 8.6 68 33-117 155-224 (258)
56 cd07570 GAT_Gln-NAD-synth Glut 77.4 19 0.0004 28.6 8.1 68 36-118 158-227 (261)
57 COG1646 Predicted phosphate-bi 77.0 35 0.00075 27.0 9.8 33 154-186 193-225 (240)
58 cd07586 nitrilase_8 Uncharacte 76.9 15 0.00033 29.2 7.5 72 36-117 155-228 (269)
59 PRK13286 amiE acylamide amidoh 75.8 27 0.00059 29.3 8.9 68 34-118 176-245 (345)
60 TIGR00530 AGP_acyltrn 1-acyl-s 75.3 14 0.0003 25.5 6.2 51 26-91 75-125 (130)
61 cd07587 ML_beta-AS mammalian-l 73.3 22 0.00047 30.1 7.8 64 37-116 238-319 (363)
62 PF01553 Acyltransferase: Acyl 72.4 13 0.00028 25.8 5.4 51 25-90 76-126 (132)
63 TIGR00542 hxl6Piso_put hexulos 72.3 23 0.0005 28.5 7.5 63 23-93 90-152 (279)
64 PF09587 PGA_cap: Bacterial ca 71.8 18 0.00039 28.7 6.6 69 143-216 121-221 (250)
65 cd07568 ML_beta-AS_like mammal 71.5 34 0.00074 27.6 8.4 69 34-118 172-245 (287)
66 cd07197 nitrilase Nitrilase su 71.3 30 0.00065 27.0 7.9 66 35-117 154-221 (253)
67 cd07572 nit Nit1, Nit 2, and r 71.2 21 0.00046 28.3 7.0 69 32-116 161-232 (265)
68 COG1941 FrhG Coenzyme F420-red 70.8 25 0.00054 27.9 6.9 83 7-100 2-91 (247)
69 smart00563 PlsC Phosphate acyl 70.7 14 0.00031 24.7 5.2 51 24-90 60-110 (118)
70 cd07581 nitrilase_3 Uncharacte 70.1 32 0.00069 27.1 7.8 68 33-117 156-223 (255)
71 PRK13981 NAD synthetase; Provi 69.3 34 0.00074 30.6 8.5 70 34-118 155-226 (540)
72 cd07582 nitrilase_4 Uncharacte 69.2 46 0.001 27.0 8.7 69 34-118 183-257 (294)
73 cd07583 nitrilase_5 Uncharacte 69.0 30 0.00064 27.3 7.4 69 32-117 151-221 (253)
74 cd07577 Ph0642_like Pyrococcus 68.9 42 0.0009 26.6 8.2 63 35-117 152-220 (259)
75 cd07573 CPA N-carbamoylputresc 68.8 47 0.001 26.6 8.7 77 33-117 160-242 (284)
76 TIGR03381 agmatine_aguB N-carb 68.8 42 0.00091 26.8 8.3 74 34-117 160-239 (279)
77 PRK09856 fructoselysine 3-epim 66.7 28 0.00061 27.8 6.9 63 22-92 85-147 (275)
78 PLN02747 N-carbamolyputrescine 66.1 48 0.001 26.9 8.2 75 33-118 165-250 (296)
79 PLN02504 nitrilase 65.3 39 0.00085 28.4 7.6 61 36-116 198-280 (346)
80 cd07988 LPLAT_ABO13168-like Ly 64.1 23 0.00051 26.1 5.5 34 40-91 95-128 (163)
81 PRK13210 putative L-xylulose 5 61.6 47 0.001 26.6 7.3 62 23-92 90-151 (284)
82 cd07990 LPLAT_LCLAT1-like Lyso 61.4 23 0.00051 26.7 5.2 50 24-92 86-137 (193)
83 cd07564 nitrilases_CHs Nitrila 60.1 55 0.0012 26.6 7.5 41 76-116 195-252 (297)
84 PF01784 NIF3: NIF3 (NGG1p int 59.0 23 0.00049 28.1 4.9 58 154-216 34-93 (241)
85 COG0388 Predicted amidohydrola 58.4 72 0.0016 25.5 7.9 64 38-117 164-230 (274)
86 cd07578 nitrilase_1_R1 First n 57.8 80 0.0017 24.9 8.0 65 34-117 156-222 (258)
87 PRK10438 C-N hydrolase family 57.7 54 0.0012 26.1 6.9 63 39-118 154-219 (256)
88 PLN00202 beta-ureidopropionase 57.5 70 0.0015 27.6 7.9 64 37-116 259-340 (405)
89 COG1121 ZnuC ABC-type Mn/Zn tr 57.3 21 0.00045 28.7 4.4 65 31-110 148-213 (254)
90 PLN02798 nitrilase 57.3 71 0.0015 25.8 7.7 64 38-117 178-244 (286)
91 COG1120 FepC ABC-type cobalami 57.2 20 0.00044 28.8 4.3 74 28-116 144-218 (258)
92 PF14488 DUF4434: Domain of un 56.6 67 0.0015 23.9 6.8 69 26-96 19-87 (166)
93 PF08821 CGGC: CGGC domain; I 56.6 59 0.0013 22.3 6.0 54 27-94 52-106 (107)
94 cd07986 LPLAT_ACT14924-like Ly 56.2 44 0.00096 25.6 6.0 56 24-91 83-140 (210)
95 PRK13209 L-xylulose 5-phosphat 56.0 71 0.0015 25.6 7.5 63 22-92 94-156 (283)
96 PF10087 DUF2325: Uncharacteri 55.8 27 0.00058 23.2 4.2 21 73-93 61-81 (97)
97 cd07579 nitrilase_1_R2 Second 54.9 70 0.0015 25.8 7.2 83 34-116 146-230 (279)
98 TIGR00486 YbgI_SA1388 dinuclea 54.6 54 0.0012 26.1 6.4 57 154-216 38-96 (249)
99 COG4175 ProV ABC-type proline/ 54.2 33 0.00071 28.8 5.1 70 33-117 175-245 (386)
100 PRK09997 hydroxypyruvate isome 54.2 82 0.0018 24.9 7.5 62 22-92 80-142 (258)
101 cd07993 LPLAT_DHAPAT-like Lyso 53.5 63 0.0014 24.7 6.5 26 27-52 88-113 (205)
102 PRK13287 amiF formamidase; Pro 53.3 1.3E+02 0.0028 25.1 8.8 68 34-118 175-244 (333)
103 COG1135 AbcC ABC-type metal io 52.7 22 0.00047 29.6 3.8 73 31-118 150-223 (339)
104 PF07355 GRDB: Glycine/sarcosi 52.5 48 0.001 27.9 5.8 60 150-216 48-116 (349)
105 PRK12677 xylose isomerase; Pro 52.2 1.5E+02 0.0032 25.4 9.0 26 23-48 110-136 (384)
106 PF02630 SCO1-SenC: SCO1/SenC; 51.9 97 0.0021 23.0 9.2 45 76-120 124-172 (174)
107 COG1131 CcmA ABC-type multidru 51.9 24 0.00053 28.8 4.1 69 35-118 149-218 (293)
108 smart00481 POLIIIAc DNA polyme 51.5 53 0.0011 19.9 5.6 46 28-94 16-61 (67)
109 COG3638 ABC-type phosphate/pho 51.1 30 0.00066 27.6 4.3 70 32-116 157-227 (258)
110 PF01261 AP_endonuc_2: Xylose 51.0 78 0.0017 23.6 6.7 64 23-92 67-130 (213)
111 PTZ00261 acyltransferase; Prov 50.8 60 0.0013 27.5 6.2 52 25-90 200-251 (355)
112 cd00019 AP2Ec AP endonuclease 50.7 67 0.0015 25.7 6.5 62 22-92 80-141 (279)
113 cd01821 Rhamnogalacturan_acety 49.8 86 0.0019 23.5 6.7 61 22-90 89-149 (198)
114 PRK10799 metal-binding protein 49.2 57 0.0012 25.9 5.8 57 154-216 37-95 (247)
115 KOG2792 Putative cytochrome C 48.7 30 0.00066 27.8 3.9 99 20-122 153-261 (280)
116 cd03293 ABC_NrtD_SsuB_transpor 47.6 49 0.0011 25.4 5.1 45 74-118 169-215 (220)
117 PLN02901 1-acyl-sn-glycerol-3- 46.9 85 0.0019 24.2 6.3 53 24-92 107-159 (214)
118 PRK11629 lolD lipoprotein tran 46.8 40 0.00087 26.2 4.5 45 74-119 183-227 (233)
119 KOG0806 Carbon-nitrogen hydrol 46.1 23 0.0005 29.1 3.1 30 97-126 122-151 (298)
120 cd07571 ALP_N-acyl_transferase 45.0 1.2E+02 0.0026 24.2 7.2 65 34-118 170-234 (270)
121 PF13342 Toprim_Crpt: C-termin 44.8 61 0.0013 19.8 4.1 39 76-115 18-56 (62)
122 PF02677 DUF208: Uncharacteriz 44.4 28 0.00062 26.3 3.1 55 156-216 86-140 (176)
123 TIGR01917 gly_red_sel_B glycin 44.3 74 0.0016 27.6 5.8 61 149-216 43-112 (431)
124 TIGR01918 various_sel_PB selen 43.5 76 0.0016 27.5 5.8 61 149-216 43-112 (431)
125 TIGR02314 ABC_MetN D-methionin 42.8 43 0.00094 28.1 4.3 67 36-117 154-221 (343)
126 cd07381 MPP_CapA CapA and rela 42.6 1.2E+02 0.0026 23.7 6.7 43 143-186 123-186 (239)
127 TIGR01184 ntrCD nitrate transp 42.6 49 0.0011 25.7 4.4 42 74-116 152-194 (230)
128 cd01423 MGS_CPS_I_III Methylgl 42.5 13 0.00028 25.6 1.0 45 164-215 61-105 (116)
129 COG1225 Bcp Peroxiredoxin [Pos 42.0 48 0.001 24.5 4.0 22 102-123 119-140 (157)
130 cd01822 Lysophospholipase_L1_l 42.0 1.1E+02 0.0023 22.1 6.1 69 10-91 66-139 (177)
131 cd03256 ABC_PhnC_transporter A 42.0 54 0.0012 25.5 4.6 42 74-116 182-224 (241)
132 cd07992 LPLAT_AAK14816-like Ly 41.6 42 0.00091 25.6 3.8 26 27-52 97-122 (203)
133 TIGR03864 PQQ_ABC_ATP ABC tran 41.4 79 0.0017 24.6 5.5 42 74-116 170-211 (236)
134 cd01424 MGS_CPS_II Methylglyox 40.7 27 0.00059 23.7 2.4 46 162-216 55-100 (110)
135 cd03255 ABC_MJ0796_Lo1CDE_FtsE 40.3 58 0.0013 24.9 4.5 40 74-114 178-217 (218)
136 cd01832 SGNH_hydrolase_like_1 40.1 1.4E+02 0.0031 21.7 6.5 74 10-90 69-148 (185)
137 COG1126 GlnQ ABC-type polar am 40.0 37 0.00081 26.8 3.2 74 30-119 144-218 (240)
138 PRK13650 cbiO cobalt transport 39.8 52 0.0011 26.5 4.3 42 74-116 178-219 (279)
139 PLN02274 inosine-5'-monophosph 39.6 1.1E+02 0.0024 27.3 6.5 57 151-215 237-293 (505)
140 TIGR02211 LolD_lipo_ex lipopro 39.5 57 0.0012 25.0 4.4 41 74-115 179-219 (221)
141 COG4598 HisP ABC-type histidin 39.1 58 0.0013 25.1 4.0 51 30-94 160-210 (256)
142 PRK10247 putative ABC transpor 39.0 58 0.0013 25.2 4.3 41 74-114 175-215 (225)
143 COG1134 TagH ABC-type polysacc 38.6 24 0.00051 28.2 2.0 62 39-115 164-225 (249)
144 cd03297 ABC_ModC_molybdenum_tr 38.3 63 0.0014 24.7 4.4 41 74-115 169-210 (214)
145 PTZ00314 inosine-5'-monophosph 37.9 2.9E+02 0.0064 24.6 9.1 58 150-215 229-286 (495)
146 TIGR00256 D-tyrosyl-tRNA(Tyr) 37.8 89 0.0019 22.8 4.7 74 20-93 36-123 (145)
147 COG1066 Sms Predicted ATP-depe 37.7 2.8E+02 0.0061 24.3 9.3 76 22-110 153-242 (456)
148 PRK13635 cbiO cobalt transport 37.6 60 0.0013 26.2 4.3 42 74-116 178-219 (279)
149 COG1712 Predicted dinucleotide 37.3 1.2E+02 0.0027 24.1 5.7 49 25-92 69-117 (255)
150 cd03259 ABC_Carb_Solutes_like 37.2 72 0.0016 24.3 4.6 41 74-115 168-209 (213)
151 PRK10528 multifunctional acyl- 37.0 1.8E+02 0.0039 21.8 6.9 68 10-90 73-145 (191)
152 smart00037 CNX Connexin homolo 37.0 16 0.00034 19.4 0.5 9 157-165 22-30 (34)
153 PRK13633 cobalt transporter AT 36.5 80 0.0017 25.4 4.9 42 74-116 182-223 (280)
154 smart00642 Aamy Alpha-amylase 36.4 1.8E+02 0.0038 21.6 6.6 70 25-98 17-94 (166)
155 cd03298 ABC_ThiQ_thiamine_tran 36.0 76 0.0016 24.1 4.5 42 74-116 166-208 (211)
156 TIGR00936 ahcY adenosylhomocys 36.0 1.4E+02 0.0029 25.9 6.3 36 148-183 30-65 (406)
157 TIGR02982 heterocyst_DevA ABC 35.1 65 0.0014 24.7 4.0 41 74-115 179-219 (220)
158 CHL00200 trpA tryptophan synth 34.9 1.2E+02 0.0025 24.5 5.5 30 155-184 205-234 (263)
159 PF13380 CoA_binding_2: CoA bi 34.8 1.4E+02 0.0031 20.5 5.3 45 25-93 64-108 (116)
160 cd01828 sialate_O-acetylestera 34.8 1.7E+02 0.0038 21.0 6.5 72 10-91 50-128 (169)
161 cd03257 ABC_NikE_OppD_transpor 34.7 73 0.0016 24.5 4.3 42 74-116 183-225 (228)
162 KOG0807 Carbon-nitrogen hydrol 34.7 80 0.0017 25.3 4.3 69 38-122 184-255 (295)
163 PRK10584 putative ABC transpor 34.6 66 0.0014 24.8 4.0 41 74-115 184-224 (228)
164 cd00401 AdoHcyase S-adenosyl-L 34.5 95 0.0021 26.9 5.2 36 148-183 34-69 (413)
165 PRK13640 cbiO cobalt transport 34.5 73 0.0016 25.7 4.4 42 74-116 181-222 (282)
166 cd00950 DHDPS Dihydrodipicolin 34.3 99 0.0021 24.9 5.1 51 25-92 80-131 (284)
167 PRK13648 cbiO cobalt transport 34.2 94 0.002 24.8 5.0 42 74-116 180-221 (269)
168 TIGR02315 ABC_phnC phosphonate 34.2 95 0.0021 24.2 4.9 42 74-116 183-225 (243)
169 TIGR00674 dapA dihydrodipicoli 34.1 1.1E+02 0.0023 24.9 5.2 52 24-92 77-129 (285)
170 cd03258 ABC_MetN_methionine_tr 34.0 77 0.0017 24.5 4.3 42 74-116 178-220 (233)
171 PF02844 GARS_N: Phosphoribosy 33.8 34 0.00074 23.2 1.9 25 25-49 47-72 (100)
172 cd02072 Glm_B12_BD B12 binding 33.7 1.8E+02 0.0038 20.7 5.8 23 30-52 40-62 (128)
173 PRK07534 methionine synthase I 33.7 2.8E+02 0.006 23.3 7.7 56 22-98 126-181 (336)
174 TIGR03234 OH-pyruv-isom hydrox 33.7 2.3E+02 0.005 22.1 7.1 61 23-92 80-141 (254)
175 cd03296 ABC_CysA_sulfate_impor 33.6 86 0.0019 24.4 4.5 42 74-116 174-216 (239)
176 PRK13632 cbiO cobalt transport 33.6 1E+02 0.0022 24.6 5.1 42 74-116 180-221 (271)
177 PF05221 AdoHcyase: S-adenosyl 33.6 1.2E+02 0.0026 24.6 5.2 35 149-183 42-76 (268)
178 cd03012 TlpA_like_DipZ_like Tl 33.4 1.6E+02 0.0035 20.2 7.8 89 11-118 25-121 (126)
179 cd04501 SGNH_hydrolase_like_4 33.2 1.9E+02 0.0042 21.1 6.8 77 9-90 60-141 (183)
180 COG0499 SAM1 S-adenosylhomocys 32.6 93 0.002 26.6 4.6 37 148-184 43-79 (420)
181 COG4586 ABC-type uncharacteriz 32.5 1.6E+02 0.0035 24.3 5.7 75 28-117 162-237 (325)
182 TIGR03005 ectoine_ehuA ectoine 32.3 86 0.0019 24.7 4.4 42 74-116 184-226 (252)
183 cd07254 Glo_EDI_BRP_like_20 Th 32.2 1.5E+02 0.0033 19.7 5.2 45 76-120 72-116 (120)
184 PF09391 DUF2000: Protein of u 32.1 59 0.0013 23.3 3.0 29 24-52 61-89 (133)
185 PRK13652 cbiO cobalt transport 32.1 86 0.0019 25.2 4.4 42 74-116 175-217 (277)
186 cd03301 ABC_MalK_N The N-termi 32.1 87 0.0019 23.8 4.3 42 74-116 168-210 (213)
187 PRK13642 cbiO cobalt transport 32.0 79 0.0017 25.4 4.2 42 74-116 178-219 (277)
188 PRK10851 sulfate/thiosulfate t 31.9 77 0.0017 26.7 4.2 67 36-117 150-217 (353)
189 cd00952 CHBPH_aldolase Trans-o 31.9 1.3E+02 0.0027 24.9 5.4 51 25-92 88-140 (309)
190 cd03223 ABCD_peroxisomal_ALDP 31.9 2E+02 0.0044 20.9 7.0 64 32-113 101-164 (166)
191 cd03216 ABC_Carb_Monos_I This 31.8 61 0.0013 23.7 3.2 69 32-116 92-161 (163)
192 cd03261 ABC_Org_Solvent_Resist 31.4 1.1E+02 0.0024 23.7 4.8 42 74-116 174-216 (235)
193 TIGR01277 thiQ thiamine ABC tr 30.9 1.1E+02 0.0025 23.2 4.8 42 74-116 166-208 (213)
194 PRK05273 D-tyrosyl-tRNA(Tyr) d 30.9 1.5E+02 0.0032 21.7 4.9 56 38-93 68-123 (147)
195 PRK13634 cbiO cobalt transport 30.8 83 0.0018 25.5 4.1 42 74-116 183-225 (290)
196 PRK05476 S-adenosyl-L-homocyst 30.6 2.2E+02 0.0047 24.9 6.8 36 148-183 46-81 (425)
197 cd07983 LPLAT_DUF374-like Lyso 30.5 1.3E+02 0.0028 22.4 5.0 41 36-94 93-133 (189)
198 PRK11153 metN DL-methionine tr 30.5 86 0.0019 26.2 4.3 42 74-116 178-220 (343)
199 PF10042 DUF2278: Uncharacteri 30.4 1E+02 0.0022 24.0 4.2 35 19-53 114-148 (206)
200 TIGR02631 xylA_Arthro xylose i 30.3 3.1E+02 0.0067 23.5 7.6 65 23-92 111-178 (382)
201 cd07574 nitrilase_Rim1_like Un 30.1 2.8E+02 0.0061 22.0 7.4 45 34-94 163-207 (280)
202 cd03018 PRX_AhpE_like Peroxire 30.1 2E+02 0.0043 20.2 6.4 27 21-47 43-69 (149)
203 PRK09984 phosphonate/organopho 30.0 1.1E+02 0.0024 24.2 4.7 42 74-116 190-232 (262)
204 PRK11756 exonuclease III; Prov 30.0 1.1E+02 0.0023 24.4 4.6 26 23-51 12-37 (268)
205 cd00411 Asparaginase Asparagin 30.0 2E+02 0.0044 23.9 6.3 59 151-217 210-268 (323)
206 PRK11300 livG leucine/isoleuci 29.9 99 0.0022 24.3 4.4 42 74-116 191-233 (255)
207 TIGR00262 trpA tryptophan synt 29.6 1.8E+02 0.0038 23.3 5.7 30 155-184 201-230 (256)
208 cd05562 Peptidases_S53_like Pe 29.5 2.9E+02 0.0062 22.3 7.0 55 26-94 76-130 (275)
209 PF02569 Pantoate_ligase: Pant 29.5 31 0.00067 28.2 1.3 36 14-49 60-95 (280)
210 PRK09437 bcp thioredoxin-depen 29.4 2.1E+02 0.0046 20.3 8.9 27 21-47 45-71 (154)
211 PRK13637 cbiO cobalt transport 29.4 97 0.0021 25.1 4.3 42 74-116 182-224 (287)
212 cd03265 ABC_DrrA DrrA is the A 29.4 94 0.002 23.8 4.1 42 74-116 169-211 (220)
213 COG4100 Cystathionine beta-lya 29.3 79 0.0017 26.3 3.6 49 3-51 160-210 (416)
214 TIGR02770 nickel_nikD nickel i 29.3 97 0.0021 24.0 4.2 42 74-116 163-205 (230)
215 PRK08633 2-acyl-glycerophospho 29.2 1.4E+02 0.0031 29.0 6.1 48 30-92 501-548 (1146)
216 PF01248 Ribosomal_L7Ae: Ribos 29.1 1.1E+02 0.0023 20.0 3.8 43 164-216 21-63 (95)
217 PRK11432 fbpC ferric transport 28.9 93 0.002 26.2 4.2 43 74-117 174-217 (351)
218 cd06551 LPLAT Lysophospholipid 28.8 2.3E+02 0.0051 20.6 7.5 50 33-96 93-143 (187)
219 cd07491 Peptidases_S8_7 Peptid 28.7 2.7E+02 0.0058 22.0 6.6 25 25-49 87-111 (247)
220 cd03226 ABC_cobalt_CbiO_domain 28.7 57 0.0012 24.7 2.7 40 74-115 164-204 (205)
221 cd03267 ABC_NatA_like Similar 28.3 97 0.0021 24.2 4.0 41 74-115 191-232 (236)
222 PF00701 DHDPS: Dihydrodipicol 28.2 1.8E+02 0.0039 23.5 5.7 51 25-92 81-132 (289)
223 PTZ00075 Adenosylhomocysteinas 28.2 1.2E+02 0.0027 26.8 4.8 36 148-183 43-78 (476)
224 COG0566 SpoU rRNA methylases [ 28.2 1.8E+02 0.0039 23.4 5.5 71 23-97 120-193 (260)
225 TIGR01766 tspaseT_teng_C trans 28.2 1.6E+02 0.0035 18.5 5.3 61 30-92 14-75 (82)
226 TIGR02323 CP_lyasePhnK phospho 28.2 1.1E+02 0.0024 24.0 4.4 42 74-116 186-228 (253)
227 PRK14014 putative acyltransfer 28.1 74 0.0016 26.2 3.4 26 26-51 160-185 (301)
228 cd03295 ABC_OpuCA_Osmoprotecti 27.9 1.3E+02 0.0029 23.4 4.7 42 74-116 173-215 (242)
229 TIGR03855 NAD_NadX aspartate d 27.8 2.6E+02 0.0056 22.0 6.3 49 27-94 48-96 (229)
230 PRK10253 iron-enterobactin tra 27.8 1.1E+02 0.0023 24.5 4.2 66 36-116 157-223 (265)
231 TIGR01187 potA spermidine/putr 27.7 1E+02 0.0022 25.6 4.2 43 74-117 138-181 (325)
232 COG1603 RPP1 RNase P/RNase MRP 27.7 2E+02 0.0044 22.7 5.5 43 33-94 90-133 (229)
233 PF03652 UPF0081: Uncharacteri 27.6 2.3E+02 0.005 20.2 6.5 68 145-216 5-92 (135)
234 cd02968 SCO SCO (an acronym fo 27.4 60 0.0013 22.7 2.5 16 105-120 126-141 (142)
235 PRK11650 ugpC glycerol-3-phosp 27.4 1.1E+02 0.0023 25.9 4.3 43 74-117 172-215 (356)
236 PRK10771 thiQ thiamine transpo 27.3 1.2E+02 0.0026 23.5 4.3 42 74-116 167-209 (232)
237 cd07991 LPLAT_LPCAT1-like Lyso 27.2 86 0.0019 24.0 3.5 14 39-52 96-109 (211)
238 cd01994 Alpha_ANH_like_IV This 27.1 2.8E+02 0.0061 21.1 6.6 21 76-96 103-123 (194)
239 PRK03170 dihydrodipicolinate s 27.1 1.7E+02 0.0037 23.7 5.4 52 24-92 80-132 (292)
240 PRK13645 cbiO cobalt transport 27.1 1.2E+02 0.0026 24.6 4.4 42 74-116 188-230 (289)
241 PF02548 Pantoate_transf: Keto 27.0 89 0.0019 25.3 3.5 31 150-183 15-45 (261)
242 TIGR03415 ABC_choXWV_ATP choli 27.0 1E+02 0.0023 26.3 4.2 42 74-116 202-244 (382)
243 PRK11701 phnK phosphonate C-P 27.0 1.2E+02 0.0026 24.0 4.4 41 75-116 190-231 (258)
244 smart00870 Asparaginase Aspara 27.0 2.1E+02 0.0046 23.7 5.9 59 151-217 212-270 (323)
245 KOG1505 Lysophosphatidic acid 26.8 89 0.0019 26.4 3.7 26 24-50 136-161 (346)
246 PRK15112 antimicrobial peptide 26.7 1.1E+02 0.0023 24.5 4.0 42 74-116 187-229 (267)
247 cd08362 BphC5-RrK37_N_like N-t 26.7 1.9E+02 0.0042 19.0 5.4 45 74-118 70-114 (120)
248 PRK14250 phosphate ABC transpo 26.7 1.3E+02 0.0029 23.4 4.6 42 74-116 169-211 (241)
249 PRK13636 cbiO cobalt transport 26.6 1.2E+02 0.0026 24.5 4.3 42 74-116 179-221 (283)
250 TIGR03265 PhnT2 putative 2-ami 26.5 1.1E+02 0.0024 25.8 4.2 44 74-118 172-216 (353)
251 COG1136 SalX ABC-type antimicr 26.5 1.3E+02 0.0027 23.8 4.2 69 31-114 151-219 (226)
252 cd03266 ABC_NatA_sodium_export 26.4 88 0.0019 23.9 3.4 41 74-116 174-215 (218)
253 PRK13646 cbiO cobalt transport 26.4 1.2E+02 0.0025 24.6 4.3 42 74-116 183-225 (286)
254 PLN02494 adenosylhomocysteinas 26.3 1.5E+02 0.0032 26.3 5.0 36 148-183 44-79 (477)
255 TIGR03258 PhnT 2-aminoethylpho 26.1 1.2E+02 0.0025 25.8 4.3 67 36-117 151-219 (362)
256 PRK11614 livF leucine/isoleuci 25.9 98 0.0021 24.0 3.7 41 74-116 175-216 (237)
257 cd03240 ABC_Rad50 The catalyti 25.8 1.2E+02 0.0027 23.1 4.1 67 33-113 132-199 (204)
258 PRK09452 potA putrescine/sperm 25.7 1.1E+02 0.0024 26.0 4.2 43 74-117 182-225 (375)
259 cd03214 ABC_Iron-Siderophores_ 25.7 1.4E+02 0.0031 22.1 4.3 69 33-116 108-177 (180)
260 cd03224 ABC_TM1139_LivF_branch 25.7 1.1E+02 0.0025 23.3 4.0 41 74-116 170-211 (222)
261 PRK11247 ssuB aliphatic sulfon 25.7 1.2E+02 0.0026 24.2 4.1 42 74-116 171-213 (257)
262 PLN02591 tryptophan synthase 25.5 2.5E+02 0.0055 22.5 5.9 32 153-184 190-221 (250)
263 PF09818 ABC_ATPase: Predicted 25.5 2.7E+02 0.0058 24.5 6.3 57 32-90 332-391 (448)
264 cd03294 ABC_Pro_Gly_Bertaine T 25.2 1.3E+02 0.0028 24.0 4.3 42 74-116 198-240 (269)
265 PRK09536 btuD corrinoid ABC tr 25.2 79 0.0017 27.2 3.2 41 74-116 177-218 (402)
266 PRK10418 nikD nickel transport 25.1 1.1E+02 0.0024 24.1 3.9 42 74-116 178-220 (254)
267 cd03218 ABC_YhbG The ABC trans 25.1 1.2E+02 0.0026 23.4 4.0 41 74-116 171-212 (232)
268 TIGR00629 uvde UV damage endon 25.0 4.1E+02 0.0088 22.2 7.3 65 23-92 48-112 (312)
269 PRK11000 maltose/maltodextrin 24.8 1.3E+02 0.0027 25.6 4.3 43 74-117 171-214 (369)
270 smart00518 AP2Ec AP endonuclea 24.8 3.3E+02 0.0071 21.5 6.6 25 22-46 79-103 (273)
271 TIGR00960 3a0501s02 Type II (G 24.8 86 0.0019 23.9 3.1 39 74-114 176-215 (216)
272 cd07266 HPCD_N_class_II N-term 24.8 2E+02 0.0044 19.1 4.7 44 74-118 72-115 (121)
273 COG1636 Uncharacterized protei 24.8 52 0.0011 25.2 1.7 44 155-204 91-134 (204)
274 cd03219 ABC_Mj1267_LivG_branch 24.7 99 0.0021 23.9 3.5 41 74-116 181-222 (236)
275 PF13788 DUF4180: Domain of un 24.7 2.5E+02 0.0054 19.6 6.8 45 7-53 4-48 (113)
276 TIGR02142 modC_ABC molybdenum 24.6 1.4E+02 0.003 25.1 4.5 43 74-117 169-212 (354)
277 cd03246 ABCC_Protease_Secretio 24.5 1.2E+02 0.0025 22.3 3.7 69 30-114 104-172 (173)
278 PRK13111 trpA tryptophan synth 24.4 2.5E+02 0.0054 22.6 5.7 30 155-185 203-232 (258)
279 PRK10575 iron-hydroxamate tran 24.4 1.4E+02 0.003 23.8 4.3 42 74-116 185-227 (265)
280 cd00532 MGS-like MGS-like doma 24.3 63 0.0014 22.1 2.0 47 163-215 56-103 (112)
281 PRK10908 cell division protein 24.2 91 0.002 23.9 3.2 41 74-116 175-216 (222)
282 PRK10419 nikE nickel transport 24.2 1.2E+02 0.0025 24.3 3.9 42 74-116 189-231 (268)
283 TIGR02769 nickel_nikE nickel i 24.2 1.6E+02 0.0034 23.5 4.6 43 74-117 188-231 (265)
284 PRK11831 putative ABC transpor 24.1 1.5E+02 0.0033 23.6 4.5 42 74-116 181-223 (269)
285 TIGR03569 NeuB_NnaB N-acetylne 24.1 2.2E+02 0.0047 23.9 5.4 72 23-96 12-98 (329)
286 KOG2733 Uncharacterized membra 24.1 1.5E+02 0.0033 25.4 4.4 61 156-217 66-143 (423)
287 PRK10200 putative racemase; Pr 24.0 1.3E+02 0.0029 23.6 4.0 22 164-185 65-86 (230)
288 COG2100 Predicted Fe-S oxidore 23.9 2E+02 0.0043 24.3 5.0 48 22-87 237-284 (414)
289 PF06838 Met_gamma_lyase: Meth 23.9 1.2E+02 0.0027 25.9 3.9 45 7-51 153-199 (403)
290 cd03260 ABC_PstB_phosphate_tra 23.9 1.1E+02 0.0023 23.6 3.5 40 74-116 179-219 (227)
291 cd03232 ABC_PDR_domain2 The pl 23.7 1.6E+02 0.0036 22.0 4.4 69 33-116 119-189 (192)
292 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 23.7 1E+02 0.0022 23.9 3.3 41 74-116 180-221 (224)
293 COG4555 NatA ABC-type Na+ tran 23.6 1.1E+02 0.0024 24.1 3.3 69 34-118 145-214 (245)
294 PRK11144 modC molybdate transp 23.5 1.5E+02 0.0033 24.8 4.6 43 74-117 166-209 (352)
295 PF01081 Aldolase: KDPG and KH 23.5 2E+02 0.0044 22.1 4.8 38 32-95 72-109 (196)
296 TIGR00968 3a0106s01 sulfate AB 23.4 1.6E+02 0.0035 22.9 4.5 42 74-116 168-210 (237)
297 PRK11248 tauB taurine transpor 23.3 1.7E+02 0.0036 23.2 4.6 43 74-116 166-210 (255)
298 PRK10938 putative molybdenum t 23.3 2.4E+02 0.0051 24.8 5.9 66 36-116 415-482 (490)
299 PRK09493 glnQ glutamine ABC tr 23.3 1.2E+02 0.0025 23.7 3.6 41 74-116 174-215 (240)
300 PRK13301 putative L-aspartate 23.2 3E+02 0.0065 22.4 5.9 47 29-94 75-123 (267)
301 COG1127 Ttg2A ABC-type transpo 23.2 3.9E+02 0.0085 21.6 6.3 71 31-116 154-225 (263)
302 cd03299 ABC_ModC_like Archeal 23.1 1.7E+02 0.0036 22.7 4.5 42 74-116 167-209 (235)
303 PRK10619 histidine/lysine/argi 23.0 1E+02 0.0023 24.3 3.3 40 75-116 191-231 (257)
304 COG5322 Predicted dehydrogenas 22.9 1.9E+02 0.0042 23.8 4.6 45 5-49 57-116 (351)
305 cd00951 KDGDH 5-dehydro-4-deox 22.8 2.3E+02 0.005 23.0 5.4 51 25-91 79-129 (289)
306 COG0159 TrpA Tryptophan syntha 22.7 2.6E+02 0.0057 22.6 5.5 29 155-184 208-236 (265)
307 COG0708 XthA Exonuclease III [ 22.7 1.6E+02 0.0036 23.7 4.3 37 9-51 1-37 (261)
308 PRK09473 oppD oligopeptide tra 22.7 1.3E+02 0.0029 25.0 4.0 43 74-117 199-242 (330)
309 TIGR00067 glut_race glutamate 22.6 1.5E+02 0.0032 23.7 4.1 19 165-183 51-70 (251)
310 PRK11607 potG putrescine trans 22.4 1.5E+02 0.0032 25.3 4.3 42 75-117 188-230 (377)
311 PRK09989 hypothetical protein; 22.4 3.9E+02 0.0084 21.0 7.0 61 22-92 80-142 (258)
312 COG3845 ABC-type uncharacteriz 22.4 93 0.002 27.6 3.0 68 38-120 156-223 (501)
313 COG5225 RRS1 Uncharacterized p 22.3 2.7E+02 0.006 20.2 4.8 55 24-89 46-103 (172)
314 cd00984 DnaB_C DnaB helicase C 22.3 2.8E+02 0.006 21.4 5.6 62 26-94 108-170 (242)
315 PRK11264 putative amino-acid A 22.2 1.4E+02 0.003 23.4 3.8 40 75-116 183-223 (250)
316 PTZ00253 tryparedoxin peroxida 22.2 1.8E+02 0.0039 22.0 4.4 32 80-117 110-141 (199)
317 cd07945 DRE_TIM_CMS Leptospira 22.2 4E+02 0.0086 21.7 6.5 35 20-54 108-142 (280)
318 cd00563 Dtyr_deacylase D-Tyros 22.1 2.4E+02 0.0051 20.6 4.6 52 39-90 69-120 (145)
319 COG2401 ABC-type ATPase fused 22.1 1.6E+02 0.0035 25.9 4.3 53 32-98 517-569 (593)
320 PRK11022 dppD dipeptide transp 22.0 1.5E+02 0.0033 24.6 4.2 42 74-116 191-233 (326)
321 cd03268 ABC_BcrA_bacitracin_re 21.8 1.3E+02 0.0028 22.7 3.6 41 74-116 164-205 (208)
322 PRK09461 ansA cytoplasmic aspa 21.5 3.3E+02 0.0072 22.8 6.1 60 151-217 210-270 (335)
323 PRK00865 glutamate racemase; P 21.5 1.7E+02 0.0037 23.4 4.3 20 164-183 57-76 (261)
324 PF02126 PTE: Phosphotriestera 21.4 3.5E+02 0.0075 22.4 6.1 52 22-93 33-84 (308)
325 COG1929 Glycerate kinase [Carb 21.4 2.2E+02 0.0049 24.2 4.9 39 39-92 283-321 (378)
326 PRK13651 cobalt transporter AT 21.4 1.1E+02 0.0023 25.2 3.2 41 74-116 203-244 (305)
327 cd03215 ABC_Carb_Monos_II This 21.3 1.2E+02 0.0026 22.5 3.2 79 20-114 93-181 (182)
328 TIGR01978 sufC FeS assembly AT 21.0 1.8E+02 0.0039 22.5 4.3 41 74-116 182-224 (243)
329 PRK06015 keto-hydroxyglutarate 20.9 2.4E+02 0.0052 21.8 4.8 38 32-95 68-105 (201)
330 PRK13647 cbiO cobalt transport 20.9 1.2E+02 0.0026 24.4 3.3 41 74-116 176-217 (274)
331 PRK13536 nodulation factor exp 20.8 1.1E+02 0.0024 25.6 3.2 66 36-117 186-252 (340)
332 TIGR03410 urea_trans_UrtE urea 20.8 1.9E+02 0.0042 22.2 4.4 42 74-116 169-211 (230)
333 PRK11231 fecE iron-dicitrate t 20.8 1.5E+02 0.0032 23.4 3.8 41 74-116 176-217 (255)
334 cd03300 ABC_PotA_N PotA is an 20.8 1.7E+02 0.0037 22.6 4.1 41 74-115 168-209 (232)
335 cd03217 ABC_FeS_Assembly ABC-t 20.8 1.5E+02 0.0032 22.4 3.7 68 33-116 115-184 (200)
336 TIGR02482 PFKA_ATP 6-phosphofr 20.7 2.1E+02 0.0046 23.6 4.7 14 37-50 181-194 (301)
337 COG0414 PanC Panthothenate syn 20.7 74 0.0016 25.9 2.0 38 11-48 57-94 (285)
338 TIGR00683 nanA N-acetylneurami 20.7 2.9E+02 0.0062 22.5 5.5 55 25-95 81-137 (290)
339 cd03230 ABC_DR_subfamily_A Thi 20.7 1.2E+02 0.0025 22.3 3.0 67 32-114 105-172 (173)
340 PRK08043 bifunctional acyl-[ac 20.6 2.2E+02 0.0047 26.4 5.3 41 35-90 92-132 (718)
341 PRK13644 cbiO cobalt transport 20.6 1.6E+02 0.0035 23.6 4.0 41 74-116 174-214 (274)
342 KOG1432 Predicted DNA repair e 20.6 2.6E+02 0.0055 23.8 5.0 57 157-216 82-139 (379)
343 PRK15093 antimicrobial peptide 20.5 1.5E+02 0.0033 24.6 3.9 42 74-116 196-238 (330)
344 PF12681 Glyoxalase_2: Glyoxal 20.4 2.5E+02 0.0054 18.0 6.5 40 76-117 67-106 (108)
345 PTZ00056 glutathione peroxidas 20.4 3.9E+02 0.0085 20.3 9.7 15 105-119 147-161 (199)
346 TIGR03269 met_CoM_red_A2 methy 20.3 1.9E+02 0.0042 25.6 4.7 42 74-116 206-248 (520)
347 PRK15439 autoinducer 2 ABC tra 20.3 1.6E+02 0.0035 26.1 4.2 43 74-118 441-484 (510)
348 TIGR01182 eda Entner-Doudoroff 20.3 2.6E+02 0.0056 21.7 4.8 37 33-95 73-109 (204)
349 PRK03892 ribonuclease P protei 20.3 3.2E+02 0.007 21.4 5.2 40 36-94 98-137 (216)
350 TIGR00640 acid_CoA_mut_C methy 20.0 3.3E+02 0.0072 19.3 5.4 20 31-50 44-63 (132)
351 COG1504 Uncharacterized conser 20.0 3.2E+02 0.0069 19.0 5.2 89 98-205 14-110 (121)
No 1
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=5.6e-46 Score=301.32 Aligned_cols=209 Identities=71% Similarity=1.216 Sum_probs=183.6
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 9 ~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
||||++|+++.+|+++|++++.+++++|+++|+|||||||++++||.+.+....+...+++...++..+.++++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 68999999988899999999999999999999999999999999998765433344555544445789999999999999
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
+|++|+++++++++||++++++++|+++..|+|+||+..+.+.|..+|++|+..+.+|+++++|+|++||||++||+..+
T Consensus 81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r 160 (279)
T TIGR03381 81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR 160 (279)
T ss_pred EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence 99999998888899999999999999999999999987655678889999985578999999999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++++|+|+|++|++|+..++........+|..+.++||+||++++|+|
T Consensus 161 ~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~a 209 (279)
T TIGR03381 161 AMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAA 209 (279)
T ss_pred HHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEE
Confidence 9999999999999998754443333456899999999999999999975
No 2
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1e-44 Score=296.28 Aligned_cols=214 Identities=86% Similarity=1.392 Sum_probs=186.2
Q ss_pred CCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHH
Q 027914 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (217)
Q Consensus 4 ~~~~~~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (217)
.|++++|||++|+++.+|++.|++++.+++++|++.|+|||||||++++||.+.....++.+.+......+.++.++++|
T Consensus 2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 46778999999999878999999999999999999999999999999999987543334455554444457889999999
Q ss_pred HHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcc
Q 027914 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (217)
Q Consensus 84 ~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~ 163 (217)
++++++|++|++++.++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+++|+++++|+|++||||.+|
T Consensus 82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~~f 161 (296)
T PLN02747 82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWF 161 (296)
T ss_pred HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccccc
Confidence 99999999999888889999999999999999999999999876556677789999754789999999999999999999
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
|+.++.++++|+|+|++|++|+..+++....+..+|..+.++||+||+++|++|
T Consensus 162 pe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 215 (296)
T PLN02747 162 PEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVAS 215 (296)
T ss_pred hHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999998654443333456899999999999999999975
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=3.5e-44 Score=298.73 Aligned_cols=206 Identities=30% Similarity=0.401 Sum_probs=177.3
Q ss_pred CcceEEEEEeccCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccc-hhhHHhhcCCCCCChHH
Q 027914 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTI 76 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 76 (217)
.+.||||++|+++. +|.+.|++++.+++++|+++|+|||||||++++||..... ...+...++...+++..
T Consensus 61 ~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~ 140 (363)
T cd07587 61 PRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTT 140 (363)
T ss_pred CceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHH
Confidence 45799999999862 4899999999999999999999999999999998853211 11133344433346889
Q ss_pred HHHHHHHHHcCcEEeeeeeeecC---CceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceE
Q 027914 77 LKMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKI 153 (217)
Q Consensus 77 ~~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~i 153 (217)
+.++++|++++++|++|+.++++ +++|||+++++++|++++.|+|.||+..+.|.|..+|.+|+..+.+|+++++||
T Consensus 141 ~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gri 220 (363)
T cd07587 141 KFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKI 220 (363)
T ss_pred HHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceE
Confidence 99999999999999999888763 689999999999999999999999998777889999999986578999999999
Q ss_pred EEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 154 g~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
|++||||.+||+.++.++.+|+|++++|++|+.. .+..+|..++++||+||++|||+|
T Consensus 221 G~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~------~~~~~w~~~~rarAieN~~fVv~~ 278 (363)
T cd07587 221 AVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGA------LSEPMWPIEARNAAIANSYFTVGI 278 (363)
T ss_pred EEEEecccCCcHHHHHHHHcCCcEEEECCCcCCC------CchHHHHHHHHHHHHhcCcEEEEe
Confidence 9999999999999999999999999999996521 245799999999999999999986
No 4
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.9e-43 Score=287.66 Aligned_cols=206 Identities=39% Similarity=0.637 Sum_probs=178.1
Q ss_pred CcceEEEEEeccCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHH
Q 027914 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
+++||||++|+++. ++.++|++++.+++++|+++|+|||||||++++||++......+.+.++....++..+
T Consensus 1 ~~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
T cd07568 1 SRIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTK 80 (287)
T ss_pred CceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHH
Confidence 36799999999975 7889999999999999999999999999999999975443223444444433467899
Q ss_pred HHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEE
Q 027914 78 KMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 156 (217)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~ 156 (217)
.++++|++++++|++|+.++. ++++||++++++++|++++.|+|.||++++.+.|..+|.+|+..+.+|+++++|+|++
T Consensus 81 ~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~ 160 (287)
T cd07568 81 RFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVY 160 (287)
T ss_pred HHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEE
Confidence 999999999999999988765 5789999999999999999999999998877788889999985478999999999999
Q ss_pred EecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 157 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 157 IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
||||.+||++.|.++++|+|+|++|++++. + .....|..+.++||+||++++++|
T Consensus 161 ICyD~~fpe~~r~la~~Ga~li~~ps~~~~-~-----~~~~~~~~~~~~rA~en~~~vv~~ 215 (287)
T cd07568 161 ICYDRHFPEGWRALGLNGAEIVFNPSATVA-G-----LSEYLWKLEQPAAAVANGYFVGAI 215 (287)
T ss_pred EEecccCchHHHHHHHCCCeEEEECCcCCC-C-----CchhhhHHHHHHHHHHCCcEEEEe
Confidence 999999999999999999999999999642 1 245688888999999999999864
No 5
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.5e-42 Score=281.90 Aligned_cols=209 Identities=63% Similarity=1.058 Sum_probs=180.0
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 9 ~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
||||++|+++.+|+++|++++.+.+++|.++|+|||||||++++||++.+...+..+.+++....++++.+.++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence 69999999998899999999999999999999999999999999998876544455555523345788999999999999
Q ss_pred EEeeeeeeec-CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHH
Q 027914 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (217)
Q Consensus 89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~ 167 (217)
+|++|+.++. ++++||++++++++|+++..|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||.+||+++
T Consensus 81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~ 160 (284)
T cd07573 81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAA 160 (284)
T ss_pred EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchHHH
Confidence 9999998775 468999999999999999999999998765567888899998448999999999999999999999999
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCC--CCCHHHHHHHhhhhhccccEEEEeC
Q 027914 168 RAMVLQGAEILFYPTAIGSEPQDDG--LDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 168 ~~~~~~g~dlil~~~~~~~~~~~~~--~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++++|+|+|++|+++++.+.... .....+|..+.++||+||++++|+|
T Consensus 161 r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 212 (284)
T cd07573 161 RLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAV 212 (284)
T ss_pred HHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEe
Confidence 9999999999999999643221111 1356899999999999999999975
No 6
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9e-43 Score=282.04 Aligned_cols=194 Identities=30% Similarity=0.521 Sum_probs=166.0
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcE
Q 027914 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (217)
Q Consensus 10 ~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (217)
|||++|+++..|+++|++++.+++++|+++|+|||||||++++||.... ..+... .++..+.++++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~------~~~~~~-~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA------SEAESD-TGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH------HhcccC-CCHHHHHHHHHHHHcCeE
Confidence 6999999996699999999999999999999999999999999986432 122222 357889999999999999
Q ss_pred EeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHHH
Q 027914 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (217)
Q Consensus 90 i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~~ 169 (217)
|++|++++.++++||++++++++| ++..|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||++|||++|.
T Consensus 74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~fPe~~r~ 147 (279)
T cd07579 74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALFPEAGRV 147 (279)
T ss_pred EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccCcHHHHH
Confidence 999999888889999999999999 689999999986 47778999987 899999999999999999999999999
Q ss_pred HHHcCCcEEEeccCCCC---CCCCCCC--------C--CHHHHHHHhhhhhccccEEEEeC
Q 027914 170 MVLQGAEILFYPTAIGS---EPQDDGL--------D--SRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 170 ~~~~g~dlil~~~~~~~---~~~~~~~--------~--~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++++|+|+|++|++|+. ++|+... . ...+|. ++++||+||++|||+|
T Consensus 148 ~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~a 207 (279)
T cd07579 148 LALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFA 207 (279)
T ss_pred HHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEe
Confidence 99999999999999753 1222111 1 135787 6899999999999986
No 7
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.4e-42 Score=291.93 Aligned_cols=205 Identities=28% Similarity=0.424 Sum_probs=176.6
Q ss_pred CcceEEEEEeccCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHH
Q 027914 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
.++||||++|+++. .+.+.|++++.+++++|+++|+|||||||++++||........+.+.++... ++..+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence 56899999999972 4899999999999999999999999999999988854211111333444333 57899
Q ss_pred HHHHHHHHcCcEEeeeeeeec---CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEE
Q 027914 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (217)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig 154 (217)
.++++|++++++|++|+.+++ ++++|||+++++++|+++++|+|.||++.+.|.|..+|.+|+...++|+++++|||
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG 242 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 242 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence 999999999999999988764 35799999999999999999999999988888899999999865689999999999
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++||||.+|||.+|.++.+|+|+|++|++|+.. .+..+|..++++||+||++||++|
T Consensus 243 v~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~------~~~~~w~~~~raRAiEN~~fvv~a 299 (405)
T PLN00202 243 VNICYGRHHPLNWLAFGLNGAEIVFNPSATVGD------LSEPMWPIEARNAAIANSYFVGSI 299 (405)
T ss_pred EEEccccccHHHHHHHHHCCCcEEEECCCCCCc------cCHHHHHHHHHHHHHhcCCEEEEe
Confidence 999999999999999999999999999996531 345799999999999999999986
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=2.7e-42 Score=276.27 Aligned_cols=188 Identities=18% Similarity=0.303 Sum_probs=159.4
Q ss_pred ceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc
Q 027914 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (217)
Q Consensus 8 ~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (217)
+||||++|+++ .+|++.|++++.++++++ +|+|||||||++++||...... .....++..+.++++|+++
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~-------~~~~~~~~~~~l~~~A~~~ 73 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAA-------SSLPQDDVVAWMTAKAQQT 73 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchh-------hccccchHHHHHHHHHHHc
Confidence 59999999998 589999999999999975 6999999999999999764321 1112346789999999999
Q ss_pred CcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHH
Q 027914 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (217)
Q Consensus 87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~ 166 (217)
++.|+++..++.++++|||+++++++|. +..|+|+||++. +.|..+|.+|+. +.+|+++++|+|++||||++|||+
T Consensus 74 ~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~fPe~ 149 (256)
T PRK10438 74 NALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRFPVW 149 (256)
T ss_pred CeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCCHHH
Confidence 9865544445556789999999999997 679999999753 367788999987 899999999999999999999999
Q ss_pred HHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 167 ~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.|.+ +|+|+|++|++|+. ....+|+.++++||+||++|||+|
T Consensus 150 ~r~l--~gad~i~~~s~~~~-------~~~~~~~~~~~aRA~En~~~vv~~ 191 (256)
T PRK10438 150 SRNR--NDYDLALYVANWPA-------PRSLHWQTLLTARAIENQAYVAGC 191 (256)
T ss_pred HHhh--cCCCEEEEecCCCC-------CchHHHHHHHHHHHHhcCcEEEEe
Confidence 9986 78999999999653 345689999999999999999986
No 9
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=5.1e-42 Score=280.31 Aligned_cols=200 Identities=28% Similarity=0.414 Sum_probs=171.1
Q ss_pred eEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccc-------hhh---HHhhcCCCCCChHHH
Q 027914 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-------RED---FFQRAKPYKDHPTIL 77 (217)
Q Consensus 9 ~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-------~~~---~~~~~~~~~~~~~~~ 77 (217)
||||++|+++ .+|+++|++++.+++++|+++|+|||||||++++||+.... .+. +.+.+... .+++++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV-DGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC-CCHHHH
Confidence 7899999998 68999999999999999999999999999999999976432 111 22223222 357899
Q ss_pred HHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCC-CceeEecCCceEEEE
Q 027914 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVA 156 (217)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~-~~~~~~~~~~~ig~~ 156 (217)
.|+++|++++++|++|++++.++++||++++++++|+++.+|+|+||+. .|..+|.+|+. .+++|+++++|+|++
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence 9999999999999999988878899999999999999999999999864 57778888863 368999999999999
Q ss_pred EecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 157 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 157 IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
||||++||+..+.++++|+|+++++++ ++|. ...+..+|..++++||+||++|||+|
T Consensus 156 ICyD~~fPe~~r~~a~~ga~ii~~~~~---~~~~-~~~~~~~~~~~~~arAien~~~vv~~ 212 (297)
T cd07564 156 ICWENYMPLARYALYAQGEQIHVAPWP---DFSP-YYLSREAWLAASRHYALEGRCFVLSA 212 (297)
T ss_pred EEhhcCCHHHHHHHHHCCCeEEEECCC---Cccc-ccccHHHHHHHHHHHHHhcCCEEEEc
Confidence 999999999999999999999999776 3333 22467899999999999999999986
No 10
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=8.8e-42 Score=273.11 Aligned_cols=193 Identities=32% Similarity=0.525 Sum_probs=170.3
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|+++|++++.+++++|.++|+|||||||++++||.+.+... .+.. ...+..+.++++|+++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~----~~~~-~~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYE----LADE-DGGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHh----hhcc-cCchHHHHHHHHHHHcCc
Confidence 699999999 5899999999999999999999999999999999997654321 1222 235789999999999999
Q ss_pred EEeeeee-eecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHH
Q 027914 89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (217)
Q Consensus 89 ~i~~g~~-~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~ 167 (217)
++++|+. +++++++|||+++++++|+++..|+|+||+++ +.|..+|.+|+. +.+|+++++|+|++||||.+||++.
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~ 152 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLRFPELF 152 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccccHHHH
Confidence 9999964 55678999999999999999999999999875 357778999987 8999999999999999999999999
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 168 ~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++++|+|+|++|++|+. .+..+|..+.++||+||++++++|
T Consensus 153 r~~~~~ga~ll~~ps~~~~-------~~~~~~~~~~~~rA~en~~~vv~~ 195 (253)
T cd07583 153 RKLALEGAEILFVPAEWPA-------ARIEHWRTLLRARAIENQAFVVAC 195 (253)
T ss_pred HHHHHcCCcEEEECCCCCC-------CchHHHHHHHHHHHHHhCCEEEEE
Confidence 9999999999999999653 457889999999999999999875
No 11
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.7e-42 Score=274.20 Aligned_cols=195 Identities=38% Similarity=0.616 Sum_probs=170.8
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+........+.+... ..+..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPI-DGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCC-CCcHHHHHHHHHHHcCe
Confidence 689999998 6899999999999999999999999999999999998765433333333332 24678999999999999
Q ss_pred EEeeeeeeecC--CceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHH
Q 027914 89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (217)
Q Consensus 89 ~i~~g~~~~~~--~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~ 166 (217)
+|++|++++.+ +++||++++++++|+++..|+|+||++ .|..+|.+|+. +.+|+++++|+|++||||++||++
T Consensus 80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D~~fpe~ 154 (258)
T cd07584 80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYDMGFPEV 154 (258)
T ss_pred EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcCccChHH
Confidence 99999987653 689999999999999999999999976 46678999987 899999999999999999999999
Q ss_pred HHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 167 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 167 ~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.+.++++|+|++++|++|+. ...++|....++||+||+++|++|
T Consensus 155 ~r~~~~~gadll~~ps~~~~-------~~~~~~~~~~~~rA~En~~~vv~~ 198 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWRE-------QDADIWDINLPARALENTVFVAAV 198 (258)
T ss_pred HHHHHHCCCcEEEECCccCC-------CCchHHHHHHHHHHHhCCcEEEEE
Confidence 99999999999999999653 356789999999999999999964
No 12
>PLN02504 nitrilase
Probab=100.00 E-value=1.4e-41 Score=281.83 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=170.3
Q ss_pred CcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccch---------------hhHHhhcCC
Q 027914 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR---------------EDFFQRAKP 69 (217)
Q Consensus 6 ~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~---------------~~~~~~~~~ 69 (217)
.++||||++|+++ ..|.++|++++.+++++|+++|+|||||||++++||+..... ..+...+..
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 5589999999998 579999999999999999999999999999999999753211 012233333
Q ss_pred CCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCC-CceeEec
Q 027914 70 YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQT 148 (217)
Q Consensus 70 ~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~-~~~~~~~ 148 (217)
. .++.++.|+++|++++++|++|+.++.++++||++++++++|+++..|+|.|+.. .|..+|.+|.. .+.+|++
T Consensus 102 ~-~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~ 176 (346)
T PLN02504 102 V-PGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDT 176 (346)
T ss_pred C-CCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEc
Confidence 3 2578899999999999999999998888899999999999999999999998754 47778888863 4789999
Q ss_pred CCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 149 ~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+++|||++||||.+||++.|.++.+|+|++++|++++ .++|+.++++||+||++|||+|
T Consensus 177 ~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~----------~~~w~~~~rarA~En~~~Vv~a 235 (346)
T PLN02504 177 PIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADS----------RETWQASMRHIALEGGCFVLSA 235 (346)
T ss_pred CCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCC----------chhHHHHHHHHHHccCcEEEEe
Confidence 9999999999999999999999999999999998842 3689999999999999999986
No 13
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=5.1e-42 Score=278.66 Aligned_cols=198 Identities=22% Similarity=0.279 Sum_probs=164.6
Q ss_pred eEEEEEeccC-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHH-hh-----------c-
Q 027914 9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF-QR-----------A- 67 (217)
Q Consensus 9 ~~ia~vQ~~~-~~~~-------~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~-~~-----------~- 67 (217)
+++|+||..+ ..+. ++|++++.+++++|+++|+|||||||++++||.......... .. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 4789999998 4444 899999999999999999999999999999998654321110 00 1
Q ss_pred -CCCCCChHHHHHHHHHHHcCcEEeeeeeeec-----------C-CceEEEEEEECCCCCeeeeeecccCCCCCCCcccc
Q 027914 68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF 134 (217)
Q Consensus 68 -~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-----------~-~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~ 134 (217)
....+++.++.++++|++++++|++|+.++. + +++|||+++++++|+++.+|+|+||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 1112357889999999999999999987753 2 36999999999999999999999996 3667
Q ss_pred cccCCCCCceeEecCCc-eEEEEEecCCcchHHHHHHHHc-CCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccE
Q 027914 135 YFNPGDTGFKVFQTKFA-KIGVAICWDQWFPEAARAMVLQ-GAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 212 (217)
Q Consensus 135 ~~~~g~~~~~~~~~~~~-~ig~~IC~d~~~p~~~~~~~~~-g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~ 212 (217)
+|.+|...+.+|+++++ |||++||||++|||+.|.++++ |+|+|++|++|+.. ....+|..++++||+||++
T Consensus 156 ~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~------~~~~~w~~l~~arA~eN~~ 229 (299)
T cd07567 156 FDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSE------LPFLTAVQIQQAWAYANGV 229 (299)
T ss_pred ccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCC------CCchhHHHHHHHHHHHcCc
Confidence 88899755789999976 9999999999999999999999 99999999997531 2346999999999999999
Q ss_pred EEEeC
Q 027914 213 SYTDC 217 (217)
Q Consensus 213 ~vv~~ 217 (217)
||++|
T Consensus 230 ~vi~~ 234 (299)
T cd07567 230 NLLAA 234 (299)
T ss_pred eEEEe
Confidence 99986
No 14
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.2e-41 Score=272.37 Aligned_cols=193 Identities=31% Similarity=0.495 Sum_probs=169.8
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|+++|++++.+++++|+++|+|||||||++++||.+..... +.+.. ...+..+.++++|+++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~---~~~~~-~~~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVA---RLAEP-ADGPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhh---hhhcc-cCChHHHHHHHHHHHcCC
Confidence 699999999 6899999999999999999999999999999999998754322 12222 235788999999999999
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
++++|++++.++++||++++++++|+++..|+|+||++. .|..+|.+|+. +.+|+++++|+|++||||++||++.+
T Consensus 77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~fpe~~~ 152 (254)
T cd07576 77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYDVEFPELVR 152 (254)
T ss_pred EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeecCCCCHHHH
Confidence 999999988888999999999999999999999999762 46778999987 89999999999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++++|+|+|++|++++. +| ..+|..++++||+||++++|+|
T Consensus 153 ~~~~~gadii~~p~~~~~-~~------~~~~~~~~~~rA~en~~~vv~a 194 (254)
T cd07576 153 ALALAGADLVLVPTALME-PY------GFVARTLVPARAFENQIFVAYA 194 (254)
T ss_pred HHHHCCCCEEEECCccCC-Cc------chhhhhhhHHHHHhCCCEEEEE
Confidence 999999999999998642 22 2568889999999999999975
No 15
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.6e-42 Score=278.53 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=166.8
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|+++|++++.+.+++|+++|+|||||||++++||.+.+...... ... ...+.++.+++.++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~-~~~--~~~~~~~~la~~~~~~~i 77 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPD-FLE--AAEEALEELAAATADLDI 77 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHH-HHH--HHHHHHHHHHHhcccCCc
Confidence 699999998 6899999999999999999999999999999999998654311000 000 011334445555555699
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHH-H
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA-A 167 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~-~ 167 (217)
++++|++++.++++||+++++ ++|+++..|+|+||++++.+.|..+|.+|+. ..+|+++++|+|++||||.+||+. .
T Consensus 78 ~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~fpe~~~ 155 (261)
T cd07570 78 AVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWVPDPPS 155 (261)
T ss_pred EEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCCCCchH
Confidence 999999988888999999999 6999999999999998887888899999997 789999999999999999999999 9
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 168 ~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++++|+|+|++|+++ ||.. ....+|..+.++||+||+++||+|
T Consensus 156 r~~~~~ga~ll~~ps~~---~~~~--~~~~~~~~~~~~rA~en~~~vv~~ 200 (261)
T cd07570 156 AELALAGADLILNLSAS---PFHL--GKQDYRRELVSSRSARTGLPYVYV 200 (261)
T ss_pred HHHHHcCCcEEEEeCCC---cccc--CcHHHHHHHHHHHHHHhCCcEEEE
Confidence 99999999999999994 4432 356788899999999999999975
No 16
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-41 Score=272.85 Aligned_cols=201 Identities=35% Similarity=0.565 Sum_probs=169.8
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+++++|++++.+++++|.++|+|||||||++++||...+.. +....+.....++..+.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 699999999 589999999999999999999999999999999999765432 122222222235678999999999999
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
+|++|++++.++++||++++++++| .+..|+|+||+. .|..+|.+|+..+.+++++++|+|++||||++||++.+
T Consensus 80 ~i~~G~~~~~~~~~yNs~~vi~~~g-~~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r 154 (268)
T cd07580 80 YIVAGFAERDGDRLYNSAVLVGPDG-VIGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFR 154 (268)
T ss_pred EEEeecccccCCceEEEEEEECCCC-cEEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHH
Confidence 9999998888889999999999999 589999999986 47778999986578999999999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++.+|+|+|++|++|++... .......+|..+.++||+||+++||+|
T Consensus 155 ~~~~~ga~li~~ps~~~~~~~-~~~~~~~~~~~~~~arA~en~~~vv~~ 202 (268)
T cd07580 155 LLALQGADIVCVPTNWVPMPR-PPEGGPPMANILAMAAAHSNGLFIACA 202 (268)
T ss_pred HHHHcCCCEEEEcCcccccCC-cccccCcHHHHhhHHHHhhCCcEEEEE
Confidence 999999999999999653211 111234678888999999999999975
No 17
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.1e-41 Score=268.95 Aligned_cols=199 Identities=32% Similarity=0.546 Sum_probs=172.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 11 ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
||++|+++.+|+++|++++.+++++|+++|+|||||||++++||...... +...+... .+++.+.++++|+++++.+
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~--~~~~~~~~-~~~~~~~l~~~a~~~~i~i 77 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDD--YARVAEPL-DGPFVSALARLARELGITV 77 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhh--HHhhhccC-CCHHHHHHHHHHHHcCeEE
Confidence 68999999899999999999999999999999999999999999765421 12233332 2578899999999999999
Q ss_pred eeeeeeecC-CceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCC-ceeEecCCceEEEEEecCCcchHHHH
Q 027914 91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 91 ~~g~~~~~~-~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~-~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
++|++++.+ +++||++++++++|+++..|+|.||++...+.|..+|.+|+.. +.++.++++|+|++||||.+||++.+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~ 157 (255)
T cd07581 78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELAR 157 (255)
T ss_pred EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHH
Confidence 999998865 4899999999999999999999999876556788899999862 46788889999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++++|+|+|++|++|...+ .+.++|..+.++||+||++++|.|
T Consensus 158 ~~~~~ga~lil~ps~~~~~~-----~~~~~~~~~~~~rA~en~~~vv~~ 201 (255)
T cd07581 158 ALALAGADVIVVPAAWVAGP-----GKEEHWETLLRARALENTVYVAAA 201 (255)
T ss_pred HHHHCCCcEEEECCcccCCC-----CchHHHHHHHHHHHHHhCCEEEEE
Confidence 99999999999999865322 467899999999999999999975
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=4.6e-41 Score=270.65 Aligned_cols=198 Identities=34% Similarity=0.504 Sum_probs=169.6
Q ss_pred EEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcE
Q 027914 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (217)
Q Consensus 10 ~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (217)
|||++|+++.+|+++|++++.+++++|+++|+|||||||++++||.+...... ........+..+.++++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~---~~~~~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLA---LAEEEGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhh---hhccccCChHHHHHHHHHHHCCeE
Confidence 69999999988999999999999999999999999999999999986543211 011122357889999999999999
Q ss_pred Eeee-eeeecC--CceEEEEEEECCCCCeeeeeecccCCC-----CCCCcccccccCCCCCceeEecCCceEEEEEecCC
Q 027914 90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQ 161 (217)
Q Consensus 90 i~~g-~~~~~~--~~~~Ns~~~i~~~G~~~~~y~K~~L~~-----~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~ 161 (217)
|++| ++++.+ +++||++++++++|+++..|+|+||++ ...|.|..+|.+|+. +.+|+++++|+|++||||.
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~ 156 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYDL 156 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEecc
Confidence 9887 556655 899999999999999999999999953 223677889999987 8999999999999999999
Q ss_pred cchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 162 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 162 ~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+||+.++.++++|+|+|++|++|+.. .+..+|..+.++||+||+++||+|
T Consensus 157 ~~pe~~r~~~~~gadli~~p~~~~~~------~~~~~~~~~~~~rA~e~~~~vv~~ 206 (265)
T cd07572 157 RFPELARALARQGADILTVPAAFTMT------TGPAHWELLLRARAIENQCYVVAA 206 (265)
T ss_pred CcHHHHHHHHHCCCCEEEECCCCCCC------cchHHHHHHHHHHHHhcCCEEEEE
Confidence 99999999999999999999986531 356789999999999999999975
No 19
>PLN02798 nitrilase
Probab=100.00 E-value=1.1e-40 Score=271.21 Aligned_cols=202 Identities=27% Similarity=0.469 Sum_probs=170.5
Q ss_pred CCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCc-ccCcccCccchhhHHhhcCCCCCChHHHHHHHH
Q 027914 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 4 ~~~~~~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
.|...||||++|+++.+|.++|++++.+++++|.++|+|||||||+ +++|+.... ....++.. .++..+.++++
T Consensus 6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~-~~~~~~~l~~~ 80 (286)
T PLN02798 6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPL-DGPIMQRYRSL 80 (286)
T ss_pred cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccC-CCHHHHHHHHH
Confidence 4567899999999988899999999999999999999999999998 456775432 22233322 24688999999
Q ss_pred HHHcCcEEeee-eeee--cCCceEEEEEEECCCCCeeeeeecccCCC-----CCCCcccccccCCCCCceeEecCCceEE
Q 027914 83 AKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (217)
Q Consensus 83 a~~~~i~i~~g-~~~~--~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~-----~~~~~e~~~~~~g~~~~~~~~~~~~~ig 154 (217)
|+++++.|++| ..++ +++++||++++++++|+++..|+|+||++ .+.+.|..+|.+|+. +.+++++++|+|
T Consensus 81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g 159 (286)
T PLN02798 81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLG 159 (286)
T ss_pred HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEE
Confidence 99999999887 4444 46789999999999999999999999953 223457788999986 899999999999
Q ss_pred EEEecCCcchHHHHHHH-HcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 155 VAICWDQWFPEAARAMV-LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~-~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++||||.+||+..+.++ ++|+|+|++|++|+. + .+..+|..++++||+||+++||++
T Consensus 160 ~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~-~-----~~~~~~~~~~~~rAien~~~vv~a 217 (286)
T PLN02798 160 LTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTK-P-----TGEAHWEVLLRARAIETQCYVIAA 217 (286)
T ss_pred EEEEEcccChHHHHHHHHhCCCcEEEECCcCCC-C-----CcHHHHHHHHHHHHHHhCCEEEEe
Confidence 99999999999999998 999999999998652 1 245789999999999999999974
No 20
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=1.6e-40 Score=272.21 Aligned_cols=211 Identities=27% Similarity=0.358 Sum_probs=169.3
Q ss_pred cceEEEEEeccC-CC--CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccch---hhHHhhcCCCCCChHHHHHH
Q 027914 7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR---EDFFQRAKPYKDHPTILKMQ 80 (217)
Q Consensus 7 ~~~~ia~vQ~~~-~~--~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 80 (217)
++||||++|+++ .+ +.++|++++.+.+++|+++|+|||||||++++||.+.... .+.....+....++..+.+.
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 479999999987 43 7899999999999999999999999999999998653211 11111111112356788899
Q ss_pred HHHHHcCcEEeeeeeeec-CC---ceEEEEEEECCCCCeeeeeecccCCCCCCC--------cccccccCCCCCceeEec
Q 027914 81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVFQT 148 (217)
Q Consensus 81 ~~a~~~~i~i~~g~~~~~-~~---~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~--------~e~~~~~~g~~~~~~~~~ 148 (217)
++|+++++.|++|+++.. ++ ++||++++++++|+++.+|+|+||++.+++ .|..+|.+|+..+.+|++
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~ 161 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRV 161 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEec
Confidence 999999999999998753 44 899999999999999999999999876532 366789999834889999
Q ss_pred CCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCC--CC-CCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEP--QD-DGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 149 ~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~--~~-~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+++|||++||||.+||++++.++.+|+|+|++|+|+++.. +. .......+|...+++||+||+++|+++
T Consensus 162 ~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~ 233 (302)
T cd07569 162 PGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAA 233 (302)
T ss_pred CCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEe
Confidence 9999999999999999999999999999999998853211 10 011234578788899999999999975
No 21
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=268.85 Aligned_cols=200 Identities=39% Similarity=0.593 Sum_probs=173.3
Q ss_pred ceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc
Q 027914 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (217)
Q Consensus 8 ~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (217)
.||||++|+.+ .+|.++|++++.+++++|+++|+|||||||++++||++.+ ..+.+.+......+..+.+.++++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence 58999999998 7899999999999999999999999999999999999875 23455555555678999999999977
Q ss_pred CcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHH
Q 027914 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEA 166 (217)
Q Consensus 87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~ 166 (217)
.++|++|...... ..||++++++++|+++.+|+|+||++. .+.|..++.+|+....+++++++|+|++||||++|||+
T Consensus 80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~ 157 (274)
T COG0388 80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPEL 157 (274)
T ss_pred CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHH
Confidence 7777666544333 889999999999999999999999986 56788999999973369999999999999999999998
Q ss_pred HHHH-HHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 167 ARAM-VLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 167 ~~~~-~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.+.+ +..|+|+|++|++|+.. .+.++|..++++||+||+++|++|
T Consensus 158 ~~~~~a~~Gaeii~~p~a~~~~------~~~~~w~~l~~arA~en~~~vv~~ 203 (274)
T COG0388 158 ARRLLALGGAELLLVPAAWPAE------RGLDHWEVLLRARAIENQVYVLAA 203 (274)
T ss_pred HHHHHHhcCCeEEEEcCCCCCc------ccHHHHHHHHHHHhhhcCceEEEe
Confidence 8877 77889999999997642 237999999999999999999986
No 22
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=2.7e-40 Score=269.04 Aligned_cols=194 Identities=25% Similarity=0.301 Sum_probs=163.4
Q ss_pred eEEEEEeccC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHH
Q 027914 9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (217)
Q Consensus 9 ~~ia~vQ~~~-----~~~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
++||++|+++ .+|+++|++++.+++++|++ +|+|||||||++++||..... +..+.+.... ++..+.+++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~--~~~~~a~~~~-~~~~~~l~~ 77 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW--TMDETACTVP-GPETDIFAE 77 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc--hhhhhccCCC-ChhHHHHHH
Confidence 4799999997 47999999999999999986 599999999999999975321 1233333332 578899999
Q ss_pred HHHHcCcEEeeeeeeecC---CceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecC-CceEEEEE
Q 027914 82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVAI 157 (217)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~-~~~ig~~I 157 (217)
+|+++++++++|+.++.+ +++||++++++++|+++.+|+|+||+. +..+|.+|+..+.++++. |+|+|++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence 999999999999887753 689999999999999999999999853 223478888646788885 67999999
Q ss_pred ecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 158 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 158 C~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
|||++|||++|.++++|+|+|++|++|+. ...++|..++++||+||+++||+|
T Consensus 153 CyD~~fPe~~r~la~~GAdill~ps~~~~-------~~~~~w~~~~~aRA~En~~~vv~a 205 (291)
T cd07565 153 CHDGMYPEIARECAYKGAELIIRIQGYMY-------PAKDQWIITNKANAWCNLMYTASV 205 (291)
T ss_pred EcCCCCcHHHHHHHHCCCeEEEECCcCCC-------CcchHHHHHHHHHHHhcCcEEEEe
Confidence 99999999999999999999999999652 345789999999999999999975
No 23
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-40 Score=266.31 Aligned_cols=195 Identities=31% Similarity=0.505 Sum_probs=169.0
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+..... .. ......+..+.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~---~~-~~~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALS---RE-AEVPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccc---hh-cccCCChHHHHHHHHHHHcCc
Confidence 699999999 6899999999999999999999999999999999998754321 11 112235688999999999999
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
.|++|++++.++++||++++++++|. +..|+|.||++ .|..+|.+|+. +.+|+++++|+|++||||.+||++.+
T Consensus 77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~r 150 (261)
T cd07585 77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYDNHFPENVR 150 (261)
T ss_pred EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcCCcCcHHHH
Confidence 99999998888899999999999996 68999999987 46778999987 89999999999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++++|+|+|++|++++... +....+.|..++++||+||+++++++
T Consensus 151 ~l~~~gadlil~p~~~~~~~---~~~~~~~~~~~~~~rA~e~~~~vv~~ 196 (261)
T cd07585 151 ATALLGAEILFAPHATPGTT---SPKGREWWMRWLPARAYDNGVFVAAC 196 (261)
T ss_pred HHHHCCCCEEEECCccCCCC---CcchHHHHHHHhHHHHhhcCeEEEEe
Confidence 99999999999999865321 11356788889999999999999974
No 24
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-40 Score=267.16 Aligned_cols=197 Identities=28% Similarity=0.482 Sum_probs=165.6
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|++. .+|++.|++++.+.+++|+++|+|||||||++++||.+.+.. .+.+... ..+.++.|++.++ ++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~---~~~~~~~-~~~~~~~l~~~a~--~~ 74 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLV---YEVAMHA-DDPRLQALAEASG--GI 74 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhh---hhhhccc-chHHHHHHHHHcC--CC
Confidence 699999998 689999999999999999999999999999999999876532 2222211 2344555555542 89
Q ss_pred EEeeeeeeec-CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHH
Q 027914 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (217)
Q Consensus 89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~ 167 (217)
.+++|++++. ++++||+++++ ++|+++++|+|+|||.++.|.|..+|.+|+. +.+|+++++|+|++||||.+||+..
T Consensus 75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~fp~~~ 152 (269)
T cd07586 75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAWHPSLP 152 (269)
T ss_pred EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccCCcHHH
Confidence 9999998876 48999999999 8999999999999988766778889999987 8999999999999999999999999
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCC---CCCHHHHHHHhhhhhccccEEEEeC
Q 027914 168 RAMVLQGAEILFYPTAIGSEPQDDG---LDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 168 ~~~~~~g~dlil~~~~~~~~~~~~~---~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++++|+|+|++|+++ +|... .....+|..+.++||+||+++||+|
T Consensus 153 ~~~~~~ga~lil~ps~~---~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 202 (269)
T cd07586 153 YLLALDGADVIFIPANS---PARGVGGDFDNEENWETLLKFYAMMNGVYVVFA 202 (269)
T ss_pred HHHHHCCCCEEEEeCCC---ccccCccccchhHHHHHHHHHHHHHhCCeEEEE
Confidence 99999999999999994 44321 1234689999999999999999975
No 25
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=2.1e-40 Score=267.33 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=167.2
Q ss_pred eEEEEEeccCC-C------CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHH
Q 027914 9 VVVSALQFACT-D------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (217)
Q Consensus 9 ~~ia~vQ~~~~-~------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
+|||++|+++. + |.++|++++.+++++|+++|+|||||||++++||.. ...+.++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence 48999999983 3 789999999999999999999999999999998852 12567899999
Q ss_pred HHHHcCcEEeeeeeeecC--CceEEEEEEECCCCCeeeeeecccCCCCCCC---------------cccccccCCCCCce
Q 027914 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK 144 (217)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~--~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~---------------~e~~~~~~g~~~~~ 144 (217)
+|+++++++++|+.++.+ +++||++++++++|+++.+|+|+||++..++ .|..+|.+|+. +.
T Consensus 67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~ 145 (270)
T cd07571 67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ 145 (270)
T ss_pred HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence 999999999999987765 4899999999999999999999999876543 25678999987 79
Q ss_pred eEecCC-ceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 145 VFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 145 ~~~~~~-~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+|++++ +|+|++||||.+|||.++.++++|+|+|++|++ ++|........+|..++++||+||+++||+|
T Consensus 146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~---~~~~~~~~~~~~~~~~~~arA~en~~~vv~~ 216 (270)
T cd07571 146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITN---DAWFGDSAGPYQHLAMARLRAIETGRPLVRA 216 (270)
T ss_pred ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCc---ccccCCCcchHHHHHHHHHHHHHhCCCEEEE
Confidence 999999 999999999999999999999999999999998 4444333457788899999999999999976
No 26
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.3e-40 Score=262.89 Aligned_cols=189 Identities=35% Similarity=0.579 Sum_probs=163.5
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
|||++|+++ .+|++.|++++.+++++|. +|||||||++++||..... ..+...++....++.++.++++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSK-EEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCH-HHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 689999998 5899999999999999873 9999999999999976432 2233344432245789999999999999
Q ss_pred EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168 (217)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~ 168 (217)
+|++|++++.++++||++++++++| ++.+|+|+||++ .|..+|.+|+..+.+|+++++|+|++||||.+|||+++
T Consensus 77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r 151 (259)
T cd07577 77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAAR 151 (259)
T ss_pred EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHH
Confidence 9999999888889999999999999 899999999975 57778999984479999999999999999999999999
Q ss_pred HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++++|+|+|++|++|+. ..|..++++||+||++|+|+|
T Consensus 152 ~~~~~Gadli~~ps~~~~----------~~~~~~~~~rA~en~~~vv~~ 190 (259)
T cd07577 152 TLALKGADIIAHPANLVL----------PYCPKAMPIRALENRVFTITA 190 (259)
T ss_pred HHHHcCCCEEEECCccCC----------chhhhhhhHhhhhcCceEEEE
Confidence 999999999999999642 246677899999999999975
No 27
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=1.8e-39 Score=259.56 Aligned_cols=189 Identities=22% Similarity=0.325 Sum_probs=164.3
Q ss_pred eEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcC
Q 027914 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (217)
Q Consensus 9 ~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (217)
||||++|+++ .+|++.|++++.+.+++|++ |+|||||||++++||.+... +.+... ..+..+.++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~-----~~~~~~-~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAE-----ALAEPM-NGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHH-----Hhhccc-CChHHHHHHHHHHHCC
Confidence 7999999999 58999999999999999987 99999999999999976432 122222 3578899999999999
Q ss_pred cEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHH
Q 027914 88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 167 (217)
Q Consensus 88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~ 167 (217)
+.|++|+++++++++||++++++++|.+ ..|+|+||++.+ .|..+|.+|+. ..+|+++++|+|++||||.+||++.
T Consensus 74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~pe~~ 149 (252)
T cd07575 74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRFPVWS 149 (252)
T ss_pred eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCChHHH
Confidence 9999888888888999999999999975 599999997643 57778999986 7999999999999999999999999
Q ss_pred HHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 168 ~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++. +|+|++|++|+. ....+|..+.++||+||+++||+|
T Consensus 150 r~~~~--a~lil~~s~~~~-------~~~~~~~~~~~arA~en~~~vv~~ 190 (252)
T cd07575 150 RNTND--YDLLLYVANWPA-------PRRAAWDTLLKARAIENQAYVIGV 190 (252)
T ss_pred HhhcC--CCEEEEeCCCCC-------CchHHHHHHhHHHHhhccceEEEe
Confidence 98753 999999999753 356889999999999999999975
No 28
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=4e-39 Score=257.38 Aligned_cols=194 Identities=40% Similarity=0.672 Sum_probs=170.4
Q ss_pred EEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcE
Q 027914 11 VSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (217)
Q Consensus 11 ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (217)
||++|+++ .++.++|++++.+.+++|.++|+|||||||++++||......... ..+. .......+.++++|+++++.
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~-~~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAE-ELDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhcc-cCCchHHHHHHHHHHHhCeE
Confidence 68999999 589999999999999999999999999999999999876532211 0111 12357889999999999999
Q ss_pred EeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHHH
Q 027914 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (217)
Q Consensus 90 i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~~ 169 (217)
|++|+++++++++||++++++++|.++..|+|.||++ |.|..++.+|+. ..+|+++++|+|++||+|++||+..+.
T Consensus 79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d~~~~~~~~~ 154 (253)
T cd07197 79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYDLRFPELARE 154 (253)
T ss_pred EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEecCCCcHHHHH
Confidence 9999998888899999999999999999999999987 467778999987 799999999999999999999999999
Q ss_pred HHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 170 MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 170 ~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+.++|+|+|++|+++.. ...++|..+++.||+||++++++|
T Consensus 155 ~~~~g~dli~~ps~~~~-------~~~~~~~~~~~~~A~e~~~~vv~~ 195 (253)
T cd07197 155 LALKGADIILVPAAWPT-------ARREHWELLLRARAIENGVYVVAA 195 (253)
T ss_pred HHHCCCcEEEECCcCCC-------cchHHHHHHHHHHHHHhCCeEEEe
Confidence 99999999999999543 237899999999999999999975
No 29
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4e-39 Score=258.46 Aligned_cols=193 Identities=26% Similarity=0.357 Sum_probs=161.6
Q ss_pred eEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcC
Q 027914 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (217)
Q Consensus 9 ~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (217)
+|||++|++. .+|.+.|++++.+++++|+++|+|||||||++++||+..+.. +....++.. .+++.+.++++|++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~-~~~~~~~~~-~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRA-EIAPFVEPI-PGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHH-HhhhhcccC-CCHHHHHHHHHHHHcC
Confidence 6899999999 689999999999999999999999999999999999865431 122222222 2467899999999999
Q ss_pred cEEeeeeeeec--CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchH
Q 027914 88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPE 165 (217)
Q Consensus 88 i~i~~g~~~~~--~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~ 165 (217)
+.|++|++++. ++++||++++++++| ++..|+|+||.. .|..+|.+|+..+.+|+++++|+|++||||++||+
T Consensus 79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe 153 (258)
T cd07578 79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFE 153 (258)
T ss_pred cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCchH
Confidence 99999988764 468999999999988 789999999853 46678999985578999999999999999999999
Q ss_pred HHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 166 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 166 ~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+++.++++|+|+|++|++|... . .....| ++||+||++++|+|
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~-~----~~~~~~----~~rA~en~~~vv~a 196 (258)
T cd07578 154 TARLLALGGADVICHISNWLAE-R----TPAPYW----INRAFENGCYLIES 196 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCCCC-C----CcchHH----HHhhhcCCeEEEEe
Confidence 9999999999999999996521 1 122344 48999999999975
No 30
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.6e-39 Score=261.01 Aligned_cols=198 Identities=26% Similarity=0.357 Sum_probs=162.8
Q ss_pred eEEEEEeccCC--CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCccc---Cccch--hhHHhhcCCCCCChHHHHHHH
Q 027914 9 VVVSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYF---CQAQR--EDFFQRAKPYKDHPTILKMQE 81 (217)
Q Consensus 9 ~~ia~vQ~~~~--~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~---~~~~~--~~~~~~~~~~~~~~~~~~l~~ 81 (217)
||||++|+++. +|.++|++++++++++|+++|+|||||||++++||. +.... .+....... ..++..+.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAA-LTPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHH-HHHHHHHHHHH
Confidence 79999999983 799999999999999999999999999999988753 22211 111111111 12467899999
Q ss_pred HHHHcCcEEeeee-eeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecC
Q 027914 82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWD 160 (217)
Q Consensus 82 ~a~~~~i~i~~g~-~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d 160 (217)
+|++++++|++|. +.+.++++||++++++++|.+ .+|+|.||++.+ .+..++.+|+. +.+|+++++|+|++||||
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D 155 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD 155 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence 9999999999985 566788999999999999986 999999998742 23345789987 789999999999999999
Q ss_pred CcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 161 QWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 161 ~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++||++.+.++++|+|+|++|++++.. .+..+|...+++||+||++++|+|
T Consensus 156 ~~fpe~~r~l~~~ga~ii~~ps~~~~~------~~~~~~~~~~~arA~en~~~vv~a 206 (280)
T cd07574 156 SEFPELARALAEAGADLLLVPSCTDTR------AGYWRVRIGAQARALENQCYVVQS 206 (280)
T ss_pred cccHHHHHHHHHcCCCEEEECCcCCcc------ccHHHHHHHHHHHHHhhCceEEEe
Confidence 999999999999999999999986421 345678778999999999999975
No 31
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=5.6e-39 Score=281.24 Aligned_cols=194 Identities=28% Similarity=0.391 Sum_probs=170.6
Q ss_pred eEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchh--hHHhhcCCCCCChHHHHHHHHHHH
Q 027914 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTILKMQELAKE 85 (217)
Q Consensus 9 ~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~a~~ 85 (217)
||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||++.++.. .+. ....+.+.+++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~--------~~~~~~l~~La~~ 72 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL--------AACEAALERLAAA 72 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH--------HHHHHHHHHHHHh
Confidence 7999999998 7899999999999999999999999999999999998765421 111 1234566777777
Q ss_pred --cCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcc
Q 027914 86 --LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWF 163 (217)
Q Consensus 86 --~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~ 163 (217)
+++.+++|++++.++++||++++++ +|+++..|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||+|++|
T Consensus 73 ~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~~~ 150 (540)
T PRK13981 73 TAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDIWN 150 (540)
T ss_pred cCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhhcC
Confidence 6999999998888889999999997 899999999999999888899999999987 789999999999999999999
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
|++.+.++.+|+|+|++|+++ ||.. ...++|..+.++||+||++++|+|
T Consensus 151 pe~~r~la~~Gadlil~psa~---~~~~--~~~~~~~~~~~~rA~En~~~vv~a 199 (540)
T PRK13981 151 PEPAETLAEAGAELLLVPNAS---PYHR--GKPDLREAVLRARVRETGLPLVYL 199 (540)
T ss_pred CcHHHHHHHCCCcEEEEcCCC---cccC--CcHHHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999999984 4432 356788899999999999999986
No 32
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-38 Score=258.68 Aligned_cols=201 Identities=25% Similarity=0.356 Sum_probs=163.7
Q ss_pred EEEEEeccC-C----CCHHHHHHHHHHHHHHHHh-----CCCcEEEecCcccCcccCccchhh--HHhhcCCCCCChHHH
Q 027914 10 VVSALQFAC-T----DDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRED--FFQRAKPYKDHPTIL 77 (217)
Q Consensus 10 ~ia~vQ~~~-~----~~~~~n~~~~~~~i~~a~~-----~~~dlvv~PE~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (217)
.++.+|+.. . +|++.|++++.+.+++|++ +|+|||||||++++||.+.+.... +.+.++.. .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-~~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-PGPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-CCHHHH
Confidence 467888887 2 6899999999999999987 479999999999999987654221 23445544 368899
Q ss_pred HHHHHHHHcCcEEeeeeeeecC---CceEEEEEEECCCCCeeeeeecccCCCCCC-------Ccc-cccccCC-CCCcee
Q 027914 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV 145 (217)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~-------~~e-~~~~~~g-~~~~~~ 145 (217)
.|+++|++++++|++|..++.+ +++||++++++++|++++.|+|+||+...+ +.+ ..++.+| ...+.+
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v 160 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV 160 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence 9999999999999999887653 689999999999999999999999975311 111 1234454 334688
Q ss_pred EecCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 146 ~~~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++++++|+|++||||++||+..|.++++|+|+|++|++|+. + .+..+|..++++||+||+++||+|
T Consensus 161 ~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~-~-----~~~~~~~~~~~arA~en~~~vv~a 226 (294)
T cd07582 161 ADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVP-S-----VELDPWEIANRARALENLAYVVSA 226 (294)
T ss_pred ecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCC-C-----cchhhHHHHHHHHHHhcCCEEEEe
Confidence 99999999999999999999999999999999999999652 1 145788889999999999999975
No 33
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=2.1e-38 Score=257.70 Aligned_cols=206 Identities=22% Similarity=0.274 Sum_probs=155.5
Q ss_pred EEEEEeccC-CCCHHHHHHHHHHHHHHHHh----CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHH
Q 027914 10 VVSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (217)
Q Consensus 10 ~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~----~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (217)
|||++|+++ .+|+++|++++.+++++|++ +|+|||||||++++||...... +....++....++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~-~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLE-HIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHH-HHHHHHHhcCCCHHHHHHHHHHH
Confidence 699999998 58999999999999999988 8999999999999999764321 12222332223678899999999
Q ss_pred HcCcEEeeeeeeecC---CceEEEEEEECCCCCeeeeeecccCCCCCC---Cccc-cccc------CCCCCc-eeEecCC
Q 027914 85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGF-KVFQTKF 150 (217)
Q Consensus 85 ~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~---~~e~-~~~~------~g~~~~-~~~~~~~ 150 (217)
+++++|++|++++.+ +++|||+++++++|+++++|+|+||++... +.|. .++. +|+... ..+.+.+
T Consensus 80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 999999999987754 489999999999999999999999986321 1122 1232 676532 2233458
Q ss_pred ceEEEEEecCCc---c--h----HHHHHHHHcCCcEEEeccCCCCCCCCC-C--CCC-------HHHHHHHh-hhhh-cc
Q 027914 151 AKIGVAICWDQW---F--P----EAARAMVLQGAEILFYPTAIGSEPQDD-G--LDS-------RDHWRRVM-QGHA-GA 209 (217)
Q Consensus 151 ~~ig~~IC~d~~---~--p----~~~~~~~~~g~dlil~~~~~~~~~~~~-~--~~~-------~~~~~~~~-~~rA-~e 209 (217)
+|||++||||++ | | |+.|.++.+|+|+|++|++|+. ++.. . ..+ ...|...+ ++|| +|
T Consensus 160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~-~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~a~~e 238 (295)
T cd07566 160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLH-SLSPTELTVLPQEPDTETVSYWLQRFEPLRAEPL 238 (295)
T ss_pred ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcC-CCCcccccccCCCcchhHHHHHHHhhcccccCCC
Confidence 899999999996 7 5 9999999999999999999873 2110 0 001 24455444 4555 59
Q ss_pred ccEEEEeC
Q 027914 210 NVVSYTDC 217 (217)
Q Consensus 210 n~~~vv~~ 217 (217)
|++|||+|
T Consensus 239 N~~~vv~~ 246 (295)
T cd07566 239 EGTQVVFC 246 (295)
T ss_pred CceEEEEE
Confidence 99999986
No 34
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.7e-38 Score=259.45 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=162.2
Q ss_pred CcceEEEEEeccC-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHH
Q 027914 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (217)
Q Consensus 6 ~~~~~ia~vQ~~~-----~~~~~~n~~~~~~~i~~a~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
...++||++|+++ ..|+.+|++++.+.+++|+ ..|+|||||||++++||.... .+..+.+...+ ++..+.
T Consensus 10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~-g~~~~~ 86 (345)
T PRK13286 10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIP-GEETAI 86 (345)
T ss_pred CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCC-CHHHHH
Confidence 4579999999985 3578999999999999987 458999999999999975432 12334444433 578899
Q ss_pred HHHHHHHcCcEEeeeee-ee----cCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecC-Cce
Q 027914 79 MQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAK 152 (217)
Q Consensus 79 l~~~a~~~~i~i~~g~~-~~----~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~-~~~ 152 (217)
++++|++++++++++.. ++ .++++|||+++++++|+++.+|+|.|++. +...|.||+. ..+++++ +.|
T Consensus 87 l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~k 160 (345)
T PRK13286 87 FAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLK 160 (345)
T ss_pred HHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcE
Confidence 99999999999888765 32 23569999999999999999999999753 3345789987 6788885 459
Q ss_pred EEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 153 IGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 153 ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
||++||||.+|||++|.++.+|+|+|++|++|+. ...++|..++++||+||++|||+|
T Consensus 161 iG~lIC~D~~fPE~~R~la~~GAelii~psa~~~-------~~~~~~~~~~rarA~eN~~yVv~a 218 (345)
T PRK13286 161 ISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMY-------PAKEQQVLVAKAMAWANNCYVAVA 218 (345)
T ss_pred EEEEEEecccChHHHHHHHHcCCeEEEEccccCC-------CchHHHHHHHHHHHHHCCCEEEEE
Confidence 9999999999999999999999999999998653 356799999999999999999986
No 35
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=2.1e-37 Score=255.73 Aligned_cols=197 Identities=23% Similarity=0.317 Sum_probs=163.7
Q ss_pred CcceEEEEEeccCC-----CCHHHHHHHHHHHHHHHHhC--CCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHH
Q 027914 6 RREVVVSALQFACT-----DDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~-----~~~~~n~~~~~~~i~~a~~~--~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
.++++||++|++++ +|+++|++++.+++++|++. |+|||||||++++||....+. ..+.+... .++..+.
T Consensus 11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~-~g~~~~~ 87 (333)
T PRK13287 11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTV-DGPEVDA 87 (333)
T ss_pred CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccC-CCHHHHH
Confidence 45899999999973 78999999999999999864 899999999999999765321 11222222 3578899
Q ss_pred HHHHHHHcCcEEeeeeeeec-CC-ceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecC-CceEEE
Q 027914 79 MQELAKELGVVMPVSFFEEA-NN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGV 155 (217)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~~-~~-~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~-~~~ig~ 155 (217)
++++|+++++++++|..++. ++ ++|||+++++++|+++.+|+|+||+. +...+.||+..+++++++ +.|+|+
T Consensus 88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~ 162 (333)
T PRK13287 88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV 162 (333)
T ss_pred HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence 99999999999999887664 33 39999999999999999999999742 223578898446788886 569999
Q ss_pred EEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 156 ~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+||||.+|||++|.++.+|+|+|++|++++. ...++|....++||+||++++++|
T Consensus 163 ~ICyD~~fPe~~R~~a~~GAeill~~s~~~~-------~~~~~w~~~~~arA~en~~~vv~a 217 (333)
T PRK13287 163 CICHDGMFPEMAREAAYKGANVMIRISGYST-------QVREQWILTNRSNAWQNLMYTASV 217 (333)
T ss_pred EEEecccchHHHHHHHHCCCeEEEECCccCC-------cchhHHHHHHHHHHHhCCcEEEEE
Confidence 9999999999999999999999999999653 356889989999999999999875
No 36
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=241.03 Aligned_cols=199 Identities=28% Similarity=0.435 Sum_probs=172.8
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 9 ~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
.+||++|+...+|..+|+....+++.+|+++|++++.|||.+- +-+....+-...+++ .++++.+.++++|++++|
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d---Fi~~n~~esi~Lae~-l~~k~m~~y~elar~~nI 91 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFD---FIGQNPLESIELAEP-LDGKFMEQYRELARSHNI 91 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh---hhcCCcccceecccc-cChHHHHHHHHHHHhcCe
Confidence 7899999999999999999999999999999999999999753 112112234455665 357999999999999999
Q ss_pred EEeeeee-eecC---CceEEEEEEECCCCCeeeeeecccCC-----CCCCCcccccccCCCCCceeEecCCceEEEEEec
Q 027914 89 VMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHIP-----DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICW 159 (217)
Q Consensus 89 ~i~~g~~-~~~~---~~~~Ns~~~i~~~G~~~~~y~K~~L~-----~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~ 159 (217)
++..|.. ++.+ .+++|+.+++|.+|.++..|+|.||+ +.+.+.|+.+..||.....+++++-||+|+.|||
T Consensus 92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICY 171 (295)
T KOG0807|consen 92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICY 171 (295)
T ss_pred eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeee
Confidence 9977644 4432 68999999999999999999999993 3456789999999999888899999999999999
Q ss_pred CCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 160 DQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 160 d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
|++|||++..+.+.|++++..|++++. ..+..+|+-++|+||+|++||||++
T Consensus 172 DiRFpE~sl~LR~~gA~iLtyPSAFT~------~TG~AHWEiLlRARAietQCYVvaa 223 (295)
T KOG0807|consen 172 DIRFPELSLKLRKMGAQILTYPSAFTI------KTGEAHWEILLRARAIETQCYVVAA 223 (295)
T ss_pred eccCchHHHHHHHcCCcEEeccchhhh------cccHHHHHHHHHHHHhhcceEEEeh
Confidence 999999999999999999999999764 3689999999999999999999974
No 37
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=7.9e-38 Score=264.54 Aligned_cols=194 Identities=18% Similarity=0.174 Sum_probs=165.5
Q ss_pred CcceEEEEEeccCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHH
Q 027914 6 RREVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
.+++||+++|+++++ +.++|++++.+.+++|.+ ++|||||||++++++.... ..+..+.
T Consensus 157 ~~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~ 222 (391)
T TIGR00546 157 GPTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADR 222 (391)
T ss_pred CCcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHH
Confidence 457999999999954 357899999999998876 8999999999998764321 1236788
Q ss_pred HHHHHHHcCcEEeeeeeeecCC---ceEEEEEEECCCCCeeeeeecccCCCCCCCcc----------------cccccCC
Q 027914 79 MQELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPG 139 (217)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~~~~---~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e----------------~~~~~~g 139 (217)
++++++++++.+++|..+.+++ ++|||+++++++|+++.+|+|+||.+++++.+ ..+|.+|
T Consensus 223 l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G 302 (391)
T TIGR00546 223 LKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG 302 (391)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence 9999999999999998765432 79999999999999999999999988765432 2367889
Q ss_pred CCCceeEecCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 140 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 140 ~~~~~~~~~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+. +.+++++++|+|++||||..||+..|.++++|+|++++++| ++|+.++....+|..+.++||+|||+++|.|
T Consensus 303 ~~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~sn---d~wf~~s~~~~qh~~~~~~RAiEn~~~vvra 376 (391)
T TIGR00546 303 PG-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTN---DAWFGDSSGPWQHFALARFRAIENGRPLVRA 376 (391)
T ss_pred CC-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecc---hhhcCCCCChHHHHHHHHHHHHHhCCcEEEe
Confidence 87 78999999999999999999999999999999999999999 7777665567899999999999999999875
No 38
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3.8e-37 Score=274.66 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=167.3
Q ss_pred CcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchh--hHHhhcCCCCCChHHHHHHHH
Q 027914 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 6 ~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 82 (217)
.+.||||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||++.++.. .+.+. ..+.++.|++.
T Consensus 10 ~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~-----~~~~l~~L~~~ 84 (679)
T PRK02628 10 HGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA-----VEDALATLVEA 84 (679)
T ss_pred CCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh-----hHHHHHHHHHH
Confidence 3579999999999 6899999999999999999999999999999999999877521 12111 13577889999
Q ss_pred HHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCc----------------eeE
Q 027914 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVF 146 (217)
Q Consensus 83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~----------------~~~ 146 (217)
++++++.|++|++++.++++||++++++ +|++++.|+|+|||+++.|.|.+||++|+... .+|
T Consensus 85 a~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf 163 (679)
T PRK02628 85 SADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLF 163 (679)
T ss_pred HhhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeE
Confidence 9999999999998887889999999996 89999999999999988889999999998621 246
Q ss_pred ec---CCceEEEEEecCCcchHH-HHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 147 QT---KFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 147 ~~---~~~~ig~~IC~d~~~p~~-~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
++ +++|||+.||||+|||+. .+.++.+|||+|++|++|+ +.. .....|..+.+.||.+++.++|++
T Consensus 164 ~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp---~~~--gk~~~r~~l~~~~aar~~~~~v~~ 233 (679)
T PRK02628 164 EAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASN---ITV--GKADYRRLLVASQSARCLAAYVYA 233 (679)
T ss_pred EecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCC---ccc--CcHHHHHHHHHHHHHHhCcEEEEE
Confidence 55 689999999999999997 5889999999999999954 322 233445577888888886666553
No 39
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=6.7e-37 Score=234.04 Aligned_cols=173 Identities=36% Similarity=0.574 Sum_probs=148.7
Q ss_pred EEEEEeccC---CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCccc----CccchhhHHhhcCCCCCChHHHHHHHH
Q 027914 10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYF----CQAQREDFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 10 ~ia~vQ~~~---~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
|||++|+++ ..|.++|++++.+++++|.++++|||||||++++||. +.....+....+.... .+..+.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence 799999994 5789999999999999999999999999999999983 2222333444443322 6889999999
Q ss_pred HHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCc-ccccccCCCCCceeEecC-----CceEEEE
Q 027914 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQTK-----FAKIGVA 156 (217)
Q Consensus 83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~-e~~~~~~g~~~~~~~~~~-----~~~ig~~ 156 (217)
++++++++++|+++++++++||++++++++|+++..|+|+||++++++. +..++.+|.....+++++ ++|+|++
T Consensus 80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ 159 (186)
T PF00795_consen 80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL 159 (186)
T ss_dssp HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence 9999999999999999999999999999999999999999999988888 888899985546666664 7999999
Q ss_pred EecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 157 ICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 157 IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
||||.+||++++.++++|+|+|++|+|
T Consensus 160 ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 160 ICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred EEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 999999999999999999999999986
No 40
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1e-35 Score=265.17 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=155.7
Q ss_pred ceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc
Q 027914 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (217)
Q Consensus 8 ~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (217)
.||||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||.++++.. +........+.++.+.+.++.+
T Consensus 3 ~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~---~~~~~~~~~~~L~~La~~a~~~ 79 (700)
T PLN02339 3 LLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFL---ELDTVTHSWECLAEILVGDLTD 79 (700)
T ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhh---ChhHHHHHHHHHHHHHhhcccC
Confidence 69999999999 5899999999999999999999999999999999999876521 1111100113344444444567
Q ss_pred CcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCC------------------------
Q 027914 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG------------------------ 142 (217)
Q Consensus 87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~------------------------ 142 (217)
++.+++|++...++++||+++++ .+|++++.|+|.||++++.|.|.++|+||+..
T Consensus 80 ~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg 158 (700)
T PLN02339 80 GILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFG 158 (700)
T ss_pred CeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccC
Confidence 99999999987778999999999 58999999999999999889999999998621
Q ss_pred ceeEecCCceEEEEEecCCcchHHHHH-HHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEE
Q 027914 143 FKVFQTKFAKIGVAICWDQWFPEAARA-MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSY 214 (217)
Q Consensus 143 ~~~~~~~~~~ig~~IC~d~~~p~~~~~-~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~v 214 (217)
..+|++++.+||+.||||+|||+..+. ++.+|||+|++|++ +||..++ ...+|..+...++..++.+|
T Consensus 159 ~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sa---s~~~~gK-~~~R~rai~n~sa~~~~~yv 227 (700)
T PLN02339 159 DGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSG---SHHQLRK-LNTRLDLIRSATHKCGGVYL 227 (700)
T ss_pred cceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCC---ChhhcCC-HHHHHHHHHHHHHHhCCcEE
Confidence 124456678999999999999999885 99999999999998 4553211 23445555555666667774
No 41
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=1.7e-35 Score=257.67 Aligned_cols=193 Identities=21% Similarity=0.180 Sum_probs=160.5
Q ss_pred cceEEEEEeccCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHH
Q 027914 7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (217)
Q Consensus 7 ~~~~ia~vQ~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (217)
++++||++|+++++ +.++|++++.+.++++ ++++|||||||++++++. .+ ...++.+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence 47999999999953 4678999999988844 578999999999987653 11 113466789
Q ss_pred HHHHHHcCcEEeeeeeeecC---C-ceEEEEEEECCCCCeeeeeecccCCCCCCCcc---------------cccccCCC
Q 027914 80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD 140 (217)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~---~-~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e---------------~~~~~~g~ 140 (217)
+++++++++.+++|..++++ + ++||+++++++ |+++.+|+|+||.+++++.+ ..+|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999876542 3 69999999998 77899999999988765422 12578998
Q ss_pred CCceeEecCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 141 TGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 141 ~~~~~~~~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
...++++++++|+|++||||.+|||..|.+.++|+|++++++| |+|+..+....+|..+.++||+|||+++|.|
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~sn---d~Wf~~~~~~~qh~~~~~~RAiEng~~vvra 436 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISN---DAWFGDSIGPYQHFQMARMRALELGRPLIRA 436 (505)
T ss_pred CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccc---hhhcCCCCchHHHHHHHHHHHHHhCCceEEe
Confidence 4478999999999999999999999999999999999999999 6676655567789999999999999999975
No 42
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=7.1e-34 Score=240.78 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=152.1
Q ss_pred eEEEEEeccCCCCH-------HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHH
Q 027914 9 VVVSALQFACTDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (217)
Q Consensus 9 ~~ia~vQ~~~~~~~-------~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
.+|+++|++++++. ++|++++.+.+++|.+.++|||||||++++.+... ..+..+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 49999999996543 67899999999988888999999999998754221 1235566666
Q ss_pred HHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCC----------------cccccccCCCCCcee
Q 027914 82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV 145 (217)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~----------------~e~~~~~~g~~~~~~ 145 (217)
.+ .++.+++|....+++++|||++++++ |+ +..|+|+||.+++++ .+...|++|+. +.+
T Consensus 261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~ 335 (418)
T PRK12291 261 LS--HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD 335 (418)
T ss_pred hc--cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence 64 47899999887776789999999974 76 789999999887652 34457899976 789
Q ss_pred EecCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 146 FQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 146 ~~~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+++++.|+|++||||.+||+..+ +|+|++++++| |+|++++....+|..++|+||+|||+++|.+
T Consensus 336 ~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSN---daWfg~s~~p~~~~~~~r~RAiE~g~pvvra 400 (418)
T PRK12291 336 FTLDGVKFRNAICYEATSEELYE----GNPKIVIAISN---NAWFVPSIEPTLQKLLLKYYARKYGKTIYHS 400 (418)
T ss_pred eeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecc---cccCCCChhHHHHHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999987 78999999999 8888766667899999999999999999864
No 43
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-34 Score=225.42 Aligned_cols=209 Identities=28% Similarity=0.382 Sum_probs=178.2
Q ss_pred CCcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccC-ccchhhHHhhcCCCCCChHHHHHHHH
Q 027914 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC-QAQREDFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 5 ~~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
...++++|++|+.. ..+..+|++.....+++|+++|++||||||.+++||.. ..+.+...+.-.+...++..+.+++.
T Consensus 10 ~~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~v 89 (298)
T KOG0806|consen 10 ILPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEV 89 (298)
T ss_pred cccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHH
Confidence 35589999999999 56899999999999999999999999999999999988 44332222222221246899999999
Q ss_pred HHHcCcEEeeeeeeec--CCceEEEEEEECCCCCeeeeeecccCCCC--CC---CcccccccCCCCCceeEecCCceEEE
Q 027914 83 AKELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDG--PG---YQEKFYFNPGDTGFKVFQTKFAKIGV 155 (217)
Q Consensus 83 a~~~~i~i~~g~~~~~--~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~--~~---~~e~~~~~~g~~~~~~~~~~~~~ig~ 155 (217)
++++++++++|.++.. +++.||++.+++++|+.+..|+|.||+.. +. |.|...+.+|.. +.+++++.+|||+
T Consensus 90 a~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfGi 168 (298)
T KOG0806|consen 90 AERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFGI 168 (298)
T ss_pred HhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceEE
Confidence 9999999999977554 47999999999999999999999999774 22 678888999998 8999999999999
Q ss_pred EEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 156 ~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.||||++|+|+++.+++.|||+|+.|++|... ..+....||.-+.++||..|..+|+++
T Consensus 169 ~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~---~l~~~~~hw~~~~~~~a~~n~~~v~~~ 227 (298)
T KOG0806|consen 169 FICFDIRFYDPAMILVKDGADLIVYPTAWNNE---LLSAVPLHWALLMRARANDNAANVHAP 227 (298)
T ss_pred EEEecccccchHHHHHHcCCcEEEecchHhhh---cccccchHHHHHHhCCcccceeeeecc
Confidence 99999999999999999999999999998722 112578999999999999999999864
No 44
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.96 E-value=1.9e-28 Score=205.16 Aligned_cols=187 Identities=14% Similarity=0.057 Sum_probs=145.3
Q ss_pred ceEEEEEeccCCCC-----HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHH
Q 027914 8 EVVVSALQFACTDD-----VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 8 ~~~ia~vQ~~~~~~-----~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
.-++-.+++++.++ -.++.+++.+.+++|.++|+|+|||||.++++|.+.. .+.+.+.
T Consensus 185 p~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~-----------------~~~~~~~ 247 (388)
T PRK13825 185 PAGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT-----------------ERLWRES 247 (388)
T ss_pred CCCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc-----------------cHHHHHH
Confidence 45777888887422 1244556677777788889999999999998875321 0123555
Q ss_pred HHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCC-------cccccccCCCCCceeEecCCceEEE
Q 027914 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY-------QEKFYFNPGDTGFKVFQTKFAKIGV 155 (217)
Q Consensus 83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~-------~e~~~~~~g~~~~~~~~~~~~~ig~ 155 (217)
++++++.+++|..+++++++||++++++++|. ...|+|+||.+++++ .|..++.+|....+++++++.|+|+
T Consensus 248 l~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~ 326 (388)
T PRK13825 248 LRGSDVTVIAGAAVVDPGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP 326 (388)
T ss_pred HHhCCCeEEEEeeecCCCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE
Confidence 68899999999888778889999999999886 459999999876542 2555677774324688999999999
Q ss_pred EEecCCcc--hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 156 AICWDQWF--PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 156 ~IC~d~~~--p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+||||..| |+..+ ..+|+|+|++++| +.|+.++....++..+.+.||+|+|+++|.+
T Consensus 327 lICYE~~F~~pel~~--~~~GadlLv~~SN---d~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA 385 (388)
T PRK13825 327 LICYEQLLVWPVLQS--MLHSPDVIVAVGN---GWWTKGTSIVAIQRASAEAWARLFGVPLVRA 385 (388)
T ss_pred EEeeeecCcHHHHHh--hccCCCEEEEecC---chhcCCCcHHHHHHHHHHHHHHHhCCCEEEe
Confidence 99999998 66533 3689999999999 7788776667888899999999999999853
No 45
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.7e-28 Score=211.89 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=148.4
Q ss_pred CcceEEEEEeccCCCCH----HHHHHHHHHHHHHH---H--hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHH
Q 027914 6 RREVVVSALQFACTDDV----STNLATAERLVRAA---H--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTI 76 (217)
Q Consensus 6 ~~~~~ia~vQ~~~~~~~----~~n~~~~~~~i~~a---~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (217)
.+.++|+++|.+++++. ++-.+.+...+... . .+++|+|||||.+++-.. .+ ...-.
T Consensus 225 ~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~-~~-------------~~~~~ 290 (518)
T COG0815 225 EPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL-TR-------------HPDAL 290 (518)
T ss_pred CCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch-hh-------------cchHH
Confidence 44699999999996543 22222222222222 2 378999999999987321 11 11225
Q ss_pred HHHHHHHHHcCcEEeeeeeee--cCC--ceEEEEEEECCCCCeeeeeecccCCCCCCCccc---------------cccc
Q 027914 77 LKMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEK---------------FYFN 137 (217)
Q Consensus 77 ~~l~~~a~~~~i~i~~g~~~~--~~~--~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~---------------~~~~ 137 (217)
..+.+..++.|..+++|...+ .++ .+|||+++++++|+++.+|+|+||.|+++|-+- ..|.
T Consensus 291 ~~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~ 370 (518)
T COG0815 291 ARLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFS 370 (518)
T ss_pred HHHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhcccccccc
Confidence 667888888888888884332 233 489999999999899999999999998876542 2456
Q ss_pred CCCCCceeEecCC-ceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 138 PGDTGFKVFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 138 ~g~~~~~~~~~~~-~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
+|+. ..++.+++ .|++++||||..||+..|...++|+|+|+++|| |.|++++....||..+.|+||+|+|+++|-
T Consensus 371 ~G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SN---DAWf~~s~~p~QH~~~a~~RAiE~grp~iR 446 (518)
T COG0815 371 RGPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSN---DAWFGGSWGPYQHFQQARVRAVELGRPLVR 446 (518)
T ss_pred CCCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEccc---ccccCCCcchHHHHHHHHHHHHhcCCcEEE
Confidence 6877 56666655 669999999999999999999999999999999 889988889999999999999999999985
No 46
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=182.14 Aligned_cols=197 Identities=28% Similarity=0.422 Sum_probs=168.7
Q ss_pred CCcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccc------------hhh---HHhhcC
Q 027914 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ------------RED---FFQRAK 68 (217)
Q Consensus 5 ~~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~------------~~~---~~~~~~ 68 (217)
.+...+|+++|... ..|....++++.+.+.+|+++|++||||||.++.||+-+.. +.+ ....|.
T Consensus 14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI 93 (337)
T KOG0805|consen 14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI 93 (337)
T ss_pred cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence 35578999999998 78899999999999999999999999999999999975432 112 233344
Q ss_pred CCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccc--cCCCCCceeE
Q 027914 69 PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYF--NPGDTGFKVF 146 (217)
Q Consensus 69 ~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~--~~g~~~~~~~ 146 (217)
... ++..+.|.++|++++++++.|..++++-.+|.+++.++|+|..++++||..... .|+-.+ -.|.. ++++
T Consensus 94 ev~-gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGST-iPV~ 167 (337)
T KOG0805|consen 94 EVP-GPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGST-IPVY 167 (337)
T ss_pred cCC-ChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcc-ccee
Confidence 333 578899999999999999999999999999999999999999999999997654 233222 23444 8999
Q ss_pred ecCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 147 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 147 ~~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
+++.+|||-+||.|.+.|-+...+.++|+++.+.|+. +..+.|+.-++..|.|-+|+|+++
T Consensus 168 dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~----------D~r~~w~~sM~~IAlEG~cFvlSA 228 (337)
T KOG0805|consen 168 DTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTA----------DGRKEWQSSMLHIALEGGCFVLSA 228 (337)
T ss_pred ecccchhceeeecccccHHHHHHHHhcCcEEEeccCC----------CCcHHHHHhhhheeecCceEEEEh
Confidence 9999999999999999999999999999999999999 468899999999999999999874
No 47
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.1e-24 Score=165.82 Aligned_cols=204 Identities=29% Similarity=0.426 Sum_probs=175.0
Q ss_pred cceEEEEEeccC--CC------CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcc-cCccchhhHHhhcCCCCCChHHH
Q 027914 7 REVVVSALQFAC--TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYY-FCQAQREDFFQRAKPYKDHPTIL 77 (217)
Q Consensus 7 ~~~~ia~vQ~~~--~~------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
+-++|+++|-.+ +. +...-.+++...++.|+..|+.++.|.|.+..+| +|...+-.+.+.+++...++..+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 358999999988 21 2344566677778888889999999999988765 34433444777888888899999
Q ss_pred HHHHHHHHcCcEEeeeeeeec---CCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEE
Q 027914 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (217)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig 154 (217)
.++++|+++++.|+-.+.+++ ++-++|++++++.+|.++++++|-|+|..+.|.|+.|+-.|+..-++|++..+|||
T Consensus 152 flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgria 231 (387)
T KOG0808|consen 152 FLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIA 231 (387)
T ss_pred HHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEE
Confidence 999999999999998888875 46799999999999999999999999999999999999999987899999999999
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
+-|||--.+|.-|..+..+|+++|++|++.-.. -+...|---+|--|+.|.+++.+
T Consensus 232 vnicygrhhplnwlmy~lngaeiifnpsatvga------lseplwpiearnaaianh~ft~~ 287 (387)
T KOG0808|consen 232 VNICYGRHHPLNWLMYGLNGAEIIFNPSATVGA------LSEPLWPIEARNAAIANHYFTGS 287 (387)
T ss_pred EEeeccCCCchhhhhhhccCceEEECCcccccc------ccCccCchhhhhhhhhhceEEEe
Confidence 999999999999999999999999999996421 46778888889999999999875
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.60 E-value=5.9e-16 Score=128.92 Aligned_cols=173 Identities=22% Similarity=0.268 Sum_probs=139.1
Q ss_pred CCcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHH
Q 027914 5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (217)
Q Consensus 5 ~~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (217)
|++.++||.+++|- .-|.+.|.++|.+.|++|++.||.+-+-||+-++||-|.+.+-+...... .-+.+.++.
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~H------swE~l~~l~ 74 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLH------SWEMLAELV 74 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHH------HHHHHHHHH
Confidence 56789999999998 57999999999999999999999999999999999998776322222111 224444444
Q ss_pred HH---cCcEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCC--ce--------------
Q 027914 84 KE---LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG--FK-------------- 144 (217)
Q Consensus 84 ~~---~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~--~~-------------- 144 (217)
.. .++.+.+|+|....+-.||+.+++ -+|+++.+..|+.|...+.|+|.+||+|+... ..
T Consensus 75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q 153 (706)
T KOG2303|consen 75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQ 153 (706)
T ss_pred cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCC
Confidence 42 368889999999999999999998 79999999999999999999999999998752 11
Q ss_pred --------eEecCCceEEEEEecCCcchHH-HHHHHHcCCcEEEeccCC
Q 027914 145 --------VFQTKFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 145 --------~~~~~~~~ig~~IC~d~~~p~~-~~~~~~~g~dlil~~~~~ 184 (217)
++++..--||.-||.|+|.|.. .-.++.+|++++.+.+..
T Consensus 154 ~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGS 202 (706)
T KOG2303|consen 154 ETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGS 202 (706)
T ss_pred eeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCcc
Confidence 2223344588999999998864 456778999999999873
No 49
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=85.81 E-value=6.9 Score=31.08 Aligned_cols=72 Identities=18% Similarity=0.067 Sum_probs=39.3
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecCCce-EEEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANNAH-YNSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~~~~-~Ns~~~i~~ 111 (217)
+....+|+|||+.|=.+....... .. ......++..|.+++++++.... ...++.. .=...+++|
T Consensus 150 r~l~~~gadlil~p~~~~~~~~~~--~~-----------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~p 216 (261)
T cd07585 150 RATALLGAEILFAPHATPGTTSPK--GR-----------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILDP 216 (261)
T ss_pred HHHHHCCCCEEEECCccCCCCCcc--hH-----------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEECC
Confidence 444567999999996432211000 00 12233456677788999876432 1222222 224567889
Q ss_pred CCCeeee
Q 027914 112 DGSDLGL 118 (217)
Q Consensus 112 ~G~~~~~ 118 (217)
+|+++..
T Consensus 217 ~G~v~~~ 223 (261)
T cd07585 217 YGRVLAE 223 (261)
T ss_pred CCCEEec
Confidence 9987643
No 50
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=85.14 E-value=9.2 Score=31.21 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=40.3
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeee-cCC-ceEEEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~-~~~Ns~~~i~~~G 113 (217)
...+|+|+|+.|-.+.... . ......++.-|.+++++++.....- +++ .++=...+++|+|
T Consensus 165 la~~GAdill~ps~~~~~~--~---------------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~ivdP~G 227 (291)
T cd07565 165 CAYKGAELIIRIQGYMYPA--K---------------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIVNFDG 227 (291)
T ss_pred HHHCCCeEEEECCcCCCCc--c---------------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEECCCC
Confidence 3457999999997532110 0 1233456777888999988654322 222 3344567889999
Q ss_pred Ceeee
Q 027914 114 SDLGL 118 (217)
Q Consensus 114 ~~~~~ 118 (217)
+++..
T Consensus 228 ~ila~ 232 (291)
T cd07565 228 RTLGE 232 (291)
T ss_pred CEEEe
Confidence 87643
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=83.62 E-value=11 Score=29.79 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=38.2
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCC-ceEEEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~-~~~Ns~~~i~~~G 113 (217)
...+|+|+++.|-.....+. ......++.-|.+++++++..... ..++ .++=...+++|+|
T Consensus 154 ~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p~G 216 (254)
T cd07576 154 LALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGPDG 216 (254)
T ss_pred HHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEECCCC
Confidence 34679999999864332111 012244566788899998775432 2222 2223456778999
Q ss_pred Ceee
Q 027914 114 SDLG 117 (217)
Q Consensus 114 ~~~~ 117 (217)
+++.
T Consensus 217 ~il~ 220 (254)
T cd07576 217 TVLA 220 (254)
T ss_pred CEeE
Confidence 8763
No 52
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=82.92 E-value=5.9 Score=31.54 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEe
Q 027914 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (217)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (217)
+.....+.+.+..+...++|..+++|||..-+... . -.++..-...+|.+.++.|+
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g--~-------------l~~Fk~Ga~~lA~~~~~PIv 175 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR--G-------------LLPFKTGAFHAAIAAGVPII 175 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC--C-------------CCCccHHHHHHHHHcCCCEE
Confidence 44555666667777777778899999998654211 0 13456777788888887763
No 53
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=80.40 E-value=9.5 Score=31.37 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=40.8
Q ss_pred HhC-CCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCC-CC
Q 027914 37 HGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD-GS 114 (217)
Q Consensus 37 ~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~-G~ 114 (217)
..+ |+|+++.|-.+...... ......++.-|.+++++++........ .++-...+++|. |+
T Consensus 193 a~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~N~~g~~-~~~G~S~iv~P~~G~ 255 (299)
T cd07567 193 VKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAANYNNPS-AGMTGSGIYAGRSGA 255 (299)
T ss_pred HHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEecCCCCc-CccccceEEcCCCCc
Confidence 345 99999999644321100 122345677888999999876543221 223445688899 99
Q ss_pred eeeee
Q 027914 115 DLGLY 119 (217)
Q Consensus 115 ~~~~y 119 (217)
++...
T Consensus 256 v~a~~ 260 (299)
T cd07567 256 LVYHY 260 (299)
T ss_pred EEEEe
Confidence 87653
No 54
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.21 E-value=18 Score=28.78 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeee-eeeecCCceE-EEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~~~~~-Ns~~~i~~~G 113 (217)
.+.+|+|+|+.|-.+......... . ........+..|.+++++++.. ....+++..| =...+++|+|
T Consensus 156 ~~~~ga~li~~ps~~~~~~~~~~~--------~---~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G 224 (268)
T cd07580 156 LALQGADIVCVPTNWVPMPRPPEG--------G---PPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGPDG 224 (268)
T ss_pred HHHcCCCEEEEcCcccccCCcccc--------c---CcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECCCC
Confidence 456799999999764322110000 0 0011123345577889998664 3333333333 3457888999
Q ss_pred Cee
Q 027914 114 SDL 116 (217)
Q Consensus 114 ~~~ 116 (217)
+++
T Consensus 225 ~~~ 227 (268)
T cd07580 225 WPL 227 (268)
T ss_pred Cee
Confidence 875
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.97 E-value=17 Score=28.74 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee-eeecCCceEE-EEEEEC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANNAHYN-SIAIID 110 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~~~~~~N-s~~~i~ 110 (217)
.+....+|+|+++.|-.+.. .. ........+.-|.+++++++... ....++..++ ...+++
T Consensus 155 ~r~~~~~gadll~~ps~~~~----~~-------------~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii~ 217 (258)
T cd07584 155 ARILTLKGAEVIFCPSAWRE----QD-------------ADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKILN 217 (258)
T ss_pred HHHHHHCCCcEEEECCccCC----CC-------------chHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEEC
Confidence 34445679999999953211 10 01122334566778899987532 2222222232 456788
Q ss_pred CCCCeee
Q 027914 111 ADGSDLG 117 (217)
Q Consensus 111 ~~G~~~~ 117 (217)
|+|+++.
T Consensus 218 p~G~il~ 224 (258)
T cd07584 218 PRGQVLA 224 (258)
T ss_pred CCCceee
Confidence 9998763
No 56
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=77.41 E-value=19 Score=28.56 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=39.8
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCCceE-EEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAHY-NSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~-Ns~~~i~~~G 113 (217)
.+.+|+|+++.|-.+. +..+.. ......++..|.+++++++..... ..++..| =...+++|+|
T Consensus 158 ~~~~ga~ll~~ps~~~--~~~~~~-------------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G 222 (261)
T cd07570 158 LALAGADLILNLSASP--FHLGKQ-------------DYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDG 222 (261)
T ss_pred HHHcCCcEEEEeCCCc--cccCcH-------------HHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCC
Confidence 3457999999996532 211110 012345677888999998775432 1222222 2356888999
Q ss_pred Ceeee
Q 027914 114 SDLGL 118 (217)
Q Consensus 114 ~~~~~ 118 (217)
+++..
T Consensus 223 ~vl~~ 227 (261)
T cd07570 223 ELLAE 227 (261)
T ss_pred CEEEe
Confidence 87643
No 57
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=77.04 E-value=35 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=28.8
Q ss_pred EEEEecCCcchHHHHHHHHcCCcEEEeccCCCC
Q 027914 154 GVAICWDQWFPEAARAMVLQGAEILFYPTAIGS 186 (217)
Q Consensus 154 g~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~ 186 (217)
-++...-++.+|.++.+++.|+|.|++-+-...
T Consensus 193 ~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 193 PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred eEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 678888999999999999999999998877543
No 58
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=76.93 E-value=15 Score=29.23 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=41.1
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCC-ceEEEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~-~~~Ns~~~i~~~G 113 (217)
...+|+|+|+.|-.+......... .........++..|.+++++++..... ..++ .++-...+++|+|
T Consensus 155 ~~~~ga~lil~ps~~~~~~~~~~~----------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G 224 (269)
T cd07586 155 LALDGADVIFIPANSPARGVGGDF----------DNEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDG 224 (269)
T ss_pred HHHCCCCEEEEeCCCccccCcccc----------chhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCC
Confidence 346899999999764321100000 000123355677788999998776432 2222 3333457788999
Q ss_pred Ceee
Q 027914 114 SDLG 117 (217)
Q Consensus 114 ~~~~ 117 (217)
+++.
T Consensus 225 ~il~ 228 (269)
T cd07586 225 EVVA 228 (269)
T ss_pred CEEE
Confidence 8764
No 59
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=75.76 E-value=27 Score=29.34 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCC-ceEEEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~-~~~Ns~~~i~~ 111 (217)
+..+.+|+|||+-|-.+.. .. . ......++..|.+++++++..... .+++ .++=...+++|
T Consensus 176 R~la~~GAelii~psa~~~----~~-~------------~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Ivdp 238 (345)
T PRK13286 176 RDCAMKGAELIVRCQGYMY----PA-K------------EQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAIIGF 238 (345)
T ss_pred HHHHHcCCeEEEEccccCC----Cc-h------------HHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEECC
Confidence 3345679999998853211 10 0 112344667788899998775432 2222 33345678999
Q ss_pred CCCeeee
Q 027914 112 DGSDLGL 118 (217)
Q Consensus 112 ~G~~~~~ 118 (217)
+|+++..
T Consensus 239 ~G~vla~ 245 (345)
T PRK13286 239 DGRTLGE 245 (345)
T ss_pred CCcEEEe
Confidence 9987754
No 60
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=75.30 E-value=14 Score=25.50 Aligned_cols=51 Identities=20% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEe
Q 027914 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (217)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (217)
.....+.+.++.++|-.+++|||...+.. +.. .++......+|++.++.|+
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~~~--~~~-------------~~f~~g~~~la~~~~~pvv 125 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRSRG--RDI-------------LPFKKGAFHIAIKAGVPIL 125 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCC--CCC-------------CCcchhHHHHHHHcCCCEE
Confidence 33444555566677889999999865411 110 1334667778888888765
No 61
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=73.25 E-value=22 Score=30.15 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=36.9
Q ss_pred HhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec-----------------
Q 027914 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----------------- 98 (217)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~----------------- 98 (217)
..+|+|+++.|-.+.. ... .......++.-|-+++++++..... .+
T Consensus 238 a~~GAdiil~Psa~~~--~~~--------------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~ 301 (363)
T cd07587 238 GLNGAEIVFNPSATVG--ALS--------------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKD 301 (363)
T ss_pred HHcCCcEEEECCCcCC--CCc--------------hHHHHHHHHHHHHhcCcEEEEeccccccccccccccccccccccc
Confidence 4579999999965321 100 0112244566788899998764321 11
Q ss_pred CCceEEEEEEECCCCCee
Q 027914 99 NNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 99 ~~~~~Ns~~~i~~~G~~~ 116 (217)
...++=...+++|+|+++
T Consensus 302 ~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 302 FGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred cccccceeEEECCCCCCc
Confidence 023455677888888754
No 62
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=72.37 E-value=13 Score=25.77 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
......+.+.+..++|--+++|||...+.. ... .++..-...++.+.+++|
T Consensus 76 ~~~~~~~~~~~~l~~~~~i~ifPEG~~~~~--~~~-------------~~~~~G~~~~a~~~~~~i 126 (132)
T PF01553_consen 76 KNRKALKDIKEILRKGGSIVIFPEGTRSRS--GEL-------------LPFKKGAFHIALKAKVPI 126 (132)
T ss_dssp HHHHHHHHHHHHHHC---EEE-TT-S---B----B-----------------HHHHHHHHHH----
T ss_pred ccchhHHHHHHHhhhcceeeecCCccCcCC--Ccc-------------CCccHHHHHHHHHcCCcc
Confidence 334444444445566555999999854321 000 233455666666666665
No 63
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.34 E-value=23 Score=28.47 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (217)
+..++.+.+.++.|.+-|++.|+++.... ..+....+..+.. .+.+..+.+.|+++|+.+.+=
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~---~~~~~~~~~~~~~-----~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDV---YYEEHDEETRRRF-----REGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCccc---ccCcCCHHHHHHH-----HHHHHHHHHHHHHcCCEEEEe
Confidence 45677889999999999999999975321 1111111111111 145677888999999988763
No 64
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=71.80 E-value=18 Score=28.73 Aligned_cols=69 Identities=10% Similarity=-0.051 Sum_probs=41.7
Q ss_pred ceeEecCCceEEEEEecCCcc-----------------------------hHH---HHHHHHcCCcEEEeccCCCCCCCC
Q 027914 143 FKVFQTKFAKIGVAICWDQWF-----------------------------PEA---ARAMVLQGAEILFYPTAIGSEPQD 190 (217)
Q Consensus 143 ~~~~~~~~~~ig~~IC~d~~~-----------------------------p~~---~~~~~~~g~dlil~~~~~~~~~~~ 190 (217)
+.++++++.|||++-+.+... +.+ .+.+ ++++|++++...|+. .|.
T Consensus 121 p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-r~~~D~vIv~~HwG~-e~~ 198 (250)
T PF09587_consen 121 PAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREA-RKKADVVIVSLHWGI-EYE 198 (250)
T ss_pred eEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHH-hcCCCEEEEEeccCC-CCC
Confidence 578888888888887776540 112 3333 367999999999873 332
Q ss_pred CCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 191 DGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 191 ~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
. ....++.-+--+.++.|.-+|.
T Consensus 199 ~---~p~~~q~~~a~~lidaGaDiIi 221 (250)
T PF09587_consen 199 N---YPTPEQRELARALIDAGADIII 221 (250)
T ss_pred C---CCCHHHHHHHHHHHHcCCCEEE
Confidence 2 2233333333444566766653
No 65
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=71.50 E-value=34 Score=27.55 Aligned_cols=69 Identities=19% Similarity=0.069 Sum_probs=37.4
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecC----CceEEEEEE
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEAN----NAHYNSIAI 108 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~----~~~~Ns~~~ 108 (217)
+....+|+||++.|-....++. . .......+.-|.+++++++.... .... ..++=...+
T Consensus 172 r~la~~Ga~li~~ps~~~~~~~-----~-----------~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~i 235 (287)
T cd07568 172 RALGLNGAEIVFNPSATVAGLS-----E-----------YLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYF 235 (287)
T ss_pred HHHHHCCCeEEEECCcCCCCCc-----h-----------hhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeEE
Confidence 3344679999999965422110 0 01112234556788888864321 1111 133445668
Q ss_pred ECCCCCeeee
Q 027914 109 IDADGSDLGL 118 (217)
Q Consensus 109 i~~~G~~~~~ 118 (217)
++|+|+++..
T Consensus 236 i~p~G~il~~ 245 (287)
T cd07568 236 VDPRGQFVAS 245 (287)
T ss_pred ECCCceEEEe
Confidence 8899987643
No 66
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=71.30 E-value=30 Score=26.97 Aligned_cols=66 Identities=26% Similarity=0.210 Sum_probs=41.4
Q ss_pred HHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec-CCceEEEEEEECCC
Q 027914 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAIIDAD 112 (217)
Q Consensus 35 ~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-~~~~~Ns~~~i~~~ 112 (217)
.+..+|+|+|+.|-...... .......++..|.+.+++++..... .. +..++-...+++|+
T Consensus 154 ~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~p~ 216 (253)
T cd07197 154 ELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVDPD 216 (253)
T ss_pred HHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEECCC
Confidence 34567999999998653211 0123456777888999998775432 22 22344456678899
Q ss_pred CCeee
Q 027914 113 GSDLG 117 (217)
Q Consensus 113 G~~~~ 117 (217)
|+++.
T Consensus 217 G~~~~ 221 (253)
T cd07197 217 GEVLA 221 (253)
T ss_pred Cceee
Confidence 98653
No 67
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=71.17 E-value=21 Score=28.27 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecC-CceE-EEEEE
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHY-NSIAI 108 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~-~~~~-Ns~~~ 108 (217)
..+....+|+|||+.|-.+.. ..+. ......++..|.+++++++..... .++ +..+ =...+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~--~~~~--------------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTM--TTGP--------------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCC--Ccch--------------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 344455779999999953221 1110 012233456677889998776422 222 2222 24567
Q ss_pred ECCCCCee
Q 027914 109 IDADGSDL 116 (217)
Q Consensus 109 i~~~G~~~ 116 (217)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 88999865
No 68
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=70.84 E-value=25 Score=27.86 Aligned_cols=83 Identities=12% Similarity=0.154 Sum_probs=48.5
Q ss_pred cceEEEEEeccC-CC---CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcC---CCCCChHHHHH
Q 027914 7 REVVVSALQFAC-TD---DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAK---PYKDHPTILKM 79 (217)
Q Consensus 7 ~~~~ia~vQ~~~-~~---~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l 79 (217)
+++|||.+|+.- .+ ++.+..+++.+++..+ |++..|=+.-..=. ++ .+.+. .+.+.+.++.+
T Consensus 2 ~~ikva~~~L~gC~GC~~slldl~E~L~dll~~~-----div~~~~l~D~kei-----PE-vDValVEGsV~~ee~lE~v 70 (247)
T COG1941 2 EKIKVATVWLTGCSGCHMSLLDLYEKLLDLLEDA-----DIVYCPTLVDEKEI-----PE-VDVALVEGSVCDEEELELV 70 (247)
T ss_pred cceEEEEEEeccccchHHHHHhHHHHHHHhhhhh-----cEEEeecccccccC-----Cc-ccEEEEecccCcHHHHHHH
Confidence 578999999988 44 4455556555555433 55555543222100 00 00000 01135678888
Q ss_pred HHHHHHcCcEEeeeeeeecCC
Q 027914 80 QELAKELGVVMPVSFFEEANN 100 (217)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~~ 100 (217)
.++.++.++.|.+|.-.-.+|
T Consensus 71 ~ElRekakivVA~GsCA~~Gg 91 (247)
T COG1941 71 KELREKAKIVVALGSCAVTGG 91 (247)
T ss_pred HHHHHhCcEEEEEecchhcCC
Confidence 999999999999997655444
No 69
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=70.71 E-value=14 Score=24.72 Aligned_cols=51 Identities=22% Similarity=0.101 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
.+.+.+.+.++ +.+.|..+++|||....... . ..++......++++.+..|
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~-~--------------~~~~~~g~~~la~~~~~~v 110 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPG-K--------------LLPFKKGAARLALEAGVPI 110 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCC-C--------------cCCCcccHHHHHHHcCCCE
Confidence 44555555444 45668899999998764221 0 0123455667777777444
No 70
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.09 E-value=32 Score=27.06 Aligned_cols=68 Identities=16% Similarity=0.078 Sum_probs=38.0
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDAD 112 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~ 112 (217)
......+|+|+++.|-.+.... .. .......++..|.+++++++...... ....=...+++|+
T Consensus 156 ~~~~~~~ga~lil~ps~~~~~~--~~-------------~~~~~~~~~~rA~en~~~vv~~n~~g--~~~~G~S~i~~p~ 218 (255)
T cd07581 156 ARALALAGADVIVVPAAWVAGP--GK-------------EEHWETLLRARALENTVYVAAAGQAG--PRGIGRSMVVDPL 218 (255)
T ss_pred HHHHHHCCCcEEEECCcccCCC--Cc-------------hHHHHHHHHHHHHHhCCEEEEEcCcC--CCcccceEEECCC
Confidence 3444567999999996332110 00 01223455667778899887653221 1111235677899
Q ss_pred CCeee
Q 027914 113 GSDLG 117 (217)
Q Consensus 113 G~~~~ 117 (217)
|.++.
T Consensus 219 G~i~~ 223 (255)
T cd07581 219 GVVLA 223 (255)
T ss_pred cceee
Confidence 98754
No 71
>PRK13981 NAD synthetase; Provisional
Probab=69.31 E-value=34 Score=30.60 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=41.6
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCCceE-EEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAHY-NSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~-Ns~~~i~~ 111 (217)
...+.+|+|+++.|-.+ ++..+.. ......++..|.+++++++..... ..++..| -...+++|
T Consensus 155 r~la~~Gadlil~psa~--~~~~~~~-------------~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~dp 219 (540)
T PRK13981 155 ETLAEAGAELLLVPNAS--PYHRGKP-------------DLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNA 219 (540)
T ss_pred HHHHHCCCcEEEEcCCC--cccCCcH-------------HHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEECC
Confidence 33446799999999532 2222110 012346788889999998775432 2222222 34678889
Q ss_pred CCCeeee
Q 027914 112 DGSDLGL 118 (217)
Q Consensus 112 ~G~~~~~ 118 (217)
+|+++..
T Consensus 220 ~G~il~~ 226 (540)
T PRK13981 220 DGELAAR 226 (540)
T ss_pred CCCEeee
Confidence 9987643
No 72
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.16 E-value=46 Score=27.01 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeee-cC----CceE-EEEE
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN----NAHY-NSIA 107 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~----~~~~-Ns~~ 107 (217)
+..+.+|+||++.|-...... . .......++.-|.+++++++.....- .+ +..| =...
T Consensus 183 r~la~~Gadlil~psa~~~~~--~--------------~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ 246 (294)
T cd07582 183 RGLAMNGAEVLLRSSSEVPSV--E--------------LDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGGSM 246 (294)
T ss_pred HHHHHCCCcEEEEcCCCCCCc--c--------------hhhHHHHHHHHHHhcCCEEEEecccccCcccccCceecceeE
Confidence 334467999999997543211 0 01122345667778899987643221 11 1122 2455
Q ss_pred EECCCCCeeee
Q 027914 108 IIDADGSDLGL 118 (217)
Q Consensus 108 ~i~~~G~~~~~ 118 (217)
+++|+|+++..
T Consensus 247 ivdp~G~vla~ 257 (294)
T cd07582 247 IVDYKGRVLAE 257 (294)
T ss_pred EECCCCCEEEe
Confidence 77899987643
No 73
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.99 E-value=30 Score=27.25 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecCC-ceEEEEEEE
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAII 109 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~~-~~~Ns~~~i 109 (217)
..+....+|+|+|+.|-.+.. .. . ......+..-|.+++++++.... ...++ .++=...++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~----~~--~-----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPA----AR--I-----------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCC----Cc--h-----------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 344455689999999954211 00 0 11122345667888898875432 22222 223345677
Q ss_pred CCCCCeee
Q 027914 110 DADGSDLG 117 (217)
Q Consensus 110 ~~~G~~~~ 117 (217)
+|+|+++.
T Consensus 214 ~p~G~il~ 221 (253)
T cd07583 214 DPWGEVLA 221 (253)
T ss_pred CCCchhhe
Confidence 89998753
No 74
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.92 E-value=42 Score=26.55 Aligned_cols=63 Identities=21% Similarity=0.054 Sum_probs=36.7
Q ss_pred HHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eec----CC-ceEEEEEE
Q 027914 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEA----NN-AHYNSIAI 108 (217)
Q Consensus 35 ~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~----~~-~~~Ns~~~ 108 (217)
..+.+|+|+|+.|-.....+ ....++.-|.+++++++.... ... ++ .+.=...+
T Consensus 152 ~~~~~Gadli~~ps~~~~~~--------------------~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i 211 (259)
T cd07577 152 TLALKGADIIAHPANLVLPY--------------------CPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQI 211 (259)
T ss_pred HHHHcCCCEEEECCccCCch--------------------hhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEE
Confidence 33467999999996432110 112345667788999876432 111 11 22334678
Q ss_pred ECCCCCeee
Q 027914 109 IDADGSDLG 117 (217)
Q Consensus 109 i~~~G~~~~ 117 (217)
++|+|+++.
T Consensus 212 ~~p~G~i~~ 220 (259)
T cd07577 212 TSPKGEVLA 220 (259)
T ss_pred ECCCCCEEe
Confidence 889998763
No 75
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=68.85 E-value=47 Score=26.60 Aligned_cols=77 Identities=19% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec-----CCceEEEE
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSI 106 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-----~~~~~Ns~ 106 (217)
.+....+|+|+++.|-... +....... -..........++..|.+++++++..... .. +-.++=..
T Consensus 160 ~r~~~~~gadlil~ps~~~--~~~~~~~~------~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S 231 (284)
T cd07573 160 ARLMALQGAEILFYPTAIG--SEPQEPPE------GLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSS 231 (284)
T ss_pred HHHHHHCCCCEEEecCccc--CCCCCccc------cCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeecee
Confidence 3344567999999996532 22111000 00001122344566788899998765321 11 11223346
Q ss_pred EEECCCCCeee
Q 027914 107 AIIDADGSDLG 117 (217)
Q Consensus 107 ~~i~~~G~~~~ 117 (217)
.+++|+|+++.
T Consensus 232 ~i~~p~G~i~~ 242 (284)
T cd07573 232 FIADPFGEILA 242 (284)
T ss_pred EEECCCCCeee
Confidence 68889998753
No 76
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=68.85 E-value=42 Score=26.79 Aligned_cols=74 Identities=18% Similarity=0.043 Sum_probs=40.0
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec-----CCceEEEEE
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-----NNAHYNSIA 107 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-----~~~~~Ns~~ 107 (217)
+....+|+|+|+.|-.+.... .+. ...........++..|.+++++++..... .+ +..++=...
T Consensus 160 r~~a~~ga~lil~ps~~~~~~--~~~--------~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~ 229 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEP--HDP--------DLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSF 229 (279)
T ss_pred HHHHHcCCCEEEecCccCCCC--ccc--------ccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEE
Confidence 334467999999996532211 000 00000122334455688889998765432 11 123334567
Q ss_pred EECCCCCeee
Q 027914 108 IIDADGSDLG 117 (217)
Q Consensus 108 ~i~~~G~~~~ 117 (217)
+++|+|+++.
T Consensus 230 i~~p~G~il~ 239 (279)
T TIGR03381 230 IADHTGELVA 239 (279)
T ss_pred EECCCCcEee
Confidence 8889998764
No 77
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.66 E-value=28 Score=27.76 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.++.++.+.+.++.|+.-|++.++++.... ++.. . ..+..+.. .+.++.+.+.|+++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~-~-~~~~~~~~-----~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT-P-PNVIWGRL-----AENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC-C-HHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 456788999999999999999988865422 2211 1 11111111 24678889999999998865
No 78
>PLN02747 N-carbamolyputrescine amidase
Probab=66.12 E-value=48 Score=26.90 Aligned_cols=75 Identities=17% Similarity=0.021 Sum_probs=40.7
Q ss_pred HHHHHhCCCcEEEecCcccCc-ccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee-eee------cC---Cc
Q 027914 33 VRAAHGKGANIILIQELFEGY-YFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEE------AN---NA 101 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~------~~---~~ 101 (217)
......+|+||++.|-.+.+. +..... ........++..|.+++++++... ... .+ ..
T Consensus 165 ~r~~~~~Ga~lil~ps~~~~~~~~~~~~-----------~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~ 233 (296)
T PLN02747 165 ARAMVLQGAEVLLYPTAIGSEPQDPGLD-----------SRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKIT 233 (296)
T ss_pred HHHHHHCCCCEEEEeCccCCCCcccccc-----------hHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCce
Confidence 344456799999999764321 100000 001233445677888899886643 111 11 12
Q ss_pred eEEEEEEECCCCCeeee
Q 027914 102 HYNSIAIIDADGSDLGL 118 (217)
Q Consensus 102 ~~Ns~~~i~~~G~~~~~ 118 (217)
++=...+++|+|+++..
T Consensus 234 ~~G~S~i~~p~G~vl~~ 250 (296)
T PLN02747 234 FYGGSFIAGPTGEIVAE 250 (296)
T ss_pred EeeeeEEECCCCCEeec
Confidence 23345678899987643
No 79
>PLN02504 nitrilase
Probab=65.32 E-value=39 Score=28.38 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=36.9
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee----------------ec-
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE----------------EA- 98 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~----------------~~- 98 (217)
...+|+||++.|-... . ..+...++..|.+++++++..... .+
T Consensus 198 la~~Gadii~~p~~~~-----~---------------~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~ 257 (346)
T PLN02504 198 MYAKGIEIYCAPTADS-----R---------------ETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEE 257 (346)
T ss_pred HHHCCCeEEEECCCCC-----c---------------hhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccc
Confidence 3467999999985321 0 122345667788999998764321 00
Q ss_pred ----C-CceEEEEEEECCCCCee
Q 027914 99 ----N-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 99 ----~-~~~~Ns~~~i~~~G~~~ 116 (217)
+ ..++=...+++|+|+++
T Consensus 258 ~~~~~~~~~~G~S~IvdP~G~vl 280 (346)
T PLN02504 258 DLTPDSIVCAGGSVIISPSGTVL 280 (346)
T ss_pred cccccccccCcceEEECCCCCEe
Confidence 1 12233467888999876
No 80
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=64.14 E-value=23 Score=26.09 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=23.9
Q ss_pred CCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEe
Q 027914 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (217)
Q Consensus 40 ~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (217)
+..+++|||..-+.- .++..-...+|.+.++.|+
T Consensus 95 ~~~l~IFPEGtR~~~------------------~~fk~G~~~lA~~~~~PIv 128 (163)
T cd07988 95 EFVLAIAPEGTRSKV------------------DKWKTGFYHIARGAGVPIL 128 (163)
T ss_pred CcEEEEeCCCCCCCC------------------cChhhHHHHHHHHcCCCEE
Confidence 457999999865421 2345667788888888764
No 81
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.63 E-value=47 Score=26.56 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
++.++.+.+.++.|..-|++.|++|-... .+... ..+..+.+ .+.++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~--~~~~~~~~-----~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYDV-YYEEK--SEETRQRF-----IEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCccc-ccccc--cHHHHHHH-----HHHHHHHHHHHHHhCCEEEE
Confidence 45678889999999999999999863211 11111 11111111 13467778889999998876
No 82
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=61.37 E-value=23 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 24 TNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~--~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
...+.+.+.++...+. +..+++|||..-.. ..-.....++|++.++.+.-
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~-------------------~~~~~~~~~~a~k~~~p~l~ 137 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT-------------------EEKKERSQEFAEKNGLPPLK 137 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCCC-------------------HHHHHHHHHHHHHcCCCCcc
Confidence 3455566666666554 78899999975321 11223344778887776654
No 83
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=60.07 E-value=55 Score=26.64 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCcEEeeeeeee-----------------cCCceEEEEEEECCCCCee
Q 027914 76 ILKMQELAKELGVVMPVSFFEE-----------------ANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~-----------------~~~~~~Ns~~~i~~~G~~~ 116 (217)
...++.-|.+++++++.....- .+...+=...+++|+|+++
T Consensus 195 ~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il 252 (297)
T cd07564 195 LAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVL 252 (297)
T ss_pred HHHHHHHHHhcCCEEEEcccccChhHcccccccccccccccccCCCceEEECCCCCee
Confidence 3445677889999988743211 1112333467888999875
No 84
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=59.01 E-value=23 Score=28.08 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=34.2
Q ss_pred EEEEecCCcchHHHHHHHHcCCcEEEe--ccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 154 GVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 154 g~~IC~d~~~p~~~~~~~~~g~dlil~--~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
++++|-|+ .+++.+.+.+.|+|+|+. |..|. |... -.......-...++++|++.|.+
T Consensus 34 ~V~~~ld~-t~~vi~~A~~~~~dlIItHHP~~f~--~~~~--~~~~~~~~~~~~~li~~~I~vy~ 93 (241)
T PF01784_consen 34 KVLVALDA-TPEVIEEAIEKGADLIITHHPLFFK--PLKS--LTGDDYKGKIIEKLIKNGISVYS 93 (241)
T ss_dssp EEEEESS--SHHHHHHHHHTT-SEEEESS-SSSS--TSSH--CHCHSHHHHHHHHHHHTT-EEEE
T ss_pred EEEEEEeC-CHHHHHHHHHcCCCEEEEcCchhhc--CCcc--ccccchhhHHHHHHHHCCCEEEE
Confidence 77899998 677777888899999996 55442 1110 01122234445677788888865
No 85
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=58.41 E-value=72 Score=25.46 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=41.6
Q ss_pred hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-C--CceEEEEEEECCCCC
Q 027914 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-N--NAHYNSIAIIDADGS 114 (217)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~--~~~~Ns~~~i~~~G~ 114 (217)
.+|+++++.|-.+...... ......++.-|-+++++++....... + ..++-..++++|+|+
T Consensus 164 ~~Gaeii~~p~a~~~~~~~----------------~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~ 227 (274)
T COG0388 164 LGGAELLLVPAAWPAERGL----------------DHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGE 227 (274)
T ss_pred hcCCeEEEEcCCCCCcccH----------------HHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCcc
Confidence 4589999999976543210 11223366677788999887643322 2 356667789999998
Q ss_pred eee
Q 027914 115 DLG 117 (217)
Q Consensus 115 ~~~ 117 (217)
++.
T Consensus 228 v~~ 230 (274)
T COG0388 228 VLA 230 (274)
T ss_pred EEe
Confidence 653
No 86
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=57.75 E-value=80 Score=24.93 Aligned_cols=65 Identities=20% Similarity=0.061 Sum_probs=36.2
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecCC-ceEEEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANN-AHYNSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~~-~~~Ns~~~i~~ 111 (217)
+....+|+|+++.|-.+..+.. . ......-|.+++++++.... ...++ .++=...+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~~~~~------------------~-~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~p 216 (258)
T cd07578 156 RLLALGGADVICHISNWLAERT------------------P-APYWINRAFENGCYLIESNRWGLERGVQFSGGSCIIEP 216 (258)
T ss_pred HHHHHcCCCEEEEcCCCCCCCC------------------c-chHHHHhhhcCCeEEEEecceeccCCcceeeEEEEECC
Confidence 3344679999999965321110 0 01123456678888876543 22222 22334578889
Q ss_pred CCCeee
Q 027914 112 DGSDLG 117 (217)
Q Consensus 112 ~G~~~~ 117 (217)
+|+++.
T Consensus 217 ~G~il~ 222 (258)
T cd07578 217 DGTIQA 222 (258)
T ss_pred CCcEee
Confidence 998763
No 87
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=57.73 E-value=54 Score=26.05 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=37.2
Q ss_pred CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecC-C-ceEEEEEEECCCCCe
Q 027914 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-N-AHYNSIAIIDADGSD 115 (217)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~-~-~~~Ns~~~i~~~G~~ 115 (217)
+|+|+++.|-.+.... . ......++.-|.+++++++..... ..+ + .++=...+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~--~---------------~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR--S---------------LHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc--h---------------HHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 5799999987542110 0 112234566788899998775432 221 1 222346788899987
Q ss_pred eee
Q 027914 116 LGL 118 (217)
Q Consensus 116 ~~~ 118 (217)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 644
No 88
>PLN00202 beta-ureidopropionase
Probab=57.46 E-value=70 Score=27.62 Aligned_cols=64 Identities=16% Similarity=0.014 Sum_probs=37.1
Q ss_pred HhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec----------C------
Q 027914 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA----------N------ 99 (217)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~----------~------ 99 (217)
..+|+|+|+.|-.+... .. . ..+...++.-|.+++++++..... .+ +
T Consensus 259 a~~GAdiIl~Psa~~~~--~~---~-----------~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~ 322 (405)
T PLN00202 259 GLNGAEIVFNPSATVGD--LS---E-----------PMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKD 322 (405)
T ss_pred HHCCCcEEEECCCCCCc--cC---H-----------HHHHHHHHHHHHhcCCEEEEeccccccccccccccccccccccc
Confidence 35799999999653211 00 0 112344566777889998765321 11 1
Q ss_pred -CceEEEEEEECCCCCee
Q 027914 100 -NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 100 -~~~~Ns~~~i~~~G~~~ 116 (217)
..++=...+++|+|+++
T Consensus 323 ~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 323 FGHFYGSSHFSAPDASCT 340 (405)
T ss_pred cccccceeEEEcCCCCEe
Confidence 12444567788888864
No 89
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=57.30 E-value=21 Score=28.69 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEE
Q 027914 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAII 109 (217)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i 109 (217)
-++++|..+++||+++=|-+.. - ++.....+.+.|.++.++ +++|+.-..+-. --.+.+..+++
T Consensus 148 V~lARAL~~~p~lllLDEP~~g-v-------------D~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTG-V-------------DVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred HHHHHHhccCCCEEEecCCccc-C-------------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE
Confidence 4566677889999999994321 1 111124577888999888 888876554332 23556666777
Q ss_pred C
Q 027914 110 D 110 (217)
Q Consensus 110 ~ 110 (217)
+
T Consensus 213 n 213 (254)
T COG1121 213 N 213 (254)
T ss_pred c
Confidence 4
No 90
>PLN02798 nitrilase
Probab=57.29 E-value=71 Score=25.80 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=37.0
Q ss_pred hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ec--CCceEEEEEEECCCCC
Q 027914 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA--NNAHYNSIAIIDADGS 114 (217)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~--~~~~~Ns~~~i~~~G~ 114 (217)
.+|+|+|+.|-.+.... +. ......++.-|-+++++++..... .. +...+=...+++|+|+
T Consensus 178 ~~Gadlil~ps~~~~~~--~~--------------~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~ 241 (286)
T PLN02798 178 EHGAQVLLVPSAFTKPT--GE--------------AHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGT 241 (286)
T ss_pred hCCCcEEEECCcCCCCC--cH--------------HHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCcc
Confidence 68999999997432110 00 012233566777889988764322 11 1223345677889998
Q ss_pred eee
Q 027914 115 DLG 117 (217)
Q Consensus 115 ~~~ 117 (217)
++.
T Consensus 242 il~ 244 (286)
T PLN02798 242 VVA 244 (286)
T ss_pred chh
Confidence 763
No 91
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=57.15 E-value=20 Score=28.80 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEE
Q 027914 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSI 106 (217)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~ 106 (217)
+-+-.+..|..++++++++=|-.. .-+ +.. .-+.++.+++++++.+++++.-..+.. --++-...
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs----~LD----i~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTS----HLD----IAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcc----ccC----HHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 334466677888999999999321 111 111 135789999999999998887765432 22444455
Q ss_pred EEECCCCCee
Q 027914 107 AIIDADGSDL 116 (217)
Q Consensus 107 ~~i~~~G~~~ 116 (217)
+++ .+|+++
T Consensus 210 i~l-k~G~i~ 218 (258)
T COG1120 210 ILL-KDGKIV 218 (258)
T ss_pred EEE-ECCeEE
Confidence 666 577653
No 92
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=56.63 E-value=67 Score=23.89 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee
Q 027914 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (217)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (217)
.++..+.++..++.|.|-||+.-....+...... +....-......+.++.+.+.|.+.|+.|.+|...
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps--~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS--KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc--cccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4555666666677899999999877665432211 11000011123568899999999999999999753
No 93
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=56.59 E-value=59 Score=22.32 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc-CcEEeeee
Q 027914 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSF 94 (217)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~g~ 94 (217)
+++...+++.++.++|.|.|.=....+.... .-+..+.+.+..++. ++.|+.|.
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~--------------~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPHG--------------PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCCC--------------CCCCHHHHHHHHHHHhCCCEeeec
Confidence 3455566666688999999988765533111 123456666666655 88888774
No 94
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=56.16 E-value=44 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecCcccCcccC--ccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEe
Q 027914 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFC--QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (217)
.+.+.+.+..+ +.++|-.++||||...+.... +.. ...++..-...+|.+.++.|+
T Consensus 83 ~~~~~~~~~~~-~L~~G~~l~IFPEGtrs~~~~~~g~~-----------~~~~fk~G~~~lA~~~~~pIv 140 (210)
T cd07986 83 KNRESLREALR-HLKNGGALIIFPAGRVSTASPPFGRV-----------SDRPWNPFVARLARKAKAPVV 140 (210)
T ss_pred hhHHHHHHHHH-HHhCCCEEEEECCcccccccccCCcc-----------ccCCccHHHHHHHHHHCCCEE
Confidence 34444444333 445678999999986553211 000 012345677788888888774
No 95
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.01 E-value=71 Score=25.57 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+..++.+++.++.|++-|++.|+++-.. .++ +....+..+.. .+.++.+.+.|+++|+.+.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~--~~~~~~~~~~~-----~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYD-VYY--EQANNETRRRF-----IDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcc-ccc--cccHHHHHHHH-----HHHHHHHHHHHHHhCCEEEE
Confidence 35567888999999999999999986211 011 10011111111 13467788888999998866
No 96
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.76 E-value=27 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHcCcEEeee
Q 027914 73 HPTILKMQELAKELGVVMPVS 93 (217)
Q Consensus 73 ~~~~~~l~~~a~~~~i~i~~g 93 (217)
+.....+.+.|+++++.+++.
T Consensus 61 H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEE
Confidence 678899999999999998765
No 97
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=54.91 E-value=70 Score=25.82 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=39.6
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHh-hcCCCCC-ChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQ-RAKPYKD-HPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (217)
+....+|+|||+.|-.+...+........... .-..... ....+.++.-|.+++++++..........++=...+++|
T Consensus 146 r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~P 225 (279)
T cd07579 146 RVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDPARGYTGWSGVFGP 225 (279)
T ss_pred HHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCCccccccccEEECC
Confidence 33446799999999865321110000000000 0000000 012234666777899998776433211222223457889
Q ss_pred CCCee
Q 027914 112 DGSDL 116 (217)
Q Consensus 112 ~G~~~ 116 (217)
+|.++
T Consensus 226 ~G~v~ 230 (279)
T cd07579 226 DTFAF 230 (279)
T ss_pred CeEEc
Confidence 99764
No 98
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=54.60 E-value=54 Score=26.12 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=34.9
Q ss_pred EEEEecCCcchHHHHHHHHcCCcEEEe--ccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 154 GVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 154 g~~IC~d~~~p~~~~~~~~~g~dlil~--~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
++++|-|. .+++.+.+...|+|+|+. |.-| .|...-..+. ...- ...+++|++.|.+
T Consensus 38 ~I~~alD~-t~~vi~~Ai~~~~dlIitHHP~~f--~~~~~~~~~~--~~~~-~~~li~~~I~vy~ 96 (249)
T TIGR00486 38 KVVVAVDA-SESVADEAVRLGADLIITHHPLIW--KPLKRLIRGI--KPGR-LKILLQNDISLYS 96 (249)
T ss_pred EEEEEecC-CHHHHHHHHHCCCCEEEEcCcccc--CCcccccCCC--HHHH-HHHHHHCCCeEEE
Confidence 57889998 567777888899999996 4443 2321111111 1111 3457788888765
No 99
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=54.20 E-value=33 Score=28.77 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=45.0
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA 111 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~ 111 (217)
+.+|.+.++|+++.-|.+- ..+|....+.-+.|.++-++.+-+|++=..+-+ --++-+.+.+. .
T Consensus 175 LARAla~~~~IlLMDEaFS--------------ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim-k 239 (386)
T COG4175 175 LARALANDPDILLMDEAFS--------------ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM-K 239 (386)
T ss_pred HHHHHccCCCEEEecCchh--------------hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe-c
Confidence 3446677999999999432 112222345667778888888777766444333 34677777788 6
Q ss_pred CCCeee
Q 027914 112 DGSDLG 117 (217)
Q Consensus 112 ~G~~~~ 117 (217)
+|+++.
T Consensus 240 dG~ivQ 245 (386)
T COG4175 240 DGEIVQ 245 (386)
T ss_pred CCeEEE
Confidence 998763
No 100
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.15 E-value=82 Score=24.92 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccc-hhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+...+.+.+.++.|.+-|+..|+.+= |..+.+. ..+..... .+.+..+.+.+++.++.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL-----VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 455677788999999999999887642 2222211 11111111 13457778888889988766
No 101
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=53.53 E-value=63 Score=24.70 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccC
Q 027914 27 ATAERLVRAAHGKGANIILIQELFEG 52 (217)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (217)
+.+.+.+.++.++|-.+++|||..-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34455666777789999999998654
No 102
>PRK13287 amiF formamidase; Provisional
Probab=53.31 E-value=1.3e+02 Score=25.08 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=36.3
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCC--ceEEEEEEECC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANN--AHYNSIAIIDA 111 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~--~~~Ns~~~i~~ 111 (217)
+..+.+|+|+++-|-.+.. ... ....-..+.-|-+++++++.....-.++ .++=...+++|
T Consensus 175 R~~a~~GAeill~~s~~~~--~~~---------------~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~Iidp 237 (333)
T PRK13287 175 REAAYKGANVMIRISGYST--QVR---------------EQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQVCNF 237 (333)
T ss_pred HHHHHCCCeEEEECCccCC--cch---------------hHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEEECC
Confidence 3344579999998853221 100 0111223344667888876643322222 22234568899
Q ss_pred CCCeeee
Q 027914 112 DGSDLGL 118 (217)
Q Consensus 112 ~G~~~~~ 118 (217)
+|+++..
T Consensus 238 ~G~vl~~ 244 (333)
T PRK13287 238 DGTTLVQ 244 (333)
T ss_pred CCcEEEe
Confidence 9987754
No 103
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=52.74 E-value=22 Score=29.59 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEE
Q 027914 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAII 109 (217)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i 109 (217)
=.|.+|...++++++.=|.. |...| ..-..+++.|.++-++.+++|+.=..+-+ -.++.|.+.++
T Consensus 150 VaIARALa~~P~iLL~DEaT-SALDP-------------~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm 215 (339)
T COG1135 150 VAIARALANNPKILLCDEAT-SALDP-------------ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL 215 (339)
T ss_pred HHHHHHHhcCCCEEEecCcc-ccCCh-------------HHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe
Confidence 35667778899999999942 11111 11245788899999999999876544322 24678888888
Q ss_pred CCCCCeeee
Q 027914 110 DADGSDLGL 118 (217)
Q Consensus 110 ~~~G~~~~~ 118 (217)
+ +|+++-.
T Consensus 216 ~-~G~lvE~ 223 (339)
T COG1135 216 D-QGRLVEE 223 (339)
T ss_pred e-CCEEEEe
Confidence 4 8876543
No 104
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=52.54 E-value=48 Score=27.92 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=39.0
Q ss_pred CceEEEEEecCCcchH--------HHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHH-HHhhhhhccccEEEEe
Q 027914 150 FAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWR-RVMQGHAGANVVSYTD 216 (217)
Q Consensus 150 ~~~ig~~IC~d~~~p~--------~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~-~~~~~rA~en~~~vv~ 216 (217)
+--++.+||.|..|.+ +...+.+.++|++++--++.. .++..-- .++++-.-+.++++|.
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFna-------grYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNA-------GRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCC-------chHHHHHHHHHHHHHHhhCCCEEE
Confidence 4457999999999854 333355778999998666542 2333222 4444555678888775
No 105
>PRK12677 xylose isomerase; Provisional
Probab=52.16 E-value=1.5e+02 Score=25.44 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhCCCc-EEEecC
Q 027914 23 STNLATAERLVRAAHGKGAN-IILIQE 48 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~d-lvv~PE 48 (217)
+..++.+++.|+.|.+-|++ +++||-
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 44578889999999999998 555554
No 106
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=51.90 E-value=97 Score=23.05 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCcEEeeeeeeecCC--ce--EEEEEEECCCCCeeeeee
Q 027914 76 ILKMQELAKELGVVMPVSFFEEANN--AH--YNSIAIIDADGSDLGLYR 120 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~--~~--~Ns~~~i~~~G~~~~~y~ 120 (217)
.+.+.++++.+++...-....+.++ .+ -+..++++|+|++...|+
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4667888888776543332212221 11 235679999999887774
No 107
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=51.86 E-value=24 Score=28.83 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCC
Q 027914 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADG 113 (217)
Q Consensus 35 ~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G 113 (217)
.|.-.+++|+++=|-. +|..+. ....+.+.+++++++.+.+|+++....+ -....+.++++ .+|
T Consensus 149 ~aL~~~P~lliLDEPt-~GLDp~-------------~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~~G 213 (293)
T COG1131 149 LALLHDPELLILDEPT-SGLDPE-------------SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-NDG 213 (293)
T ss_pred HHHhcCCCEEEECCCC-cCCCHH-------------HHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-eCC
Confidence 3445688999999932 122211 1246778999999998877777654332 23446677777 588
Q ss_pred Ceeee
Q 027914 114 SDLGL 118 (217)
Q Consensus 114 ~~~~~ 118 (217)
.++..
T Consensus 214 ~~~~~ 218 (293)
T COG1131 214 KIIAE 218 (293)
T ss_pred EEEEe
Confidence 77654
No 108
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=51.54 E-value=53 Score=19.88 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
...++++.|+++|.+.+.+-+.... .....+.+.+++.++.++.|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~---------------------~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNL---------------------FGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcc---------------------cCHHHHHHHHHHcCCeEEEEE
Confidence 4668888999999999999886521 012345667777899988886
No 109
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.09 E-value=30 Score=27.60 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEEC
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~ 110 (217)
.|.+|.-+++++++-=|-.- ..++.......+.|++++++.|+++++....-+ -.+|...++-+
T Consensus 157 aIARaL~Q~pkiILADEPva--------------sLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl- 221 (258)
T COG3638 157 AIARALVQQPKIILADEPVA--------------SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL- 221 (258)
T ss_pred HHHHHHhcCCCEEecCCccc--------------ccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe-
Confidence 45666678999999888322 223333456789999999999999999865433 23455555556
Q ss_pred CCCCee
Q 027914 111 ADGSDL 116 (217)
Q Consensus 111 ~~G~~~ 116 (217)
.+|+++
T Consensus 222 ~~G~iv 227 (258)
T COG3638 222 KAGRIV 227 (258)
T ss_pred cCCcEE
Confidence 577654
No 110
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.98 E-value=78 Score=23.58 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+..++.+.+.++.|+.-|++.++++=.... ........+..+.+ .+.++.+.+.++++++.+.+
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYP-SGPEDDTEENWERL-----AENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTES-SSTTSSHHHHHHHH-----HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccc-cccCCCHHHHHHHH-----HHHHHHHHhhhhhhcceEEE
Confidence 344888888999998899999999843110 11111111111211 24567888888888988654
No 111
>PTZ00261 acyltransferase; Provisional
Probab=50.82 E-value=60 Score=27.47 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
..+.+.+.+++..++|-.|++|||..-+.-. +.+ .++..-.-.+|.+.++.|
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~g-g~L-------------~pFK~GaF~LAieagvPI 251 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAINKHP-QVL-------------QTFRYGTFATIIKHRMEV 251 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCCcCCC-CcC-------------CCCcHHHHHHHHHcCCCE
Confidence 3444555555566778899999998653110 000 244566667788888776
No 112
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=50.68 E-value=67 Score=25.72 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+..++.+.+.++.|.+-|++.+++.-....+ ....+..... -+.+..+.+.|+++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~~-----~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKRV-----IEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHHH-----HHHHHHHHHhccCCCCEEEE
Confidence 56678889999999999999998874432211 1111111111 13456666666778888766
No 113
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=49.81 E-value=86 Score=23.46 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
.++-.+.+...++.+.+.++.+|++--.....+.... .... .-..+.+.++++|+++++.+
T Consensus 89 ~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~-------~~~~-~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 89 YTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGG-------KVED-TLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCC-------cccc-cchhHHHHHHHHHHHhCCCE
Confidence 4445555556666666778888886311111111100 0000 11467899999999999775
No 114
>PRK10799 metal-binding protein; Provisional
Probab=49.23 E-value=57 Score=25.93 Aligned_cols=57 Identities=9% Similarity=-0.112 Sum_probs=34.8
Q ss_pred EEEEecCCcchHHHHHHHHcCCcEEEe--ccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 154 GVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 154 g~~IC~d~~~p~~~~~~~~~g~dlil~--~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
++++|-|. .+++.+.+...|+|+|+. |..|. |-. ........-...+++++++.|.+
T Consensus 37 ~I~~alD~-t~~vi~~A~~~~~dlIitHHP~~~~--~~~---~~~~~~~~~~~~~li~~~i~vy~ 95 (247)
T PRK10799 37 KIVTGVTA-SQALLDEAVRLQADAVIVHHGYFWK--GES---PVIRGMKRNRLKTLLANDINLYG 95 (247)
T ss_pred EEEEEeCC-CHHHHHHHHHCCCCEEEECCchhcc--CCC---ccccchHHHHHHHHHHCCCeEEE
Confidence 77889998 567778888899999996 43332 110 00111112223467788887765
No 115
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=48.66 E-value=30 Score=27.81 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchh-------hHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE-------DFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+-+.+-++++.+.+++..+ ...+-+.|=+ ++=-+..+... +|.....-. --+.+.+.+.|+++.++-..
T Consensus 153 DICPdELeKm~~~Vd~i~~-~~~~~~~PlF-IsvDPeRD~~~~~~eY~~eF~pkllGL--TGT~eqvk~vak~yRVYfs~ 228 (280)
T KOG2792|consen 153 DICPDELEKMSAVVDEIEA-KPGLPPVPLF-ISVDPERDSVEVVAEYVSEFHPKLLGL--TGTTEQVKQVAKKYRVYFST 228 (280)
T ss_pred CcChHHHHHHHHHHHHHhc-cCCCCccceE-EEeCcccCCHHHHHHHHHhcChhhhcc--cCCHHHHHHHHHHhEEeecc
Confidence 3457788888888888644 3333322433 32122222211 111111111 12468899999999999666
Q ss_pred eeeeecCC-ce--EEEEEEECCCCCeeeeeecc
Q 027914 93 SFFEEANN-AH--YNSIAIIDADGSDLGLYRKS 122 (217)
Q Consensus 93 g~~~~~~~-~~--~Ns~~~i~~~G~~~~~y~K~ 122 (217)
|-.+.+.+ -. -.-++++||+|+++..|.+-
T Consensus 229 gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 229 GPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred CCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 54332222 12 22357899999988777654
No 116
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.64 E-value=49 Score=25.44 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECC-CCCeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDA-DGSDLGL 118 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~-~G~~~~~ 118 (217)
.+.+.+.++.++.+..|++...... -..+.+..++++. +|+++..
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 4456677776665666655543332 1244556677754 6876543
No 117
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=46.90 E-value=85 Score=24.17 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
...+.+.+.++ +.++|-.+++|||..-+. .+. -.++......+|++.++.|+-
T Consensus 107 ~~~~~~~~~~~-~l~~g~~v~IfPEGtr~~--~~~-------------~~~f~~G~~~lA~~~~~pIvP 159 (214)
T PLN02901 107 SQLECLKRCME-LLKKGASVFFFPEGTRSK--DGK-------------LAAFKKGAFSVAAKTGVPVVP 159 (214)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCCCCCC--CCc-------------ccCchhhHHHHHHHcCCCEEE
Confidence 33444444444 345688999999985321 111 023445566788888888654
No 118
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=46.82 E-value=40 Score=26.22 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y 119 (217)
...+.+.+++++.+..+++.....+.-...+..+++ .+|+++..+
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l-~~G~i~~~~ 227 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM-RDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE-ECCEEEEEe
Confidence 345666766665566665544332211112345566 478765443
No 119
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=46.12 E-value=23 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.1
Q ss_pred ecCCceEEEEEEECCCCCeeeeeecccCCC
Q 027914 97 EANNAHYNSIAIIDADGSDLGLYRKSHIPD 126 (217)
Q Consensus 97 ~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~ 126 (217)
.++...||+..++|-+|..+.+|+|.++..
T Consensus 122 g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 122 GDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cchhheeeeeEEeccCCccceeeeeeeccC
Confidence 345579999999999999999999999865
No 120
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=45.00 E-value=1.2e+02 Score=24.21 Aligned_cols=65 Identities=20% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G 113 (217)
+....+|+|+++.|-..-. +..... ........+..|.++++.++.... .| ...+++|+|
T Consensus 170 r~~~~~ga~iil~ps~~~~-~~~~~~------------~~~~~~~~~arA~en~~~vv~~n~---~G----~S~ivdp~G 229 (270)
T cd07571 170 RDAVRQGADLLVNITNDAW-FGDSAG------------PYQHLAMARLRAIETGRPLVRAAN---TG----ISAVIDPDG 229 (270)
T ss_pred HhhcccCCCEEEEcCcccc-cCCCcc------------hHHHHHHHHHHHHHhCCCEEEEcC---Ce----eeEEECCCC
Confidence 4445679999999874211 100000 001224456678889998876542 12 356779999
Q ss_pred Ceeee
Q 027914 114 SDLGL 118 (217)
Q Consensus 114 ~~~~~ 118 (217)
+++..
T Consensus 230 ~ii~~ 234 (270)
T cd07571 230 RIVAR 234 (270)
T ss_pred cEEee
Confidence 98754
No 121
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=44.81 E-value=61 Score=19.84 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCe
Q 027914 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~ 115 (217)
...+.++.....+.++-|... ..|+.|+..++++.++++
T Consensus 18 ~~~~~~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v 56 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKV 56 (62)
T ss_pred HHHHHHHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeE
Confidence 467888888888887777665 577899999999877654
No 122
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=44.42 E-value=28 Score=26.25 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=40.9
Q ss_pred EEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 156 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 156 ~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
.+||+++....++.++..|.|.+-..-.. +|+ ...+.-..+....|.+.|+..++
T Consensus 86 ~~Cy~~RL~~tA~~A~e~gfd~FtTTL~~--Sp~----k~~~~I~~iG~~~~~~~gv~f~~ 140 (176)
T PF02677_consen 86 RVCYDLRLEKTAQYAKELGFDYFTTTLLI--SPY----KNHELINEIGERLAKEYGVEFLY 140 (176)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEccccC--cCc----cCHHHHHHHHHHHHHhhCCeEEe
Confidence 46999999999999999999988765543 665 35666667777777777766553
No 123
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=44.32 E-value=74 Score=27.62 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCcchH--------HHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHH-HHhhhhhccccEEEEe
Q 027914 149 KFAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWR-RVMQGHAGANVVSYTD 216 (217)
Q Consensus 149 ~~~~ig~~IC~d~~~p~--------~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~-~~~~~rA~en~~~vv~ 216 (217)
++--++.+||.|..|-+ +...+.+.++|+++.--++.. .++..-- .++++-..+.+++++.
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNa-------grYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNA-------GRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCC-------ccHHHHHHHHHHHHHHhhCCCeEE
Confidence 34467999999999865 233345788999998666542 2343322 3344444467777764
No 124
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=43.55 E-value=76 Score=27.54 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=38.5
Q ss_pred CCceEEEEEecCCcchH--------HHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHH-HHhhhhhccccEEEEe
Q 027914 149 KFAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWR-RVMQGHAGANVVSYTD 216 (217)
Q Consensus 149 ~~~~ig~~IC~d~~~p~--------~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~-~~~~~rA~en~~~vv~ 216 (217)
++--++.+||.|..|-+ +...+.+.++|+++.--++.. .++..-- .++++-..+.+++++.
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNa-------grYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNA-------GRYGVACGEICKVVQDKLNVPAVT 112 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCC-------ccHHHHHHHHHHHHHHhhCCCeEE
Confidence 34457999999999865 233345788999998666542 2333322 3344444467777764
No 125
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=42.81 E-value=43 Score=28.12 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=39.5
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~ 114 (217)
|...+++++++=|-.- +..+ .....+.+.+.++.++.+++|++-..+.+. ..+.+..++++ +|+
T Consensus 154 AL~~~P~iLLlDEPts-~LD~-------------~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~-~G~ 218 (343)
T TIGR02314 154 ALASNPKVLLCDEATS-ALDP-------------ATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS-NGE 218 (343)
T ss_pred HHHhCCCEEEEeCCcc-cCCH-------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 4445778888877331 1111 111345677888888778887776544332 24556777774 787
Q ss_pred eee
Q 027914 115 DLG 117 (217)
Q Consensus 115 ~~~ 117 (217)
++.
T Consensus 219 iv~ 221 (343)
T TIGR02314 219 LIE 221 (343)
T ss_pred EEE
Confidence 653
No 126
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=42.62 E-value=1.2e+02 Score=23.67 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=27.8
Q ss_pred ceeEecCCceEEEEEecCCcch---------------------HHHHHHHHcCCcEEEeccCCCC
Q 027914 143 FKVFQTKFAKIGVAICWDQWFP---------------------EAARAMVLQGAEILFYPTAIGS 186 (217)
Q Consensus 143 ~~~~~~~~~~ig~~IC~d~~~p---------------------~~~~~~~~~g~dlil~~~~~~~ 186 (217)
+.+++.++.|||++=+.+...+ +..+.+.++ +|++++.+.|+.
T Consensus 123 ~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~ 186 (239)
T cd07381 123 PAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGV 186 (239)
T ss_pred cEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcc
Confidence 5677778888887655543321 223344444 999999999864
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=42.57 E-value=49 Score=25.74 Aligned_cols=42 Identities=7% Similarity=0.098 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++....... ..+.+..+++ .+|+++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~G~i~ 194 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML-TNGPAA 194 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-eCCcEe
Confidence 45567777777767666665444332 2445566777 477765
No 128
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=42.53 E-value=13 Score=25.62 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=29.4
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEE
Q 027914 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYT 215 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv 215 (217)
|.+...+....+|++++..+-..++ ...-....|..|+++++|++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~-------~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKR-------VLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCc-------cccCcEeeehhhHhhCCccc
Confidence 6677777778899999976522211 01111456788999999875
No 129
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=48 Score=24.53 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=15.6
Q ss_pred eEEEEEEECCCCCeeeeeeccc
Q 027914 102 HYNSIAIIDADGSDLGLYRKSH 123 (217)
Q Consensus 102 ~~Ns~~~i~~~G~~~~~y~K~~ 123 (217)
.--+.++|+++|.+...+++..
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~ 140 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVK 140 (157)
T ss_pred ccceEEEECCCCeEEEEecCCC
Confidence 3446788999998877775543
No 130
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=42.03 E-value=1.1e+02 Score=22.15 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=38.9
Q ss_pred EEEEEeccCCC-----CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHH
Q 027914 10 VVSALQFACTD-----DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (217)
Q Consensus 10 ~ia~vQ~~~~~-----~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (217)
.+.+++....+ +.++-.+.+.+.++.+.+.++++++..=. .+.. ....+ ...+.+.++++|+
T Consensus 66 d~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~-~~~~----~~~~~--------~~~~~~~~~~~a~ 132 (177)
T cd01822 66 DLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQ-APPN----YGPRY--------TRRFAAIYPELAE 132 (177)
T ss_pred CEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCc----cchHH--------HHHHHHHHHHHHH
Confidence 45566665522 34555566667777777778898875210 0100 00001 1346688889999
Q ss_pred HcCcEEe
Q 027914 85 ELGVVMP 91 (217)
Q Consensus 85 ~~~i~i~ 91 (217)
++++..+
T Consensus 133 ~~~~~~~ 139 (177)
T cd01822 133 EYGVPLV 139 (177)
T ss_pred HcCCcEe
Confidence 9887644
No 131
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.02 E-value=54 Score=25.51 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++.....+. ..+.+..++++ +|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 45577777777656666665443322 23556777774 78764
No 132
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=41.58 E-value=42 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.026 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccC
Q 027914 27 ATAERLVRAAHGKGANIILIQELFEG 52 (217)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (217)
....+.+.++.++|-.+++|||...+
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 44445555666788899999998754
No 133
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=41.36 E-value=79 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++.....+.-...+..+++ .+|+++
T Consensus 170 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l-~~G~i~ 211 (236)
T TIGR03864 170 AIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL-HRGRVL 211 (236)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE-eCCeEE
Confidence 455777777765555655544333221225566777 478764
No 134
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=40.71 E-value=27 Score=23.70 Aligned_cols=46 Identities=11% Similarity=0.009 Sum_probs=30.8
Q ss_pred cchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 162 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 162 ~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
..|++...+....+|++++... ... ...--..+|-.|+++++|++-
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~-~~~--------~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPS-GKR--------AIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCC-CCc--------cCccHHHHHHHHHHhCCCEEe
Confidence 3477777777778999999654 211 111124567889999999873
No 135
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=40.33 E-value=58 Score=24.91 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCC
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~ 114 (217)
.+.+.+.+++++.+.+|++.....+.-...+..++++ +|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~-~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELR-DGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEee-CCc
Confidence 4556777777655666655443322112455666663 553
No 136
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=40.10 E-value=1.4e+02 Score=21.73 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=38.3
Q ss_pred EEEEEeccCC------CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHH
Q 027914 10 VVSALQFACT------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (217)
Q Consensus 10 ~ia~vQ~~~~------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (217)
.+.++.+... .+.++-.+.+..+++++...+++++++.-.-.... .......... ...+.+.++++|
T Consensus 69 d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~--~~~~~~~~~~-----~~~~n~~l~~~a 141 (185)
T cd01832 69 DLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVL--EPFRRRVRAR-----LAAYNAVIRAVA 141 (185)
T ss_pred CEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCcccc--chhHHHHHHH-----HHHHHHHHHHHH
Confidence 4555555542 12344455556666666667888888753222011 1100001011 134567889999
Q ss_pred HHcCcEE
Q 027914 84 KELGVVM 90 (217)
Q Consensus 84 ~~~~i~i 90 (217)
++.++..
T Consensus 142 ~~~~v~~ 148 (185)
T cd01832 142 ARYGAVH 148 (185)
T ss_pred HHcCCEE
Confidence 9888664
No 137
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=39.98 E-value=37 Score=26.77 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee-ecCCceEEEEEE
Q 027914 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAHYNSIAI 108 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~Ns~~~ 108 (217)
+-.|.+|...++++++|=|-.- ..+|..-++.++.+.++|++. +++++-..+ ..-...-+..++
T Consensus 144 RVAIARALaM~P~vmLFDEPTS--------------ALDPElv~EVL~vm~~LA~eG-mTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTS--------------ALDPELVGEVLDVMKDLAEEG-MTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcc--------------cCCHHHHHHHHHHHHHHHHcC-CeEEEEechhHHHHHhhheEEE
Confidence 3456667778999999999311 111111245678888898875 665554332 222344456667
Q ss_pred ECCCCCeeeee
Q 027914 109 IDADGSDLGLY 119 (217)
Q Consensus 109 i~~~G~~~~~y 119 (217)
++ +|.++...
T Consensus 209 md-~G~iie~g 218 (240)
T COG1126 209 MD-QGKIIEEG 218 (240)
T ss_pred ee-CCEEEEec
Confidence 74 88665544
No 138
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.84 E-value=52 Score=26.52 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+.-...+.++++ .+|++.
T Consensus 178 ~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l-~~G~i~ 219 (279)
T PRK13650 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM-KNGQVE 219 (279)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 456777878777677766654433222345667777 478764
No 139
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=39.63 E-value=1.1e+02 Score=27.27 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=42.9
Q ss_pred ceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEE
Q 027914 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYT 215 (217)
Q Consensus 151 ~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv 215 (217)
.++|..|+..-...|-.+.|.+.|+|+|+.-+..+ .+...|..+.+.|+.--+..++
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g--------~~~~~~~~i~~ik~~~p~~~vi 293 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQG--------DSIYQLEMIKYIKKTYPELDVI 293 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCC--------CcHHHHHHHHHHHHhCCCCcEE
Confidence 57888898766667889999999999999877632 4677888777777754445554
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=39.49 E-value=57 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++.+..+++.....+.-...+..++++ +|++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~-~G~i 219 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMK-DGQL 219 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEe-CCEe
Confidence 4456677777665666655443322112236666774 6654
No 141
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=39.12 E-value=58 Score=25.10 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
+..|.+|.+-.+++++|-|-.- .+-+++ -++.+..++++|++...-+++..
T Consensus 160 R~aIARaLameP~vmLFDEPTS------ALDPEl--------VgEVLkv~~~LAeEgrTMv~VTH 210 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTS------ALDPEL--------VGEVLKVMQDLAEEGRTMVVVTH 210 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcc------cCCHHH--------HHHHHHHHHHHHHhCCeEEEEee
Confidence 4556677777899999988311 111111 14567889999999877666654
No 142
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=38.95 E-value=58 Score=25.18 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCC
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~ 114 (217)
.+.+.+.++.++.+..+++.....+.-...+..++++.++.
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 34566677777656666554433221123566677754443
No 143
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.59 E-value=24 Score=28.19 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=41.5
Q ss_pred CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCe
Q 027914 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (217)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~ 115 (217)
..+|++++=|.--.|-. .|. .+..+.+.++.++..+.|+++.-...=.++.|+++++ .+|++
T Consensus 164 ~~pdILllDEvlavGD~------~F~--------~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l-~~G~i 225 (249)
T COG1134 164 VEPDILLLDEVLAVGDA------AFQ--------EKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL-EHGQI 225 (249)
T ss_pred cCCCEEEEehhhhcCCH------HHH--------HHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEE-eCCEE
Confidence 47789998885433321 122 2456888888888877777775433334788999999 58865
No 144
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.33 E-value=63 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++.+.++++.....+. ..+.+..++++ +|++
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i 210 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGRL 210 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCEE
Confidence 45577777777656666555433322 23445666774 6765
No 145
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=37.91 E-value=2.9e+02 Score=24.57 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=37.1
Q ss_pred CceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEE
Q 027914 150 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYT 215 (217)
Q Consensus 150 ~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv 215 (217)
..++|.+++..-...+....+.+.|+|+|...+.-+ .+...|..+.+.|..-.+++|+
T Consensus 229 rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G--------~s~~~~~~i~~ik~~~~~~~v~ 286 (495)
T PTZ00314 229 QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQG--------NSIYQIDMIKKLKSNYPHVDII 286 (495)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC--------CchHHHHHHHHHHhhCCCceEE
Confidence 357888888654456778889999999999877622 2344455554444432245554
No 146
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=37.79 E-value=89 Score=22.81 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHH--------------HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHH
Q 027914 20 DDVSTNLATAERLVRA--------------AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (217)
Q Consensus 20 ~~~~~n~~~~~~~i~~--------------a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (217)
+|-++.++.+.+.+.. ..+.+-++++-|-+.+.+...-+.+++|...+.+....+..+.+-+.+++
T Consensus 36 ~Dt~~~~~~~~~Kil~lRif~de~gk~~~Sv~d~~geiL~VSQFTL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~ 115 (145)
T TIGR00256 36 DDDEQKADKLAEKVLNYRIFSDSEGKMNLNVQQAGGEILSVSQFTLAADTKKGMRPSFSKGASPDRAEELYEYFVELCRE 115 (145)
T ss_pred CCCHHHHHHHHHHHhheEeccCCCCCccCCHHHCCCCEEEEECCcccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 4555556665555443 23346799999999998877555566777766665555666777777776
Q ss_pred cCcEEeee
Q 027914 86 LGVVMPVS 93 (217)
Q Consensus 86 ~~i~i~~g 93 (217)
.+..+-.|
T Consensus 116 ~~~~V~~G 123 (145)
T TIGR00256 116 KGMKVQTG 123 (145)
T ss_pred cCCCceEC
Confidence 65554444
No 147
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=2.8e+02 Score=24.27 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCc-----ccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee-eee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGY-----YFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~ 95 (217)
.+.|++.|.+.+++ .++|++|.=---.-. -.+++.. .. .+....|.++||..++++++ |..
T Consensus 153 aEt~~e~I~~~l~~---~~p~lvVIDSIQT~~s~~~~SapGsVs-QV---------Re~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 153 AETNLEDIIAELEQ---EKPDLVVIDSIQTLYSEEITSAPGSVS-QV---------REVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred hhcCHHHHHHHHHh---cCCCEEEEeccceeecccccCCCCcHH-HH---------HHHHHHHHHHHHHcCCeEEEEEEE
Confidence 46678877777765 577777653211100 0111110 01 24567899999999999854 777
Q ss_pred eecCC--------ceEEEEEEEC
Q 027914 96 EEANN--------AHYNSIAIID 110 (217)
Q Consensus 96 ~~~~~--------~~~Ns~~~i~ 110 (217)
.+++. +.-.+.+.|.
T Consensus 220 TKeG~IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 220 TKEGAIAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred cccccccCchheeeeeeEEEEEe
Confidence 77652 5567777773
No 148
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.65 E-value=60 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.......-...+.++++ .+|.++
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l-~~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVM-NKGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE-ECCEEE
Confidence 456777888777677766654332211235566777 377654
No 149
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=37.31 E-value=1.2e+02 Score=24.07 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
..+.++++..++.++|.|++|..=.+++ +..+.+.+.++++..+..+.+
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALa-------------------d~~l~erl~~lak~~~~rv~~ 117 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALA-------------------DEGLRERLRELAKCGGARVYL 117 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhcc-------------------ChHHHHHHHHHHhcCCcEEEe
Confidence 4566777888888899999998876664 246788999999988766544
No 150
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.25 E-value=72 Score=24.31 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~ 115 (217)
...+.+.+++++.+..|++....... ..+.+..+++. +|++
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~-~G~i 209 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVMN-EGRI 209 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE-CCEE
Confidence 45577777776656666655443321 34455666773 6765
No 151
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=37.00 E-value=1.8e+02 Score=21.78 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred EEEEEeccCCC-----CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHH
Q 027914 10 VVSALQFACTD-----DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (217)
Q Consensus 10 ~ia~vQ~~~~~-----~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (217)
.+.++++..++ +.++-.+.+.+.++++.+.++++++++- .++.. ....+ ...+.+.++++|+
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~-~~P~~----~~~~~--------~~~~~~~~~~~a~ 139 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQI-RLPAN----YGRRY--------NEAFSAIYPKLAK 139 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEe-ecCCc----ccHHH--------HHHHHHHHHHHHH
Confidence 56667776632 3455556666666666667888877631 11111 00001 0234566888999
Q ss_pred HcCcEE
Q 027914 85 ELGVVM 90 (217)
Q Consensus 85 ~~~i~i 90 (217)
++++..
T Consensus 140 ~~~v~~ 145 (191)
T PRK10528 140 EFDIPL 145 (191)
T ss_pred HhCCCc
Confidence 998664
No 152
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=36.97 E-value=16 Score=19.41 Aligned_cols=9 Identities=56% Similarity=1.272 Sum_probs=7.3
Q ss_pred EecCCcchH
Q 027914 157 ICWDQWFPE 165 (217)
Q Consensus 157 IC~d~~~p~ 165 (217)
+|||..||-
T Consensus 22 vCyD~~fPi 30 (34)
T smart00037 22 VCYDQAFPI 30 (34)
T ss_pred eeccccccC
Confidence 599998874
No 153
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=36.54 E-value=80 Score=25.45 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+.-...+..+++ .+|+++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l-~~G~i~ 223 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM-DSGKVV 223 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE-ECCEEE
Confidence 456777777776677766654332221225566777 477764
No 154
>smart00642 Aamy Alpha-amylase domain.
Probab=36.42 E-value=1.8e+02 Score=21.55 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCccc--------CcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFE--------GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (217)
+++.+.+.+...++.|++-|.++-..- .||.+.+. ..........+-++.+.+.|++.+|.|+.-..-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~----~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY----KQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc----CCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 355566666666778999987766522 23332222 111111112345777888888899999887544
Q ss_pred ec
Q 027914 97 EA 98 (217)
Q Consensus 97 ~~ 98 (217)
..
T Consensus 93 NH 94 (166)
T smart00642 93 NH 94 (166)
T ss_pred CC
Confidence 43
No 155
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.01 E-value=76 Score=24.14 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++.....+. ..+.+..++++ +|++.
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~ 208 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRIA 208 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEEe
Confidence 45577777776667766665443322 24455667773 77653
No 156
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=35.96 E-value=1.4e+02 Score=25.93 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=30.2
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
.+|.||+..+=-+.-..-+.+.|...||++.+..+|
T Consensus 30 l~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~n 65 (406)
T TIGR00936 30 LKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCN 65 (406)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccC
Confidence 368899887777777788899999999999988887
No 157
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=35.08 E-value=65 Score=24.74 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.++.++.+..+++-....+--.+.+..++++ +|++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 179 DVVELMQKLAREQGCTILIVTHDNRILDVADRIVHME-DGKL 219 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEE-CCEE
Confidence 4567777777655666655443332224556666663 5643
No 158
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.86 E-value=1.2e+02 Score=24.53 Aligned_cols=30 Identities=7% Similarity=-0.020 Sum_probs=26.2
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCC
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~ 184 (217)
+.+.+.+..+|-.+.+...|+|-+++-|..
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 456888999999999999999999998875
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=34.79 E-value=1.4e+02 Score=20.52 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeee
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (217)
+.+...+.++++.+.|++-++|--. ...+.+.+.++++++.+++.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 4667777888887778877666553 12377888999999998764
No 160
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.77 E-value=1.7e+02 Score=21.00 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=38.4
Q ss_pred EEEEEeccCCC-----CHHHHHHHHHHHHHHHHh--CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHH
Q 027914 10 VVSALQFACTD-----DVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (217)
Q Consensus 10 ~ia~vQ~~~~~-----~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
.+.+++....+ +.++-.+.+...++.+.+ .++.+++..=.-..+.. .. .... -..+.+.++++
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~-~~----~~~~-----~~~~n~~l~~~ 119 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK-SI----PNEQ-----IEELNRQLAQL 119 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC-cC----CHHH-----HHHHHHHHHHH
Confidence 45666665521 345555555566666655 68898886421111000 00 0000 02456778889
Q ss_pred HHHcCcEEe
Q 027914 83 AKELGVVMP 91 (217)
Q Consensus 83 a~~~~i~i~ 91 (217)
|++.++.++
T Consensus 120 a~~~~~~~i 128 (169)
T cd01828 120 AQQEGVTFL 128 (169)
T ss_pred HHHCCCEEE
Confidence 998887754
No 161
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=34.74 E-value=73 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|++.
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 225 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM-YAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-eCCEEE
Confidence 44567777777656666555433322 2345566777 467653
No 162
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=34.72 E-value=80 Score=25.30 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=42.0
Q ss_pred hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecC--CceEEEEEEECCCCC
Q 027914 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEAN--NAHYNSIAIIDADGS 114 (217)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~--~~~~Ns~~~i~~~G~ 114 (217)
+.||+++.+|-.+.. .-+. .-+--.++.-|-+.+++++...- .+.+ ..-|--.+++||-|.
T Consensus 184 ~~gA~iLtyPSAFT~--~TG~--------------AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGt 247 (295)
T KOG0807|consen 184 KMGAQILTYPSAFTI--KTGE--------------AHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGT 247 (295)
T ss_pred HcCCcEEeccchhhh--cccH--------------HHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhh
Confidence 679999999986531 1110 11223455666688999987532 2222 223434578889999
Q ss_pred eeeeeecc
Q 027914 115 DLGLYRKS 122 (217)
Q Consensus 115 ~~~~y~K~ 122 (217)
+++.+...
T Consensus 248 Vva~~se~ 255 (295)
T KOG0807|consen 248 VVARCSER 255 (295)
T ss_pred hheecCCC
Confidence 98876654
No 163
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=34.58 E-value=66 Score=24.81 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++.+..|++.......-...+..+++ .+|++
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l-~~g~i 224 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL-VNGQL 224 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEE
Confidence 445677777776566665544332211223455666 36765
No 164
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=34.54 E-value=95 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=30.6
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
.+|.||+..+=-+.-..-+.+.|...||++.+..+|
T Consensus 34 ~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~n 69 (413)
T cd00401 34 LKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCN 69 (413)
T ss_pred CCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCC
Confidence 378899888777777888899999999999988886
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.54 E-value=73 Score=25.73 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+..|++.......-...+..+++ .+|+++
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l-~~G~i~ 222 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL-DDGKLL 222 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 456777777776666666554332221345566677 478765
No 166
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=34.31 E-value=99 Score=24.93 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCc-EEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 25 NLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+.+...++.+.|.+.|+| +++.|-.+.. +. .....+.++++++..++.+++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~---~~--------------~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNK---PS--------------QEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCC---CC--------------HHHHHHHHHHHHhcCCCCEEE
Confidence 566777888888889999 5566543321 11 134667788888876776653
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.24 E-value=94 Score=24.79 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.......-...+..++++ +|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~-~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN-KGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEE-CCEEE
Confidence 3456667766655666655443332222255666774 78764
No 168
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=34.15 E-value=95 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++.....+. ..+.+..++++ +|+++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~-~G~i~ 225 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEIV 225 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE-CCEEE
Confidence 44567777776656666665443332 24456667774 77654
No 169
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.12 E-value=1.1e+02 Score=24.87 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+.+...++.+.|.+.|+| +++.|-.+.. .+ .....+.++.+++..++.|++
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~----~~-------------~~~i~~~~~~i~~~~~~pi~l 129 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNK----PT-------------QEGLYQHFKAIAEEVDLPIIL 129 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCC----CC-------------HHHHHHHHHHHHhcCCCCEEE
Confidence 3577778888888889999 5555543321 11 135667788888776766643
No 170
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.99 E-value=77 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++.....+. ..+.+..+++ .+|+++
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 220 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM-EKGEVV 220 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566777777656666665443332 2345666777 478764
No 171
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=33.76 E-value=34 Score=23.22 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCCcEE-EecCc
Q 027914 25 NLATAERLVRAAHGKGANII-LIQEL 49 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlv-v~PE~ 49 (217)
+.......++.|.++++||+ |-||.
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChH
Confidence 44555566666677888874 45773
No 172
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=33.73 E-value=1.8e+02 Score=20.74 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEecCcccC
Q 027914 30 ERLVRAAHGKGANIILIQELFEG 52 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~ 52 (217)
.+.++.|.+.++|+|.+.-+..+
T Consensus 40 e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred HHHHHHHHHcCCCEEEEeccccC
Confidence 35666777889999998766544
No 173
>PRK07534 methionine synthase I; Validated
Probab=33.69 E-value=2.8e+02 Score=23.29 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA 98 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~ 98 (217)
.++-.+.+..+++...+.|+|+++|-=+.- -.....+.+++++.++.+++++..++
T Consensus 126 ~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~---------------------l~E~~a~~~~~~~~~~Pv~vSft~~~ 181 (336)
T PRK07534 126 HALAVEAFHEQAEGLKAGGADVLWVETISA---------------------PEEIRAAAEAAKLAGMPWCGTMSFDT 181 (336)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeccCC---------------------HHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 455566666667666678999999854211 12234556667777777777765443
No 174
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.67 E-value=2.3e+02 Score=22.15 Aligned_cols=61 Identities=7% Similarity=-0.054 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccc-hhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+...+.+.+.++.|.+-|+..|.++-. ..+... ..+..+.. -+.++.+.+.|++.|+.+.+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~g----~~~~~~~~~~~~~~~-----~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLAG----KRPAGVSPEEARATL-----VENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECcC----CCCCCCCHHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 334567778888888889998876432 222111 11111111 13467777888999988766
No 175
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.64 E-value=86 Score=24.45 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|++.
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 216 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM-NKGRIE 216 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCeEE
Confidence 45567777777656666555433322 2345566777 478764
No 176
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.60 E-value=1e+02 Score=24.61 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+..+++.....+.-...+..+++ .+|++.
T Consensus 180 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l-~~G~i~ 221 (271)
T PRK13632 180 EIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF-SEGKLI 221 (271)
T ss_pred HHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEE-ECCEEE
Confidence 455777777766545555543332221245566677 478754
No 177
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=33.58 E-value=1.2e+02 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=28.8
Q ss_pred CCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 149 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 149 ~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
+|.||+..+=-+.-..-+.+.|...||++.++.+|
T Consensus 42 ~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sN 76 (268)
T PF05221_consen 42 KGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSN 76 (268)
T ss_dssp TTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESS
T ss_pred CCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCC
Confidence 78899886666766778899999999999999998
No 178
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=33.43 E-value=1.6e+02 Score=20.17 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=45.3
Q ss_pred EEEEeccC--CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914 11 VSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (217)
Q Consensus 11 ia~vQ~~~--~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (217)
+.++.+-. -..+...+..+.++.++..+.++.++...- +.+. .....+.++++++++++
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~----------------~~~~~~~~~~~~~~~~~ 85 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFA----------------FERDLANVKSAVLRYGI 85 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc---Cccc----------------cccCHHHHHHHHHHcCC
Confidence 44444433 134556677777777666556666655421 0000 01224567777777766
Q ss_pred EEeeee-eee-----cCCceEEEEEEECCCCCeeee
Q 027914 89 VMPVSF-FEE-----ANNAHYNSIAIIDADGSDLGL 118 (217)
Q Consensus 89 ~i~~g~-~~~-----~~~~~~Ns~~~i~~~G~~~~~ 118 (217)
..-.-. ... .+-.-.-+.+++|++|+++..
T Consensus 86 ~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 86 TYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 432111 110 111224467889999987644
No 179
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=33.19 E-value=1.9e+02 Score=21.05 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=39.4
Q ss_pred eEEEEEeccCCC-----CHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHH
Q 027914 9 VVVSALQFACTD-----DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (217)
Q Consensus 9 ~~ia~vQ~~~~~-----~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (217)
..+.+++...++ +.++-.+.+.++++.+.+.++.+|+.--.....+............ ...+.+.++++|
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~-----~~~~n~~~~~~a 134 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANK-----LKSLNRWLKDYA 134 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHH-----HHHHHHHHHHHH
Confidence 456677765521 3455555666666666777888877632111111000000000000 124667888999
Q ss_pred HHcCcEE
Q 027914 84 KELGVVM 90 (217)
Q Consensus 84 ~~~~i~i 90 (217)
++.++.+
T Consensus 135 ~~~~v~~ 141 (183)
T cd04501 135 RENGLLF 141 (183)
T ss_pred HHcCCCE
Confidence 9887664
No 180
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=32.56 E-value=93 Score=26.56 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=32.7
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccCC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~ 184 (217)
.+|.||+..+-.+.-..-+...|...|+++.+.++|.
T Consensus 43 lkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNp 79 (420)
T COG0499 43 LKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNP 79 (420)
T ss_pred CCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCC
Confidence 3788999988888888889999999999999999883
No 181
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=32.45 E-value=1.6e+02 Score=24.31 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEE
Q 027914 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSI 106 (217)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~ 106 (217)
+++..+..+.=..++++.+=|-.+. .. ... .....+.+++..++++.+|+.....-+ =....+..
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTvg-LD-------V~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTVG-LD-------VNA------QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCccC-cc-------hhH------HHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 4444444444468899999995442 11 000 135678889999999999988654332 24677788
Q ss_pred EEECCCCCeee
Q 027914 107 AIIDADGSDLG 117 (217)
Q Consensus 107 ~~i~~~G~~~~ 117 (217)
++++ +|+++.
T Consensus 228 ~~I~-~Gqlv~ 237 (325)
T COG4586 228 LLID-QGQLVF 237 (325)
T ss_pred EEee-CCcEee
Confidence 8995 887763
No 182
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=32.28 E-value=86 Score=24.68 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++-....+. ..+.+..+++ .+|+++
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l-~~G~i~ 226 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF-DKGRIV 226 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 44567777777656666665443332 2345666777 478764
No 183
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.19 E-value=1.5e+02 Score=19.72 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeeeee
Q 027914 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~ 120 (217)
++.+.+...+.++.+...-.....+...+++.+.||+|..+..+.
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 72 VAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred HHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEE
Confidence 455566666778886543211111223457889999998775543
No 184
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=32.13 E-value=59 Score=23.30 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecCcccC
Q 027914 24 TNLATAERLVRAAHGKGANIILIQELFEG 52 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (217)
.+-+++.++.++|.+.+..++.||+.+.+
T Consensus 61 a~~~~L~~l~~~a~~~~i~~~~F~~~aq~ 89 (133)
T PF09391_consen 61 ANSEQLRELRQKALEREITVVDFTDEAQS 89 (133)
T ss_dssp E-HHHHHHHHHHHHHTT---EEEEGGGGG
T ss_pred cCHHHHHHHHHHHHHCCCeEEeChHHHhh
Confidence 36778888888888889999999998764
No 185
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.10 E-value=86 Score=25.21 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+.++++.....+. ....+..+++ .+|+++
T Consensus 175 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l-~~G~i~ 217 (277)
T PRK13652 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVM-DKGRIV 217 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCeEE
Confidence 45577777777667777665544332 2345566777 478764
No 186
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=32.08 E-value=87 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+.++++....... ..+.+..+++ .+|+++
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l-~~g~~~ 210 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM-NDGQIQ 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-ECCEEE
Confidence 35567777777656666555443322 2334566667 467653
No 187
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.04 E-value=79 Score=25.41 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.......-..-+.++++. +|+++
T Consensus 178 ~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~-~G~i~ 219 (277)
T PRK13642 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMK-AGEII 219 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEE-CCEEE
Confidence 4567777777776777666543332212355667774 77764
No 188
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=31.93 E-value=77 Score=26.70 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~ 114 (217)
|...+++++++=|-.- +. +. .....+.+.+.++.++.++++++-..+... -.+.+..++++ +|+
T Consensus 150 AL~~~P~llLLDEP~s-~L---D~----------~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~-~G~ 214 (353)
T PRK10851 150 ALAVEPQILLLDEPFG-AL---DA----------QVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS-QGN 214 (353)
T ss_pred HHhcCCCEEEEeCCCc-cC---CH----------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCE
Confidence 4445778888888321 11 00 001245677888888778777666544432 24455667774 777
Q ss_pred eee
Q 027914 115 DLG 117 (217)
Q Consensus 115 ~~~ 117 (217)
++.
T Consensus 215 i~~ 217 (353)
T PRK10851 215 IEQ 217 (353)
T ss_pred EEE
Confidence 643
No 189
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.92 E-value=1.3e+02 Score=24.88 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCc-EEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc-CcEEee
Q 027914 25 NLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV 92 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~ 92 (217)
+.+...++.+.|.+.|+| ++|.|-+... .+ .....+.++.+++.. ++.|++
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~P~y~~----~~-------------~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGRPMWLP----LD-------------VDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCcCCC----CC-------------HHHHHHHHHHHHHhCCCCcEEE
Confidence 567777888888888998 5666654321 11 135677788888877 566644
No 190
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=31.87 E-value=2e+02 Score=20.92 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECC
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (217)
.+.+|.-.+++++++=|-.. .+ +....+.+.++.++.+..+++-..+...-...+..++++.
T Consensus 101 ~laral~~~p~~lllDEPt~------~L------------D~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~ 162 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS------AL------------DEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDG 162 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc------cc------------CHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcC
Confidence 44555667999999999322 11 1233444555555545555443332222234555666665
Q ss_pred CC
Q 027914 112 DG 113 (217)
Q Consensus 112 ~G 113 (217)
.|
T Consensus 163 ~~ 164 (166)
T cd03223 163 EG 164 (166)
T ss_pred CC
Confidence 55
No 191
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=31.81 E-value=61 Score=23.69 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=36.2
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEEC
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIID 110 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~ 110 (217)
.+..|.-.+++++++=|-.. +.... ......+.+++++++ +.++++.....+ -....+..+++
T Consensus 92 ~laral~~~p~illlDEP~~-~LD~~-------------~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l- 155 (163)
T cd03216 92 EIARALARNARLLILDEPTA-ALTPA-------------EVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVL- 155 (163)
T ss_pred HHHHHHhcCCCEEEEECCCc-CCCHH-------------HHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-
Confidence 34555667999999988422 11100 012345666666544 555555433322 12344566667
Q ss_pred CCCCee
Q 027914 111 ADGSDL 116 (217)
Q Consensus 111 ~~G~~~ 116 (217)
.+|+++
T Consensus 156 ~~g~i~ 161 (163)
T cd03216 156 RDGRVV 161 (163)
T ss_pred ECCEEE
Confidence 367653
No 192
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.36 E-value=1.1e+02 Score=23.70 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l-~~G~i~ 216 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL-YDGKIV 216 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE-ECCeEE
Confidence 44567777776556666554433321 2445667777 478764
No 193
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=30.94 E-value=1.1e+02 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+..|++....... ..+.+..++++ +|++.
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~-~g~i~ 208 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVS-QGKIK 208 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE-CCeEE
Confidence 45677777776656666554433322 23445666673 67654
No 194
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=30.89 E-value=1.5e+02 Score=21.74 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=37.6
Q ss_pred hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeee
Q 027914 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (217)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (217)
+.+-++++-|-+.+.+-+.-+.+++|...+.+....++.+.+-+..++.+..+-.|
T Consensus 68 d~~geiL~VsQFTL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~~~~~~V~~G 123 (147)
T PRK05273 68 DVGGEILVVSQFTLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALRAQGVPVETG 123 (147)
T ss_pred HCCCCEEEEEcccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCceeec
Confidence 34679999999998877655556667766665544556667777777665544333
No 195
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.80 E-value=83 Score=25.53 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+.++++ .+|+++
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l-~~G~i~ 225 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM-HKGTVF 225 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677777877767777665443322 2445677777 488765
No 196
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=30.64 E-value=2.2e+02 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=30.2
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
.+|.||++.+=-+.-...+.+.|...|+++.+..+|
T Consensus 46 l~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~n 81 (425)
T PRK05476 46 LKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCN 81 (425)
T ss_pred CCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCC
Confidence 367889888888888888999999999998887776
No 197
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=30.53 E-value=1.3e+02 Score=22.36 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=27.1
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
+.++|-.+++|||..-+. ...+..-...+|++.++.|+--.
T Consensus 93 ~lk~g~~v~ifpeG~r~~------------------~~~~~~G~~~lA~~~~~pIvPv~ 133 (189)
T cd07983 93 ALKDGYNIAITPDGPRGP------------------RYKVKPGVILLARKSGAPIVPVA 133 (189)
T ss_pred HHhCCCEEEEcCCCCCCc------------------ceecchHHHHHHHHhCCCEEEEE
Confidence 345688999999974211 01344667788899998876543
No 198
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=30.49 E-value=86 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l-~~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI-DAGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677777777767777665543322 2445666777 477765
No 199
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=30.45 E-value=1e+02 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCc
Q 027914 19 TDDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (217)
Q Consensus 19 ~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g 53 (217)
++.-.+-.+.+..++.+|.++++++.+|-|.+.+|
T Consensus 114 ~G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 114 PGPDNDLNDDLEPYLQRAISDDATIYVFGEPFRPG 148 (206)
T ss_pred CCCcchHHHHHHHHHHHHHhCCCEEEEECceecCC
Confidence 33345566777788999999999999999987665
No 200
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=30.32 E-value=3.1e+02 Score=23.48 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhCCCc-EEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc--CcEEee
Q 027914 23 STNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPV 92 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~i~i~~ 92 (217)
+..++...+.|+-|.+-|++ +++||-..-..+.......+..+.. .+.+..+.+.|++. ++.+.+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~-----~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRM-----REALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHH-----HHHHHHHHHHHHhhCCCcEEEE
Confidence 56678888899999999987 5555643222222111111111111 13456666777775 476655
No 201
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=30.14 E-value=2.8e+02 Score=22.01 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=25.1
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
+....+|+|+|+.|-...... + . ......++.-|-+++++++...
T Consensus 163 r~l~~~ga~ii~~ps~~~~~~--~-----~---------~~~~~~~~arA~en~~~vv~an 207 (280)
T cd07574 163 RALAEAGADLLLVPSCTDTRA--G-----Y---------WRVRIGAQARALENQCYVVQSG 207 (280)
T ss_pred HHHHHcCCCEEEECCcCCccc--c-----H---------HHHHHHHHHHHHhhCceEEEeC
Confidence 334467999999986432110 0 0 0112234556777889987653
No 202
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=30.06 E-value=2e+02 Score=20.18 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEec
Q 027914 21 DVSTNLATAERLVRAAHGKGANIILIQ 47 (217)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (217)
-+...+..+.+..++..+.++++|...
T Consensus 43 ~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 43 VCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred cHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 355566666666666666677776664
No 203
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=30.04 E-value=1.1e+02 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++....... ..+.+..++++ +|++.
T Consensus 190 ~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~-~g~i~ 232 (262)
T PRK09984 190 IVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHVF 232 (262)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 44567777776656666665443321 23445666774 67654
No 204
>PRK11756 exonuclease III; Provisional
Probab=29.98 E-value=1.1e+02 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCccc
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFE 51 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (217)
....+++.+.|+ +.++|+|+|.|.-.
T Consensus 12 ~~~~~~i~~~i~---~~~pDIi~LQE~~~ 37 (268)
T PRK11756 12 RARPHQLEAIIE---KHQPDVIGLQETKV 37 (268)
T ss_pred HHHHHHHHHHHH---hcCCCEEEEEeccc
Confidence 344455555554 46899999999743
No 205
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=29.96 E-value=2e+02 Score=23.88 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=41.4
Q ss_pred ceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 151 ~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++.++-++=-..++..+.+...|++-|+.-+. + . + .-...|...++ +|.+.|++||.+
T Consensus 210 ~~V~il~~~pG~~~~~l~~~~~~g~~GiVl~~~-G-~----G-n~p~~~~~~l~-~a~~~gi~VV~~ 268 (323)
T cd00411 210 PKVGILYLYPGISAEAVRAFLRAGYKGIVLAGY-G-A----G-NVPTDLIDELE-EAAERGVVVVNS 268 (323)
T ss_pred CCEEEEEECCCCCHHHHHHHHhCCCCEEEEEeE-C-C----C-CCCHHHHHHHH-HHHHCCCEEEEe
Confidence 478888888878888888888888887776553 1 1 1 12235666664 788999999974
No 206
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=29.89 E-value=99 Score=24.30 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+..|++.....+. ..+.+..+++ .+|+++
T Consensus 191 ~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~g~i~ 233 (255)
T PRK11300 191 ELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV-NQGTPL 233 (255)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCeEE
Confidence 34566777766656776665544332 2344566777 478764
No 207
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.60 E-value=1.8e+02 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.0
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCC
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~ 184 (217)
+.+.+-+..++-.+.+...|+|.+++-|+.
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 567888888999999999999999998875
No 208
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=29.48 E-value=2.9e+02 Score=22.29 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
...+.+.++.|.++++|+|...=....... ..+..+.+.+.+++++.++.+++..
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~--------------~~~~~~~~ai~~a~~~~GvlvVaAA 130 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDIGYLNEPF--------------FQDGPIAQAVDEVVASPGVLYFSSA 130 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCCCc--------------ccCCHHHHHHHHHHHcCCcEEEEeC
Confidence 566778888888999999987643221100 0112345666666665588887753
No 209
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=29.47 E-value=31 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=21.8
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCc
Q 027914 14 LQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL 49 (217)
Q Consensus 14 vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~ 49 (217)
.|++...|.+..-+.+.+-++.+.+.|+|+|..|..
T Consensus 60 ~QF~~~eD~~~YPR~~e~D~~ll~~~gvD~vF~Ps~ 95 (280)
T PF02569_consen 60 TQFGPNEDFDKYPRTLERDLELLEKAGVDAVFAPSV 95 (280)
T ss_dssp GGSSTTSHTTTS---HHHHHHHHHHTT-SEEE---H
T ss_pred ccCCCcchhhhCCCChHHHHHHHhccCCCEEEcCCC
Confidence 477776676666666667777777889999999964
No 210
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=29.41 E-value=2.1e+02 Score=20.32 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEec
Q 027914 21 DVSTNLATAERLVRAAHGKGANIILIQ 47 (217)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (217)
.+......+.+..++..+.++.+|-..
T Consensus 45 ~C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 45 GCTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred chHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 355556666666666666777777664
No 211
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.37 E-value=97 Score=25.10 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+.+|+......+. ..+.+..+++ .+|+++
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l-~~G~i~ 224 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVM-NKGKCE 224 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45667777777667777665544332 2445677777 478764
No 212
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.37 E-value=94 Score=23.83 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++++..+++....... ..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l-~~G~i~ 211 (220)
T cd03265 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII-DHGRII 211 (220)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCCEEE
Confidence 34566777777656666554433322 2345666777 478764
No 213
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=29.31 E-value=79 Score=26.34 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=38.5
Q ss_pred CCCCcceEEEEEeccC--CCCHHHHHHHHHHHHHHHHhCCCcEEEecCccc
Q 027914 3 KGKRREVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (217)
Q Consensus 3 ~~~~~~~~ia~vQ~~~--~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (217)
+.++++.|+-.+|-.. ...+.-.+..|.+.++..++.++.++||-..+.
T Consensus 160 ~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY 210 (416)
T COG4100 160 TAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY 210 (416)
T ss_pred HhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 4456788999999877 334566788888888888889999999988654
No 214
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=29.26 E-value=97 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 205 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM-DDGRIV 205 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 44577777777656666554433222 2445667777 478764
No 215
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=29.15 E-value=1.4e+02 Score=29.04 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+.+.++.++|-.++||||...+.- +. -.++..-...+|++.++.|+-
T Consensus 501 ~~~~~~~l~~g~~~~ifPeGt~~~~--~~-------------~~~~~~g~~~~a~~~~~~i~p 548 (1146)
T PRK08633 501 LEFIRKALDDGEVVCIFPEGAITRN--GQ-------------LNEFKRGFELIVKGTDVPIIP 548 (1146)
T ss_pred HHHHHHHHhCCCEEEEECCcCCCCC--CC-------------ccchhHHHHHHHHHCCCCEEE
Confidence 3444455667889999999865411 11 024567788889998877643
No 216
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=29.06 E-value=1.1e+02 Score=20.02 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=27.8
Q ss_pred hHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 164 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
-+..+.+....+.+++...+.. ......+....+.++++|++.
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~----------~~~~~~~l~~~c~~~~Ip~~~ 63 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCS----------PDSIKKHLPALCEEKNIPYVF 63 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSS----------SGHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHcCCCcEEEEcCCCC----------hhhhcccchhheeccceeEEE
Confidence 3566667666788888888743 222333455666688888875
No 217
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=28.86 E-value=93 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.++.++.++++++-....+. -.+.+.+++++ +|++..
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~-~G~i~~ 217 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN-KGKIMQ 217 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEE
Confidence 45677777877778877776554433 24456777774 787653
No 218
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=28.81 E-value=2.3e+02 Score=20.65 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHhC-CCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeee
Q 027914 33 VRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (217)
Q Consensus 33 i~~a~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (217)
+.++.++ |-.+++|||...+... + ....+......+|++.++.|+--...
T Consensus 93 ~~~~l~~~g~~v~ifPeG~~~~~~-~-------------~~~~~~~g~~~la~~~~~~IvPv~i~ 143 (187)
T cd06551 93 VARLLSKPGSVVWIFPEGTRTRRD-K-------------RPLQFKPGVAHLAEKAGVPIVPVALR 143 (187)
T ss_pred HHHHHhcCCcEEEEeCCcccCCCC-C-------------CcccccchHHHHHHHcCCcEEEEEEe
Confidence 3344455 8899999998653211 0 01234566778888888887654443
No 219
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=28.67 E-value=2.7e+02 Score=22.04 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCc
Q 027914 25 NLATAERLVRAAHGKGANIILIQEL 49 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~ 49 (217)
....+.+.++.|.++|+|+|-++-.
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g 111 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWT 111 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeee
Confidence 4567889999999999999999853
No 220
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.65 E-value=57 Score=24.74 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++ +..+++.....+. ..+.+..++++ +|++
T Consensus 164 ~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 204 (205)
T cd03226 164 RVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLA-NGAI 204 (205)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 345666666544 5555554433221 23445556663 5653
No 221
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=28.34 E-value=97 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++.+..|++.....+. ..+.+..++++ +|++
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~-~G~i 232 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID-KGRL 232 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe-CCEE
Confidence 34566677766656666665443332 23444556663 6765
No 222
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.23 E-value=1.8e+02 Score=23.47 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhCCCcEE-EecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 25 NLATAERLVRAAHGKGANII-LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlv-v~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+.+...+..+.|.+.|+|-+ +.|-+... . +.....+.+++++...++.|++
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~----~-------------s~~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFK----P-------------SQEELIDYFRAIADATDLPIII 132 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSS----C-------------CHHHHHHHHHHHHHHSSSEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEecccccc----c-------------hhhHHHHHHHHHHhhcCCCEEE
Confidence 46666677777888899954 45432221 1 1135678889999888888865
No 223
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=28.22 E-value=1.2e+02 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=31.6
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
.+|.||+..+=-+.-..-+.+.|...||++.+..+|
T Consensus 43 l~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n 78 (476)
T PTZ00075 43 LKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCN 78 (476)
T ss_pred CCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCC
Confidence 378999988888888888999999999999988886
No 224
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=28.21 E-value=1.8e+02 Score=23.38 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCC--CCh-HHHHHHHHHHHcCcEEeeeeeee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYK--DHP-TILKMQELAKELGVVMPVSFFEE 97 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~a~~~~i~i~~g~~~~ 97 (217)
..|+..|. +.|..-|++-|++|.-...+|.+...+.... .++..+ ... ....+.++.++.|.++++...+.
T Consensus 120 P~NlGaIi---RtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~G-a~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~ 193 (260)
T COG0566 120 PHNLGAII---RTADAFGVDGVILPKRRADPLNPKVIRASAG-AAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDG 193 (260)
T ss_pred CcchhhHH---hhHHHhCCCEEEECCCccCCccceeEEecCC-hheeceeEEEeccHHHHHHHHHHcCeEEEEECCCC
Confidence 34666554 4455669999999998666665433211100 000000 011 46678888888999988876544
No 225
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=28.16 E-value=1.6e+02 Score=18.53 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCcEEEecCcc-cCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 30 ERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
...++.+.+ +.+.|++..+. +..... .....+.+......-..+.+.|...|+++|+.+..
T Consensus 14 ~~iv~~~~~-~~~~Ivie~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~yka~~~Gi~v~~ 75 (82)
T TIGR01766 14 KQIVEYAKE-NNGTIVLEDLKNIKEMVD-KKSKYLRRKLHQWSFRKLISKIKYKAEEYGIEVIE 75 (82)
T ss_pred HHHHHHHHH-cCCEEEECCccchhhhcc-hhhHHHHHHHHhhhHHHHHHHHHHHHHHcCCeEEE
Confidence 445556666 67999998876 332211 00011111111122256788999999999998754
No 226
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=28.15 E-value=1.1e+02 Score=23.98 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+..+++.....+. ..+....+++ .+|+++
T Consensus 186 ~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l-~~G~i~ 228 (253)
T TIGR02323 186 RLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVM-QQGRVV 228 (253)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 34566677766656776665443322 1234556666 477664
No 227
>PRK14014 putative acyltransferase; Provisional
Probab=28.12 E-value=74 Score=26.20 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCccc
Q 027914 26 LATAERLVRAAHGKGANIILIQELFE 51 (217)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (217)
.+.+.+..+...+.+..+++|||..-
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccee
Confidence 44445555555556788999999743
No 228
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.86 E-value=1.3e+02 Score=23.42 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++...... -..+.+..++++ +|+++
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~-~G~i~ 215 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEIV 215 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE-CCEEE
Confidence 4456677777665666555443332 234456667774 78764
No 229
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=27.81 E-value=2.6e+02 Score=22.02 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
..+.++..++.+.|.++++.--.++. +.+..+.+.+.+++.+..+.++.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~~s~gAla-------------------d~e~~~~l~~aA~~~g~~l~i~s 96 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLIMSVGALA-------------------DRELRERLREVARSSGRKVYIPS 96 (229)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcccC-------------------CHHHHHHHHHHHHhcCCEEEECh
Confidence 44567777777889999993222221 12456889999999998887763
No 230
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=27.79 E-value=1.1e+02 Score=24.45 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGS 114 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~ 114 (217)
|.-.+++++++=|-.. |..+. ......+.+.+++++.+..+++.....+ -..+.+.++++ .+|+
T Consensus 157 al~~~p~llllDEPt~-gLD~~-------------~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l-~~G~ 221 (265)
T PRK10253 157 VLAQETAIMLLDEPTT-WLDIS-------------HQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIAL-REGK 221 (265)
T ss_pred HHhcCCCEEEEeCccc-cCCHH-------------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCE
Confidence 4445788888877321 11110 0124557777777665666666544433 22455566777 4776
Q ss_pred ee
Q 027914 115 DL 116 (217)
Q Consensus 115 ~~ 116 (217)
++
T Consensus 222 i~ 223 (265)
T PRK10253 222 IV 223 (265)
T ss_pred EE
Confidence 54
No 231
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=27.72 E-value=1e+02 Score=25.56 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.++.++.+.++++.....+. ..+.+..+++ .+|++..
T Consensus 138 ~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl-~~G~i~~ 181 (325)
T TIGR01187 138 QMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM-RKGKIAQ 181 (325)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEEE
Confidence 45577777777767777665544332 2344566777 4787653
No 232
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=2e+02 Score=22.73 Aligned_cols=43 Identities=26% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHHHHhCC-CcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 33 VRAAHGKG-ANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 33 i~~a~~~~-~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
.+.|.+++ +|+|..||..=.... .-..+.++|.+.++.|-+++
T Consensus 90 ~R~Av~~~rVDil~~p~~~r~~~g-------------------ldh~~a~laa~~~valeisl 133 (229)
T COG1603 90 NRAAVENKRVDILSHPETGRKDPG-------------------LDHVLARLAAEKGVALEISL 133 (229)
T ss_pred HHHHHhccCccEEEcccccCCCcc-------------------ccHHHHHHHHhcCceEEEeh
Confidence 44455555 999999996432111 11356777888888876654
No 233
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=27.58 E-value=2.3e+02 Score=20.18 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=38.0
Q ss_pred eEecCCceEEEEEecCCc-----------------chHHHHHHHHcCCcEEEe--ccCCCCCCCCCCCCCHHHHHHHhhh
Q 027914 145 VFQTKFAKIGVAICWDQW-----------------FPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQG 205 (217)
Q Consensus 145 ~~~~~~~~ig~~IC~d~~-----------------~p~~~~~~~~~g~dlil~--~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (217)
-+|++--|+|++||.... ..++.+.....+++.+++ |.+. +.... .....-..+.+.
T Consensus 5 ~lD~G~kriGiAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~--~~~~~v~~f~~~ 80 (135)
T PF03652_consen 5 GLDYGTKRIGIAVSDPLGIIASPLETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNM--DGSES--EQARRVRKFAEE 80 (135)
T ss_dssp EEEECSSEEEEEEEETTTSSEEEEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC---CCHHHHHHHHHH
T ss_pred EEEeCCCeEEEEEecCCCCeEeeeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCccc--CCCcc--HHHHHHHHHHHH
Confidence 456667788888887764 224555556778888885 5543 22111 234444444444
Q ss_pred hhccc-cEEEEe
Q 027914 206 HAGAN-VVSYTD 216 (217)
Q Consensus 206 rA~en-~~~vv~ 216 (217)
-+... +++|..
T Consensus 81 L~~~~~~ipV~~ 92 (135)
T PF03652_consen 81 LKKRFPGIPVIL 92 (135)
T ss_dssp HHHHH-TSEEEE
T ss_pred HHHhcCCCcEEE
Confidence 44444 556553
No 234
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=27.44 E-value=60 Score=22.70 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=13.7
Q ss_pred EEEEECCCCCeeeeee
Q 027914 105 SIAIIDADGSDLGLYR 120 (217)
Q Consensus 105 s~~~i~~~G~~~~~y~ 120 (217)
+.+++|++|.+...|+
T Consensus 126 ~~~lid~~G~i~~~~~ 141 (142)
T cd02968 126 AIYLVDPDGKLVRYYG 141 (142)
T ss_pred eEEEECCCCCEEEeec
Confidence 5799999999987775
No 235
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=27.39 E-value=1.1e+02 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.++.++.++++++-...... -.+.+..+++ .+|+++.
T Consensus 172 ~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl-~~G~i~~ 215 (356)
T PRK11650 172 QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM-NGGVAEQ 215 (356)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCCEEEE
Confidence 45677777877778887776544332 2344566777 4787643
No 236
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=27.26 E-value=1.2e+02 Score=23.53 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++.....+. ..+-+..++++ +|++.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~g~i~ 209 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA-DGRIA 209 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE-CCEEE
Confidence 45677777777666666665443332 23345566674 77654
No 237
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=27.19 E-value=86 Score=24.01 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=11.4
Q ss_pred CCCcEEEecCcccC
Q 027914 39 KGANIILIQELFEG 52 (217)
Q Consensus 39 ~~~dlvv~PE~~~~ 52 (217)
+|-.|++|||...+
T Consensus 96 ~g~~v~iFPEGtrs 109 (211)
T cd07991 96 NWPPILIFPEGTTT 109 (211)
T ss_pred CCCeEEEecCcccc
Confidence 46899999998664
No 238
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.12 E-value=2.8e+02 Score=21.07 Aligned_cols=21 Identities=10% Similarity=0.282 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCcEEeeeeee
Q 027914 76 ILKMQELAKELGVVMPVSFFE 96 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~ 96 (217)
.+++.+.|.+.++........
T Consensus 103 ~~~~e~~~~~~gl~~~~PLW~ 123 (194)
T cd01994 103 RTRVERVCERLGLEPLAPLWG 123 (194)
T ss_pred HHHHHHHHHHcCCEEEecccC
Confidence 455555566656555555443
No 239
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.11 E-value=1.7e+02 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEe-cCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 24 TNLATAERLVRAAHGKGANIILI-QELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~-PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
.+++...+..+.|.+.|+|-++. |-.... . ......+.+++++...++.+++
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~----~-------------~~~~i~~~~~~ia~~~~~pv~l 132 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNK----P-------------TQEGLYQHFKAIAEATDLPIIL 132 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCC----C-------------CHHHHHHHHHHHHhcCCCCEEE
Confidence 35777788888888889995544 543221 1 0134667788888776666644
No 240
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.08 E-value=1.2e+02 Score=24.55 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+..|++.....+. ..+.+..+++ .+|+++
T Consensus 188 ~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l-~~G~i~ 230 (289)
T PRK13645 188 DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVM-HEGKVI 230 (289)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566677776656666555433322 2445566777 477654
No 241
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=27.01 E-value=89 Score=25.25 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=18.3
Q ss_pred CceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 150 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 150 ~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
+-+|.++.|||..+..+ +-..|+|+|++.-.
T Consensus 15 g~ki~~lTaYD~~~A~~---~d~agvD~iLVGDS 45 (261)
T PF02548_consen 15 GEKIVMLTAYDYPSARI---ADEAGVDIILVGDS 45 (261)
T ss_dssp T--EEEEE--SHHHHHH---HHHTT-SEEEE-TT
T ss_pred CCcEEEEecccHHHHHH---HHHcCCCEEEeCCc
Confidence 56899999999755444 44579999998544
No 242
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=26.99 E-value=1e+02 Score=26.34 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+.+|++-....+. -++.+.++++ .+|+++
T Consensus 202 ~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl-~~G~iv 244 (382)
T TIGR03415 202 QLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM-EGGRII 244 (382)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677777777767777665544332 2445566777 477664
No 243
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=26.99 E-value=1.2e+02 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 75 TILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 75 ~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
..+.+.+++++.+..+++.....+. ..+.+..+++ .+|+++
T Consensus 190 l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l-~~g~i~ 231 (258)
T PRK11701 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM-KQGRVV 231 (258)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 4566666666656666665443332 2355667777 478764
No 244
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.95 E-value=2.1e+02 Score=23.74 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=41.6
Q ss_pred ceEEEEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 151 ~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++.++-++--..+++.+.+...|++=|+.-+. + . + .-...|...+ .++.+.|++||.+
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~-G-~----G-n~p~~~~~~l-~~a~~~gipVV~~ 270 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGT-G-A----G-NVPPDLLEAL-KEALERGIPVVRT 270 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEee-C-C----C-CCCHHHHHHH-HHHHHCCCEEEEe
Confidence 579999899988999988888888887776554 1 1 1 1223455555 4778889999874
No 245
>KOG1505 consensus Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases [Lipid transport and metabolism]
Probab=26.81 E-value=89 Score=26.38 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecCcc
Q 027914 24 TNLATAERLVRAAHGKGANIILIQELF 50 (217)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~ 50 (217)
+.+.+..+....+ ...-.|++|||..
T Consensus 136 ~~l~~~~k~l~~~-~~~~wLlLFPEGT 161 (346)
T KOG1505|consen 136 KTLISLLKHLKDS-PDPYWLLLFPEGT 161 (346)
T ss_pred HHHHHHHHHhccC-CCceEEEEecCCC
Confidence 4444444444443 2346899999976
No 246
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=26.75 E-value=1.1e+02 Score=24.51 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..++++ +|+++
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 45567777777666666554433322 23456677774 77664
No 247
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=26.73 E-value=1.9e+02 Score=19.04 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~ 118 (217)
+-++.+.+.+++.++.+..+-.......-...+.+.||+|..+..
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 114 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEF 114 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEE
Confidence 345666666777788765442111111123367899999987644
No 248
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.70 E-value=1.3e+02 Score=23.44 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+.+|++.....+. ..+.+..++++ +|+++
T Consensus 169 ~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~-~G~i~ 211 (241)
T PRK14250 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN-KGILV 211 (241)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe-CCEEE
Confidence 34566777766556666655443332 23456677774 77654
No 249
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.56 E-value=1.2e+02 Score=24.49 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l-~~G~i~ 221 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM-KEGRVI 221 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 45577788877767777665443332 2345566777 478764
No 250
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=26.49 E-value=1.1e+02 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGL 118 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~~ 118 (217)
.+.+.+.++.++.++++++-....+. -.+.+..++++ +|+++..
T Consensus 172 ~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~-~G~i~~~ 216 (353)
T TIGR03265 172 HLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN-HGVIEQV 216 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE-CCEEEEE
Confidence 45677777777778888776655443 24455667774 7876543
No 251
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=26.46 E-value=1.3e+02 Score=23.82 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEEC
Q 027914 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIID 110 (217)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~ 110 (217)
-.|.+|...++++|+-=|- -+.+ +........+.+.+++++.+.++++-..+..=-.+.+..+.+
T Consensus 151 VAIARAL~~~P~iilADEP------TgnL--------D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l- 215 (226)
T COG1136 151 VAIARALINNPKIILADEP------TGNL--------DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIEL- 215 (226)
T ss_pred HHHHHHHhcCCCeEEeeCc------cccC--------ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEE-
Confidence 3556666678899988882 1211 111124567889999999887766654433222233344444
Q ss_pred CCCC
Q 027914 111 ADGS 114 (217)
Q Consensus 111 ~~G~ 114 (217)
.+|+
T Consensus 216 ~dG~ 219 (226)
T COG1136 216 KDGK 219 (226)
T ss_pred eCCe
Confidence 4665
No 252
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=26.43 E-value=88 Score=23.88 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++ +..+++....... ..+.+..+++ .+|++.
T Consensus 174 ~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l-~~G~i~ 215 (218)
T cd03266 174 ALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVL-HRGRVV 215 (218)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEE-ECCEEe
Confidence 345666666543 5555554433221 2334455666 467653
No 253
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.36 E-value=1.2e+02 Score=24.59 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.++.++.+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l-~~G~i~ 225 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM-KEGSIV 225 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566677766667777666544332 2344667777 478765
No 254
>PLN02494 adenosylhomocysteinase
Probab=26.32 E-value=1.5e+02 Score=26.29 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=31.4
Q ss_pred cCCceEEEEEecCCcchHHHHHHHHcCCcEEEeccC
Q 027914 148 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 148 ~~~~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~ 183 (217)
.+|.||+..+=-+.-..-+.+.|...||++.+..+|
T Consensus 44 l~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~N 79 (477)
T PLN02494 44 FKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCN 79 (477)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCC
Confidence 378899988888887888999999999999988887
No 255
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=26.13 E-value=1.2e+02 Score=25.75 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc-CcEEeeeeeeecC-CceEEEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSFFEEAN-NAHYNSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~g~~~~~~-~~~~Ns~~~i~~~G 113 (217)
|...+++++++=|-.. +. + +.....+.+.+.++.++. ++++++.....+. -.+.+..+++ .+|
T Consensus 151 AL~~~P~llLLDEP~s-~L---D----------~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl-~~G 215 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLS-AL---D----------ANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIM-KDG 215 (362)
T ss_pred HHhcCCCEEEEcCccc-cC---C----------HHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEE-ECC
Confidence 4445778888888321 11 0 001134567777888776 7777666544432 2444566777 477
Q ss_pred Ceee
Q 027914 114 SDLG 117 (217)
Q Consensus 114 ~~~~ 117 (217)
+++.
T Consensus 216 ~i~~ 219 (362)
T TIGR03258 216 RLAA 219 (362)
T ss_pred EEEE
Confidence 7643
No 256
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=25.89 E-value=98 Score=24.04 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++ +.++++.....+ -..+.+..++++ +|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 216 (237)
T PRK11614 175 QIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLE-NGHVV 216 (237)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEe-CCEEE
Confidence 345666666654 555555443322 234556777774 77654
No 257
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=25.77 E-value=1.2e+02 Score=23.11 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCC-hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDH-PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (217)
+..|...+++++++-|-.-. ..+. ... .+.+.+.++.++.+..+++.....+.-......+.+..
T Consensus 132 la~al~~~p~illlDEP~~~-LD~~-------------~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 132 LAETFGSNCGILALDEPTTN-LDEE-------------NIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHhccCCCEEEEcCCccc-cCHH-------------HHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 33444568999999994321 1100 012 34566666665534444443322221123445556655
Q ss_pred CC
Q 027914 112 DG 113 (217)
Q Consensus 112 ~G 113 (217)
+|
T Consensus 198 ~~ 199 (204)
T cd03240 198 DG 199 (204)
T ss_pred CC
Confidence 55
No 258
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=25.74 E-value=1.1e+02 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.|.++.++.++++++-...... -.+-+.+++++ +|++..
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~-~G~i~~ 225 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR-DGRIEQ 225 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEE
Confidence 45677888888778877765544432 23455667773 777653
No 259
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=25.71 E-value=1.4e+02 Score=22.06 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA 111 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~ 111 (217)
+..|...+++++++=|-.-. .... ....+.+.+.++.++.+..+++.....+. ....+..++++
T Consensus 108 laral~~~p~llllDEP~~~-LD~~-------------~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~- 172 (180)
T cd03214 108 LARALAQEPPILLLDEPTSH-LDIA-------------HQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLK- 172 (180)
T ss_pred HHHHHhcCCCEEEEeCCccC-CCHH-------------HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-
Confidence 44455668999999994321 1100 01234566666666545565554433222 24455666774
Q ss_pred CCCee
Q 027914 112 DGSDL 116 (217)
Q Consensus 112 ~G~~~ 116 (217)
+|++.
T Consensus 173 ~g~i~ 177 (180)
T cd03214 173 DGRIV 177 (180)
T ss_pred CCEEE
Confidence 67653
No 260
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=25.70 E-value=1.1e+02 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++++ .+.++++.....+. ..+.+..+++ .+|++.
T Consensus 170 ~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 211 (222)
T cd03224 170 EIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVL-ERGRVV 211 (222)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEe-eCCeEE
Confidence 44566666655 45566555443332 3455667777 478764
No 261
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=25.66 E-value=1.2e+02 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+..+++....... ..+.+..++++ +|+++
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~-~G~i~ 213 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE-EGKIG 213 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 34566777766666666665443322 23445667774 67664
No 262
>PLN02591 tryptophan synthase
Probab=25.52 E-value=2.5e+02 Score=22.45 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=27.7
Q ss_pred EEEEEecCCcchHHHHHHHHcCCcEEEeccCC
Q 027914 153 IGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 153 ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~~ 184 (217)
+=+++.+.+..++-.+.+...|+|-+++-|..
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 34567899999999999999999999999876
No 263
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=25.46 E-value=2.7e+02 Score=24.50 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHhCCCcEEEecCc-ccCcccCccchhhHHhhc--CCCCCChHHHHHHHHHHHcCcEE
Q 027914 32 LVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRA--KPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~-~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
.|.+|.+.|++++++=|= +.+.+.-.+.+ +.... +..+-.++.+.++++-+++++..
T Consensus 332 nI~EAlE~Ga~~LLiDEDtsATNfmiRD~r--Mq~Lv~k~kEPITPfidrvr~l~~~~GvSt 391 (448)
T PF09818_consen 332 NIMEALEAGARLLLIDEDTSATNFMIRDER--MQALVSKEKEPITPFIDRVRSLYEKLGVST 391 (448)
T ss_pred HHHHHHHcCCCEEEEcCcccchheeehhHH--HHHhhccCCCCcchHHHHHHHHHHHcCceE
Confidence 344567889999999996 44555544432 12222 22233578999999999988654
No 264
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.24 E-value=1.3e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++.....+. ..+.+..+++ .+|++.
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l-~~G~i~ 240 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM-KDGRLV 240 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 45566777776656666665443322 2344566677 477664
No 265
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.23 E-value=79 Score=27.24 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.|+++++ .+.+|++...+.+. .++.+..++++ +|+++
T Consensus 177 ~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~-~G~iv 218 (402)
T PRK09536 177 RTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLA-DGRVR 218 (402)
T ss_pred HHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEE-CCEEE
Confidence 45677788876 46777666544332 25566777774 77654
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=25.15 E-value=1.1e+02 Score=24.13 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++.....+. ..+.+..+++ .+|++.
T Consensus 178 ~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l-~~G~i~ 220 (254)
T PRK10418 178 RILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM-SHGRIV 220 (254)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 44577777777666666665433322 2344566677 477654
No 267
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=25.08 E-value=1.2e+02 Score=23.41 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++ +..+++.....+ -..+.+..+++ .+|++.
T Consensus 171 ~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 212 (232)
T cd03218 171 DIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYII-YEGKVL 212 (232)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCeEE
Confidence 345566666653 555555443322 23445566777 478764
No 268
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.00 E-value=4.1e+02 Score=22.16 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
..|++.+.+.++...+.+..+.=++--.+|.........++...+ .+.++.+.++++++++.+.+
T Consensus 48 ~~Nl~~l~~~L~~n~~~~I~f~RisS~l~P~ash~~~~~~~~~~~-----~~~l~~iG~~a~~~~iRLS~ 112 (312)
T TIGR00629 48 KANLRDTMKTLHWNIGHGIPFYRFSSSIFPFASHPDVGYDLVTFA-----QKELREIGELAKTHQHRLTF 112 (312)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEecCccccCcCcCchhhhhHHHHH-----HHHHHHHHHHHHHcCeEEEE
Confidence 458888888888888888888766644444333222111222211 35678899999999998876
No 269
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=24.85 E-value=1.3e+02 Score=25.57 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.++.++.+.++++-....+. ..+.+..++++ +|++..
T Consensus 171 ~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~-~G~i~~ 214 (369)
T PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD-AGRVAQ 214 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEEE
Confidence 44567777777767776665444332 24455667774 787653
No 270
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=24.83 E-value=3.3e+02 Score=21.53 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEe
Q 027914 22 VSTNLATAERLVRAAHGKGANIILI 46 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~ 46 (217)
.+..++.+.+.++.|.+-|++.|++
T Consensus 79 r~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 79 VEKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3456778888999999999998886
No 271
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.79 E-value=86 Score=23.92 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCC
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~ 114 (217)
.+.+.+.+++++ +..|++.....+. ..+.+..++++ +|+
T Consensus 176 ~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~-~G~ 215 (216)
T TIGR00960 176 DIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLS-RGR 215 (216)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe-CCc
Confidence 345666666544 5555554333221 23445566663 554
No 272
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=24.77 E-value=2e+02 Score=19.08 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~ 118 (217)
+-++.+.+..++.|+.+..+ +.........+.++.||+|..+..
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~DPdG~~ve~ 115 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV-EAGEEPGQGRALRVEDPLGFPIEF 115 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc-cCCcCCCCccEEEEECCCCCEEEE
Confidence 34566666666778776433 221111222477899999976644
No 273
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=52 Score=25.19 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=30.9
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhh
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQ 204 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (217)
.-+|+|+++...+..+...|-|.+-..-. -+||. ...+-.....
T Consensus 91 C~~Cfd~Rle~tA~~A~e~G~d~ftttL~--iSp~K----n~~qin~~G~ 134 (204)
T COG1636 91 CTMCFDMRLEKTAKKAKELGFDVFTTTLL--ISPKK----NMNQINEIGE 134 (204)
T ss_pred hHhHHHHHHHHHHHHHHHcCCchhhhhee--cCccc----CHHHHHHHhH
Confidence 35699999999999999999998765443 36763 3444444443
No 274
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=24.74 E-value=99 Score=23.95 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.++++ .+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 181 ~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l-~~G~i~ 222 (236)
T cd03219 181 ELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVL-DQGRVI 222 (236)
T ss_pred HHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEE-eCCEEE
Confidence 34566776665 45555554433322 2445667777 478664
No 275
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=24.72 E-value=2.5e+02 Score=19.57 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=31.8
Q ss_pred cceEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCc
Q 027914 7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (217)
Q Consensus 7 ~~~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g 53 (217)
...+|+.+...- -+-...+...++|..+-+++++.|++|+-.++.
T Consensus 4 ~~~~v~~~~s~~--~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~ 48 (113)
T PF13788_consen 4 NGIRVAEVSSDE--PLISDEQDALDLIGTAYEHGADRIILPKEALSE 48 (113)
T ss_pred CCeEEEEEeCCC--CeecchhHHHHHHHHHHHcCCCEEEEEhHHCCH
Confidence 456777766543 223345666778888888999999999988864
No 276
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=24.56 E-value=1.4e+02 Score=25.14 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.+++++.+.++++.....+. ..+.+..+++ .+|+++.
T Consensus 169 ~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l-~~G~i~~ 212 (354)
T TIGR02142 169 EILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL-EDGRVAA 212 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-eCCEEEE
Confidence 45677788877767766665443332 2344566677 4777653
No 277
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.47 E-value=1.2e+02 Score=22.34 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEE
Q 027914 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAII 109 (217)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i 109 (217)
+-.+..|...+++++++=|-.. +..+. ......+.+.++.++ +..+++...+.+.-...+..+++
T Consensus 104 rv~la~al~~~p~~lllDEPt~-~LD~~-------------~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNS-HLDVE-------------GERALNQAIAALKAA-GATRIVIAHRPETLASADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCcc-ccCHH-------------HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEE
Confidence 3345556667999999999332 11100 012345666666553 55555543332211234455566
Q ss_pred CCCCC
Q 027914 110 DADGS 114 (217)
Q Consensus 110 ~~~G~ 114 (217)
+ +|+
T Consensus 169 ~-~G~ 172 (173)
T cd03246 169 E-DGR 172 (173)
T ss_pred E-CCC
Confidence 3 553
No 278
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.44 E-value=2.5e+02 Score=22.58 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCCC
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAIG 185 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~~ 185 (217)
+++.+-+..++-.+.+... +|-+++-|.+.
T Consensus 203 v~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 203 VAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred EEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 4668888899988888764 99999988753
No 279
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=24.38 E-value=1.4e+02 Score=23.80 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++....... ..+.+..++++ +|+++
T Consensus 185 ~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~-~G~i~ 227 (265)
T PRK10575 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR-GGEMI 227 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCeEE
Confidence 34577777777656666555433321 23445666774 77764
No 280
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.30 E-value=63 Score=22.06 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=29.7
Q ss_pred chHHHHHHHH-cCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEE
Q 027914 163 FPEAARAMVL-QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYT 215 (217)
Q Consensus 163 ~p~~~~~~~~-~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv 215 (217)
.|++...+.. ..+|++++... +.... ....--..+|-.|+++++|++
T Consensus 56 ~~~i~~~i~~~g~idlVIn~~~-~~~~~-----~~~~dg~~iRR~A~~~~Ip~~ 103 (112)
T cd00532 56 EPTVDAAIAEKGKFDVVINLRD-PRRDR-----CTDEDGTALLRLARLYKIPVT 103 (112)
T ss_pred CcHHHHHHhCCCCEEEEEEcCC-CCccc-----ccCCChHHHHHHHHHcCCCEE
Confidence 4777777777 77999998664 21100 011112566778889999886
No 281
>PRK10908 cell division protein FtsE; Provisional
Probab=24.25 E-value=91 Score=23.94 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++ +..+++.....+. ..+.+..++++ +|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 175 GILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEc
Confidence 345666666554 5555554333221 23344566674 67654
No 282
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=24.20 E-value=1.2e+02 Score=24.27 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++.+..+++.....+. ..+.+..++++ +|++.
T Consensus 189 ~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~-~G~i~ 231 (268)
T PRK10419 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD-NGQIV 231 (268)
T ss_pred HHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE-CCEEe
Confidence 35677777777667666665444332 23456667774 67654
No 283
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=24.16 E-value=1.6e+02 Score=23.47 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
...+.+.++.++.+.+|++.....+. ..+.+..++++ +|+++.
T Consensus 188 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~-~G~i~~ 231 (265)
T TIGR02769 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQIVE 231 (265)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe-CCEEEE
Confidence 35677777777656666665443322 23455667774 777643
No 284
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=24.13 E-value=1.5e+02 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++...... -..+.+..+++ .+|+++
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l-~~G~i~ 223 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV-ADKKIV 223 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE-ECCEEE
Confidence 4557777777765666655544322 12344566677 477764
No 285
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=24.09 E-value=2.2e+02 Score=23.90 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecCccc----Cc------ccC-----ccchhhHHhhcCCCCCChHHHHHHHHHHHcC
Q 027914 23 STNLATAERLVRAAHGKGANIILIQELFE----GY------YFC-----QAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (217)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~----~g------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (217)
..+++..+++|+.|++.|+|-|=|.=+.. +. |.. +.-..+..+..+ ...+....|.+.|++.|
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLE--LSEEDHRELKEYCESKG 89 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhC--CCHHHHHHHHHHHHHhC
Confidence 44688899999999999999887764311 00 000 000112222222 22467899999999999
Q ss_pred cEEeeeeee
Q 027914 88 VVMPVSFFE 96 (217)
Q Consensus 88 i~i~~g~~~ 96 (217)
+..+..-.+
T Consensus 90 i~~~stpfd 98 (329)
T TIGR03569 90 IEFLSTPFD 98 (329)
T ss_pred CcEEEEeCC
Confidence 998776543
No 286
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.08 E-value=1.5e+02 Score=25.36 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=38.2
Q ss_pred EEecCCcchHHHHHHHHcCCcEEEeccCC-------------CCCCCCCCCCCHHHHHHHhh----hhhccccEEEEeC
Q 027914 156 AICWDQWFPEAARAMVLQGAEILFYPTAI-------------GSEPQDDGLDSRDHWRRVMQ----GHAGANVVSYTDC 217 (217)
Q Consensus 156 ~IC~d~~~p~~~~~~~~~g~dlil~~~~~-------------~~~~~~~~~~~~~~~~~~~~----~rA~en~~~vv~~ 217 (217)
++--|...++-.++++++ +.+|+|...= ......-+-.+.++|...++ -+|.|+|+|||.|
T Consensus 66 i~i~D~~n~~Sl~emak~-~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 66 ILIADSANEASLDEMAKQ-ARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred EEEecCCCHHHHHHHHhh-hEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 334477778888888765 9999976530 00011112345677775554 4688999999975
No 287
>PRK10200 putative racemase; Provisional
Probab=24.03 E-value=1.3e+02 Score=23.58 Aligned_cols=22 Identities=32% Similarity=0.182 Sum_probs=17.7
Q ss_pred hHHHHHHHHcCCcEEEeccCCC
Q 027914 164 PEAARAMVLQGAEILFYPTAIG 185 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~~~ 185 (217)
-+..+.|.+.|+|+|+.|+|..
T Consensus 65 ~~~~~~L~~~g~~~iviaCNTa 86 (230)
T PRK10200 65 AEAALGLQRAGAEGIVLCTNTM 86 (230)
T ss_pred HHHHHHHHHcCCCEEEECCchH
Confidence 3456778899999999999943
No 288
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.94 E-value=2e+02 Score=24.32 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcC
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (217)
...+.+++.+..+.+++.+.|+++-|= .++|+. .+....+-++|++.+
T Consensus 237 ~dYdv~kvle~aE~i~~a~idvlIaPv-~lPG~N-----------------D~E~~~iIe~A~~iG 284 (414)
T COG2100 237 KDYDVKKVLEVAEYIANAGIDVLIAPV-WLPGVN-----------------DDEMPKIIEWAREIG 284 (414)
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEeee-ecCCcC-----------------hHHHHHHHHHHHHhC
Confidence 356788888888888889999999995 556653 233466677887765
No 289
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=23.90 E-value=1.2e+02 Score=25.93 Aligned_cols=45 Identities=7% Similarity=0.081 Sum_probs=30.4
Q ss_pred cceEEEEEeccC--CCCHHHHHHHHHHHHHHHHhCCCcEEEecCccc
Q 027914 7 REVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (217)
Q Consensus 7 ~~~~ia~vQ~~~--~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (217)
++.|+..+|=.. .....-.++.|.+.++..++.++|++||=-.+.
T Consensus 153 ~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY 199 (403)
T PF06838_consen 153 PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY 199 (403)
T ss_dssp TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT
T ss_pred cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence 467899999887 345666788888888888888999999987654
No 290
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=23.90 E-value=1.1e+02 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.+++++ ..|++....... ..+.+..+++ .+|+++
T Consensus 179 ~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 219 (227)
T cd03260 179 KIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFL-LNGRLV 219 (227)
T ss_pred HHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEE-eCCEEE
Confidence 345666666654 444444333221 2455677777 477654
No 291
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.70 E-value=1.6e+02 Score=22.00 Aligned_cols=69 Identities=12% Similarity=0.258 Sum_probs=35.6
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC--CceEEEEEEEC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN--NAHYNSIAIID 110 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~--~~~~Ns~~~i~ 110 (217)
+..|...+++++++=|-... .... ....+.+.+.+++++ +..+++.....+. ....+..++++
T Consensus 119 la~al~~~p~vlllDEP~~~-LD~~-------------~~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~ 183 (192)
T cd03232 119 IGVELAAKPSILFLDEPTSG-LDSQ-------------AAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLK 183 (192)
T ss_pred HHHHHhcCCcEEEEeCCCcC-CCHH-------------HHHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEc
Confidence 34455568999999994321 1100 012345666766653 5555554433221 23345666774
Q ss_pred CCCCee
Q 027914 111 ADGSDL 116 (217)
Q Consensus 111 ~~G~~~ 116 (217)
.+|+++
T Consensus 184 ~~g~i~ 189 (192)
T cd03232 184 RGGKTV 189 (192)
T ss_pred CCCeEE
Confidence 337653
No 292
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=23.65 E-value=1e+02 Score=23.89 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++ +..|++.....+. ..+-+..++++ +|+++
T Consensus 180 ~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 221 (224)
T cd03220 180 KCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLE-KGKIR 221 (224)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 356677777665 5555554433322 23345666773 77653
No 293
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=23.58 E-value=1.1e+02 Score=24.08 Aligned_cols=69 Identities=12% Similarity=-0.014 Sum_probs=36.9
Q ss_pred HHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee-eecCCceEEEEEEECCC
Q 027914 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF-EEANNAHYNSIAIIDAD 112 (217)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~~~~~~Ns~~~i~~~ 112 (217)
.+|.-.+++++||-|-. +|.. . .. ...+.+.+. ..+.-|-.++++.. -++-..+....+++ .+
T Consensus 145 ARAlvh~P~i~vlDEP~-sGLD---i----~~------~r~~~dfi~-q~k~egr~viFSSH~m~EvealCDrvivl-h~ 208 (245)
T COG4555 145 ARALVHDPSILVLDEPT-SGLD---I----RT------RRKFHDFIK-QLKNEGRAVIFSSHIMQEVEALCDRVIVL-HK 208 (245)
T ss_pred HHHHhcCCCeEEEcCCC-CCcc---H----HH------HHHHHHHHH-HhhcCCcEEEEecccHHHHHHhhheEEEE-ec
Confidence 33445689999999933 2221 0 00 012233333 33333566666643 33334566777888 68
Q ss_pred CCeeee
Q 027914 113 GSDLGL 118 (217)
Q Consensus 113 G~~~~~ 118 (217)
|+++..
T Consensus 209 Gevv~~ 214 (245)
T COG4555 209 GEVVLE 214 (245)
T ss_pred CcEEEc
Confidence 887644
No 294
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=23.49 E-value=1.5e+02 Score=24.83 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.+.++.++.+.++++.....+. ..+.+.+++++ +|+++.
T Consensus 166 ~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~-~G~i~~ 209 (352)
T PRK11144 166 ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLE-QGKVKA 209 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEe-CCEEEE
Confidence 45677777877767766665443322 23445667774 777653
No 295
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.49 E-value=2e+02 Score=22.09 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.5
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (217)
..++|.+.|++++|-|=+ ...+.+.|+++++..+=|..
T Consensus 72 ~a~~a~~aGA~FivSP~~--------------------------~~~v~~~~~~~~i~~iPG~~ 109 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGF--------------------------DPEVIEYAREYGIPYIPGVM 109 (196)
T ss_dssp HHHHHHHHT-SEEEESS----------------------------HHHHHHHHHHTSEEEEEES
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCcccCCcC
Confidence 344456668888888852 26678899999999887754
No 296
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=23.43 E-value=1.6e+02 Score=22.86 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..+++....... ..+.+..++++ +|++.
T Consensus 168 ~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~-~g~i~ 210 (237)
T TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIE 210 (237)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE-CCEEE
Confidence 44566777766656666665443332 34445666774 77664
No 297
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.33 E-value=1.7e+02 Score=23.20 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECC-CCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDA-DGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~-~G~~~ 116 (217)
...+.+.+++++.+..+++.....+. ..+.+..++++. +|+++
T Consensus 166 ~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 166 QMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 34566666666556666554433322 244556667753 67654
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=23.31 E-value=2.4e+02 Score=24.79 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=34.7
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-Cc-eEEEEEEECCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NA-HYNSIAIIDADG 113 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~-~~Ns~~~i~~~G 113 (217)
|...+++++++=|-.- |..+. ....+.+.+.+++++.+..|++.....+. .. +.+..+++ .+|
T Consensus 415 al~~~p~lllLDEPt~-gLD~~-------------~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l-~~G 479 (490)
T PRK10938 415 ALVKHPTLLILDEPLQ-GLDPL-------------NRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV-PDG 479 (490)
T ss_pred HHhcCCCEEEEcCccc-cCCHH-------------HHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe-cCC
Confidence 4445778888888321 11110 11245677777777655544444333322 22 34667777 478
Q ss_pred Cee
Q 027914 114 SDL 116 (217)
Q Consensus 114 ~~~ 116 (217)
+++
T Consensus 480 ~i~ 482 (490)
T PRK10938 480 DIY 482 (490)
T ss_pred ceE
Confidence 753
No 299
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=23.30 E-value=1.2e+02 Score=23.66 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++ +..+++.....+. ..+.+..+++ .+|+++
T Consensus 174 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 215 (240)
T PRK09493 174 EVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFI-DKGRIA 215 (240)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 345666666544 5555554433322 2345566777 478765
No 300
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=23.24 E-value=3e+02 Score=22.36 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcC--cEEeeee
Q 027914 29 AERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG--VVMPVSF 94 (217)
Q Consensus 29 ~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--i~i~~g~ 94 (217)
+.++...+.+.|.|+++..=.++. +..+.+.+.+.|++++ ++|.-|.
T Consensus 75 v~e~~~~iL~~g~dlvv~SvGALa-------------------D~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 75 IAEHAEGCLTAGLDMIICSAGALA-------------------DDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHHhcCCCEEEEChhHhc-------------------CHHHHHHHHHHHHhCCCEEEEeChH
Confidence 334444445556677766554432 3467899999999976 4444444
No 301
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.16 E-value=3.9e+02 Score=21.59 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEE
Q 027914 31 RLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAII 109 (217)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i 109 (217)
-.+.+|...+++|+.+=|-. +|.. |+....+.+.++++-+..+.+++.=..+.+ --.+-..++++
T Consensus 154 vaLARAialdPell~~DEPt-sGLD-------------PI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 154 VALARAIALDPELLFLDEPT-SGLD-------------PISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred HHHHHHHhcCCCEEEecCCC-CCCC-------------cchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 34566677799999999932 2332 223356678888888888877655433322 12344455566
Q ss_pred CCCCCee
Q 027914 110 DADGSDL 116 (217)
Q Consensus 110 ~~~G~~~ 116 (217)
.+|+++
T Consensus 220 -~~gkv~ 225 (263)
T COG1127 220 -ADGKVI 225 (263)
T ss_pred -eCCEEE
Confidence 477665
No 302
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.15 E-value=1.7e+02 Score=22.75 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.++++....... ..+....+++ .+|+++
T Consensus 167 ~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l-~~G~i~ 209 (235)
T cd03299 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM-LNGKLI 209 (235)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566677766656776665543322 2233456666 477764
No 303
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=22.98 E-value=1e+02 Score=24.29 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 75 TILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 75 ~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
..+.+.++++. +..|++....... ..+.+..++++ +|+++
T Consensus 191 l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~-~G~i~ 231 (257)
T PRK10619 191 VLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH-QGKIE 231 (257)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 44556666543 6666555433322 23456677774 78765
No 304
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=22.94 E-value=1.9e+02 Score=23.75 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCcceEEEEEeccC-CC--------------CHHHHHHHHHHHHHHHHhCCCcEEEecCc
Q 027914 5 KRREVVVSALQFAC-TD--------------DVSTNLATAERLVRAAHGKGANIILIQEL 49 (217)
Q Consensus 5 ~~~~~~ia~vQ~~~-~~--------------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~ 49 (217)
|.+.|||..+|-.+ .+ +++.-.+++.+.++.|.+.|+|+.=+--+
T Consensus 57 ~aD~~rI~saqG~vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgF 116 (351)
T COG5322 57 MADEMRIRSAQGKVIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGF 116 (351)
T ss_pred cccceEEEeecccEEEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecch
Confidence 45678888888765 11 46778888999999999999999776655
No 305
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=22.84 E-value=2.3e+02 Score=23.01 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEe
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (217)
+.+...+..+.|.+.|+|-+++.- +.|... +.....+.++.++...++.|+
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~p---P~y~~~-------------~~~~i~~~f~~v~~~~~~pi~ 129 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLP---PYLTEA-------------PQEGLYAHVEAVCKSTDLGVI 129 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECC---CCCCCC-------------CHHHHHHHHHHHHhcCCCCEE
Confidence 456666778888888999877622 222211 113566778888877666653
No 306
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.74 E-value=2.6e+02 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=24.6
Q ss_pred EEEecCCcchHHHHHHHHcCCcEEEeccCC
Q 027914 155 VAICWDQWFPEAARAMVLQGAEILFYPTAI 184 (217)
Q Consensus 155 ~~IC~d~~~p~~~~~~~~~g~dlil~~~~~ 184 (217)
+++.+.+..|+-.+....- +|=+++-|+.
T Consensus 208 v~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 208 VLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred eEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 4678888999999998888 9999998875
No 307
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=22.73 E-value=1.6e+02 Score=23.74 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=22.4
Q ss_pred eEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCccc
Q 027914 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFE 51 (217)
Q Consensus 9 ~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (217)
|||+....| .+...+.+..+.+ .+..+|+|++.|+=.
T Consensus 1 mkI~SwNVN---giRar~~~~~~~l---~~~~pDVlclQEtK~ 37 (261)
T COG0708 1 MKIASWNVN---GLRARLKKLLDWL---EEEQPDVLCLQETKA 37 (261)
T ss_pred CeeEEEehh---hHHHHHHHHHHHH---HHhCCCEEEEEeccc
Confidence 455554433 3455555544444 456789999999743
No 308
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=22.68 E-value=1.3e+02 Score=24.99 Aligned_cols=43 Identities=9% Similarity=0.208 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
.+.+.|.++.++.+..+++-..+... ..+.+..+++ .+|+++.
T Consensus 199 ~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm-~~G~ive 242 (330)
T PRK09473 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM-YAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE-ECCEEEE
Confidence 45677888888777777665543322 2344566677 4777654
No 309
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.65 E-value=1.5e+02 Score=23.70 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=16.0
Q ss_pred HHHHHHH-HcCCcEEEeccC
Q 027914 165 EAARAMV-LQGAEILFYPTA 183 (217)
Q Consensus 165 ~~~~~~~-~~g~dlil~~~~ 183 (217)
+....+. +.|+|+++.++|
T Consensus 51 ~~~~~L~~~~g~d~ivIaCN 70 (251)
T TIGR00067 51 ELLTFLKERHNIKLLVVACN 70 (251)
T ss_pred HHHHHHHHhCCCCEEEEeCc
Confidence 4566777 889999999999
No 310
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=22.41 E-value=1.5e+02 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCeee
Q 027914 75 TILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 75 ~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~~ 117 (217)
+.+.+.++.++.++++++-....+. -.+-+..++++ +|++..
T Consensus 188 l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~-~G~i~~ 230 (377)
T PRK11607 188 MQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN-RGKFVQ 230 (377)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe-CCEEEE
Confidence 4466677777778887776554432 24445666773 776643
No 311
>PRK09989 hypothetical protein; Provisional
Probab=22.37 E-value=3.9e+02 Score=20.99 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEE-ecCcccCcccCccc-hhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 22 VSTNLATAERLVRAAHGKGANIIL-IQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv-~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
..+..+.+.+.++.|.+-|++.|+ +|- +.+... ..+..+.. -+.+..+.+.+++.++.+..
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~g-----~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMAG-----VVPAGEDAERYRAVF-----IDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECcc-----CCCCCCCHHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 345567788888888888998664 443 221111 01111111 13457777888888988765
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=22.36 E-value=93 Score=27.58 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=42.8
Q ss_pred hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeee
Q 027914 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~ 117 (217)
-+++++++|=|-.-. .+| ++. .++++.++.++++....|.++.--.+--.+-.++.++ ..|+++.
T Consensus 156 yr~a~iLILDEPTaV-LTP----~E~---------~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL-R~Gkvvg 220 (501)
T COG3845 156 YRGARLLILDEPTAV-LTP----QEA---------DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL-RRGKVVG 220 (501)
T ss_pred hcCCCEEEEcCCccc-CCH----HHH---------HHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE-eCCeEEe
Confidence 458999999994211 011 111 3567888888887666666665333323455677788 6888888
Q ss_pred eee
Q 027914 118 LYR 120 (217)
Q Consensus 118 ~y~ 120 (217)
.++
T Consensus 221 t~~ 223 (501)
T COG3845 221 TVD 223 (501)
T ss_pred eec
Confidence 877
No 313
>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=2.7e+02 Score=20.15 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH-HhCCCcEE--EecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcE
Q 027914 24 TNLATAERLVRAA-HGKGANII--LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (217)
Q Consensus 24 ~n~~~~~~~i~~a-~~~~~dlv--v~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (217)
+|.+.+...+... ++.+.|+| -+||..+. ++ ...+............+|+..||.
T Consensus 46 dnVQ~l~nql~slp~~rtsd~VllqLPe~tt~-lP----------R~kplpk~k~eTkWerFAr~KGI~ 103 (172)
T COG5225 46 DNVQELKNQLCSLPARRTSDLVLLQLPESTTA-LP----------REKPLPKEKIETKWERFARTKGIE 103 (172)
T ss_pred HHHHHHHHHHhcCchhcccceeEEeCCCcccc-Cc----------ccccccccchHHHHHHHHHhcCCC
Confidence 5666666555554 45567776 46886542 21 112223345567778899987775
No 314
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=22.31 E-value=2.8e+02 Score=21.42 Aligned_cols=62 Identities=19% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHH-hCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 26 LATAERLVRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 26 ~~~~~~~i~~a~-~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
++.+...++.+. +.++++||+==+..-. ......+.... -..+...|+.+|+++++++++-.
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~--~~~~~~~~~~~-----~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMS--GSKKKGNRQQE-----VAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcC--CCCCCCCHHHH-----HHHHHHHHHHHHHHhCCeEEEec
Confidence 444445554443 3489999886543321 11000000000 02467889999999999997754
No 315
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=22.21 E-value=1.4e+02 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 75 TILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 75 ~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
+.+.+.+++++ +..+++....... ..+.+..++++ +|++.
T Consensus 183 l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~-~G~i~ 223 (250)
T PRK11264 183 VLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMD-QGRIV 223 (250)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE-CCEEE
Confidence 44556666544 5555554433222 24456677774 77664
No 316
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=22.19 E-value=1.8e+02 Score=22.03 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=20.5
Q ss_pred HHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeee
Q 027914 80 QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~ 117 (217)
+++++.+++.. ...+..|-+.++||++|.+..
T Consensus 110 ~~ia~~ygv~~------~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 110 KSIARSYGVLE------EEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred hHHHHHcCCcc------cCCCceEEEEEEECCCCEEEE
Confidence 45666666531 223445778899999997654
No 317
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.17 E-value=4e+02 Score=21.66 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcc
Q 027914 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (217)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~ 54 (217)
.+.++.++++.+.++.|++.|.++.+-.|.+.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 36788999999999999999999999999744343
No 318
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=22.14 E-value=2.4e+02 Score=20.63 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=35.3
Q ss_pred CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
.+-++++-|-+.+.+-..-+.+++|...+.+....++.+.+-+.+++....|
T Consensus 69 ~~gevL~VsQFTL~~~~~KG~rP~F~~a~~~e~A~~ly~~fv~~l~~~~~~V 120 (145)
T cd00563 69 VNGEILVVSQFTLYADTKKGRRPSFSAAAPPDKAEPLYESFVELLREKGIKV 120 (145)
T ss_pred cCCCEEEEEccccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 3669999999999877655556667766665544556666666776654343
No 319
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=22.07 E-value=1.6e+02 Score=25.92 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=33.4
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA 98 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~ 98 (217)
.+..+.++++.+++-=|++. ..++.........++++|++.++++++.+...+
T Consensus 517 KLAkllaerpn~~~iDEF~A--------------hLD~~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAA--------------HLDELTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhh--------------hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 34445556777777777432 222222235578899999999999888765443
No 320
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=22.02 E-value=1.5e+02 Score=24.60 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.++.+..+++-..+... ..+.+..+++ .+|+++
T Consensus 191 ~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm-~~G~iv 233 (326)
T PRK11022 191 QIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM-YAGQVV 233 (326)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 46688888888777777665433221 2334455566 367654
No 321
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=21.84 E-value=1.3e+02 Score=22.74 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++++ .+..+++....... ..+.+..++++ +|+++
T Consensus 164 ~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~-~g~i~ 205 (208)
T cd03268 164 ELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIIN-KGKLI 205 (208)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEE-CCEEE
Confidence 34456666655 45555554433221 23455666774 67653
No 322
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=21.50 E-value=3.3e+02 Score=22.81 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred ceEEEEEecCCcchHHHHHHHHcCCcEEEeccC-CCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914 151 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTA-IGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC 217 (217)
Q Consensus 151 ~~ig~~IC~d~~~p~~~~~~~~~g~dlil~~~~-~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~ 217 (217)
.++.++-|+=-..+++.+.+...|++=|+.-+. .+.-| ....|...+ .++.+.|++||.+
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p------~~~~~~~~l-~~~~~~Gi~VV~~ 270 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSYGVGNAP------QNPALLQEL-KEASERGIVVVNL 270 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccCCCCCCC------CCHHHHHHH-HHHHHCCCEEEEe
Confidence 578888888888899999888888887776553 11111 113455544 5788999999864
No 323
>PRK00865 glutamate racemase; Provisional
Probab=21.49 E-value=1.7e+02 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=16.9
Q ss_pred hHHHHHHHHcCCcEEEeccC
Q 027914 164 PEAARAMVLQGAEILFYPTA 183 (217)
Q Consensus 164 p~~~~~~~~~g~dlil~~~~ 183 (217)
.+..+.+.+.|+|+++.++|
T Consensus 57 ~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 57 LEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHhCCCCEEEEeCc
Confidence 45667788899999999999
No 324
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=21.44 E-value=3.5e+02 Score=22.41 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeee
Q 027914 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (217)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (217)
.....+.+...++..++.|.+-|| |....++ +.-.+.+++++++.++.|+.+
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~------------------GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGL------------------GRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGG------------------TB-HHHHHHHHHHHT-EEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCccc------------------CcCHHHHHHHHHHhCCeEEEe
Confidence 345778888888888888988887 3333222 234588999999999999886
No 325
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=21.42 E-value=2.2e+02 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEee
Q 027914 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (217)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (217)
+++|||++-|..+-.-. ..++..-.+.+.||++++.+++
T Consensus 283 ~daDLVITGEGr~D~Qs---------------~~GK~pigVA~~Akk~~vPvIa 321 (378)
T COG1929 283 KDADLVITGEGRIDSQS---------------LHGKTPIGVAKLAKKYGVPVIA 321 (378)
T ss_pred ccCCEEEeCCCcccccc---------------cCCccchHHHHhhhhhCCCEEE
Confidence 48999999997653211 1145667789999999877644
No 326
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=21.42 E-value=1.1e+02 Score=25.17 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.+ .+.+|++.....+. ..+.+..+++ .+|+++
T Consensus 203 ~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl-~~G~i~ 244 (305)
T PRK13651 203 EILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFF-KDGKII 244 (305)
T ss_pred HHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566666654 46676665544332 2455677777 588764
No 327
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.27 E-value=1.2e+02 Score=22.48 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=40.6
Q ss_pred CCHHHHHHHH---------HHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 20 DDVSTNLATA---------ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 20 ~~~~~n~~~~---------~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
..+.+|+... +=.+..|.-.+++++++=|-... ..+. ......+.+.++.++ +..+
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~-LD~~-------------~~~~l~~~l~~~~~~-~~ti 157 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRG-VDVG-------------AKAEIYRLIRELADA-GKAV 157 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcC-CCHH-------------HHHHHHHHHHHHHHC-CCEE
Confidence 3567776432 12355556679999999994321 1100 112345666666543 5555
Q ss_pred eeeeeeec-CCceEEEEEEECCCCC
Q 027914 91 PVSFFEEA-NNAHYNSIAIIDADGS 114 (217)
Q Consensus 91 ~~g~~~~~-~~~~~Ns~~~i~~~G~ 114 (217)
++...... -..+.+..++++ +|+
T Consensus 158 ii~sh~~~~~~~~~d~v~~l~-~G~ 181 (182)
T cd03215 158 LLISSELDELLGLCDRILVMY-EGR 181 (182)
T ss_pred EEEeCCHHHHHHhCCEEEEec-CCc
Confidence 55443322 223445566663 554
No 328
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=20.97 E-value=1.8e+02 Score=22.52 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-Cce-EEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAH-YNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~-~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++++ .+.+|++.....+. ... .+..+++ .+|++.
T Consensus 182 ~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l-~~G~i~ 224 (243)
T TIGR01978 182 IVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVL-LDGRIV 224 (243)
T ss_pred HHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEE-eCCEEE
Confidence 34566666654 34555554433321 223 4566677 477654
No 329
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.93 E-value=2.4e+02 Score=21.80 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (217)
..++|.+.|++++|-|-+ ...+.+.|+++++..+=|..
T Consensus 68 ~a~~ai~aGA~FivSP~~--------------------------~~~vi~~a~~~~i~~iPG~~ 105 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGT--------------------------TQELLAAANDSDVPLLPGAA 105 (201)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCCEeCCCC
Confidence 345566778888888862 15577889999998877754
No 330
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.86 E-value=1.2e+02 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++ +.+|++.....+. ..+.+.++++ .+|+++
T Consensus 176 ~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l-~~G~i~ 217 (274)
T PRK13647 176 TLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVL-KEGRVL 217 (274)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 445667777654 6676665444332 2455667777 478764
No 331
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=20.85 E-value=1.1e+02 Score=25.57 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCC
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGS 114 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~ 114 (217)
|...+++++++=|-.. |..+. ....+.+.+.++.++ +.+|++.....+. ..+.+.+++++ +|+
T Consensus 186 aL~~~P~lLiLDEPt~-gLD~~-------------~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~-~G~ 249 (340)
T PRK13536 186 ALINDPQLLILDEPTT-GLDPH-------------ARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE-AGR 249 (340)
T ss_pred HHhcCCCEEEEECCCC-CCCHH-------------HHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE-CCE
Confidence 3344778888888322 11111 113456777777653 6777666544332 35566777774 787
Q ss_pred eee
Q 027914 115 DLG 117 (217)
Q Consensus 115 ~~~ 117 (217)
++.
T Consensus 250 i~~ 252 (340)
T PRK13536 250 KIA 252 (340)
T ss_pred EEE
Confidence 654
No 332
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.83 E-value=1.9e+02 Score=22.21 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+.++++.....+. ..+.+..+++ .+|+++
T Consensus 169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~g~i~ 211 (230)
T TIGR03410 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM-ERGRVV 211 (230)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 34566677666556666555433322 2234456666 477654
No 333
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=20.83 E-value=1.5e+02 Score=23.40 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
...+.+.++.++ +.++++....... ..+.+..++++ +|.+.
T Consensus 176 ~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~-~G~i~ 217 (255)
T PRK11231 176 ELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLA-NGHVM 217 (255)
T ss_pred HHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEE-CCeEE
Confidence 344666666543 5666555443332 34556777774 77764
No 334
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.80 E-value=1.7e+02 Score=22.62 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCe
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSD 115 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~ 115 (217)
.+.+.+.+++++.+.+|++....... ...-+.+++++ +|.+
T Consensus 168 ~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~-~G~~ 209 (232)
T cd03300 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN-KGKI 209 (232)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE-CCEE
Confidence 34566777776656666655433322 23334556663 6765
No 335
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=20.79 E-value=1.5e+02 Score=22.41 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeec-CCc-eEEEEEEEC
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNA-HYNSIAIID 110 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~-~~Ns~~~i~ 110 (217)
+..|...+++++++=|-... ... .....+.+.+.+++++ +.++++.....+ -.. ..+..++++
T Consensus 115 laral~~~p~illlDEPt~~-LD~-------------~~~~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 179 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSG-LDI-------------DALRLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLY 179 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcc-CCH-------------HHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEE
Confidence 44455578999999993321 110 0012445666666554 555555433322 223 456777774
Q ss_pred CCCCee
Q 027914 111 ADGSDL 116 (217)
Q Consensus 111 ~~G~~~ 116 (217)
+|++.
T Consensus 180 -~G~i~ 184 (200)
T cd03217 180 -DGRIV 184 (200)
T ss_pred -CCEEE
Confidence 77654
No 336
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=20.74 E-value=2.1e+02 Score=23.61 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=11.0
Q ss_pred HhCCCcEEEecCcc
Q 027914 37 HGKGANIILIQELF 50 (217)
Q Consensus 37 ~~~~~dlvv~PE~~ 50 (217)
.+.++|+++.||.-
T Consensus 181 la~gad~iliPE~~ 194 (301)
T TIGR02482 181 IATGAEIIIIPEFD 194 (301)
T ss_pred HHcCCCEEEECCCC
Confidence 34489999999963
No 337
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=20.73 E-value=74 Score=25.90 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=29.5
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecC
Q 027914 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQE 48 (217)
Q Consensus 11 ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (217)
|--.|+.+..|.+..-+.+.+-++.+.+.|+|++..|+
T Consensus 57 VNP~QFg~~EDl~~YPR~l~~D~~~le~~gvd~vF~P~ 94 (285)
T COG0414 57 VNPLQFGPNEDLDRYPRTLERDLELLEKEGVDIVFAPT 94 (285)
T ss_pred eChhhcCCchhhhhCCCCHHHHHHHHHhcCCcEEeCCC
Confidence 33367777778777777777777777788999999994
No 338
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=20.71 E-value=2.9e+02 Score=22.51 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHc-CcEEe-eeee
Q 027914 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMP-VSFF 95 (217)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~-~g~~ 95 (217)
+.+...++.+.|.+.|+|-|+..- +.|...+ .....+.++++++.. ++.++ ...|
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v~~---P~y~~~~-------------~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSAVT---PFYYKFS-------------FPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeC---CcCCCCC-------------HHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 466667777888888999877622 2233221 135677788887765 55553 3444
No 339
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.70 E-value=1.2e+02 Score=22.34 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=35.8
Q ss_pred HHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEEC
Q 027914 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIID 110 (217)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~ 110 (217)
.+..|...+++++++=|-... .... ......+.+.+++++ +..+++-...... ....+..++++
T Consensus 105 ~laral~~~p~illlDEPt~~-LD~~-------------~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSG-LDPE-------------SRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccC-CCHH-------------HHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEe
Confidence 456666789999999994321 1100 012456777777665 5555444333221 22344556663
Q ss_pred CCCC
Q 027914 111 ADGS 114 (217)
Q Consensus 111 ~~G~ 114 (217)
+|+
T Consensus 170 -~g~ 172 (173)
T cd03230 170 -NGR 172 (173)
T ss_pred -CCC
Confidence 553
No 340
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=20.64 E-value=2.2e+02 Score=26.39 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=25.6
Q ss_pred HHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEE
Q 027914 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (217)
Q Consensus 35 ~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (217)
++.++|-.|++|||...+.. +.. .++..-...+|.+.++.|
T Consensus 92 ~~l~~g~~~~iFPEGtr~~~--~~~-------------~~~k~G~~~~a~~~~~pi 132 (718)
T PRK08043 92 RLVEQGRPVVIFPEGRITVT--GSL-------------MKIYDGAGFVAAKSGATV 132 (718)
T ss_pred HHHhCCCEEEEeCCCccCCC--CCc-------------cCcchHHHHHHHHCCCCE
Confidence 34567889999999865421 110 133455666777777665
No 341
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.60 E-value=1.6e+02 Score=23.57 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.++.+ .+.+|++.....+.-...+.++++ .+|+++
T Consensus 174 ~l~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~~l-~~G~i~ 214 (274)
T PRK13644 174 AVLERIKKLHE-KGKTIVYITHNLEELHDADRIIVM-DRGKIV 214 (274)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEEE-ECCEEE
Confidence 34556666654 366666554333222335667777 478764
No 342
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=20.57 E-value=2.6e+02 Score=23.78 Aligned_cols=57 Identities=7% Similarity=0.027 Sum_probs=34.7
Q ss_pred EecCCcchHH-HHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEe
Q 027914 157 ICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTD 216 (217)
Q Consensus 157 IC~d~~~p~~-~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~ 216 (217)
-|.|+..-.+ .|.++...+|+|+.....- +...+.........+.+=|+++++|-++
T Consensus 82 ~csD~nTt~F~~rvL~sE~PDlVVfTGD~i---~g~~t~Da~~sl~kAvaP~I~~~IPwA~ 139 (379)
T KOG1432|consen 82 CCSDLNTTNFVSRVLASEKPDLVVFTGDNI---FGHSTQDAATSLMKAVAPAIDRKIPWAA 139 (379)
T ss_pred hhcCccHHHHHHHHHhccCCCEEEEeCCcc---cccccHhHHHHHHHHhhhHhhcCCCeEE
Confidence 3667776555 5667778899999887633 1111222333333444667888888765
No 343
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=20.53 E-value=1.5e+02 Score=24.59 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.|.++.++.++.+++-..+... ..+.+.++++ .+|+++
T Consensus 196 ~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm-~~G~iv 238 (330)
T PRK15093 196 QIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL-YCGQTV 238 (330)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-ECCEEE
Confidence 45677888877777777665433221 1334455566 366654
No 344
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.44 E-value=2.5e+02 Score=18.00 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCcEEeeeeeeecCCceEEEEEEECCCCCeee
Q 027914 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (217)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~ 117 (217)
++.+.+.+++.++.++.+......+ ..+..+.||+|..+.
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie 106 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIE 106 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEE
Confidence 5666667777888876654343333 247889999997654
No 345
>PTZ00056 glutathione peroxidase; Provisional
Probab=20.38 E-value=3.9e+02 Score=20.29 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=10.7
Q ss_pred EEEEECCCCCeeeee
Q 027914 105 SIAIIDADGSDLGLY 119 (217)
Q Consensus 105 s~~~i~~~G~~~~~y 119 (217)
+.+++|++|.++.+|
T Consensus 147 ~tflID~~G~iv~~~ 161 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF 161 (199)
T ss_pred EEEEECCCCcEEEEe
Confidence 577888888876443
No 346
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=20.35 E-value=1.9e+02 Score=25.61 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeecC-CceEEEEEEECCCCCee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDL 116 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~~~i~~~G~~~ 116 (217)
.+.+.+.+++++.+..|++....... ..+.+..++++ +|+++
T Consensus 206 ~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~-~G~i~ 248 (520)
T TIGR03269 206 LVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE-NGEIK 248 (520)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe-CCEEe
Confidence 34566788877767666555433321 23334455553 56543
No 347
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=20.32 E-value=1.6e+02 Score=26.10 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCcEEeeeeeeec-CCceEEEEEEECCCCCeeee
Q 027914 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGL 118 (217)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~~~~~ 118 (217)
.+.+.+.+++++ +..|++...+.+ -..+.+..+++ .+|+++..
T Consensus 441 ~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l-~~G~i~~~ 484 (510)
T PRK15439 441 DIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVM-HQGEISGA 484 (510)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE-ECCEEEEE
Confidence 345666666664 555555443322 12344566777 47877643
No 348
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.30 E-value=2.6e+02 Score=21.65 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeeee
Q 027914 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (217)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (217)
.+.|.+.|++++|-|-+ ...+.+.|+++++..+-|..
T Consensus 73 a~~a~~aGA~FivsP~~--------------------------~~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 73 LRQAVDAGAQFIVSPGL--------------------------TPELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred HHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCcEECCCC
Confidence 44466678888887753 14577889999998887754
No 349
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.25 E-value=3.2e+02 Score=21.36 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCcEEeeee
Q 027914 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (217)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (217)
|.++++|++.-|+.--- ++.+--.++++|.++++.|-+..
T Consensus 98 AvE~~VDVL~~P~~~Rk-------------------d~g~dHVLAKlAa~n~VAIe~~L 137 (216)
T PRK03892 98 AIERGVDAIISPWVGRK-------------------DPGIDHVLARMAAKRGVAIGFSL 137 (216)
T ss_pred HHhcccceeecccccCc-------------------CCCccHHHHHHHHHcCeEEEEec
Confidence 44558999999985310 12233668889999999987764
No 350
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.03 E-value=3.3e+02 Score=19.28 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCcEEEecCcc
Q 027914 31 RLVRAAHGKGANIILIQELF 50 (217)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~ 50 (217)
+.++.|.+.++|+|++.-+.
T Consensus 44 ~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 44 EIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHcCCCEEEEcCch
Confidence 56667778899999986543
No 351
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=3.2e+02 Score=19.05 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=51.3
Q ss_pred cCCceEEEEEEECCCCCeeeeeecccCCCC--C----CC-cc-cccccCCCCCceeEecCCceEEEEEecCCcchHHHHH
Q 027914 98 ANNAHYNSIAIIDADGSDLGLYRKSHIPDG--P----GY-QE-KFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARA 169 (217)
Q Consensus 98 ~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~--~----~~-~e-~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~~ 169 (217)
-+|+-|+.=+++.++|++ .+..|- |... + -+ .| ..++..+. .++-+.-+-.|.+- ..++....
T Consensus 14 i~Gk~f~~DIvi~~dG~v-~rr~K~-lskrK~GTSHkl~~eEle~~lee~~---E~ivvGTG~~G~l~----l~~ea~e~ 84 (121)
T COG1504 14 IGGKDFEHDIVIRPDGKV-ERREKE-LSKRKYGTSHKLALEELEELLEEGP---EVIVVGTGQSGMLE----LSEEAREF 84 (121)
T ss_pred ECCEeccccEEEecCCce-ehhhhh-hhhhhcCcccccCHHHHHHHHhcCC---cEEEEecCceeEEE----eCHHHHHH
Confidence 356788888888899974 444442 2110 0 00 11 12344443 34444445555443 24566666
Q ss_pred HHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhh
Q 027914 170 MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQG 205 (217)
Q Consensus 170 ~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (217)
+...++++++.|+. ....+|..+...
T Consensus 85 ~r~k~~~vi~~pT~----------EAikr~nel~~~ 110 (121)
T COG1504 85 FRKKGCEVIELPTP----------EAIKRYNELRGK 110 (121)
T ss_pred HHhcCCeEEEeCCH----------HHHHHHHHHhcc
Confidence 77889999999997 346777665543
Done!