Query 027915
Match_columns 217
No_of_seqs 24 out of 26
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 04:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2np0_B Synaptotagmin-2; botuli 36.5 21 0.00071 21.1 2.0 16 83-98 10-25 (26)
2 3j15_A Protein pelota; ribosom 24.5 70 0.0024 27.6 4.0 71 36-107 210-292 (357)
3 3oby_A Protein pelota homolog; 12.0 1.3E+02 0.0043 26.2 2.7 70 37-107 197-277 (352)
4 2gfq_A UPF0204 protein PH0006; 10.6 1.8E+02 0.0061 25.3 3.2 42 80-122 134-175 (298)
5 2f40_A Hypothetical protein PF 10.2 29 0.001 26.7 -1.7 32 30-65 49-80 (96)
6 3raz_A Thioredoxin-related pro 8.8 3.9E+02 0.013 17.9 3.8 46 82-128 68-117 (151)
7 1yqe_A Hypothetical UPF0204 pr 8.6 2.5E+02 0.0085 24.1 3.3 42 80-122 112-155 (282)
8 3me7_A Putative uncharacterize 8.6 3.4E+02 0.012 19.3 3.6 49 81-130 77-140 (170)
9 2lnm_A Protein TIC 40, chlorop 8.4 1.5E+02 0.005 19.6 1.4 28 62-89 10-41 (62)
10 1lfp_A Hypothetical protein AQ 7.3 1.2E+02 0.004 25.9 0.6 90 22-132 48-143 (249)
No 1
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=36.51 E-value=21 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhcCC
Q 027915 83 TAVHKLLEELVKIEFP 98 (217)
Q Consensus 83 ~aV~KfleELvKIeFP 98 (217)
...+||+.||-||..|
T Consensus 10 ~~k~kf~nel~kiplp 25 (26)
T 2np0_B 10 KLKEKFFNEINKXXXX 25 (26)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 3567999999999766
No 2
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=24.53 E-value=70 Score=27.60 Aligned_cols=71 Identities=37% Similarity=0.419 Sum_probs=46.9
Q ss_pred hHHHHhHHHhhhcccCCcceeeeeecch---HhHHHhhcccc------ccccccchHHHHHHHHHHHhh---cCCCchhh
Q 027915 36 SKEEINKEFEEKKPELQPKVVEIYEASS---AEIKTLVKDRK------EDGLKKHSTAVHKLLEELVKI---EFPGSKAV 103 (217)
Q Consensus 36 SKE~i~kEfeeKKtELqPKVvEiYEas~---aeiK~LvKe~k------~~glKKns~aV~KfleELvKI---eFPGsK~V 103 (217)
.|+.+.+-+...-.+|+.||+ +...|+ .-+..+++++- ...+-+....+++|+++|++= -+=|-+.|
T Consensus 210 ~k~~f~~~l~~~~~~l~~kvv-~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV 288 (357)
T 3j15_A 210 VKEDFYKFLKEKYPELAKKVV-IEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEV 288 (357)
T ss_dssp HHHHHHHHHHHHSCCSSCEEC-CCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHH
T ss_pred HHHHHHHHHHHhhHHhhCeEE-EEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHH
Confidence 466666666665568999999 555554 45777777752 223445567899999999852 24466666
Q ss_pred hhhh
Q 027915 104 SEAS 107 (217)
Q Consensus 104 sEa~ 107 (217)
..|.
T Consensus 289 ~~Al 292 (357)
T 3j15_A 289 EEAV 292 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 3
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=11.96 E-value=1.3e+02 Score=26.24 Aligned_cols=70 Identities=27% Similarity=0.356 Sum_probs=42.1
Q ss_pred HHHHhHHHhhhcccCCcceeeeeecch---HhHHHhhcccc------ccccccchHHHHHHHHHHHh--hcCCCchhhhh
Q 027915 37 KEEINKEFEEKKPELQPKVVEIYEASS---AEIKTLVKDRK------EDGLKKHSTAVHKLLEELVK--IEFPGSKAVSE 105 (217)
Q Consensus 37 KE~i~kEfeeKKtELqPKVvEiYEas~---aeiK~LvKe~k------~~glKKns~aV~KfleELvK--IeFPGsK~VsE 105 (217)
|+++.+-+...-.+|+.||+ +...|+ .-+..+++++- ...+-+....+++|+++|++ --+=|-+.|.+
T Consensus 197 K~~f~~~l~~~~~~l~~kvv-~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d~~a~YG~~eV~~ 275 (352)
T 3oby_A 197 KNDFLDFLKERYPEMAKNAV-VVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKGERVAYGLDEVRE 275 (352)
T ss_dssp HHHHHHHHHHHCHHHHTTEE-ECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEE-EEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEECHHHHHH
Confidence 55555545544446888999 666554 33566666662 12334456789999999986 11224555666
Q ss_pred hh
Q 027915 106 AS 107 (217)
Q Consensus 106 a~ 107 (217)
|.
T Consensus 276 Al 277 (352)
T 3oby_A 276 AH 277 (352)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 4
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=10.63 E-value=1.8e+02 Score=25.31 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHhhcCCCchhhhhhhhhcCCccCCCceeEE
Q 027915 80 KHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFI 122 (217)
Q Consensus 80 Kns~aV~KfleELvKIeFPGsK~VsEa~sK~Gpa~vsgpi~fi 122 (217)
-|+...+.+|..|-++..+|-...-||.=- ||.-+.-|.+||
T Consensus 134 a~P~~~~~lLr~l~~~~~~~fevt~EATHH-GPt~l~~Ps~FV 175 (298)
T 2gfq_A 134 AIPSAMKLSLLKMSELNDLGWTVCYEATHH-GPTELEVPSFFI 175 (298)
T ss_dssp BCHHHHHHHHHHHHHHCCSCCEEEECCSCS-SCCCCCSBEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecccc-CCCCCCCCcEEE
Confidence 456667899999999988887777777655 999999999987
No 5
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=10.22 E-value=29 Score=26.73 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=22.2
Q ss_pred hhhhhhhHHHHhHHHhhhcccCCcceeeeeecchHh
Q 027915 30 CKSFDDSKEEINKEFEEKKPELQPKVVEIYEASSAE 65 (217)
Q Consensus 30 ~KsFdeSKE~i~kEfeeKKtELqPKVvEiYEas~ae 65 (217)
.--||+||=...+-++ +|+|-|++-=+-+..|
T Consensus 49 ~ViFDe~kl~~e~lLe----elkPEVi~ek~lTv~E 80 (96)
T 2f40_A 49 EVVIDDSKVNIEELKE----KLKGEVIEEKEITLQE 80 (96)
T ss_dssp EEECCBCSCSHHHHHH----HTTTCSSCCCCCCCSS
T ss_pred eEEECcccCCHHHHHH----HcChhhcccccccHHH
Confidence 3469999877666666 8999998755544433
No 6
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=8.83 E-value=3.9e+02 Score=17.94 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhcCCCch----hhhhhhhhcCCccCCCceeEEeecccc
Q 027915 82 STAVHKLLEELVKIEFPGSK----AVSEASSKFGAASVPGPVFFIFEKVST 128 (217)
Q Consensus 82 s~aV~KfleELvKIeFPGsK----~VsEa~sK~Gpa~vsgpi~fifeKVst 128 (217)
...+..|++.. .+.||..- ...+....||...-.-|.+|++++=..
T Consensus 68 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~ 117 (151)
T 3raz_A 68 SDNIGNFLKQT-PVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117 (151)
T ss_dssp HHHHHHHHHHS-CCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTT
T ss_pred hHHHHHHHHHc-CCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCc
Confidence 35677888774 57888542 334556678855556688999977444
No 7
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=8.63 E-value=2.5e+02 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHHhh--cCCCchhhhhhhhhcCCccCCCceeEE
Q 027915 80 KHSTAVHKLLEELVKI--EFPGSKAVSEASSKFGAASVPGPVFFI 122 (217)
Q Consensus 80 Kns~aV~KfleELvKI--eFPGsK~VsEa~sK~Gpa~vsgpi~fi 122 (217)
-|+...+.+|..|-++ ..+|-...-||.= -||.-+.-|.+||
T Consensus 112 a~P~~~~~~L~~l~~~~~~~~~fev~~EATH-HGPt~~~~Ps~FV 155 (282)
T 1yqe_A 112 PSPQTMKNYVLALRERLDRKPEFEFTMEVTH-HGPSEISKPSAFY 155 (282)
T ss_dssp BCHHHHHHHHHHHHTTGGGSTTCEEEECCSC-SSCCCCCSCEEEE
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEEccc-cCCCCCCCCcEEE
Confidence 4566678999999999 6889666666655 4999999999987
No 8
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=8.60 E-value=3.4e+02 Score=19.31 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCCC-------c-hhhhhhhhhcCCc-------cCCCceeEEeeccccce
Q 027915 81 HSTAVHKLLEELVKIEFPG-------S-KAVSEASSKFGAA-------SVPGPVFFIFEKVSTFI 130 (217)
Q Consensus 81 ns~aV~KfleELvKIeFPG-------s-K~VsEa~sK~Gpa-------~vsgpi~fifeKVstfi 130 (217)
....+.+|+++. .+.||+ . ..+.+....||=. +..-|.+|++++=...+
T Consensus 77 ~~~~~~~~~~~~-~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~ 140 (170)
T 3me7_A 77 TLEDIKRFQKEY-GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIK 140 (170)
T ss_dssp CHHHHHHHHHHT-TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEE
T ss_pred CHHHHHHHHHHc-CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEE
Confidence 456678888876 467765 2 3455555566632 34557788888654433
No 9
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=8.36 E-value=1.5e+02 Score=19.63 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=19.9
Q ss_pred chHhHHHhhcccc----ccccccchHHHHHHH
Q 027915 62 SSAEIKTLVKDRK----EDGLKKHSTAVHKLL 89 (217)
Q Consensus 62 s~aeiK~LvKe~k----~~glKKns~aV~Kfl 89 (217)
+.++|..+++||. -..+..|..++++++
T Consensus 10 ~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~ 41 (62)
T 2lnm_A 10 ENPDVAMAFQNPRVQAALMECSENPMNIMKYQ 41 (62)
T ss_dssp TSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHT
T ss_pred cChHHHHHcCCHHHHHHHHHHHHCHHHHHHHH
Confidence 5677788888874 445777888877764
No 10
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=7.35 E-value=1.2e+02 Score=25.95 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=52.6
Q ss_pred hhHHHHHHhhhhhhhHHHHhHHHhhhccc-----CCcceeeeeecchHhHHHhhccccccccccchHHHHHHHHHHHhhc
Q 027915 22 KKAAAAEACKSFDDSKEEINKEFEEKKPE-----LQPKVVEIYEASSAEIKTLVKDRKEDGLKKHSTAVHKLLEELVKIE 96 (217)
Q Consensus 22 KKAAAAEa~KsFdeSKE~i~kEfeeKKtE-----LqPKVvEiYEas~aeiK~LvKe~k~~glKKns~aV~KfleELvKIe 96 (217)
+=.+|-+-+|.-+--|.-|..-|..=.-. ++.=..|.|- |.-+-.||.--..+ +|.++
T Consensus 48 ~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~~~~eei~YEgyG--PgGvaiiVe~lTDN---~nRt~------------ 110 (249)
T 1lfp_A 48 RLRTAIEQAKKANMPWENIERAIKKGAGELEGEQFEEVIYEGYA--PGGVAVMVLATTDN---RNRTT------------ 110 (249)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSSCCCEEEEEEEEE--TTTEEEEEEEEESC---HHHHH------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcCCCcccceEEEEEEEEC--CCceEEEEEEecCC---HHHHH------------
Confidence 44556677788888888888888754332 3333333332 22222233211111 12111
Q ss_pred CCCchhhhhhhhhcCCccC-CCceeEEeeccccceec
Q 027915 97 FPGSKAVSEASSKFGAASV-PGPVFFIFEKVSTFIVT 132 (217)
Q Consensus 97 FPGsK~VsEa~sK~Gpa~v-sgpi~fifeKVstfi~~ 132 (217)
.-|.-+.+|+|-.|- +|.|.|.|++...|+..
T Consensus 111 ----~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~ 143 (249)
T 1lfp_A 111 ----SEVRHVFTKHGGNLGASGCVSYLFERKGYIEVP 143 (249)
T ss_dssp ----HHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEE
T ss_pred ----HHHHHHHhhcCceecCCCchhhhhheeeEEEEc
Confidence 124556788888775 89999999999999864
Done!