Query 027918
Match_columns 217
No_of_seqs 148 out of 1917
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.6E-43 3.5E-48 248.4 21.3 178 10-188 4-182 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 9.9E-42 2.2E-46 238.5 19.6 196 13-215 3-200 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.8E-40 8.2E-45 230.7 19.5 197 15-215 22-221 (221)
4 KOG0078 GTP-binding protein SE 100.0 1.4E-39 3.1E-44 231.8 22.7 175 9-184 6-180 (207)
5 cd04120 Rab12 Rab12 subfamily. 100.0 1.5E-37 3.2E-42 229.4 24.6 199 16-215 1-202 (202)
6 KOG0098 GTPase Rab2, small G p 100.0 3.6E-38 7.8E-43 219.1 19.8 172 12-184 3-174 (216)
7 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.2E-37 2.7E-42 220.9 20.8 176 8-184 7-182 (222)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.9E-37 6.4E-42 228.9 23.3 195 16-214 1-201 (201)
9 PLN03110 Rab GTPase; Provision 100.0 1.7E-36 3.7E-41 226.9 25.9 174 10-184 7-180 (216)
10 KOG0080 GTPase Rab18, small G 100.0 4.3E-37 9.4E-42 208.6 18.8 172 10-182 6-178 (209)
11 cd04110 Rab35 Rab35 subfamily. 100.0 3.5E-36 7.7E-41 222.7 24.7 197 12-214 3-199 (199)
12 cd04121 Rab40 Rab40 subfamily. 100.0 2.4E-36 5.1E-41 221.0 23.4 168 12-181 3-170 (189)
13 KOG0394 Ras-related GTPase [Ge 100.0 3.5E-37 7.7E-42 213.7 17.3 171 12-182 6-182 (210)
14 cd04144 Ras2 Ras2 subfamily. 100.0 3.6E-36 7.7E-41 221.2 21.5 185 17-215 1-188 (190)
15 KOG0079 GTP-binding protein H- 100.0 2.8E-37 6.1E-42 206.8 13.6 168 12-181 5-172 (198)
16 cd04126 Rab20 Rab20 subfamily. 100.0 1.9E-35 4.1E-40 220.4 22.5 188 16-214 1-220 (220)
17 cd04112 Rab26 Rab26 subfamily. 100.0 2.7E-35 5.9E-40 216.7 22.7 190 16-214 1-191 (191)
18 KOG0086 GTPase Rab4, small G p 100.0 1.2E-35 2.5E-40 200.2 16.6 183 9-192 3-185 (214)
19 cd04125 RabA_like RabA-like su 100.0 1.3E-34 2.9E-39 212.6 23.7 167 16-183 1-167 (188)
20 cd04122 Rab14 Rab14 subfamily. 100.0 7E-35 1.5E-39 210.0 21.7 164 15-179 2-165 (166)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-34 5E-39 215.8 25.1 166 13-180 11-190 (232)
22 cd04111 Rab39 Rab39 subfamily. 100.0 3E-34 6.4E-39 214.0 24.9 170 15-185 2-173 (211)
23 cd04109 Rab28 Rab28 subfamily. 100.0 1.1E-34 2.3E-39 217.2 22.4 164 16-180 1-168 (215)
24 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-34 2.4E-39 209.1 21.6 166 13-179 1-166 (167)
25 cd04118 Rab24 Rab24 subfamily. 100.0 4.1E-34 8.9E-39 210.9 24.3 168 16-184 1-172 (193)
26 PLN03108 Rab family protein; P 100.0 7.8E-34 1.7E-38 211.7 25.5 171 12-183 3-173 (210)
27 cd04133 Rop_like Rop subfamily 100.0 1.8E-34 4E-39 208.8 21.1 160 16-177 2-172 (176)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.3E-34 4.9E-39 209.5 21.4 163 13-177 3-179 (182)
29 KOG0091 GTPase Rab39, small G 100.0 3.1E-35 6.6E-40 200.2 15.6 202 13-215 6-213 (213)
30 KOG0093 GTPase Rab3, small G p 100.0 7.8E-35 1.7E-39 194.8 16.4 175 9-184 15-189 (193)
31 PTZ00369 Ras-like protein; Pro 100.0 3.9E-34 8.5E-39 210.2 21.5 166 15-182 5-171 (189)
32 cd01875 RhoG RhoG subfamily. 100.0 4.9E-34 1.1E-38 209.9 22.0 163 15-179 3-178 (191)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.5E-34 9.8E-39 206.8 21.4 165 15-181 2-167 (172)
34 cd01865 Rab3 Rab3 subfamily. 100.0 6.6E-34 1.4E-38 204.7 22.0 162 16-178 2-163 (165)
35 cd04117 Rab15 Rab15 subfamily. 100.0 5.3E-34 1.2E-38 204.4 20.9 160 16-176 1-160 (161)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8E-34 1.7E-38 204.5 21.7 163 15-178 2-164 (166)
37 cd04132 Rho4_like Rho4-like su 100.0 8.2E-34 1.8E-38 208.3 21.9 166 16-183 1-172 (187)
38 cd04127 Rab27A Rab27a subfamil 100.0 7.9E-34 1.7E-38 207.1 21.6 167 13-180 2-179 (180)
39 cd04131 Rnd Rnd subfamily. Th 100.0 6.3E-34 1.4E-38 206.8 20.8 162 15-178 1-176 (178)
40 KOG0088 GTPase Rab21, small G 100.0 9E-35 1.9E-39 197.0 14.2 174 9-183 7-180 (218)
41 PLN03071 GTP-binding nuclear p 100.0 1.2E-33 2.7E-38 211.7 22.0 164 13-180 11-174 (219)
42 cd01866 Rab2 Rab2 subfamily. 100.0 1.9E-33 4.2E-38 202.9 22.2 166 13-179 2-167 (168)
43 KOG0095 GTPase Rab30, small G 100.0 1.5E-34 3.4E-39 194.1 14.6 180 10-190 2-181 (213)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-33 2.6E-38 206.1 20.7 164 16-180 1-168 (182)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.6E-33 7.7E-38 208.4 23.3 165 16-182 2-180 (222)
46 cd01868 Rab11_like Rab11-like. 100.0 2.8E-33 6.1E-38 201.4 21.7 163 14-177 2-164 (165)
47 cd04119 RJL RJL (RabJ-Like) su 100.0 1.9E-33 4.2E-38 202.6 20.7 162 16-178 1-167 (168)
48 PF00071 Ras: Ras family; Int 100.0 2.5E-33 5.5E-38 201.0 20.6 161 17-178 1-161 (162)
49 cd01864 Rab19 Rab19 subfamily. 100.0 4.5E-33 9.8E-38 200.4 21.1 162 14-176 2-164 (165)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.3E-33 1.4E-37 201.3 20.8 161 15-177 1-174 (175)
51 cd04113 Rab4 Rab4 subfamily. 100.0 7.4E-33 1.6E-37 198.4 20.5 160 16-176 1-160 (161)
52 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-32 2.5E-37 199.0 21.6 163 17-179 2-166 (170)
53 cd00877 Ran Ran (Ras-related n 100.0 1.1E-32 2.4E-37 198.4 21.3 160 16-179 1-160 (166)
54 cd04136 Rap_like Rap-like subf 100.0 8.3E-33 1.8E-37 198.5 20.2 160 16-177 2-162 (163)
55 PLN03118 Rab family protein; P 100.0 5.5E-32 1.2E-36 202.1 25.0 171 9-181 8-180 (211)
56 KOG0081 GTPase Rab27, small G 100.0 8.6E-35 1.9E-39 197.2 8.5 179 9-188 3-191 (219)
57 smart00175 RAB Rab subfamily o 100.0 1.9E-32 4.1E-37 196.7 21.3 163 16-179 1-163 (164)
58 cd04116 Rab9 Rab9 subfamily. 100.0 2.3E-32 4.9E-37 197.6 21.4 162 13-176 3-169 (170)
59 cd04175 Rap1 Rap1 subgroup. T 100.0 1.7E-32 3.6E-37 197.2 20.5 160 16-177 2-162 (164)
60 KOG0097 GTPase Rab14, small G 100.0 1.2E-32 2.6E-37 183.5 17.8 204 11-215 7-215 (215)
61 cd04124 RabL2 RabL2 subfamily. 100.0 2.5E-32 5.5E-37 195.7 21.0 160 16-180 1-160 (161)
62 cd01871 Rac1_like Rac1-like su 100.0 2.2E-32 4.8E-37 198.2 20.7 159 16-176 2-173 (174)
63 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-32 6E-37 195.6 20.6 159 16-176 1-161 (162)
64 cd04134 Rho3 Rho3 subfamily. 100.0 4.6E-32 9.9E-37 199.2 21.0 160 17-178 2-174 (189)
65 cd04176 Rap2 Rap2 subgroup. T 100.0 4.2E-32 9.1E-37 194.9 20.3 161 15-177 1-162 (163)
66 cd01861 Rab6 Rab6 subfamily. 100.0 5.2E-32 1.1E-36 194.0 20.7 160 16-176 1-160 (161)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.1E-32 1.8E-36 192.9 20.8 159 16-177 2-161 (162)
68 smart00173 RAS Ras subfamily o 100.0 6.6E-32 1.4E-36 194.0 20.4 161 16-178 1-162 (164)
69 smart00176 RAN Ran (Ras-relate 100.0 9.2E-32 2E-36 198.2 21.0 156 21-180 1-156 (200)
70 cd04140 ARHI_like ARHI subfami 100.0 9.3E-32 2E-36 193.5 20.5 158 16-175 2-162 (165)
71 cd01860 Rab5_related Rab5-rela 100.0 1.7E-31 3.7E-36 191.7 21.4 162 15-177 1-162 (163)
72 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.5E-31 3.3E-36 193.3 21.0 162 15-177 2-168 (170)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2E-31 4.2E-36 191.5 21.0 161 15-177 2-163 (164)
74 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-31 5E-36 196.4 20.2 165 16-181 1-177 (198)
75 cd04123 Rab21 Rab21 subfamily. 100.0 5.6E-31 1.2E-35 188.6 21.3 161 16-177 1-161 (162)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.2E-31 1.4E-35 189.0 20.9 160 16-177 1-163 (164)
77 cd01862 Rab7 Rab7 subfamily. 100.0 8E-31 1.7E-35 189.8 21.5 165 16-181 1-170 (172)
78 cd01863 Rab18 Rab18 subfamily. 100.0 7.8E-31 1.7E-35 187.9 20.8 159 16-176 1-160 (161)
79 cd01873 RhoBTB RhoBTB subfamil 100.0 7.2E-31 1.6E-35 193.1 20.7 159 15-176 2-194 (195)
80 smart00174 RHO Rho (Ras homolo 100.0 6.2E-31 1.3E-35 190.8 19.5 159 18-178 1-172 (174)
81 cd04143 Rhes_like Rhes_like su 100.0 1.4E-30 3E-35 197.8 21.6 178 16-197 1-188 (247)
82 cd04114 Rab30 Rab30 subfamily. 100.0 3.2E-30 7E-35 186.1 22.3 164 13-177 5-168 (169)
83 cd04103 Centaurin_gamma Centau 100.0 9.7E-31 2.1E-35 186.6 19.0 154 16-176 1-157 (158)
84 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.7E-30 3.7E-35 188.3 20.6 158 16-175 1-171 (173)
85 cd04135 Tc10 TC10 subfamily. 100.0 1.6E-30 3.4E-35 188.6 20.4 160 16-177 1-173 (174)
86 cd01892 Miro2 Miro2 subfamily. 100.0 9.9E-31 2.2E-35 188.8 18.5 163 13-178 2-166 (169)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 3.2E-30 7E-35 186.0 21.0 161 16-178 2-164 (168)
88 cd00154 Rab Rab family. Rab G 100.0 2.7E-30 6E-35 184.0 20.0 158 16-174 1-158 (159)
89 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-30 3.5E-35 187.1 18.5 160 17-178 1-164 (165)
90 cd04148 RGK RGK subfamily. Th 100.0 7.3E-30 1.6E-34 191.5 21.3 163 16-181 1-166 (221)
91 cd04129 Rho2 Rho2 subfamily. 100.0 1.8E-29 4E-34 185.1 21.2 165 16-182 2-177 (187)
92 cd04147 Ras_dva Ras-dva subfam 100.0 1.6E-29 3.5E-34 187.0 20.2 161 17-178 1-163 (198)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.9E-32 1.9E-36 177.5 6.7 163 19-182 1-164 (192)
94 cd04139 RalA_RalB RalA/RalB su 100.0 3.9E-29 8.5E-34 179.4 20.6 161 16-178 1-162 (164)
95 cd00876 Ras Ras family. The R 100.0 2.3E-29 4.9E-34 179.9 19.0 158 17-176 1-159 (160)
96 cd01870 RhoA_like RhoA-like su 100.0 4.6E-29 1E-33 181.1 20.8 160 16-177 2-174 (175)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 8.5E-30 1.8E-34 186.2 16.8 168 15-186 3-178 (183)
98 cd04149 Arf6 Arf6 subfamily. 100.0 1.9E-29 4E-34 181.9 16.9 154 14-175 8-167 (168)
99 cd04158 ARD1 ARD1 subfamily. 100.0 4.2E-29 9.1E-34 180.4 18.1 156 17-180 1-163 (169)
100 PLN00223 ADP-ribosylation fact 100.0 4.6E-29 9.9E-34 181.9 18.4 159 13-179 15-179 (181)
101 smart00177 ARF ARF-like small 100.0 1.6E-29 3.5E-34 183.5 15.2 156 14-177 12-173 (175)
102 PTZ00133 ADP-ribosylation fact 100.0 5.3E-29 1.2E-33 181.7 16.5 159 14-180 16-180 (182)
103 cd04137 RheB Rheb (Ras Homolog 100.0 4E-28 8.8E-33 177.0 21.2 164 16-181 2-166 (180)
104 cd00157 Rho Rho (Ras homology) 100.0 3.1E-28 6.7E-33 176.0 20.3 158 16-175 1-170 (171)
105 cd04154 Arl2 Arl2 subfamily. 100.0 9.5E-29 2.1E-33 179.2 17.4 157 11-175 10-172 (173)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-28 2.3E-33 176.5 17.4 152 16-175 1-158 (159)
107 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.8E-29 3.9E-34 181.3 12.7 152 18-175 2-163 (164)
108 PTZ00132 GTP-binding nuclear p 100.0 8.7E-28 1.9E-32 180.0 21.9 166 11-180 5-170 (215)
109 cd01893 Miro1 Miro1 subfamily. 100.0 5.2E-28 1.1E-32 174.2 18.6 160 16-178 1-164 (166)
110 cd04157 Arl6 Arl6 subfamily. 100.0 1.6E-28 3.5E-33 175.9 14.7 152 17-175 1-161 (162)
111 KOG0395 Ras-related GTPase [Ge 100.0 5.3E-28 1.2E-32 176.9 17.3 164 14-179 2-166 (196)
112 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.3E-27 2.8E-32 176.1 18.1 147 16-163 1-175 (202)
113 KOG0073 GTP-binding ADP-ribosy 100.0 1.3E-27 2.9E-32 163.1 15.8 169 8-181 9-181 (185)
114 KOG0393 Ras-related small GTPa 100.0 2.8E-28 6.2E-33 174.7 12.3 167 14-182 3-183 (198)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 7.2E-28 1.6E-32 173.6 14.3 154 17-175 1-166 (167)
116 PTZ00099 rab6; Provisional 100.0 9.2E-27 2E-31 168.6 19.5 144 38-182 3-146 (176)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.2E-27 2.5E-32 171.2 14.1 152 17-175 1-159 (160)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 6.8E-27 1.5E-31 169.6 17.4 153 15-175 15-173 (174)
119 PF00025 Arf: ADP-ribosylation 100.0 1.9E-26 4.1E-31 167.2 19.0 157 13-177 12-175 (175)
120 cd04151 Arl1 Arl1 subfamily. 100.0 2.2E-27 4.8E-32 169.5 13.7 151 17-175 1-157 (158)
121 cd00879 Sar1 Sar1 subfamily. 100.0 8.1E-27 1.7E-31 171.5 16.9 155 14-176 18-189 (190)
122 cd04160 Arfrp1 Arfrp1 subfamil 100.0 8.3E-27 1.8E-31 168.0 16.4 152 17-175 1-166 (167)
123 PLN00023 GTP-binding protein; 99.9 1.3E-25 2.7E-30 173.3 21.8 144 10-153 16-189 (334)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.4E-26 3E-31 165.3 15.4 151 17-175 1-157 (158)
125 KOG4252 GTP-binding protein [S 99.9 3.1E-28 6.7E-33 168.6 4.7 173 9-183 14-186 (246)
126 smart00178 SAR Sar1p-like memb 99.9 5.3E-26 1.1E-30 166.3 16.8 155 14-176 16-183 (184)
127 cd01897 NOG NOG1 is a nucleola 99.9 5.6E-26 1.2E-30 163.8 15.5 156 16-177 1-167 (168)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 1.5E-25 3.3E-30 176.5 18.4 164 16-181 159-331 (335)
129 cd04159 Arl10_like Arl10-like 99.9 6.1E-26 1.3E-30 161.6 14.1 152 17-175 1-158 (159)
130 cd01890 LepA LepA subfamily. 99.9 1.9E-25 4.2E-30 162.6 16.1 154 17-177 2-176 (179)
131 cd01898 Obg Obg subfamily. Th 99.9 1.9E-25 4.1E-30 161.3 15.7 157 17-176 2-169 (170)
132 TIGR00231 small_GTP small GTP- 99.9 1.2E-24 2.5E-29 154.7 18.2 158 15-174 1-160 (161)
133 cd01878 HflX HflX subfamily. 99.9 2.9E-25 6.4E-30 165.0 15.1 157 12-176 38-203 (204)
134 KOG0070 GTP-binding ADP-ribosy 99.9 4.4E-25 9.6E-30 154.5 12.5 160 12-179 14-179 (181)
135 cd04171 SelB SelB subfamily. 99.9 1.2E-24 2.7E-29 156.0 15.3 153 16-175 1-163 (164)
136 cd04155 Arl3 Arl3 subfamily. 99.9 3.6E-24 7.8E-29 155.1 17.3 150 15-175 14-172 (173)
137 COG1100 GTPase SAR1 and relate 99.9 1.2E-23 2.7E-28 157.9 19.5 168 15-182 5-189 (219)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.5E-24 5.4E-29 155.1 15.0 157 17-177 2-165 (168)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 1.3E-24 2.9E-29 160.3 12.9 162 16-181 3-191 (194)
140 TIGR03156 GTP_HflX GTP-binding 99.9 4.7E-24 1E-28 169.4 16.8 155 13-176 187-350 (351)
141 TIGR02528 EutP ethanolamine ut 99.9 1.9E-24 4.2E-29 151.6 12.5 134 17-174 2-141 (142)
142 TIGR02729 Obg_CgtA Obg family 99.9 8E-24 1.7E-28 166.7 17.0 159 16-177 158-328 (329)
143 cd00882 Ras_like_GTPase Ras-li 99.9 2.3E-23 4.9E-28 146.8 16.7 154 20-174 1-156 (157)
144 PRK04213 GTP-binding protein; 99.9 1.5E-24 3.2E-29 160.9 10.9 152 14-179 8-193 (201)
145 cd01879 FeoB Ferrous iron tran 99.9 1.7E-23 3.6E-28 149.2 15.8 147 20-176 1-155 (158)
146 PF02421 FeoB_N: Ferrous iron 99.9 4.6E-24 1E-28 149.5 12.2 148 16-173 1-156 (156)
147 PRK12297 obgE GTPase CgtA; Rev 99.9 1.1E-22 2.4E-27 164.2 20.1 159 16-181 159-330 (424)
148 cd01881 Obg_like The Obg-like 99.9 1.8E-23 4E-28 151.6 13.0 154 20-176 1-175 (176)
149 PRK03003 GTP-binding protein D 99.9 3.8E-23 8.2E-28 171.1 16.4 155 14-179 37-200 (472)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.3E-23 1.8E-27 145.3 16.1 146 16-177 2-156 (157)
151 KOG0071 GTP-binding ADP-ribosy 99.9 2.3E-23 4.9E-28 138.8 11.9 156 14-177 16-177 (180)
152 TIGR00436 era GTP-binding prot 99.9 3.8E-23 8.2E-28 159.7 15.0 154 17-179 2-165 (270)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-22 2.2E-27 166.2 18.1 154 13-181 201-363 (442)
154 KOG0075 GTP-binding ADP-ribosy 99.9 6.3E-24 1.4E-28 142.5 8.3 158 15-179 20-183 (186)
155 PRK03003 GTP-binding protein D 99.9 1.3E-22 2.8E-27 167.9 16.4 162 13-180 209-384 (472)
156 cd00881 GTP_translation_factor 99.9 1.5E-22 3.3E-27 148.4 15.0 155 17-177 1-186 (189)
157 cd01889 SelB_euk SelB subfamil 99.9 7.8E-23 1.7E-27 150.6 13.2 160 16-179 1-187 (192)
158 PRK05291 trmE tRNA modificatio 99.9 1.6E-22 3.5E-27 165.8 15.7 148 15-179 215-371 (449)
159 PRK12296 obgE GTPase CgtA; Rev 99.9 3.2E-22 7E-27 163.5 17.2 163 16-182 160-344 (500)
160 cd01894 EngA1 EngA1 subfamily. 99.9 1.7E-22 3.7E-27 143.7 13.8 146 19-176 1-156 (157)
161 PRK15494 era GTPase Era; Provi 99.9 3.8E-22 8.1E-27 158.3 16.8 158 13-181 50-219 (339)
162 KOG3883 Ras family small GTPas 99.9 1.6E-21 3.4E-26 132.0 17.0 166 15-182 9-179 (198)
163 PRK11058 GTPase HflX; Provisio 99.9 5.3E-22 1.1E-26 161.1 17.7 158 15-179 197-363 (426)
164 PF08477 Miro: Miro-like prote 99.9 1.3E-22 2.7E-27 138.1 12.0 114 17-131 1-119 (119)
165 cd01895 EngA2 EngA2 subfamily. 99.9 1.3E-21 2.7E-26 141.4 16.1 156 15-176 2-173 (174)
166 TIGR01393 lepA GTP-binding pro 99.9 4.8E-22 1E-26 167.5 15.7 157 15-178 3-180 (595)
167 PRK15467 ethanolamine utilizat 99.9 4.5E-22 9.9E-27 141.8 12.9 143 17-182 3-151 (158)
168 KOG4423 GTP-binding protein-li 99.9 1.6E-24 3.4E-29 151.1 -0.0 172 12-183 22-199 (229)
169 TIGR00487 IF-2 translation ini 99.9 1.9E-21 4.1E-26 163.2 18.4 154 13-175 85-247 (587)
170 TIGR03594 GTPase_EngA ribosome 99.9 4.3E-21 9.2E-26 157.8 19.7 160 13-180 170-346 (429)
171 KOG1673 Ras GTPases [General f 99.9 4.6E-22 9.9E-27 134.9 11.4 166 13-179 18-187 (205)
172 PRK12298 obgE GTPase CgtA; Rev 99.9 2.9E-21 6.2E-26 155.2 17.8 163 16-181 160-336 (390)
173 PRK05306 infB translation init 99.9 1.5E-21 3.4E-26 167.4 16.4 158 12-175 287-449 (787)
174 CHL00189 infB translation init 99.9 1.3E-21 2.8E-26 166.6 15.1 161 13-177 242-409 (742)
175 PF00009 GTP_EFTU: Elongation 99.9 1.1E-21 2.3E-26 144.0 12.5 159 14-178 2-187 (188)
176 TIGR03598 GTPase_YsxC ribosome 99.9 1.2E-21 2.5E-26 142.7 12.5 153 8-167 11-179 (179)
177 PRK00454 engB GTP-binding prot 99.9 2.7E-21 5.9E-26 142.8 14.5 161 11-178 20-194 (196)
178 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-21 7.2E-26 158.4 15.5 151 17-179 1-161 (429)
179 TIGR00475 selB selenocysteine- 99.9 6.2E-21 1.3E-25 160.7 16.8 155 16-179 1-167 (581)
180 cd04105 SR_beta Signal recogni 99.9 6.5E-21 1.4E-25 141.2 14.4 117 17-134 2-123 (203)
181 cd01888 eIF2_gamma eIF2-gamma 99.9 3.8E-21 8.1E-26 142.7 13.1 160 16-177 1-198 (203)
182 cd04163 Era Era subfamily. Er 99.9 1.1E-20 2.3E-25 135.5 14.9 156 15-176 3-167 (168)
183 PRK09518 bifunctional cytidyla 99.9 2.2E-20 4.9E-25 161.3 18.6 157 11-179 271-437 (712)
184 PRK00089 era GTPase Era; Revie 99.9 1.2E-20 2.6E-25 147.6 14.8 158 16-179 6-172 (292)
185 KOG0076 GTP-binding ADP-ribosy 99.9 1.6E-21 3.5E-26 134.7 8.5 163 14-180 16-189 (197)
186 PRK00093 GTP-binding protein D 99.9 1.9E-20 4.2E-25 154.1 16.3 146 16-175 2-159 (435)
187 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 4.2E-21 9.1E-26 134.5 10.4 185 13-201 8-195 (216)
188 TIGR00437 feoB ferrous iron tr 99.9 1.7E-20 3.7E-25 158.2 15.9 146 22-177 1-154 (591)
189 COG1160 Predicted GTPases [Gen 99.9 7.7E-21 1.7E-25 150.8 12.9 179 16-208 4-196 (444)
190 PRK05433 GTP-binding protein L 99.9 1.2E-20 2.6E-25 159.2 14.8 160 13-179 5-185 (600)
191 cd00880 Era_like Era (E. coli 99.9 1.7E-20 3.8E-25 133.3 13.3 152 20-176 1-162 (163)
192 COG1159 Era GTPase [General fu 99.9 1.5E-20 3.2E-25 141.8 13.0 159 16-180 7-174 (298)
193 PRK00093 GTP-binding protein D 99.9 5E-20 1.1E-24 151.7 17.5 160 13-180 171-346 (435)
194 PRK09518 bifunctional cytidyla 99.8 3.5E-20 7.6E-25 160.1 15.9 158 14-180 449-623 (712)
195 PRK09554 feoB ferrous iron tra 99.8 1E-19 2.3E-24 156.9 18.6 153 15-177 3-167 (772)
196 COG2229 Predicted GTPase [Gene 99.8 1.4E-19 3E-24 126.8 15.5 155 13-176 8-176 (187)
197 KOG0074 GTP-binding ADP-ribosy 99.8 1.3E-20 2.9E-25 125.9 9.8 160 13-176 15-177 (185)
198 cd01896 DRG The developmentall 99.8 4.6E-19 1E-23 133.9 17.9 151 17-177 2-225 (233)
199 COG0486 ThdF Predicted GTPase 99.8 1.8E-19 3.8E-24 143.5 15.7 154 14-180 216-378 (454)
200 KOG0072 GTP-binding ADP-ribosy 99.8 6.6E-21 1.4E-25 127.7 6.3 159 13-179 16-180 (182)
201 PRK10218 GTP-binding protein; 99.8 2.9E-19 6.4E-24 150.3 17.1 161 14-178 4-195 (607)
202 PRK12317 elongation factor 1-a 99.8 1.1E-19 2.4E-24 148.9 14.3 155 12-170 3-197 (425)
203 TIGR00483 EF-1_alpha translati 99.8 1.1E-19 2.4E-24 148.9 13.7 154 13-170 5-199 (426)
204 TIGR01394 TypA_BipA GTP-bindin 99.8 2.8E-19 6.1E-24 150.6 15.8 156 17-178 3-191 (594)
205 TIGR00491 aIF-2 translation in 99.8 4.4E-19 9.4E-24 148.9 16.4 156 16-178 5-216 (590)
206 PF10662 PduV-EutP: Ethanolami 99.8 2.1E-19 4.6E-24 123.2 11.7 135 17-174 3-142 (143)
207 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.8E-19 6.1E-24 133.1 12.3 148 17-169 1-185 (208)
208 cd01876 YihA_EngB The YihA (En 99.8 6.7E-19 1.4E-23 126.5 13.5 151 17-176 1-169 (170)
209 cd04168 TetM_like Tet(M)-like 99.8 2.5E-18 5.4E-23 130.1 16.6 112 17-134 1-130 (237)
210 COG1160 Predicted GTPases [Gen 99.8 4.2E-18 9.1E-23 135.3 17.0 160 14-180 177-353 (444)
211 TIGR03680 eif2g_arch translati 99.8 9.1E-19 2E-23 142.4 13.1 163 14-178 3-196 (406)
212 cd01883 EF1_alpha Eukaryotic e 99.8 5E-19 1.1E-23 132.7 10.6 146 17-167 1-194 (219)
213 COG2262 HflX GTPases [General 99.8 2.3E-18 5E-23 134.9 14.5 165 9-181 186-359 (411)
214 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.5E-18 9.8E-23 124.9 15.3 147 15-167 2-172 (195)
215 KOG1489 Predicted GTP-binding 99.8 2.6E-18 5.6E-23 130.0 13.4 155 17-176 198-365 (366)
216 PRK04000 translation initiatio 99.8 1.5E-18 3.2E-23 141.2 13.0 163 12-177 6-200 (411)
217 PRK04004 translation initiatio 99.8 4.8E-18 1E-22 143.1 16.2 158 13-177 4-217 (586)
218 PRK10512 selenocysteinyl-tRNA- 99.8 5.7E-18 1.2E-22 143.3 16.1 154 17-178 2-166 (614)
219 cd04167 Snu114p Snu114p subfam 99.8 2.2E-17 4.8E-22 123.4 15.4 113 17-133 2-136 (213)
220 KOG1423 Ras-like GTPase ERA [C 99.8 1.7E-17 3.8E-22 125.0 14.2 168 9-180 66-273 (379)
221 KOG1707 Predicted Ras related/ 99.8 1.8E-18 3.9E-23 140.1 9.0 163 14-178 8-175 (625)
222 PRK12736 elongation factor Tu; 99.8 2.8E-17 6E-22 133.3 15.3 159 13-177 10-200 (394)
223 COG0370 FeoB Fe2+ transport sy 99.8 3E-17 6.5E-22 136.1 14.7 154 16-179 4-165 (653)
224 cd04165 GTPBP1_like GTPBP1-lik 99.8 8.4E-17 1.8E-21 120.7 15.9 152 17-174 1-219 (224)
225 PRK12735 elongation factor Tu; 99.7 5.1E-17 1.1E-21 131.8 15.3 158 13-176 10-201 (396)
226 COG0218 Predicted GTPase [Gene 99.7 7.3E-17 1.6E-21 115.6 14.2 160 8-178 17-197 (200)
227 cd04104 p47_IIGP_like p47 (47- 99.7 1.3E-16 2.8E-21 117.8 15.2 161 15-182 1-188 (197)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.1E-17 8.9E-22 121.9 12.5 165 17-184 1-182 (232)
229 KOG0462 Elongation factor-type 99.7 3.4E-17 7.4E-22 131.8 12.7 168 11-182 56-239 (650)
230 TIGR00485 EF-Tu translation el 99.7 7.9E-17 1.7E-21 130.7 14.7 146 13-164 10-179 (394)
231 COG1084 Predicted GTPase [Gene 99.7 1.3E-16 2.9E-21 121.6 14.7 157 14-177 167-335 (346)
232 CHL00071 tufA elongation facto 99.7 1.3E-16 2.9E-21 129.9 15.0 149 12-166 9-181 (409)
233 COG0532 InfB Translation initi 99.7 1.5E-16 3.2E-21 128.6 14.3 159 15-177 5-169 (509)
234 cd04169 RF3 RF3 subfamily. Pe 99.7 2.6E-16 5.6E-21 121.0 15.0 113 16-134 3-137 (267)
235 PLN00043 elongation factor 1-a 99.7 8.6E-17 1.9E-21 131.8 13.0 150 13-168 5-203 (447)
236 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-16 2.3E-21 123.7 12.8 144 14-162 3-186 (276)
237 cd01886 EF-G Elongation factor 99.7 1.2E-16 2.7E-21 122.9 12.9 112 17-134 1-130 (270)
238 cd01885 EF2 EF2 (for archaea a 99.7 1.2E-16 2.6E-21 119.4 12.3 113 17-133 2-138 (222)
239 PRK05124 cysN sulfate adenylyl 99.7 1.8E-16 4E-21 130.9 13.8 153 12-169 24-216 (474)
240 COG0536 Obg Predicted GTPase [ 99.7 4.7E-16 1E-20 119.2 14.0 164 16-181 160-336 (369)
241 KOG0077 Vesicle coat complex C 99.7 3.9E-17 8.5E-22 112.3 7.3 153 16-176 21-191 (193)
242 PF01926 MMR_HSR1: 50S ribosom 99.7 4.5E-16 9.8E-21 105.3 12.5 106 17-129 1-116 (116)
243 PLN03126 Elongation factor Tu; 99.7 6.3E-16 1.4E-20 127.3 15.7 148 12-165 78-249 (478)
244 TIGR02034 CysN sulfate adenyly 99.7 2E-16 4.3E-21 128.7 12.5 148 16-168 1-187 (406)
245 KOG1145 Mitochondrial translat 99.7 4.3E-16 9.4E-21 125.6 14.1 163 4-175 142-313 (683)
246 PTZ00141 elongation factor 1- 99.7 3.4E-16 7.4E-21 128.4 13.6 151 13-168 5-203 (446)
247 COG3596 Predicted GTPase [Gene 99.7 1.7E-16 3.8E-21 118.4 10.5 164 12-179 36-223 (296)
248 PRK13351 elongation factor G; 99.7 4.2E-16 9.2E-21 134.8 14.4 116 13-134 6-139 (687)
249 PRK00049 elongation factor Tu; 99.7 1.2E-15 2.5E-20 123.9 16.0 146 13-164 10-179 (396)
250 cd01899 Ygr210 Ygr210 subfamil 99.7 1.6E-15 3.4E-20 118.9 15.8 81 18-98 1-110 (318)
251 PRK00741 prfC peptide chain re 99.7 1.7E-15 3.8E-20 126.2 16.3 117 12-134 7-145 (526)
252 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.6E-15 5.6E-20 110.8 15.5 160 16-179 1-185 (196)
253 COG0481 LepA Membrane GTPase L 99.7 4.4E-16 9.6E-21 123.7 11.8 165 13-181 7-189 (603)
254 cd04170 EF-G_bact Elongation f 99.7 1.7E-15 3.7E-20 117.1 14.8 144 17-169 1-164 (268)
255 PF09439 SRPRB: Signal recogni 99.7 1.5E-16 3.3E-21 114.0 8.0 116 15-134 3-126 (181)
256 COG1163 DRG Predicted GTPase [ 99.7 4E-15 8.7E-20 113.3 15.2 155 13-177 61-288 (365)
257 PRK05506 bifunctional sulfate 99.7 7E-16 1.5E-20 132.1 12.2 153 11-168 20-211 (632)
258 TIGR00503 prfC peptide chain r 99.7 2.1E-15 4.6E-20 125.8 14.7 117 11-133 7-145 (527)
259 PLN03127 Elongation factor Tu; 99.7 2.8E-15 6.1E-20 122.9 15.1 160 12-177 58-251 (447)
260 KOG1191 Mitochondrial GTPase [ 99.7 8E-16 1.7E-20 122.8 11.2 167 14-182 267-454 (531)
261 KOG0090 Signal recognition par 99.6 1.5E-15 3.2E-20 109.0 10.2 155 16-176 39-237 (238)
262 PRK12739 elongation factor G; 99.6 4.1E-15 8.8E-20 128.5 14.9 117 12-134 5-139 (691)
263 PTZ00327 eukaryotic translatio 99.6 3E-15 6.5E-20 122.6 11.7 162 13-177 32-232 (460)
264 TIGR00484 EF-G translation elo 99.6 7E-15 1.5E-19 127.1 14.2 117 12-134 7-141 (689)
265 KOG3905 Dynein light intermedi 99.6 1.7E-14 3.8E-19 109.8 12.8 162 16-180 53-292 (473)
266 PRK09602 translation-associate 99.6 4.9E-14 1.1E-18 113.7 16.2 83 16-98 2-113 (396)
267 PRK00007 elongation factor G; 99.6 2.5E-14 5.3E-19 123.6 15.3 117 12-134 7-141 (693)
268 COG5256 TEF1 Translation elong 99.6 2.4E-14 5.3E-19 112.5 12.6 154 13-169 5-202 (428)
269 PRK12740 elongation factor G; 99.6 2.8E-14 6E-19 123.3 13.8 108 21-134 1-126 (668)
270 PRK09866 hypothetical protein; 99.6 1.4E-13 3E-18 114.5 16.8 109 64-175 230-350 (741)
271 cd01853 Toc34_like Toc34-like 99.6 8.7E-14 1.9E-18 105.7 14.6 124 8-133 24-162 (249)
272 COG4917 EutP Ethanolamine util 99.5 4.1E-14 8.9E-19 93.1 8.1 136 17-175 3-143 (148)
273 COG1217 TypA Predicted membran 99.5 1.4E-13 3.1E-18 109.4 12.7 163 15-181 5-198 (603)
274 cd00066 G-alpha G protein alph 99.5 6.2E-13 1.4E-17 104.9 15.8 124 56-181 155-314 (317)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.5E-13 9.7E-18 103.5 14.3 123 9-133 32-166 (313)
276 PF04548 AIG1: AIG1 family; I 99.5 5.2E-13 1.1E-17 99.7 13.0 161 16-180 1-188 (212)
277 TIGR00490 aEF-2 translation el 99.5 1.9E-13 4.1E-18 118.6 12.0 118 13-134 17-152 (720)
278 smart00275 G_alpha G protein a 99.5 1.3E-12 2.7E-17 104.0 15.8 127 53-181 175-337 (342)
279 PTZ00258 GTP-binding protein; 99.5 5.5E-13 1.2E-17 106.7 13.7 91 8-98 14-126 (390)
280 PRK14845 translation initiatio 99.5 5.7E-13 1.2E-17 117.7 14.5 144 27-177 473-672 (1049)
281 KOG1490 GTP-binding protein CR 99.5 1.3E-13 2.8E-18 110.5 9.4 165 13-180 166-343 (620)
282 PF05783 DLIC: Dynein light in 99.5 1.2E-12 2.6E-17 107.2 14.8 162 16-180 26-266 (472)
283 KOG1532 GTPase XAB1, interacts 99.5 2.9E-13 6.4E-18 101.0 10.1 120 63-182 115-268 (366)
284 COG2895 CysN GTPases - Sulfate 99.5 7.7E-13 1.7E-17 102.0 11.9 150 13-167 4-192 (431)
285 PRK13768 GTPase; Provisional 99.4 6.7E-13 1.5E-17 101.5 9.9 113 65-178 98-247 (253)
286 PRK07560 elongation factor EF- 99.4 1.3E-12 2.8E-17 113.7 12.5 118 13-134 18-153 (731)
287 smart00010 small_GTPase Small 99.4 1.1E-12 2.3E-17 89.5 8.9 114 16-167 1-115 (124)
288 TIGR00157 ribosome small subun 99.4 1.1E-12 2.5E-17 99.7 9.6 95 75-174 24-119 (245)
289 TIGR00101 ureG urease accessor 99.4 4.7E-12 1E-16 93.4 12.5 102 64-177 92-195 (199)
290 KOG1707 Predicted Ras related/ 99.4 1.4E-11 3.1E-16 100.6 15.3 164 8-177 418-582 (625)
291 PLN00116 translation elongatio 99.4 3.5E-12 7.5E-17 112.4 12.4 119 11-133 15-163 (843)
292 TIGR00073 hypB hydrogenase acc 99.4 2.3E-12 4.9E-17 95.9 9.6 151 11-176 18-205 (207)
293 KOG0082 G-protein alpha subuni 99.4 1.4E-11 2.9E-16 96.6 14.2 131 50-182 183-348 (354)
294 PRK09601 GTP-binding protein Y 99.4 1.6E-11 3.5E-16 97.3 14.7 83 16-98 3-107 (364)
295 TIGR02836 spore_IV_A stage IV 99.4 1.7E-11 3.7E-16 97.4 14.4 141 15-162 17-219 (492)
296 KOG0461 Selenocysteine-specifi 99.4 1.4E-11 3E-16 95.0 13.3 162 15-180 7-195 (522)
297 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.6E-11 3.4E-16 92.5 13.4 141 13-165 37-183 (225)
298 PTZ00416 elongation factor 2; 99.4 5.2E-12 1.1E-16 111.1 12.3 118 12-133 16-157 (836)
299 KOG0458 Elongation factor 1 al 99.4 1.4E-11 3E-16 100.6 13.8 157 9-169 171-373 (603)
300 PF03029 ATP_bind_1: Conserved 99.4 9.3E-14 2E-18 105.0 1.1 113 65-177 92-236 (238)
301 PF00735 Septin: Septin; Inte 99.4 6.2E-12 1.3E-16 97.3 10.9 140 15-159 4-182 (281)
302 PF05049 IIGP: Interferon-indu 99.4 6.1E-12 1.3E-16 99.7 9.8 161 13-182 33-222 (376)
303 TIGR00993 3a0901s04IAP86 chlor 99.3 2.5E-11 5.4E-16 101.6 13.2 124 9-134 112-250 (763)
304 PF00350 Dynamin_N: Dynamin fa 99.3 8.5E-12 1.9E-16 89.7 8.7 63 65-130 102-168 (168)
305 PRK09435 membrane ATPase/prote 99.3 1.1E-10 2.3E-15 92.1 14.7 105 64-179 149-261 (332)
306 KOG1547 Septin CDC10 and relat 99.3 1.3E-11 2.9E-16 90.6 8.7 151 15-170 46-235 (336)
307 KOG1144 Translation initiation 99.3 2.5E-11 5.5E-16 101.5 11.3 160 16-182 476-691 (1064)
308 COG0480 FusA Translation elong 99.3 3.1E-11 6.7E-16 103.1 12.1 129 12-145 7-153 (697)
309 COG0378 HypB Ni2+-binding GTPa 99.3 4.8E-11 1E-15 85.3 10.7 148 15-176 13-199 (202)
310 cd01900 YchF YchF subfamily. 99.3 3.7E-11 8E-16 92.3 10.6 81 18-98 1-103 (274)
311 COG5257 GCD11 Translation init 99.3 1.4E-11 3E-16 94.1 7.6 166 13-184 8-208 (415)
312 smart00053 DYNc Dynamin, GTPas 99.2 1E-10 2.3E-15 88.1 10.7 68 64-134 125-206 (240)
313 KOG3886 GTP-binding protein [S 99.2 2E-11 4.4E-16 89.0 6.4 148 15-163 4-164 (295)
314 COG5019 CDC3 Septin family pro 99.2 3.9E-10 8.5E-15 87.9 13.3 139 14-157 22-200 (373)
315 TIGR00750 lao LAO/AO transport 99.2 1.6E-10 3.5E-15 90.7 11.0 104 64-178 127-238 (300)
316 KOG0410 Predicted GTP binding 99.2 2.2E-11 4.8E-16 93.1 5.6 154 13-179 176-342 (410)
317 COG0012 Predicted GTPase, prob 99.2 8.6E-10 1.9E-14 86.5 13.5 85 15-99 2-109 (372)
318 KOG2655 Septin family protein 99.2 6.3E-10 1.4E-14 87.4 12.4 143 15-162 21-201 (366)
319 COG3276 SelB Selenocysteine-sp 99.2 8E-10 1.7E-14 88.0 12.6 152 17-178 2-162 (447)
320 PF00503 G-alpha: G-protein al 99.1 1.9E-09 4.1E-14 87.8 14.2 124 52-177 225-389 (389)
321 KOG0468 U5 snRNP-specific prot 99.1 7.6E-10 1.7E-14 91.9 10.0 116 13-132 126-261 (971)
322 PRK10463 hydrogenase nickel in 99.1 1.2E-09 2.5E-14 84.1 10.5 54 121-175 231-286 (290)
323 COG0050 TufB GTPases - transla 99.0 6.4E-09 1.4E-13 78.9 11.2 143 13-161 10-176 (394)
324 PF03308 ArgK: ArgK protein; 99.0 8.4E-10 1.8E-14 82.8 6.3 154 14-180 28-232 (266)
325 cd01855 YqeH YqeH. YqeH is an 99.0 3.2E-09 6.9E-14 78.0 9.0 94 77-178 24-125 (190)
326 PRK12289 GTPase RsgA; Reviewed 99.0 5.2E-09 1.1E-13 83.4 10.8 92 79-176 81-173 (352)
327 COG4108 PrfC Peptide chain rel 99.0 6.5E-09 1.4E-13 82.8 10.6 129 16-153 13-163 (528)
328 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4.1E-09 8.9E-14 82.2 9.2 88 82-175 73-161 (287)
329 cd01859 MJ1464 MJ1464. This f 99.0 3.3E-09 7.2E-14 75.4 8.1 94 78-178 3-96 (156)
330 KOG3887 Predicted small GTPase 99.0 4.3E-09 9.2E-14 77.7 8.1 165 16-183 28-207 (347)
331 PRK12288 GTPase RsgA; Reviewed 98.9 6.6E-09 1.4E-13 82.8 9.9 88 85-175 118-205 (347)
332 KOG0705 GTPase-activating prot 98.9 5.1E-09 1.1E-13 85.3 8.6 159 15-180 30-191 (749)
333 KOG1954 Endocytosis/signaling 98.9 1.2E-08 2.6E-13 79.7 10.0 126 6-134 49-225 (532)
334 PRK00098 GTPase RsgA; Reviewed 98.9 7.4E-09 1.6E-13 81.2 8.5 86 84-174 77-163 (298)
335 COG1703 ArgK Putative periplas 98.9 8.9E-09 1.9E-13 78.5 8.6 109 64-183 144-259 (323)
336 KOG2486 Predicted GTPase [Gene 98.9 5E-09 1.1E-13 78.8 6.7 157 12-175 133-313 (320)
337 KOG1143 Predicted translation 98.9 1E-08 2.2E-13 80.3 8.4 156 10-169 162-379 (591)
338 COG5258 GTPBP1 GTPase [General 98.9 2.4E-08 5.2E-13 78.4 10.0 162 8-173 110-334 (527)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.1E-08 2.3E-13 71.5 6.2 53 17-74 85-138 (141)
340 KOG1486 GTP-binding protein DR 98.8 3.9E-07 8.5E-12 67.9 14.3 155 16-172 63-231 (364)
341 cd04178 Nucleostemin_like Nucl 98.8 2E-08 4.3E-13 72.4 6.8 56 13-73 115-171 (172)
342 TIGR03597 GTPase_YqeH ribosome 98.8 3.8E-08 8.2E-13 79.2 8.8 95 74-176 50-151 (360)
343 KOG0099 G protein subunit Galp 98.7 3.8E-08 8.3E-13 73.5 7.3 127 51-179 191-370 (379)
344 cd01858 NGP_1 NGP-1. Autoanti 98.7 3.6E-08 7.9E-13 70.1 6.8 54 15-73 102-156 (157)
345 TIGR00092 GTP-binding protein 98.7 4.7E-08 1E-12 77.8 7.6 83 16-98 3-108 (368)
346 KOG0465 Mitochondrial elongati 98.7 1.1E-07 2.3E-12 78.7 9.2 116 13-134 37-170 (721)
347 TIGR03348 VI_IcmF type VI secr 98.7 1.5E-07 3.3E-12 86.2 10.9 113 17-134 113-257 (1169)
348 KOG1491 Predicted GTP-binding 98.7 8.4E-08 1.8E-12 74.3 7.5 86 14-99 19-126 (391)
349 cd01856 YlqF YlqF. Proteins o 98.7 1.1E-07 2.5E-12 68.5 7.3 57 13-74 113-170 (171)
350 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.3E-07 2.9E-12 73.8 8.1 58 13-75 119-177 (287)
351 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.3E-07 2.8E-12 67.2 7.4 90 84-177 5-94 (157)
352 COG1618 Predicted nucleotide k 98.6 3.6E-06 7.8E-11 58.7 14.0 147 13-177 3-175 (179)
353 TIGR03596 GTPase_YlqF ribosome 98.6 1E-07 2.3E-12 74.0 7.3 57 13-74 116-173 (276)
354 cd01855 YqeH YqeH. YqeH is an 98.6 6.2E-08 1.3E-12 71.1 5.7 53 16-73 128-189 (190)
355 KOG0467 Translation elongation 98.6 1.6E-07 3.5E-12 79.5 8.6 117 9-131 3-135 (887)
356 KOG0464 Elongation factor G [T 98.6 8.1E-09 1.8E-13 81.9 0.8 132 15-153 37-184 (753)
357 cd01859 MJ1464 MJ1464. This f 98.6 1.7E-07 3.6E-12 66.6 7.0 56 14-73 100-155 (156)
358 cd01856 YlqF YlqF. Proteins o 98.6 3.2E-07 6.9E-12 66.2 8.3 99 71-178 2-101 (171)
359 KOG0448 Mitofusin 1 GTPase, in 98.6 1.2E-06 2.6E-11 73.6 12.4 93 65-162 207-310 (749)
360 COG5192 BMS1 GTP-binding prote 98.6 6.9E-07 1.5E-11 73.7 10.6 137 13-162 67-210 (1077)
361 cd01849 YlqF_related_GTPase Yl 98.6 5.4E-07 1.2E-11 63.9 8.6 85 89-178 1-85 (155)
362 COG1161 Predicted GTPases [Gen 98.5 1.7E-07 3.6E-12 74.3 6.2 57 14-75 131-188 (322)
363 PF09547 Spore_IV_A: Stage IV 98.5 4.8E-06 1E-10 66.9 13.9 141 16-162 18-219 (492)
364 KOG0085 G protein subunit Galp 98.5 1.5E-07 3.1E-12 69.3 4.9 120 62-181 197-352 (359)
365 KOG0460 Mitochondrial translat 98.5 8.6E-07 1.9E-11 68.8 9.1 146 13-161 52-218 (449)
366 PF03193 DUF258: Protein of un 98.5 9.7E-08 2.1E-12 67.4 3.5 58 17-77 37-100 (161)
367 cd01849 YlqF_related_GTPase Yl 98.5 3.7E-07 8E-12 64.8 6.3 56 13-73 98-154 (155)
368 KOG3859 Septins (P-loop GTPase 98.5 6.5E-07 1.4E-11 67.7 7.6 59 15-73 42-104 (406)
369 cd01851 GBP Guanylate-binding 98.5 5.8E-06 1.2E-10 62.3 12.2 88 13-100 5-104 (224)
370 TIGR03596 GTPase_YlqF ribosome 98.4 1.2E-06 2.5E-11 68.2 8.5 101 71-180 4-105 (276)
371 KOG4273 Uncharacterized conser 98.4 4E-06 8.7E-11 62.6 10.0 162 16-179 5-223 (418)
372 KOG0447 Dynamin-like GTP bindi 98.4 6.8E-06 1.5E-10 67.8 11.8 135 12-150 305-508 (980)
373 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.6E-06 3.4E-11 67.8 7.8 102 70-180 6-108 (287)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.2E-06 2.5E-11 61.2 6.2 77 82-165 6-84 (141)
375 PRK12288 GTPase RsgA; Reviewed 98.4 9E-07 1.9E-11 70.7 6.2 58 18-78 208-271 (347)
376 PRK10416 signal recognition pa 98.4 4.3E-06 9.4E-11 66.1 10.0 93 64-169 197-301 (318)
377 cd03112 CobW_like The function 98.3 3.1E-06 6.6E-11 60.2 8.0 22 17-38 2-23 (158)
378 PRK01889 GTPase RsgA; Reviewed 98.3 2.9E-06 6.4E-11 68.2 8.8 84 84-174 109-193 (356)
379 KOG0463 GTP-binding protein GP 98.3 1.2E-06 2.7E-11 68.9 6.3 161 14-182 132-361 (641)
380 KOG1487 GTP-binding protein DR 98.3 7E-06 1.5E-10 61.6 9.8 82 16-99 60-148 (358)
381 KOG0466 Translation initiation 98.3 9.9E-08 2.1E-12 72.9 0.1 114 64-183 125-246 (466)
382 PRK13796 GTPase YqeH; Provisio 98.3 4.2E-06 9.1E-11 67.6 9.3 92 77-176 59-157 (365)
383 PRK14974 cell division protein 98.3 2.1E-06 4.6E-11 68.1 7.4 94 64-170 223-322 (336)
384 TIGR01425 SRP54_euk signal rec 98.3 1.7E-05 3.8E-10 64.7 12.3 134 15-159 100-273 (429)
385 TIGR00064 ftsY signal recognit 98.3 1.2E-05 2.6E-10 62.3 10.7 94 64-170 155-260 (272)
386 TIGR03597 GTPase_YqeH ribosome 98.3 1.8E-06 3.9E-11 69.6 6.3 56 16-76 155-216 (360)
387 PRK13796 GTPase YqeH; Provisio 98.3 1.4E-06 3E-11 70.3 5.5 55 16-75 161-221 (365)
388 TIGR00157 ribosome small subun 98.3 1.8E-06 3.9E-11 65.8 5.8 23 17-39 122-144 (245)
389 PRK12289 GTPase RsgA; Reviewed 98.2 2.4E-06 5.2E-11 68.3 5.5 55 18-75 175-235 (352)
390 COG3523 IcmF Type VI protein s 98.2 8.8E-06 1.9E-10 73.5 8.9 112 18-134 128-270 (1188)
391 KOG0459 Polypeptide release fa 98.2 6.8E-06 1.5E-10 65.3 6.7 156 13-171 77-279 (501)
392 PRK14722 flhF flagellar biosyn 98.2 2.4E-05 5.3E-10 62.9 10.0 137 16-159 138-315 (374)
393 COG1162 Predicted GTPases [Gen 98.1 2.8E-05 6E-10 60.2 9.4 93 80-176 72-165 (301)
394 COG1162 Predicted GTPases [Gen 98.1 4.5E-06 9.9E-11 64.4 5.1 59 17-78 166-230 (301)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.7E-06 1.4E-10 64.3 6.1 59 16-77 162-226 (287)
396 PRK13695 putative NTPase; Prov 98.1 0.00013 2.8E-09 52.7 12.3 22 16-37 1-22 (174)
397 PRK12727 flagellar biosynthesi 98.1 0.00019 4.2E-09 60.0 14.3 155 16-186 351-548 (559)
398 PRK00098 GTPase RsgA; Reviewed 98.1 7.8E-06 1.7E-10 64.3 6.0 57 17-76 166-228 (298)
399 KOG0469 Elongation factor 2 [T 98.1 1.6E-05 3.5E-10 65.0 7.7 132 12-147 16-177 (842)
400 PF03266 NTPase_1: NTPase; In 98.1 1.7E-05 3.8E-10 56.9 6.8 134 17-165 1-162 (168)
401 KOG1424 Predicted GTP-binding 98.1 7.7E-06 1.7E-10 66.8 5.3 56 15-75 314-370 (562)
402 cd03115 SRP The signal recogni 98.0 0.00011 2.4E-09 53.0 10.5 83 64-157 83-171 (173)
403 KOG1534 Putative transcription 98.0 2.6E-05 5.7E-10 56.9 6.8 122 64-188 98-261 (273)
404 PF00448 SRP54: SRP54-type pro 97.9 1.1E-05 2.4E-10 59.4 4.2 90 64-166 84-179 (196)
405 PF06858 NOG1: Nucleolar GTP-b 97.9 4.8E-05 1E-09 43.6 5.7 45 86-131 12-58 (58)
406 COG0523 Putative GTPases (G3E 97.9 0.00032 6.9E-09 55.6 12.1 97 64-170 85-193 (323)
407 cd03114 ArgK-like The function 97.9 6.7E-05 1.4E-09 52.7 7.4 57 64-131 92-148 (148)
408 PRK00771 signal recognition pa 97.9 4.1E-05 8.9E-10 63.0 6.9 85 64-160 176-267 (437)
409 PRK11889 flhF flagellar biosyn 97.8 5.9E-05 1.3E-09 60.8 6.8 132 16-159 242-411 (436)
410 PRK11537 putative GTP-binding 97.8 0.00023 4.9E-09 56.5 10.0 85 64-159 91-186 (318)
411 KOG2485 Conserved ATP/GTP bind 97.8 3.7E-05 7.9E-10 59.3 5.2 61 12-74 140-206 (335)
412 PRK14721 flhF flagellar biosyn 97.8 0.00017 3.7E-09 59.0 9.2 136 16-166 192-365 (420)
413 COG1419 FlhF Flagellar GTP-bin 97.8 0.00034 7.4E-09 56.3 10.1 154 15-180 203-396 (407)
414 PRK05703 flhF flagellar biosyn 97.8 0.00024 5.2E-09 58.6 9.4 90 64-166 300-396 (424)
415 KOG2484 GTPase [General functi 97.7 3.4E-05 7.4E-10 61.3 3.9 59 11-74 248-307 (435)
416 TIGR00959 ffh signal recogniti 97.7 0.00045 9.8E-09 56.8 10.2 86 64-160 183-274 (428)
417 PRK12726 flagellar biosynthesi 97.7 0.00021 4.5E-09 57.5 8.0 85 64-159 286-376 (407)
418 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00047 1E-08 44.2 8.2 69 18-100 2-71 (99)
419 PRK10867 signal recognition pa 97.7 0.00039 8.4E-09 57.3 9.2 86 64-160 184-275 (433)
420 cd00009 AAA The AAA+ (ATPases 97.6 0.00041 8.9E-09 47.9 7.9 24 16-39 20-43 (151)
421 PRK12724 flagellar biosynthesi 97.6 0.00052 1.1E-08 56.0 9.2 143 16-169 224-405 (432)
422 cd02042 ParA ParA and ParB of 97.6 0.00047 1E-08 45.2 7.1 82 18-111 2-84 (104)
423 PRK14723 flhF flagellar biosyn 97.5 0.00029 6.3E-09 61.5 7.2 153 17-179 187-380 (767)
424 COG0563 Adk Adenylate kinase a 97.5 7.3E-05 1.6E-09 54.1 3.0 23 16-38 1-23 (178)
425 PRK08118 topology modulation p 97.5 8.1E-05 1.8E-09 53.4 3.1 22 17-38 3-24 (167)
426 PF13207 AAA_17: AAA domain; P 97.5 8.4E-05 1.8E-09 50.2 3.0 22 17-38 1-22 (121)
427 PF11111 CENP-M: Centromere pr 97.5 0.015 3.3E-07 41.4 14.0 144 9-177 9-152 (176)
428 PF03215 Rad17: Rad17 cell cyc 97.5 0.0013 2.8E-08 55.5 9.9 22 17-38 47-68 (519)
429 COG3640 CooC CO dehydrogenase 97.5 0.00066 1.4E-08 50.6 7.1 47 82-131 150-196 (255)
430 PRK07261 topology modulation p 97.4 0.00012 2.5E-09 52.9 3.1 22 17-38 2-23 (171)
431 PRK12723 flagellar biosynthesi 97.4 0.002 4.2E-08 52.5 10.4 90 64-166 255-351 (388)
432 PRK06995 flhF flagellar biosyn 97.4 0.00028 6E-09 58.7 5.6 151 16-179 257-448 (484)
433 cd02038 FleN-like FleN is a me 97.4 0.00075 1.6E-08 46.9 6.9 105 19-131 4-108 (139)
434 PRK06731 flhF flagellar biosyn 97.4 0.00094 2E-08 51.6 8.0 132 16-159 76-245 (270)
435 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0022 4.8E-08 46.4 9.5 23 17-39 27-49 (177)
436 TIGR02475 CobW cobalamin biosy 97.4 0.0013 2.9E-08 52.7 8.8 22 17-38 6-27 (341)
437 KOG1533 Predicted GTPase [Gene 97.4 3.8E-05 8.2E-10 57.0 0.1 69 63-133 96-176 (290)
438 cd03111 CpaE_like This protein 97.4 0.00087 1.9E-08 44.2 6.6 99 22-129 7-106 (106)
439 PF13671 AAA_33: AAA domain; P 97.4 0.00014 3.1E-09 50.5 2.9 20 18-37 2-21 (143)
440 cd02036 MinD Bacterial cell di 97.3 0.011 2.3E-07 42.7 12.0 84 65-156 64-147 (179)
441 cd02019 NK Nucleoside/nucleoti 97.3 0.00028 6.1E-09 42.7 3.0 21 18-38 2-22 (69)
442 cd03110 Fer4_NifH_child This p 97.3 0.003 6.5E-08 45.7 8.9 85 63-157 92-176 (179)
443 PF05621 TniB: Bacterial TniB 97.3 0.00014 3.1E-09 56.4 2.0 100 16-129 62-189 (302)
444 PF13521 AAA_28: AAA domain; P 97.2 0.00022 4.8E-09 50.9 2.7 22 17-38 1-22 (163)
445 COG1126 GlnQ ABC-type polar am 97.2 0.00027 5.8E-09 52.1 3.0 23 17-39 30-52 (240)
446 KOG2423 Nucleolar GTPase [Gene 97.2 0.00015 3.2E-09 57.8 1.7 81 13-101 305-388 (572)
447 PF13555 AAA_29: P-loop contai 97.2 0.00038 8.3E-09 40.9 3.1 21 17-37 25-45 (62)
448 COG1136 SalX ABC-type antimicr 97.2 0.00031 6.6E-09 52.5 3.1 23 17-39 33-55 (226)
449 COG1116 TauB ABC-type nitrate/ 97.2 0.00033 7.1E-09 52.7 3.0 22 17-38 31-52 (248)
450 PF00005 ABC_tran: ABC transpo 97.2 0.00033 7.1E-09 48.4 2.9 22 17-38 13-34 (137)
451 PF03205 MobB: Molybdopterin g 97.2 0.00037 7.9E-09 48.5 3.0 22 17-38 2-23 (140)
452 COG0194 Gmk Guanylate kinase [ 97.2 0.0003 6.4E-09 50.6 2.5 24 16-39 5-28 (191)
453 PRK06217 hypothetical protein; 97.2 0.00043 9.4E-09 50.4 3.4 23 16-38 2-24 (183)
454 PF00004 AAA: ATPase family as 97.1 0.0004 8.6E-09 47.4 3.0 21 18-38 1-21 (132)
455 smart00382 AAA ATPases associa 97.1 0.00045 9.8E-09 47.2 3.3 27 16-42 3-29 (148)
456 PRK03839 putative kinase; Prov 97.1 0.00038 8.3E-09 50.5 3.0 22 17-38 2-23 (180)
457 KOG0780 Signal recognition par 97.1 0.00067 1.5E-08 54.1 4.2 95 14-108 100-234 (483)
458 PRK01889 GTPase RsgA; Reviewed 97.1 0.00049 1.1E-08 55.5 3.6 23 17-39 197-219 (356)
459 PRK14530 adenylate kinase; Pro 97.1 0.0005 1.1E-08 51.4 3.3 22 16-37 4-25 (215)
460 COG3840 ThiQ ABC-type thiamine 97.1 0.00051 1.1E-08 49.4 3.0 21 17-37 27-47 (231)
461 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0021 4.6E-08 44.1 6.0 22 17-38 24-45 (133)
462 PRK10078 ribose 1,5-bisphospho 97.1 0.00053 1.1E-08 50.1 3.3 22 17-38 4-25 (186)
463 cd00071 GMPK Guanosine monopho 97.1 0.00055 1.2E-08 47.4 3.0 21 18-38 2-22 (137)
464 TIGR02322 phosphon_PhnN phosph 97.1 0.00051 1.1E-08 49.8 3.0 22 17-38 3-24 (179)
465 PF13238 AAA_18: AAA domain; P 97.1 0.00052 1.1E-08 46.6 2.9 21 18-38 1-21 (129)
466 PRK13949 shikimate kinase; Pro 97.1 0.00057 1.2E-08 49.1 3.2 22 17-38 3-24 (169)
467 cd01131 PilT Pilus retraction 97.0 0.0033 7.2E-08 46.4 7.2 22 18-39 4-25 (198)
468 TIGR00235 udk uridine kinase. 97.0 0.00083 1.8E-08 50.0 4.0 26 13-38 4-29 (207)
469 KOG3347 Predicted nucleotide k 97.0 0.00049 1.1E-08 47.6 2.3 25 13-37 5-29 (176)
470 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00065 1.4E-08 44.7 2.8 20 17-36 17-36 (107)
471 PRK13833 conjugal transfer pro 97.0 0.003 6.5E-08 50.1 7.0 25 15-39 144-168 (323)
472 PRK14532 adenylate kinase; Pro 97.0 0.00065 1.4E-08 49.7 3.1 23 16-38 1-23 (188)
473 KOG0446 Vacuolar sorting prote 97.0 0.00028 6E-09 61.0 1.2 121 12-134 26-213 (657)
474 COG0552 FtsY Signal recognitio 97.0 0.0026 5.7E-08 50.0 6.4 142 14-169 138-326 (340)
475 PF04665 Pox_A32: Poxvirus A32 97.0 0.00073 1.6E-08 51.1 3.3 26 13-38 11-36 (241)
476 TIGR03263 guanyl_kin guanylate 97.0 0.00069 1.5E-08 49.1 3.1 22 17-38 3-24 (180)
477 COG0541 Ffh Signal recognition 97.0 0.0022 4.7E-08 52.1 6.0 26 12-37 97-122 (451)
478 PRK14738 gmk guanylate kinase; 97.0 0.0013 2.7E-08 49.0 4.5 25 14-38 12-36 (206)
479 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00069 1.5E-08 49.4 3.0 22 16-37 4-25 (188)
480 PF07728 AAA_5: AAA domain (dy 97.0 0.00074 1.6E-08 46.8 2.9 22 17-38 1-22 (139)
481 PRK05416 glmZ(sRNA)-inactivati 96.9 0.0091 2E-07 46.7 9.2 20 17-36 8-27 (288)
482 COG1120 FepC ABC-type cobalami 96.9 0.00072 1.6E-08 51.6 3.0 21 17-37 30-50 (258)
483 cd03238 ABC_UvrA The excision 96.9 0.00085 1.8E-08 48.6 3.3 21 17-37 23-43 (176)
484 KOG3929 Uncharacterized conser 96.9 0.00031 6.8E-09 52.9 1.0 84 15-101 45-133 (363)
485 KOG0066 eIF2-interacting prote 96.9 0.0093 2E-07 48.8 9.3 30 9-38 607-636 (807)
486 cd01130 VirB11-like_ATPase Typ 96.9 0.00083 1.8E-08 49.1 3.2 23 16-38 26-48 (186)
487 PRK00625 shikimate kinase; Pro 96.9 0.0008 1.7E-08 48.5 3.0 22 17-38 2-23 (173)
488 PRK13900 type IV secretion sys 96.9 0.0043 9.4E-08 49.5 7.4 25 15-39 160-184 (332)
489 PRK14531 adenylate kinase; Pro 96.9 0.00088 1.9E-08 48.8 3.3 23 16-38 3-25 (183)
490 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.2E-08 50.2 3.7 23 15-37 6-28 (229)
491 cd02023 UMPK Uridine monophosp 96.9 0.00076 1.7E-08 49.7 3.0 21 18-38 2-22 (198)
492 COG3839 MalK ABC-type sugar tr 96.9 0.00076 1.6E-08 53.5 3.0 21 18-38 32-52 (338)
493 PRK02496 adk adenylate kinase; 96.9 0.00097 2.1E-08 48.6 3.4 23 16-38 2-24 (184)
494 cd01129 PulE-GspE PulE/GspE Th 96.9 0.006 1.3E-07 47.2 7.8 23 17-39 82-104 (264)
495 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00085 1.8E-08 51.0 3.0 21 17-37 32-52 (254)
496 PRK04195 replication factor C 96.9 0.0046 9.9E-08 52.1 7.7 24 16-39 40-63 (482)
497 COG3638 ABC-type phosphate/pho 96.9 0.00086 1.9E-08 50.1 3.0 21 17-37 32-52 (258)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00093 2E-08 50.0 3.3 22 17-38 32-53 (218)
499 PF07015 VirC1: VirC1 protein; 96.9 0.01 2.2E-07 44.6 8.6 102 64-171 84-187 (231)
500 PRK08233 hypothetical protein; 96.9 0.00091 2E-08 48.5 3.0 23 16-38 4-26 (182)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-43 Score=248.40 Aligned_cols=178 Identities=62% Similarity=1.039 Sum_probs=168.0
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.+||+|+|+.|+|||.|+.|+....+.+.+..|.++++....+.++++.++++||||+|+++|+....+||+++|
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEcCCCCCCHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQ 168 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 168 (217)
++|+|||+++.+||+.+..|+.++.++...++|.++|+||+|+.+ .+.++.++++.|+..++++ ++++||+++.++++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 999999999999999999999999999999999999999999976 7889999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCC
Q 027918 169 VFFSIARDIKQRLADTDSRS 188 (217)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~ 188 (217)
.|..|...+..+........
T Consensus 163 ~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHHHHHhcccCCCCC
Confidence 99999998887766544444
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-42 Score=238.55 Aligned_cols=196 Identities=42% Similarity=0.732 Sum_probs=173.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+++|+.++|||||+.|+..+.|.+...+|.+--+....+..++..+++.||||+|+++|+++.++||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45689999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||+++.+||..++.|+..+.+..++++-+.+|+||+||.+ .+.+..++++.++...+..++++||++|.|++++|..
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 999999999999999999999998887777888999999976 6889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCC--CCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918 173 IARDIKQRLADTDS--RSEPSTIKINQPDQAGGVGQAAQKSACCG 215 (217)
Q Consensus 173 l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
|.+.+.....+... ..++.++.+.+.+ +....++|||
T Consensus 162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~------~~~~~~~~C~ 200 (200)
T KOG0092|consen 162 IAEKLPCSDPQERQGLPNRRQGVDLNSNQ------EPARPSGCCA 200 (200)
T ss_pred HHHhccCccccccccccccccceecccCC------CCcCcCCcCC
Confidence 99999877665543 2222333333332 5566788887
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-40 Score=230.70 Aligned_cols=197 Identities=36% Similarity=0.606 Sum_probs=169.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|+.++||||||+++....+..+|..|.++++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~-~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||+++..+|++...|++.+....+. ++-+++|+||.||.+ .+++..++.+..+++++..|+++||+.|.|+.++|..|
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 9999999999999999999887765 466788999999987 58899999999999999999999999999999999998
Q ss_pred HHHHHHHhcccCCCCC--CCccccCCCCCCCCCCCCcCCCCCCC
Q 027918 174 ARDIKQRLADTDSRSE--PSTIKINQPDQAGGVGQAAQKSACCG 215 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
...+.+....+....+ ...+++....+.+..++ -++|||
T Consensus 181 aa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~---~~~~~C 221 (221)
T KOG0094|consen 181 AAALPGMEVLEILSKQESMVDINLKGSPNEQQASK---PGLCSC 221 (221)
T ss_pred HHhccCccccccccccccceeEEccCCCCcccccC---CCCCCC
Confidence 8888776554433332 34444443322222222 566887
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-39 Score=231.76 Aligned_cols=175 Identities=77% Similarity=1.235 Sum_probs=167.5
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
+..+++.+||+++|++++|||+++.++..+.+...+..|.++++...++..++..+.+++|||+|+++++.+...|++.|
T Consensus 6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+++++|||+++..+|+++..|+..+..+...++|+++|+||+|+.+ .+.+..+..+.+|.++|+.++++||++|.||++
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEE 164 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence 9999999999999999999999999999988999999999999976 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 027918 169 VFFSIARDIKQRLADT 184 (217)
Q Consensus 169 l~~~l~~~~~~~~~~~ 184 (217)
.|..|.+.+..+.+..
T Consensus 165 aF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 165 AFLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHHhhcchh
Confidence 9999999998765554
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.5e-37 Score=229.36 Aligned_cols=199 Identities=38% Similarity=0.751 Sum_probs=168.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+.|+++|+.|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.||||+|++.|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36999999999999999999999998888899888888888889988899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++++++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++... ++.++++||++|.|++++|++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988877666799999999999965 5667788888888875 78999999999999999999999
Q ss_pred HHHHHHh--cccCCCCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918 175 RDIKQRL--ADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215 (217)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
+.+.... +...+....+-++++++.+-+-.-+-..-+-=||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 160 DDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC 202 (202)
T ss_pred HHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence 9887653 3334444455567777766665555555444444
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-38 Score=219.11 Aligned_cols=172 Identities=51% Similarity=0.916 Sum_probs=163.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
..+.+|++++|+.|+|||.|+.+++...|.+.+..|.++++-...+.++++.++++||||+|++.+++....||+.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||++++++|..+..|+..++.+..+|+.+++++||+||.. .+.++.++.+.||++++..++++||+++.|+.|.|.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 9999999999999999999999999878899999999999976 679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 027918 172 SIARDIKQRLADT 184 (217)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (217)
.....++...+..
T Consensus 162 nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 162 NTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHhc
Confidence 9998888776655
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-37 Score=220.94 Aligned_cols=176 Identities=48% Similarity=0.848 Sum_probs=166.8
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.....++.+||+++|++++|||-|+.++..+.|.....+|.++++....+.++++.++.+||||+|+++|+.....||+.
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
+.++++|||++...+|+.+..|+.+++.+...++++++|+||+||.+ .+.+..++.+.++...+..++++||.++.+++
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999999999999988999999999999977 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 027918 168 QVFFSIARDIKQRLADT 184 (217)
Q Consensus 168 ~l~~~l~~~~~~~~~~~ 184 (217)
++|..++..++......
T Consensus 166 ~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887764443
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.9e-37 Score=228.94 Aligned_cols=195 Identities=33% Similarity=0.664 Sum_probs=161.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888998888877777777 7779999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 169 (217)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ......+++..+++..+ ..++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999998886542 24689999999999964 45667888999999988 69999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918 170 FFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (217)
|++|.+.+............+.+.....+.+ ...+++.++||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQ---TTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCccccccccc---ceeccccCCCC
Confidence 9999999987766555555444433333333 22233334777
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.7e-36 Score=226.89 Aligned_cols=174 Identities=48% Similarity=0.857 Sum_probs=156.2
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
.+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++
T Consensus 7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 34568899999999999999999999999888788888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+....+....++...+++++++||++|.|++++
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887766799999999999865 4556777888888888999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 027918 170 FFSIARDIKQRLADT 184 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (217)
|++|.+.+.......
T Consensus 166 f~~l~~~i~~~~~~~ 180 (216)
T PLN03110 166 FQTILLEIYHIISKK 180 (216)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999987765443
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=208.63 Aligned_cols=172 Identities=47% Similarity=0.802 Sum_probs=159.5
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
......+||+++|.+|+|||+|+.++..+.+.+....+.+.++....+.++++++++.||||+|+++|+.+.+.||+.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
++|+|||++.+++|..+..|++++..+.. +++-.++|+||+|... .+.++.++...|++++++-++++||++.+++..
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 99999999999999999999999988874 4566689999999643 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 027918 169 VFFSIARDIKQRLA 182 (217)
Q Consensus 169 l~~~l~~~~~~~~~ 182 (217)
.|+.|+..+++-..
T Consensus 165 ~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 165 CFEELVEKIIETPS 178 (209)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999886543
No 11
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.5e-36 Score=222.71 Aligned_cols=197 Identities=53% Similarity=0.877 Sum_probs=166.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.++.++..+++.++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 35679999999999999999999999988888888888888777888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||++++++++.+..|+..+..... ..|++||+||+|+.. ......++...++...+++++++||++|.|++++|+
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 999999999999999999999877554 689999999999865 345567778888888889999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918 172 SIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214 (217)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (217)
+|.+.+........ .....++....+..++..++++.||
T Consensus 161 ~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 161 CITELVLRAKKDNL----AKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHHhhhccC----cccccCCccccCccchhccccccCC
Confidence 99998876654432 2233445555566666667777777
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.4e-36 Score=220.98 Aligned_cols=168 Identities=48% Similarity=0.815 Sum_probs=152.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.++.+||+|+|+.|+|||||+.++..+.+...+.++.+.++....+.+++..+.+.|||++|++.|+.++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999999888877777888888777788888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|+|||++++.+++.+..|+..+..... +.|++||+||.|+.+ .+.+..++++.+++..++++++|||++|.|++++|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999977654 699999999999965 456788899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027918 172 SIARDIKQRL 181 (217)
Q Consensus 172 ~l~~~~~~~~ 181 (217)
+|.+.+....
T Consensus 161 ~l~~~i~~~~ 170 (189)
T cd04121 161 ELARIVLMRH 170 (189)
T ss_pred HHHHHHHHhc
Confidence 9998776433
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.5e-37 Score=213.75 Aligned_cols=171 Identities=41% Similarity=0.716 Sum_probs=158.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
+...+||+++|++|+|||||++++.+.+|...+..|.+.++..+.+.+++..+.++||||+|+++|.++...+|+.+|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG-IKFFETSAKTNLN 165 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (217)
+++||.+++.+|+.+..|.+++..+.. +..|+||++||+|+.+. .+.++...++.+|...+ ++||++|||+..|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999977653 46899999999999763 48899999999999887 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027918 166 VEQVFFSIARDIKQRLA 182 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~~ 182 (217)
+++.|+.+.+.......
T Consensus 166 V~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 166 VDEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999988876554
No 14
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=3.6e-36 Score=221.25 Aligned_cols=185 Identities=32% Similarity=0.583 Sum_probs=152.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.||||+|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888877777766444 3455677877899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+...+...++...+++++++||++|.|++++|++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999988876542 4689999999999865 45566777788888889999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918 174 ARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (217)
.+.+..+..... ...+.+-.++.+|.+|||
T Consensus 159 ~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGGQ------------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhcccC------------CCcCCCCCcccccccCce
Confidence 998876666531 123333444555666665
No 15
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=206.77 Aligned_cols=168 Identities=59% Similarity=0.990 Sum_probs=159.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+..++.+|+|++|+|||+|+.++....|+.+|..|.+.++...++.++|.++++.|||++|++.|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||.++.+||.+.+.|+..++..+. .+|-++|+||.|.++ .+.+..++++.|+...++.+|++|+++..++...|.
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999999999999999999999999887 589999999999876 778889999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027918 172 SIARDIKQRL 181 (217)
Q Consensus 172 ~l~~~~~~~~ 181 (217)
.|.+.+....
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999988776
No 16
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.9e-35 Score=220.45 Aligned_cols=188 Identities=30% Similarity=0.526 Sum_probs=149.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|.+|+|||||+++|..+.+.. +.++.+.++....+ ..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998865 45666655443332 3478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCccChHHHHHHHHHhC-----
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------------------SKRAVPTSKGQALADEYG----- 152 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 152 (217)
|++++++++.+..|+..+......+.|+|+|+||+|+.+ ..+.+..++++.++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888766555789999999999865 246678889999998876
Q ss_pred ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918 153 ---------IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214 (217)
Q Consensus 153 ---------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (217)
++|+++||++|.|++++|..+++.+.....+..... +.. .-....-+++..|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEA-NRT-----QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhh-hhh-----hccccCCCcccCCCCCC
Confidence 689999999999999999999988876544332211 110 11222233667789998
No 17
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.7e-35 Score=216.73 Aligned_cols=190 Identities=49% Similarity=0.900 Sum_probs=158.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+|+|++|+|||||++++.+..+. ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998875 35667777677666677888889999999999999999899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
||++++++++.+..|+..+......+.|+++|+||+|+.. .+....++...++..++++|+++||++|.|++++|.+|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887766799999999999864 345666778888888889999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918 175 RDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214 (217)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 214 (217)
+.+........... +.+....+.+.+++++||
T Consensus 160 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 160 KELKHRKYEQPDEG--------KFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHhccccCCCC--------cEEeccccCcccccCCCC
Confidence 99876643322221 112444555667788888
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=200.21 Aligned_cols=183 Identities=45% Similarity=0.761 Sum_probs=170.7
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.+.+++.+|++|+|+.|+|||.|++++..+.+......+.++++....+.+.++.++++||||.|+++|++..+.||+.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
.+.++|||++++++|+.+..|+..++.....++-+++++||.||.+ .+++...++..|+.++.+.++++|+.+|+|+.|
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 9999999999999999999999999999888888899999999965 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCc
Q 027918 169 VFFSIARDIKQRLADTDSRSEPST 192 (217)
Q Consensus 169 l~~~l~~~~~~~~~~~~~~~~~~~ 192 (217)
.|-...+.+..+.+.....++--+
T Consensus 162 aFl~c~~tIl~kIE~GElDPer~g 185 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGELDPERMG 185 (214)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHcc
Confidence 999999999988887766665443
No 19
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-34 Score=212.58 Aligned_cols=167 Identities=50% Similarity=0.862 Sum_probs=149.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988778888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|+++++++..+..|+..+......+.|+++|+||+|+.+ ...+..+....++...+++++++||++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887666689999999999865 3456677778888888899999999999999999999999
Q ss_pred HHHHHhcc
Q 027918 176 DIKQRLAD 183 (217)
Q Consensus 176 ~~~~~~~~ 183 (217)
.+..+...
T Consensus 160 ~~~~~~~~ 167 (188)
T cd04125 160 LIIKRLEE 167 (188)
T ss_pred HHHHHhhc
Confidence 98766543
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7e-35 Score=210.01 Aligned_cols=164 Identities=48% Similarity=0.856 Sum_probs=148.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999998888888888788777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
||++++++++.+..|+..+......+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999988777656789999999999965 455677888899998899999999999999999999999
Q ss_pred HHHHH
Q 027918 175 RDIKQ 179 (217)
Q Consensus 175 ~~~~~ 179 (217)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87753
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-34 Score=215.79 Aligned_cols=166 Identities=22% Similarity=0.478 Sum_probs=147.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+++|++|+|||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45689999999999999999999999999888888876654 45778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++++|+. +..|+..+..... +.|+++|+||+|+... .+.+..++++.++..+++ .|++||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 4789999987654 6899999999998542 256788899999999998 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHH
Q 027918 160 AKTNL-NVEQVFFSIARDIKQR 180 (217)
Q Consensus 160 a~~~~-~i~~l~~~l~~~~~~~ 180 (217)
|++|. |++++|..++..+...
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99997 8999999999887764
No 22
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3e-34 Score=213.96 Aligned_cols=170 Identities=44% Similarity=0.802 Sum_probs=150.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888888888888887777766 4566899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|||++++++++.+..|+..+..... ...|+++|+||.|+.. ...+..++...+++.++++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999876543 3578899999999865 4567778888999999999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q 027918 173 IARDIKQRLADTD 185 (217)
Q Consensus 173 l~~~~~~~~~~~~ 185 (217)
|.+.+..+.....
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999887766554
No 23
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.1e-34 Score=217.20 Aligned_cols=164 Identities=34% Similarity=0.576 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888888887754 468999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
||++++++++.+..|+..+..... .++|+++|+||+|+.+ .+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999987653 3568999999999964 456777888899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 172 SIARDIKQR 180 (217)
Q Consensus 172 ~l~~~~~~~ 180 (217)
+|...+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999988764
No 24
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.1e-34 Score=209.15 Aligned_cols=166 Identities=78% Similarity=1.259 Sum_probs=150.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 36799999999999999999999999999888898888887778888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...++...+.+++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887666799999999999975 4455677788888888899999999999999999999
Q ss_pred HHHHHHH
Q 027918 173 IARDIKQ 179 (217)
Q Consensus 173 l~~~~~~ 179 (217)
|.+.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9988753
No 25
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.1e-34 Score=210.87 Aligned_cols=168 Identities=34% Similarity=0.636 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988874 5677777777677788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
||++++.+++.+..|+..+..... +.|+++|+||+|+.... ..+..+++..++...+++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876543 68999999999985422 34455677788888889999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 027918 172 SIARDIKQRLADT 184 (217)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (217)
+|.+.+.....+.
T Consensus 160 ~i~~~~~~~~~~~ 172 (193)
T cd04118 160 KVAEDFVSRANNQ 172 (193)
T ss_pred HHHHHHHHhcccc
Confidence 9999887655443
No 26
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=211.71 Aligned_cols=171 Identities=51% Similarity=0.890 Sum_probs=153.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45779999999999999999999999988888888888888777888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||++++++++.+..|+..+......+.|+++|+||+|+.+ .+....++.+.+++.++++++++||+++.|++++|.
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888776656799999999999865 455777888899999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 027918 172 SIARDIKQRLAD 183 (217)
Q Consensus 172 ~l~~~~~~~~~~ 183 (217)
++++.+.....+
T Consensus 162 ~l~~~~~~~~~~ 173 (210)
T PLN03108 162 KTAAKIYKKIQD 173 (210)
T ss_pred HHHHHHHHHhhh
Confidence 999988876543
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.8e-34 Score=208.83 Aligned_cols=160 Identities=34% Similarity=0.675 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||+|+.++..+.+...+.+|.+..+ ...+..++..+++.||||+|+++|+.++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888888887555 455677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918 96 DVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTNL 164 (217)
Q Consensus 96 d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (217)
|++++++|+.+ ..|+..+..... +.|+++|+||+|+.+.. +.+..++++.+++..+. .+++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 689999977654 69999999999995532 34778899999999987 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDI 177 (217)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (217)
|++++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.3e-34 Score=209.54 Aligned_cols=163 Identities=25% Similarity=0.556 Sum_probs=145.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888887555 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. .+.++.++++.+++.+++ +|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 789999987664 6899999999998542 345888999999999995 999999
Q ss_pred CCCCCC-HHHHHHHHHHHH
Q 027918 160 AKTNLN-VEQVFFSIARDI 177 (217)
Q Consensus 160 a~~~~~-i~~l~~~l~~~~ 177 (217)
|++|.| ++++|..+++..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999988854
No 29
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=200.20 Aligned_cols=202 Identities=40% Similarity=0.677 Sum_probs=168.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+-++++|+|++-+|||+|++.+..+.+.+-..||++.+++...+.+ .|..+++++|||+|++++++....||+++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 46689999999999999999999999999999999999998877766 57779999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCc-EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVN-KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|||++++++|+.+..|+.+...+.. +..+ +.+|++|+||.. .+++..++++.++..++..|+++|+++|.|+++.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 999999999999999999999877664 3334 468899999974 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC--CCccccCCC-CCCCCCCCCcCCCCCCC
Q 027918 170 FFSIARDIKQRLADTDSRSE--PSTIKINQP-DQAGGVGQAAQKSACCG 215 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~c~ 215 (217)
|+.|.+.+.....+.+.+-+ -.+++-..+ +...+-.-++..+.|||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 99999999988777443332 223333222 22233333444566776
No 30
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-35 Score=194.83 Aligned_cols=175 Identities=53% Similarity=0.957 Sum_probs=162.9
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
....++.+|++|+|...+|||+|+.++++..+.....+|.++++..+++--..+++++++|||.|++.|+.+...+++.+
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 33456778999999999999999999999999999999999999999887788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+++|++||+++.+++..+..|...+..+.-.+.|+|+|+||||+.+ ++.++.+....++.++|..||++||+.+.|+..
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 9999999999999999999999999988888999999999999965 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 027918 169 VFFSIARDIKQRLADT 184 (217)
Q Consensus 169 l~~~l~~~~~~~~~~~ 184 (217)
+|+.++..+-....++
T Consensus 174 ~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 174 VFERLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999887766543
No 31
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=210.21 Aligned_cols=166 Identities=39% Similarity=0.656 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 48999999999999999999999888777777766444 45667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|.+|
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998876543 4789999999999864 34556677778888888999999999999999999999
Q ss_pred HHHHHHHhc
Q 027918 174 ARDIKQRLA 182 (217)
Q Consensus 174 ~~~~~~~~~ 182 (217)
.+.+....+
T Consensus 163 ~~~l~~~~~ 171 (189)
T PTZ00369 163 VREIRKYLK 171 (189)
T ss_pred HHHHHHHhh
Confidence 988865433
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.9e-34 Score=209.90 Aligned_cols=163 Identities=31% Similarity=0.614 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|+.|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|+.++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887544 34566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEcCC
Q 027918 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK 161 (217)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (217)
||++++++++.+. .|+..+..... +.|+++|+||.||.+.. ..+..++.+.+++..+ ++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999997 58887876543 69999999999996532 2356678889999888 699999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (217)
+|.|++++|.+|++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987753
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.5e-34 Score=206.77 Aligned_cols=165 Identities=33% Similarity=0.575 Sum_probs=145.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.|||+||+..+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 37999999999999999999999998877777776444 45567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.++.++.+.+++..++++++|||++|.|++++|++|
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999988887653 34799999999999865 45677888889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027918 174 ARDIKQRL 181 (217)
Q Consensus 174 ~~~~~~~~ 181 (217)
++.+.+..
T Consensus 160 ~~~~~~~~ 167 (172)
T cd04141 160 VREIRRKE 167 (172)
T ss_pred HHHHHHhc
Confidence 98887643
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=6.6e-34 Score=204.73 Aligned_cols=162 Identities=55% Similarity=0.968 Sum_probs=144.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777777777777799999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++++++.+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++|.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999877655789999999999965 3445567777888888899999999999999999999988
Q ss_pred HHH
Q 027918 176 DIK 178 (217)
Q Consensus 176 ~~~ 178 (217)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 764
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.3e-34 Score=204.38 Aligned_cols=160 Identities=54% Similarity=0.977 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888887778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++++++.+..|+..+......+.|+++|+||.|+.. .+.+..++...+++..+.+|+++||++|.|++++|.+|.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999999877655799999999999865 4556778888999888899999999999999999999986
Q ss_pred H
Q 027918 176 D 176 (217)
Q Consensus 176 ~ 176 (217)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8e-34 Score=204.46 Aligned_cols=163 Identities=69% Similarity=1.129 Sum_probs=147.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999988888888888888878888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
||+++++++..+..|+..+......+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|.+|.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999999877655789999999999865 345667788889988899999999999999999999998
Q ss_pred HHHH
Q 027918 175 RDIK 178 (217)
Q Consensus 175 ~~~~ 178 (217)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8764
No 37
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.2e-34 Score=208.26 Aligned_cols=166 Identities=31% Similarity=0.606 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.||||||++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888777877666543 34444 6678999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHH
Q 027918 95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEQV 169 (217)
Q Consensus 95 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 169 (217)
||++++++++.+.. |+..+.... .+.|+++|+||.|+.... +.+..++.+.++...++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 99999999999864 887776543 368999999999985422 34567788889999887 9999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 027918 170 FFSIARDIKQRLAD 183 (217)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (217)
|..+.+.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988765554
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7.9e-34 Score=207.11 Aligned_cols=167 Identities=51% Similarity=0.919 Sum_probs=147.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------CeEEEEEEeeCCCcccccchhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~ 82 (217)
++.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.|||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888877776666553 4568999999999999999999
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (217)
.+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999999999987654 34689999999999865 35567788899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (217)
+|.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 39
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.3e-34 Score=206.79 Aligned_cols=162 Identities=25% Similarity=0.539 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888887555 35677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEcCC
Q 027918 95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK 161 (217)
Q Consensus 95 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (217)
||++++++++.+ ..|+..+....+ +.|+++|+||+||.+. .+.+..++++.+++.+++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 789999987764 6899999999998542 245788899999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 027918 162 TNLN-VEQVFFSIARDIK 178 (217)
Q Consensus 162 ~~~~-i~~l~~~l~~~~~ 178 (217)
+|.+ ++++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988543
No 40
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9e-35 Score=196.99 Aligned_cols=174 Identities=34% Similarity=0.686 Sum_probs=161.2
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.......+||+++|..=+|||||+-++..+.|.....+|..-.+....+.+.+.+..+.||||.|+++|..+-+.||+.+
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34456789999999999999999999999999988888887788888889988999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+++++|||++|+++|+.++.|..+++...+..+-++||+||+||.+ ++.+..++++.+++..+..|+++||+++.|+.+
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 9999999999999999999999999998887788999999999965 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 027918 169 VFFSIARDIKQRLAD 183 (217)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (217)
+|+.|...++++...
T Consensus 166 lFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988887543
No 41
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.2e-33 Score=211.68 Aligned_cols=164 Identities=30% Similarity=0.573 Sum_probs=145.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 66799999999999999999999999998888899888888777777777799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++.++..+..|+..+..... +.|+++|+||+|+.. ..+..+.+ .+++..++.|+++||++|.|++++|.+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 99999999999999999999987653 699999999999853 23334444 677777899999999999999999999
Q ss_pred HHHHHHHH
Q 027918 173 IARDIKQR 180 (217)
Q Consensus 173 l~~~~~~~ 180 (217)
|.+.+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988654
No 42
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.9e-33 Score=202.89 Aligned_cols=166 Identities=51% Similarity=0.911 Sum_probs=149.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
++.+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 56799999999999999999999999888877888888888788888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||+++++++..+..|+..+......+.|+++|+||.|+.. ......++...++...++.++++||+++.|++++|.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887656799999999999864 3456777888888888999999999999999999999
Q ss_pred HHHHHHH
Q 027918 173 IARDIKQ 179 (217)
Q Consensus 173 l~~~~~~ 179 (217)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9987753
No 43
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=194.07 Aligned_cols=180 Identities=46% Similarity=0.830 Sum_probs=163.2
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
+.++..+||+++|..|+|||.|++++..+-+++..-.+.+.++-.+++.+++..++++||||.|+++|++....||+.+|
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|+|||++..++|+-+..|+.++..+....+-.|+|+||+|+.+ .++++.+..++|.......|+++||++-.+++.+
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999999999999876677799999999865 6788899999999998889999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCC
Q 027918 170 FFSIARDIKQRLADTDSRSEP 190 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~ 190 (217)
|..+.-.+.......+.-.+.
T Consensus 161 f~~~a~rli~~ar~~d~v~~~ 181 (213)
T KOG0095|consen 161 FLDLACRLISEARQNDLVNNV 181 (213)
T ss_pred HHHHHHHHHHHHHhccchhhc
Confidence 999887776655544443333
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.2e-33 Score=206.08 Aligned_cols=164 Identities=27% Similarity=0.552 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|+.|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999988888778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|++++++++.+..|+..+........| ++|+||+|+..+ ......++.+.++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555566 678999998531 111224566778888889999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 172 SIARDIKQR 180 (217)
Q Consensus 172 ~l~~~~~~~ 180 (217)
+|.+.+...
T Consensus 160 ~l~~~l~~~ 168 (182)
T cd04128 160 IVLAKAFDL 168 (182)
T ss_pred HHHHHHHhc
Confidence 999888653
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.6e-33 Score=208.36 Aligned_cols=165 Identities=25% Similarity=0.519 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||+|+++|..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+++.+++++|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998888888875554 56778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|++++++++.+. .|...+.... .+.|+++|+||+|+..+. ..+..++.+.+++..+. +|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 5777665544 469999999999985421 23677889999999995 999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHhc
Q 027918 163 NLN-VEQVFFSIARDIKQRLA 182 (217)
Q Consensus 163 ~~~-i~~l~~~l~~~~~~~~~ 182 (217)
+.+ ++++|+.++........
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 885 99999999987766444
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.8e-33 Score=201.42 Aligned_cols=163 Identities=52% Similarity=0.898 Sum_probs=147.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+.+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 56899999999999999999999998887888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|||++++.++..+..|+..+......+.|+++|+||+|+.. .+....++.+.++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887765799999999999865 35566778888888888999999999999999999999
Q ss_pred HHHH
Q 027918 174 ARDI 177 (217)
Q Consensus 174 ~~~~ 177 (217)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.9e-33 Score=202.55 Aligned_cols=162 Identities=35% Similarity=0.753 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+++|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999988888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~-----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999977653 4689999999999864 34566777778888888999999999999999999
Q ss_pred HHHHHHHH
Q 027918 171 FSIARDIK 178 (217)
Q Consensus 171 ~~l~~~~~ 178 (217)
++|.+.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 48
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.5e-33 Score=201.03 Aligned_cols=161 Identities=41% Similarity=0.828 Sum_probs=151.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998889999999999999999999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
++++++++.+..|+..+......+.|++||+||.|+.+ .+.+..++++.+++.++.+|+++||+++.|+.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999998876799999999999865 56788899999999999999999999999999999999987
Q ss_pred HH
Q 027918 177 IK 178 (217)
Q Consensus 177 ~~ 178 (217)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-33 Score=200.37 Aligned_cols=162 Identities=49% Similarity=0.878 Sum_probs=144.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+.+||+|+|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999988888778888878877888888887899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~ 172 (217)
|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+....+.+..+++..+. .++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999876666799999999999865 345666777888888775 7899999999999999999
Q ss_pred HHHH
Q 027918 173 IARD 176 (217)
Q Consensus 173 l~~~ 176 (217)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8864
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.3e-33 Score=201.25 Aligned_cols=161 Identities=28% Similarity=0.567 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
++||+|+|.+|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888775553 4566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEcCC
Q 027918 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAK 161 (217)
Q Consensus 95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (217)
||++++++++.+. .|+..+..... +.|+++|+||+|+... .+.+..++++.+++..+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 59888876543 6899999999998543 14566778888888887 699999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDI 177 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~ 177 (217)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988753
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.4e-33 Score=198.44 Aligned_cols=160 Identities=49% Similarity=0.849 Sum_probs=145.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888788888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|+++++++..+..|+..+......+.|+++|+||.|+.. ......++...++...++.++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999988777666899999999999865 4556778888888888999999999999999999999886
Q ss_pred H
Q 027918 176 D 176 (217)
Q Consensus 176 ~ 176 (217)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 4
No 52
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.2e-32 Score=199.03 Aligned_cols=163 Identities=37% Similarity=0.695 Sum_probs=142.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998888998888877788888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
+++++++..+..|+..+.... ...+|+++|+||.|+..... ....+++..++..++.+++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999886543 44578999999999854322 2345667778888889999999999999999999999
Q ss_pred HHHHH
Q 027918 175 RDIKQ 179 (217)
Q Consensus 175 ~~~~~ 179 (217)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88753
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.1e-32 Score=198.42 Aligned_cols=160 Identities=33% Similarity=0.677 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888778888888887777777888899999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|+++++++..+..|+..+..... +.|+++|+||+|+.. .... .....++....++++++||++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 99999999999999999988765 699999999999863 2222 3345566677789999999999999999999998
Q ss_pred HHHH
Q 027918 176 DIKQ 179 (217)
Q Consensus 176 ~~~~ 179 (217)
.+..
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8764
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8.3e-33 Score=198.46 Aligned_cols=160 Identities=41% Similarity=0.724 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||++++..+.+...+.++.+ +.+...+..++..+.+.||||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777667665 444566777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+....++...+++.++.+++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999887654 34689999999999865 345566677778888889999999999999999999998
Q ss_pred HHH
Q 027918 175 RDI 177 (217)
Q Consensus 175 ~~~ 177 (217)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 55
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=5.5e-32 Score=202.10 Aligned_cols=171 Identities=51% Similarity=0.817 Sum_probs=144.2
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
..+....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 344556799999999999999999999988764 4567777777777777888778999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 89 MGILLVYDVTDESSFNNIRN-WIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
|++++|||+++++++..+.. |...+.... ..+.|+++|+||+|+.. ......++...++...+++|+++||++|.|+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999976 666665433 23579999999999865 3445677777888888899999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027918 167 EQVFFSIARDIKQRL 181 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (217)
+++|++|.+.+....
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 166 EQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887653
No 56
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-35 Score=197.22 Aligned_cols=179 Identities=49% Similarity=0.891 Sum_probs=162.1
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC---------CeEEEEEEeeCCCcccccc
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRT 79 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~ 79 (217)
.+.+++.||.+.+|++|+|||+++.++..+.+.....+++++++..+.+.++ +.++.+++|||+|++++++
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 3567899999999999999999999999999999999999999988887762 3468999999999999999
Q ss_pred hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
+...+++++-+++++||+++..+|-+++.|+..+..+. .+++.|++++||+||.+ .+.++.+.+..++.++++|||++
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeee
Confidence 99999999999999999999999999999999996654 45788999999999976 78899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 027918 159 SAKTNLNVEQVFFSIARDIKQRLADTDSRS 188 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 188 (217)
||-+|.++.+..+.|.+.++++.++.-.+.
T Consensus 162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s 191 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRIEQCVEKS 191 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999877654433
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.9e-32 Score=196.71 Aligned_cols=163 Identities=58% Similarity=1.015 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++.+++.+..|+..+..+...+.|+++|+||+|+.. ......+..+.+++..+++++++|+++|.|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887656799999999999854 3455667788888888999999999999999999999998
Q ss_pred HHHH
Q 027918 176 DIKQ 179 (217)
Q Consensus 176 ~~~~ 179 (217)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.3e-32 Score=197.65 Aligned_cols=162 Identities=43% Similarity=0.741 Sum_probs=143.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+..+||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999999888878888887777777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE 167 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 167 (217)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+. .+....++++.+++..+ .+++++||++|.|+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999999998886644 2468999999999985 35567788888988887 589999999999999
Q ss_pred HHHHHHHHH
Q 027918 168 QVFFSIARD 176 (217)
Q Consensus 168 ~l~~~l~~~ 176 (217)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 59
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.7e-32 Score=197.20 Aligned_cols=160 Identities=38% Similarity=0.720 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999998887776667665443 456777887889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ......++...+++..+++++++||++|.|++++|.+|.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999998887653 35799999999999965 344566667788888889999999999999999999998
Q ss_pred HHH
Q 027918 175 RDI 177 (217)
Q Consensus 175 ~~~ 177 (217)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 765
No 60
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=183.52 Aligned_cols=204 Identities=40% Similarity=0.731 Sum_probs=181.3
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.+.+.+|-+|+|+-|+|||.|+..+...++-..-..+.+.++....+.+.+..++++||||.|+++|+...+.+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 35678999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
.+.|||++.+.++..+..|+...+.....+..+++++||.||.. .+.+..++++.|+.+++..++++||++|.++.+.|
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999999999999888877888999999999965 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCccccCCCCCCCC-----CCCCcCCCCCCC
Q 027918 171 FSIARDIKQRLADTDSRSEPSTIKINQPDQAGG-----VGQAAQKSACCG 215 (217)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~c~ 215 (217)
-...+.+++..++.....+.-..-++..+.+++ +++..+|-+|-|
T Consensus 166 le~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 166 LETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 999999999988887777666555555555444 344555778865
No 61
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.5e-32 Score=195.68 Aligned_cols=160 Identities=31% Similarity=0.558 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|.+|+|||||++++.+..+.+.+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888877777776676667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++.++.++..|+..+..... +.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999976543 5899999999998431 234455667777889999999999999999999998
Q ss_pred HHHHH
Q 027918 176 DIKQR 180 (217)
Q Consensus 176 ~~~~~ 180 (217)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 77654
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.2e-32 Score=198.22 Aligned_cols=159 Identities=33% Similarity=0.632 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+.++..+.+...+.++.. ..+...+..++..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999988877777765 344456677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..+..++++.++++++. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5888887654 369999999999995421 34678888999999884 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARD 176 (217)
Q Consensus 163 ~~~i~~l~~~l~~~ 176 (217)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 63
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.8e-32 Score=195.57 Aligned_cols=159 Identities=38% Similarity=0.710 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC--CeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+||+++|++|+|||||++++.++.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888788888888766666666 667899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|||+++++++..+..|+..+..... +.|+++|+||+|+.. ...+..++...+++..+++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999876554 699999999999865 34566678888999999999999999999999999998
Q ss_pred HHH
Q 027918 174 ARD 176 (217)
Q Consensus 174 ~~~ 176 (217)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 64
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.6e-32 Score=199.21 Aligned_cols=160 Identities=33% Similarity=0.580 Sum_probs=137.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999988877777765543 455667777999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHhC-CeEEEEcCCCC
Q 027918 97 VTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTN 163 (217)
Q Consensus 97 ~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (217)
++++++++.+. .|+..+..... +.|+++|+||+|+.+... .+..++...++...+ ++|+++||++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 99999999986 59888876554 689999999999865321 245566777787776 68999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDIK 178 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (217)
.|++++|++|.+.+.
T Consensus 160 ~~v~e~f~~l~~~~~ 174 (189)
T cd04134 160 RGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998886
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.2e-32 Score=194.90 Aligned_cols=161 Identities=36% Similarity=0.657 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|.+|+|||||++++..+.+...+.++.+ +.+...+..++..+.+.||||||++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877766654 45556777788788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||+++++++.++..|+..+..... .+.|+++|+||+|+.. ...+...+...++...+++++++||++|.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988877542 5799999999999864 34455566778887788899999999999999999999
Q ss_pred HHHH
Q 027918 174 ARDI 177 (217)
Q Consensus 174 ~~~~ 177 (217)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8654
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=5.2e-32 Score=193.99 Aligned_cols=160 Identities=43% Similarity=0.747 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++++++.+..|+..+......+.|+++|+||+|+.. ......++...++...+++++++||+++.|+++++.+|.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998776554699999999999854 4556677788888888899999999999999999999986
Q ss_pred H
Q 027918 176 D 176 (217)
Q Consensus 176 ~ 176 (217)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 4
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.1e-32 Score=192.94 Aligned_cols=159 Identities=38% Similarity=0.676 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999888777777665433 455667777788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. ......+...++...+++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988887664 34689999999999864 44566777788888889999999999999999999998
Q ss_pred HHH
Q 027918 175 RDI 177 (217)
Q Consensus 175 ~~~ 177 (217)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=6.6e-32 Score=194.02 Aligned_cols=161 Identities=42% Similarity=0.730 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||++++.+..+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888776666655 333455667777889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++++++.+..|...+.+.. ..+.|+++|+||+|+.+ .+....+....++...+.+++++||++|.|++++|++|.
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9999999999999988886654 34689999999999865 345666778888888889999999999999999999998
Q ss_pred HHHH
Q 027918 175 RDIK 178 (217)
Q Consensus 175 ~~~~ 178 (217)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 7664
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=9.2e-32 Score=198.23 Aligned_cols=156 Identities=29% Similarity=0.628 Sum_probs=138.5
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh
Q 027918 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (217)
Q Consensus 21 ~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (217)
+|.+|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888888888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 101 SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 101 ~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
.++..+..|+..+.+... ++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.|++++|.+|.+.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999987654 699999999999854 2333333 367778889999999999999999999999988654
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=9.3e-32 Score=193.54 Aligned_cols=158 Identities=35% Similarity=0.546 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777665433 344556667789999999999999998888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|++++++++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...++...++.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999888866532 4689999999999865 3456667777888888899999999999999999999
Q ss_pred HHH
Q 027918 173 IAR 175 (217)
Q Consensus 173 l~~ 175 (217)
|++
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 875
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.7e-31 Score=191.68 Aligned_cols=162 Identities=48% Similarity=0.837 Sum_probs=144.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|++|+|||||+++|.+..+.....++.+..+....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988877777777777777888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
+|+++++++..+..|+..+......+.|+++++||+|+.. ......++...++...++.++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999877656789999999999864 344566778888888889999999999999999999998
Q ss_pred HHH
Q 027918 175 RDI 177 (217)
Q Consensus 175 ~~~ 177 (217)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.5e-31 Score=193.35 Aligned_cols=162 Identities=48% Similarity=0.884 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-chhhhcccCCcEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~ 93 (217)
.+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988887788888888887888888888999999999999887 478889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC---CCCHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQV 169 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l 169 (217)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ...+..++...++...+++++++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999999999887764 34699999999999865 455667788888888889999999999 8899999
Q ss_pred HHHHHHHH
Q 027918 170 FFSIARDI 177 (217)
Q Consensus 170 ~~~l~~~~ 177 (217)
|..|.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99988765
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2e-31 Score=191.50 Aligned_cols=161 Identities=40% Similarity=0.633 Sum_probs=137.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988766666665533 344556778778999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. ......++...+++..+++++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999998887653 34689999999999865 34456667788888888999999999999999999999
Q ss_pred HHHH
Q 027918 174 ARDI 177 (217)
Q Consensus 174 ~~~~ 177 (217)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-31 Score=196.36 Aligned_cols=165 Identities=24% Similarity=0.374 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 87 (217)
+||+|+|.+|+|||||++++.++.+...+.++.+.+.+...+.+++..+.+.||||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998887888877666666677788888999999999764421 12345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCC
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN 163 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 163 (217)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+.. .+....++.+.++. ..+++|+++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999998887764 35699999999999965 34455566666654 55789999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
.|++++|+.++..+....
T Consensus 160 ~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 160 WHILLLFKELLISATTRG 177 (198)
T ss_pred CCHHHHHHHHHHHhhccC
Confidence 999999999998776443
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=5.6e-31 Score=188.60 Aligned_cols=161 Identities=42% Similarity=0.788 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+++|.+..+...+.++.+.......+...+..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887766666666666666777777789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|++++++++.+..|+..+......+.|+++|+||+|+.. ......++...++...+.+++++|++++.|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887766799999999999864 3455667777788888899999999999999999999987
Q ss_pred HH
Q 027918 176 DI 177 (217)
Q Consensus 176 ~~ 177 (217)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 65
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=6.2e-31 Score=188.95 Aligned_cols=160 Identities=33% Similarity=0.641 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5677788888877776666664 56699999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ .........+.+....+.+++++||++|.|++++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999999887764 3589999999999854 3445555666777777889999999999999999999
Q ss_pred HHHHH
Q 027918 173 IARDI 177 (217)
Q Consensus 173 l~~~~ 177 (217)
|.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98764
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=8e-31 Score=189.75 Aligned_cols=165 Identities=45% Similarity=0.765 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777777777777777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~ 170 (217)
|++++++++.+..|...+..... .+.|+++|+||+|+.. ......+....+++..+ .+++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999999889887755442 3689999999999964 34456677777888777 799999999999999999
Q ss_pred HHHHHHHHHHh
Q 027918 171 FSIARDIKQRL 181 (217)
Q Consensus 171 ~~l~~~~~~~~ 181 (217)
++|.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887653
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=7.8e-31 Score=187.89 Aligned_cols=159 Identities=51% Similarity=0.912 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788877777777777877789999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++.+++.+..|+..+..+. ..+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999887765 35789999999999863 44566778888888899999999999999999999987
Q ss_pred HH
Q 027918 175 RD 176 (217)
Q Consensus 175 ~~ 176 (217)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 65
No 79
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.2e-31 Score=193.08 Aligned_cols=159 Identities=29% Similarity=0.496 Sum_probs=129.2
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHcCC-----CCCCcccceee-eEEEEE--------EEECCeEEEEEEeeCCCcccccc
Q 027918 15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~ 79 (217)
.+||+++|++|+|||+|+. ++.++. +...+.+|.+. +.+... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999996 665543 34556676642 322222 24678889999999999875 3
Q ss_pred hhhhcccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 027918 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES------------------KRAVP 140 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~------------------~~~~~ 140 (217)
+...+++++|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+||.+. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999997 59998877654 6899999999998642 36678
Q ss_pred hHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 141 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
.++++.+++.++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998763
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=6.2e-31 Score=190.78 Aligned_cols=159 Identities=33% Similarity=0.634 Sum_probs=136.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (217)
|+|+|++|+|||||++++.++.+...+.++.... +...+..++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999999887777776544 345667788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918 98 TDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKTNL 164 (217)
Q Consensus 98 ~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (217)
+++++++.+. .|+..+..... +.|+++|+||+|+.... ..+..++...+++..+. .++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 49988877654 69999999999986421 23566778889999886 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIK 178 (217)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (217)
|++++|+.|.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=1.4e-30 Score=197.84 Aligned_cols=178 Identities=26% Similarity=0.400 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++++++.+...+.++.+ +++...+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877777765 555667778888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCC
Q 027918 96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN 165 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~---------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 165 (217)
|++++++|+.+..|+..+... ...+.|+++|+||+|+.. .+.+..+++..++.. .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999999998888654 123689999999999865 345666777766653 357899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCccccCC
Q 027918 166 VEQVFFSIARDIKQRLADTDSRSEPSTIKINQ 197 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 197 (217)
++++|++|........ ......+.+++++.
T Consensus 159 I~elf~~L~~~~~~p~--e~~~~~~~~~~~~~ 188 (247)
T cd04143 159 LDEMFRALFSLAKLPN--EMSPSLHRKISVQY 188 (247)
T ss_pred HHHHHHHHHHHhcccc--ccCccccceeeeee
Confidence 9999999998653322 33344444444443
No 82
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.2e-30 Score=186.11 Aligned_cols=164 Identities=49% Similarity=0.871 Sum_probs=143.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988877777777777777777888888889999999999999998889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+ .+.+..+..+.+.+....+++++||++|.|++++|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999999999988877666799999999999865 3445566677777777789999999999999999999
Q ss_pred HHHHH
Q 027918 173 IARDI 177 (217)
Q Consensus 173 l~~~~ 177 (217)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98764
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=9.7e-31 Score=186.62 Aligned_cols=154 Identities=25% Similarity=0.434 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+.++..+.+...+.++ ... +...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988877655443 223 346678888888999999999864 34667899999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|++++++|+.+..|+..+..... .+.|+++|+||.|+.. ..+.+..++.+.+++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999977653 4689999999999853 34667778888888776 489999999999999999999
Q ss_pred HHHH
Q 027918 173 IARD 176 (217)
Q Consensus 173 l~~~ 176 (217)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 84
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.7e-30 Score=188.32 Aligned_cols=158 Identities=34% Similarity=0.603 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++.++.+...+.++. .+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777765 3455566778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|++++++++.+. .|+..+.... .+.|+++|+||+|+... .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6888887543 36899999999998542 345677788899998887 999999999
Q ss_pred CCCHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIAR 175 (217)
Q Consensus 163 ~~~i~~l~~~l~~ 175 (217)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988653
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=1.6e-30 Score=188.64 Aligned_cols=160 Identities=30% Similarity=0.579 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||++++.++.+...+.++.. +.....+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988776666654 334446677887788999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|++++++++.+. .|+..+... ..+.|+++|+||+|+.+.. ..+..++++.+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 588888765 4579999999999985432 24566778888888885 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDI 177 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (217)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=9.9e-31 Score=188.79 Aligned_cols=163 Identities=22% Similarity=0.305 Sum_probs=138.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+.+||+++|.+|+|||||++++.++.+. ..+.+|.+..+....+..++..+.+.+||++|.+.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999988 77888888777767777888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF 170 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (217)
++|||++++++++.+..|+..+... .+.|+++|+||+|+.+. ........+.+++.++. .++++||++|.|++++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 9999999999999998888766332 26899999999998542 22333445677777776 57999999999999999
Q ss_pred HHHHHHHH
Q 027918 171 FSIARDIK 178 (217)
Q Consensus 171 ~~l~~~~~ 178 (217)
+.|.+.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99998764
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=3.2e-30 Score=186.04 Aligned_cols=161 Identities=39% Similarity=0.684 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 789999999999999999999988877777766533 4566677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|++++++++.+..|...+.+.. ..+.|+++++||.|+.. .+....++...+++..+ ++++++||++|.|++++|.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999988887643 34799999999999865 34556667777777777 799999999999999999999
Q ss_pred HHHHH
Q 027918 174 ARDIK 178 (217)
Q Consensus 174 ~~~~~ 178 (217)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87654
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=2.7e-30 Score=184.03 Aligned_cols=158 Identities=57% Similarity=0.998 Sum_probs=142.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888887789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++++++.+..|+..+......+.|+++|+||+|+.. ......++.+.++...+.+++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887755799999999999853 345567888888888889999999999999999999886
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.6e-30 Score=187.07 Aligned_cols=160 Identities=37% Similarity=0.577 Sum_probs=133.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhcccCCcEEEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~ 95 (217)
||+|+|++|+|||||+++++.+.+...+.++.... +...+.+++..+.+.+||+||+.. ....+..+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999887766666655333 345567788888999999999885 3455677889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFS 172 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~ 172 (217)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++...+++..+.+|+++||++|. |++++|..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999998887754 34699999999999854 35566778888898889999999999995 99999999
Q ss_pred HHHHHH
Q 027918 173 IARDIK 178 (217)
Q Consensus 173 l~~~~~ 178 (217)
|.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 988664
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.3e-30 Score=191.54 Aligned_cols=163 Identities=30% Similarity=0.458 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc-CCcEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~ 93 (217)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+++...+.+++..+.+.+||++|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 5555655546667777888888999999999997 223344566 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++++|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999999887754 24689999999999865 3556677777888888899999999999999999999
Q ss_pred HHHHHHHHh
Q 027918 173 IARDIKQRL 181 (217)
Q Consensus 173 l~~~~~~~~ 181 (217)
|.+.+....
T Consensus 158 l~~~~~~~~ 166 (221)
T cd04148 158 IVRQIRLRR 166 (221)
T ss_pred HHHHHHhhh
Confidence 998886443
No 91
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.8e-29 Score=185.11 Aligned_cols=165 Identities=34% Similarity=0.589 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777766666554333 345667777789999999999988877777889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL 164 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (217)
|+++.++++.+. .|+..+..... +.|+++|+||+|+... .+.+..++...+++..+. .++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 59998876654 5999999999998532 233445678888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 027918 165 NVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~ 182 (217)
|++++|+++.+.+...++
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999987755443
No 92
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.6e-29 Score=186.97 Aligned_cols=161 Identities=32% Similarity=0.503 Sum_probs=132.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+++|.+|+|||||++++++..+...+.++.. +.....+.+++..+.+.|||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766656553 3445566777777899999999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+......+..+....... ..+.+++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988877654 4699999999999865334444444444333 4457899999999999999999999
Q ss_pred HHHH
Q 027918 175 RDIK 178 (217)
Q Consensus 175 ~~~~ 178 (217)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8764
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=8.9e-32 Score=177.52 Aligned_cols=163 Identities=50% Similarity=0.931 Sum_probs=150.8
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (217)
Q Consensus 19 ~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (217)
+++|++++|||.|+-++..+.+- .+..+++++++....+.++++.+++++|||.|++++++....||+++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999999887765 67789999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 98 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 98 ~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
.+..||++...|+.++..+..+.+.+.+++||+|+.+ ++.+..++.+.+++.+++|++++||++|-+++..|-.|.+.+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999999999999888888999999999966 577888999999999999999999999999999999998887
Q ss_pred HHHhc
Q 027918 178 KQRLA 182 (217)
Q Consensus 178 ~~~~~ 182 (217)
....-
T Consensus 160 ~k~~~ 164 (192)
T KOG0083|consen 160 KKLKM 164 (192)
T ss_pred HHhcc
Confidence 66543
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.9e-29 Score=179.41 Aligned_cols=161 Identities=39% Similarity=0.649 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||++++....+...+.++... .+......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 48999999999999999999998877666666543 34455677877889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ...........++..++.+++++||++|.|++++|++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887764 24799999999999865 234566667778888889999999999999999999998
Q ss_pred HHHH
Q 027918 175 RDIK 178 (217)
Q Consensus 175 ~~~~ 178 (217)
+.+.
T Consensus 159 ~~~~ 162 (164)
T cd04139 159 REIR 162 (164)
T ss_pred HHHH
Confidence 8764
No 95
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.3e-29 Score=179.88 Aligned_cols=158 Identities=41% Similarity=0.711 Sum_probs=137.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+|+|++|+|||||++++.+..+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887766666655 5555666777767899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
+++++++..+..|+..+..... .+.|+++|+||+|+.. ......+.+..++...+.+++++|++++.|++++|++|.+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 9999999999999888877654 5799999999999865 3556677888888888899999999999999999999987
Q ss_pred H
Q 027918 176 D 176 (217)
Q Consensus 176 ~ 176 (217)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=4.6e-29 Score=181.09 Aligned_cols=160 Identities=34% Similarity=0.656 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
.||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777766444 345677888889999999999999988888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|++++++++.+. .|+..+..... +.|+++|+||+|+.... ..+.....+.++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998886 48887766543 68999999999985421 22445667777777764 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDI 177 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (217)
|.|++++|++|.+..
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=8.5e-30 Score=186.24 Aligned_cols=168 Identities=21% Similarity=0.348 Sum_probs=131.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
.+||+++|++|+|||||++++....+... .++.+.......+.. ++..+.+.+|||||++.+..+|..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998877644 555555555544443 3345899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------hCCeEEEEcCCCCCCH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------YGIKFFETSAKTNLNV 166 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i 166 (217)
|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.. ....++...+... ..++++++||++|.|+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999988888887776543 24689999999999853 2233444444321 1246889999999999
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 027918 167 EQVFFSIARDIKQRLADTDS 186 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~~~~~~ 186 (217)
++++++|.+.+.+..+...+
T Consensus 159 ~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 159 QEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999876665443
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.9e-29 Score=181.93 Aligned_cols=154 Identities=21% Similarity=0.388 Sum_probs=121.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+++|++|+|||||+++|..+.+.. +.++.+.++. .+.... +.+.+||+||++.++.++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998776643 4566665543 333333 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEcCCCCCCHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE 167 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 167 (217)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ....++++.+... ..+.++++||++|.|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999998888877666543 224689999999999854 2345555555421 22578999999999999
Q ss_pred HHHHHHHH
Q 027918 168 QVFFSIAR 175 (217)
Q Consensus 168 ~l~~~l~~ 175 (217)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.2e-29 Score=180.37 Aligned_cols=156 Identities=19% Similarity=0.372 Sum_probs=125.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+++|.+|+|||||+++|.+..+.. +.+|.+..+. .+..++ +.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886654 5666554443 344444 799999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC------CeEEEEcCCCCCCHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l 169 (217)
+++++++..+..|+..+.+.. ..+.|+++|+||+|+.. ....+++..++...+ +.++++||++|.|++++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999999888886542 23589999999999853 345565655554222 36889999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 170 FFSIARDIKQR 180 (217)
Q Consensus 170 ~~~l~~~~~~~ 180 (217)
|++|.+.+.+.
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876553
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.6e-29 Score=181.87 Aligned_cols=159 Identities=19% Similarity=0.364 Sum_probs=122.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+..+||+++|++++|||||++++..+.+. .+.+|.+..+. .+..++ +.+.+||+||++.++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44589999999999999999999877665 35666665443 344544 89999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i 166 (217)
+|||+++++++..+..++..+... ...+.|++||+||+|+.+. ...++........ .+.++++||++|+|+
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence 999999999998888776666432 2236899999999998653 2333333322111 124668999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+..
T Consensus 167 ~e~~~~l~~~~~~ 179 (181)
T PLN00223 167 YEGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.6e-29 Score=183.47 Aligned_cols=156 Identities=19% Similarity=0.377 Sum_probs=121.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..+||+++|++|+|||||++++..+.+. .+.+|.+.++. .+.... +.+.+||+||+..+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999876664 35666665543 334444 799999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 167 (217)
|||++++++++....|+..+.... ..+.|++||+||+|+.+.. ..+++..... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999888877775432 2468999999999986421 2222222211 122457789999999999
Q ss_pred HHHHHHHHHH
Q 027918 168 QVFFSIARDI 177 (217)
Q Consensus 168 ~l~~~l~~~~ 177 (217)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.3e-29 Score=181.73 Aligned_cols=159 Identities=21% Similarity=0.403 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..+||+++|++|+|||||++++..+.+.. +.+|.+.++. .+...+ +.+.+||+||++.++.++..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998776654 4566654443 344444 799999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 167 (217)
|+|+++++++.....++..+... ...+.|++||+||.|+.+. ...+++.... ....+.++++||++|.|++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 99999999999888776666432 2235899999999998542 1222221111 1112457789999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 168 QVFFSIARDIKQR 180 (217)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (217)
++|++|.+.+...
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 103
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4e-28 Score=176.97 Aligned_cols=164 Identities=36% Similarity=0.595 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
.||+|+|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887666666554333 455666776788999999999999989999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|.++..+++.+..|+..+.+.. ..+.|+++|+||+|+.. .+....++...++...+++++++||+++.|+.++|.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999888886653 34689999999999864 344555667777888889999999999999999999999
Q ss_pred HHHHHHh
Q 027918 175 RDIKQRL 181 (217)
Q Consensus 175 ~~~~~~~ 181 (217)
+.+....
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 8876443
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3.1e-28 Score=175.99 Aligned_cols=158 Identities=36% Similarity=0.686 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|++|+|||||+++|.+..+...+.++.. +........++..+.+.+||+||+..+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988665566554 334455667777889999999999988888888889999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------ccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918 96 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN 163 (217)
Q Consensus 96 d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (217)
|+++++++..... |+..+..... +.|+++|+||+|+..... .+..++...++...+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999998877654 7777766554 699999999999865432 2346677778888876 9999999999
Q ss_pred CCHHHHHHHHHH
Q 027918 164 LNVEQVFFSIAR 175 (217)
Q Consensus 164 ~~i~~l~~~l~~ 175 (217)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 105
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=9.5e-29 Score=179.20 Aligned_cols=157 Identities=20% Similarity=0.365 Sum_probs=123.5
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
..+..++|+++|++|+|||||+++|.+..+. .+.++.+ +....+.+++ +.+.+||+||++.++.++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 3345689999999999999999999987543 3445544 3334455554 789999999999999899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCC
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNL 164 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 164 (217)
+++|||++++.++.....|+..+... ...+.|+++|+||+|+.+. ...+++..+.. ...++++++||++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 99999999999999888888777542 2247899999999998642 23444444442 235789999999999
Q ss_pred CHHHHHHHHHH
Q 027918 165 NVEQVFFSIAR 175 (217)
Q Consensus 165 ~i~~l~~~l~~ 175 (217)
|++++|++|.+
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.1e-28 Score=176.46 Aligned_cols=152 Identities=20% Similarity=0.422 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+++|.+|+|||||++++..+.+. .+.++.+.... .+.... +.+.+||+||++.+...+..+++++|+++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 35666665443 344443 89999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHH-HHHHH----HHhCCeEEEEcCCCCCCHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK-GQALA----DEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~l 169 (217)
|++++.+++.+..|+..+... ...+.|+++++||+|+.+. ...++ ...+. ....+.++++||++|.|++++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 999999999988877766432 2235899999999998542 12222 22221 122356789999999999999
Q ss_pred HHHHHH
Q 027918 170 FFSIAR 175 (217)
Q Consensus 170 ~~~l~~ 175 (217)
|++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1.8e-29 Score=181.33 Aligned_cols=152 Identities=21% Similarity=0.337 Sum_probs=123.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 97 (217)
|+++|++|+|||||+++|.+..+...+.++.+... ..+.. ..+.+.+||++|+..++.++..+++.+|++++|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPT--QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEee--CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999877777777776443 33333 348999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh----HHHHHHHHHhCCeEEEEcCCC------CCCHH
Q 027918 98 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT----SKGQALADEYGIKFFETSAKT------NLNVE 167 (217)
Q Consensus 98 ~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 167 (217)
+++.++.....|+..+.... .+.|+++|+||+|+.... .... ..+..++.+.++.++++||++ ++|++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 99999999988888876543 479999999999986532 2111 123455666678899999888 99999
Q ss_pred HHHHHHHH
Q 027918 168 QVFFSIAR 175 (217)
Q Consensus 168 ~l~~~l~~ 175 (217)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=8.7e-28 Score=179.97 Aligned_cols=166 Identities=33% Similarity=0.619 Sum_probs=143.1
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
+....+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34556899999999999999999988888888888998888888777778888999999999999998888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+++|||+++..++..+..|+..+.... .+.|+++++||+|+.+ ..... ....++...++.++++|+++|.|+++.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999987665 4689999999999853 22222 3345677778999999999999999999
Q ss_pred HHHHHHHHHH
Q 027918 171 FSIARDIKQR 180 (217)
Q Consensus 171 ~~l~~~~~~~ 180 (217)
.+|.+.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.2e-28 Score=174.17 Aligned_cols=160 Identities=29% Similarity=0.436 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|.+|+|||||+++|.++.+...+.++. . .......+++..+.+.+|||||...+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-P-EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-c-ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 1 22333445566689999999999888887888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHH
Q 027918 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~ 171 (217)
|++++++++.+. .|+..+..... +.|+++|+||+|+.+..... ..+....++.... ..++++||++|.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 58887876554 68999999999996533211 1233333333332 3899999999999999999
Q ss_pred HHHHHHH
Q 027918 172 SIARDIK 178 (217)
Q Consensus 172 ~l~~~~~ 178 (217)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887654
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.6e-28 Score=175.94 Aligned_cols=152 Identities=18% Similarity=0.363 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+|+++|++|+|||||+++|.+... ...+.++.+... ..+...+ +.+.+||+||+..+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445566655433 2233333 78999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 167 (217)
|++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++...... ...+.++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999888888887775532 2479999999999986422 2222222211 112468999999999999
Q ss_pred HHHHHHHH
Q 027918 168 QVFFSIAR 175 (217)
Q Consensus 168 ~l~~~l~~ 175 (217)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 111
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=176.95 Aligned_cols=164 Identities=40% Similarity=0.668 Sum_probs=150.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..+||+++|.+|+|||+|..++..+.+...+.++.+ +.+...+.+++..+.+.|+||+|++.+..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999987 6667788888989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
||+++++.||+.+..++..+.+.. ....|+++|+||+|+.. .+.+..++.+.++..++++|+++||+.+.+++++|..
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 999999999999999999995433 35689999999999976 4889999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 027918 173 IARDIKQ 179 (217)
Q Consensus 173 l~~~~~~ 179 (217)
|.+.+..
T Consensus 160 L~r~~~~ 166 (196)
T KOG0395|consen 160 LVREIRL 166 (196)
T ss_pred HHHHHHh
Confidence 9998866
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.3e-27 Score=176.12 Aligned_cols=147 Identities=21% Similarity=0.407 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-----CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
+||+++|++++|||||++++.++.+...+.+|.+.++....+.++ +..+.+.|||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877776666663 456899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCccCh----HHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKVLVGNKADMDESKRAVPT----SKGQAL 147 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~pvivv~nK~Dl~~~~~~~~~----~~~~~~ 147 (217)
+|+|||++++.+++.+..|+..+.... ..++|+++|+||.|+.+. +.... .....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence 999999999999999999999996632 246899999999998653 32332 235567
Q ss_pred HHHhCCeEEEEcCCCC
Q 027918 148 ADEYGIKFFETSAKTN 163 (217)
Q Consensus 148 ~~~~~~~~~~~Sa~~~ 163 (217)
+.+.+.+.++.++.++
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 8889999999888765
No 113
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=1.3e-27 Score=163.07 Aligned_cols=169 Identities=21% Similarity=0.354 Sum_probs=133.0
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.+...+..++|+++|..||||||++++|.+.. .....|+.+ +...++.+++ +.+++||.+|+...++.|+.||..
T Consensus 9 k~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 9 KQKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhc
Confidence 34456778999999999999999999999877 333455555 5556666766 899999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccCh---HHHHHHHHHhCCeEEEEcCCCC
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPT---SKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
+|++|+|+|.+++..++.....+..+.. ..-.+.|++|++||.|++.+-..... -..+++++...++++.||+.+|
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 9999999999999887776665555432 22236899999999998642221111 2244555667799999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
+++.+-++||++.++++.
T Consensus 164 e~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999998743
No 114
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=174.75 Aligned_cols=167 Identities=35% Similarity=0.623 Sum_probs=149.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
..+|++|||+..+|||+|+..+..+.|...+.||+. +.+...+.++ ++.+.+.+|||.|+++|+.+++..|+++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999997 6677778885 99999999999999999999988999999999
Q ss_pred EEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEc
Q 027918 93 LVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~S 159 (217)
++|++.++++++++.. |+.++..+++ +.|+|+||+|.||.++. ..+..++.+.++++.| ..|++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999776 9999999885 69999999999997432 3567788999999999 5899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc
Q 027918 160 AKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
|++..|++++|+..+.......+
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999998887765443
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=7.2e-28 Score=173.55 Aligned_cols=154 Identities=21% Similarity=0.334 Sum_probs=119.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
+|+++|++|||||||++++.+. +...+.++.+.. ...+..++ +.+.+||+||+..++.++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555666666644 33455554 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHhC--CeEEEEcCCCC------C
Q 027918 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSK---GQALADEYG--IKFFETSAKTN------L 164 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~~Sa~~~------~ 164 (217)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+......... ...++.+.+ +.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999888865432 4689999999999865321111111 122332233 57788999998 8
Q ss_pred CHHHHHHHHHH
Q 027918 165 NVEQVFFSIAR 175 (217)
Q Consensus 165 ~i~~l~~~l~~ 175 (217)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999964
No 116
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=9.2e-27 Score=168.60 Aligned_cols=144 Identities=40% Similarity=0.677 Sum_probs=127.0
Q ss_pred CCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q 027918 38 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 117 (217)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 117 (217)
+.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788899988888888888888999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 118 ~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
..+.|+++|+||+|+.. .+.+..+++..++..+++.++++||++|.|++++|++|.+.+.+...
T Consensus 83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 55789999999999964 34567778888888888999999999999999999999998876443
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.2e-27 Score=171.24 Aligned_cols=152 Identities=26% Similarity=0.471 Sum_probs=116.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
+|+++|++|+|||||+++|.+..+... .++.+..+ ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999877543 45544333 333333 33789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH------HHHhCCeEEEEcCCCCCCHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++++.++.....|+..+.+.. ..+.|+++|+||+|+... ...+++... +...+++++++||++|.|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999998888888877775432 246899999999998542 122222221 2223457999999999999999
Q ss_pred HHHHHH
Q 027918 170 FFSIAR 175 (217)
Q Consensus 170 ~~~l~~ 175 (217)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=6.8e-27 Score=169.59 Aligned_cols=153 Identities=22% Similarity=0.347 Sum_probs=118.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+++|++|+|||||++++..+.+.. +.++.+..+ ..+..++ +.+.+||+||++.+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999877664 355555443 3444554 7999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHH-HHHH----HHhCCeEEEEcCCCCCCHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++. +.+. ...+++++++||++|.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999988888777666664432 246899999999998542 222322 2221 22346799999999999999
Q ss_pred HHHHHHH
Q 027918 169 VFFSIAR 175 (217)
Q Consensus 169 l~~~l~~ 175 (217)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 119
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.9e-26 Score=167.15 Aligned_cols=157 Identities=29% Similarity=0.511 Sum_probs=125.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+++|+.|||||||++++..+.... ..||.+ +....+.+++ +.+.+||.+|+..++..|+.++.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 667999999999999999999999765443 555555 4455566676 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEcCCCCCC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLN 165 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 165 (217)
||+|+++.+.+......+..+.... -.+.|++|++||+|+.+. ...+++..... ...+.++.|||.+|+|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999988888877766665432 246999999999998653 34444444332 2346789999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDI 177 (217)
Q Consensus 166 i~~l~~~l~~~~ 177 (217)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.2e-27 Score=169.52 Aligned_cols=151 Identities=24% Similarity=0.405 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+++|++++|||||++++..+.+.. ..++.+.+. ..+...+ +.+.+||+||+..++..+..+++.++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776653 344544333 3344444 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHH----HHhCCeEEEEcCCCCCCHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALA----DEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
++++.++.....++..+.+ ....+.|+++|+||+|+.... ...+.. .+. ...+.+++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 9998887766665544432 222368999999999985421 122221 111 1122479999999999999999
Q ss_pred HHHHH
Q 027918 171 FSIAR 175 (217)
Q Consensus 171 ~~l~~ 175 (217)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99864
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=8.1e-27 Score=171.55 Aligned_cols=155 Identities=21% Similarity=0.335 Sum_probs=122.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+++|++|||||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||+..+...|..+++.++++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987764 34444443 334455665 689999999999988889999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----------------hCCeEE
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF 156 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 156 (217)
|+|+++.+++.....|+..+.... ..+.|+++|+||+|+.. ....++.+.+... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999988888888877776533 24689999999999853 3455556555532 224689
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~ 176 (217)
+|||++|.|++++|++|.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=8.3e-27 Score=167.95 Aligned_cols=152 Identities=21% Similarity=0.389 Sum_probs=117.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
+|+|+|++|+|||||+++|.+... ...+.++.+..+ ..+.+++ ..+.+||+||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122344444333 3445554 799999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCCeEEEEcCCC
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT 162 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 162 (217)
+++|+|+++++++.....|+..+.+.. ..+.|+++|+||+|+... ...++...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999988888888877775532 246899999999998542 233344444332 236899999999
Q ss_pred CCCHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIAR 175 (217)
Q Consensus 163 ~~~i~~l~~~l~~ 175 (217)
|.|+++++++|.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 123
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.3e-25 Score=173.35 Aligned_cols=144 Identities=24% Similarity=0.488 Sum_probs=122.2
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-------------CeEEEEEEeeCCCccc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQER 76 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~ 76 (217)
.+....+||+|+|+.|+|||||+++|.++.+...+.+|.+.++....+.++ +..+.+.||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 344556899999999999999999999999888888898888776666654 2458899999999999
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--Cc---c
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKVLVGNKADMDESK--RA---V 139 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~pvivv~nK~Dl~~~~--~~---~ 139 (217)
|+.++..++++++++|+|||++++.+++.+..|+..+..... .++|++||+||+||.... +. +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999987631 258999999999996432 12 3
Q ss_pred ChHHHHHHHHHhCC
Q 027918 140 PTSKGQALADEYGI 153 (217)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (217)
..++++.++.++++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 57889999998873
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.4e-26 Score=165.33 Aligned_cols=151 Identities=22% Similarity=0.410 Sum_probs=118.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
||+++|.+|+|||||++++.+.... .+.++.+.. ...+.++. +.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 334444433 34445554 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+++++++.....|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999998888877775533 3478999999999986422 2223333322 234689999999999999999
Q ss_pred HHHHH
Q 027918 171 FSIAR 175 (217)
Q Consensus 171 ~~l~~ 175 (217)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99864
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-28 Score=168.60 Aligned_cols=173 Identities=35% Similarity=0.633 Sum_probs=160.0
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
....+..+|++|+|..++||||+|++++.+.|...+..+.+.++....+.+++..+.+.+||++|++++......||+.+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 44567889999999999999999999999999999999999999888888887778999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
.+.++||+.+|+.+|+....|++.+..... .+|.++|-||+|+.+ .......+.+.+++.....++.+|+++..|+-.
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999999999988776 599999999999977 567788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 027918 169 VFFSIARDIKQRLAD 183 (217)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (217)
+|.+|+..+.++..+
T Consensus 172 vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877665
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=5.3e-26 Score=166.29 Aligned_cols=155 Identities=18% Similarity=0.262 Sum_probs=119.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+++|.+|+|||||++++.+..+.. +.++.+. ....+..++ +.+.+||+||+..++..+..++..+|++++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 34899999999999999999999876643 2333332 223344555 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEcC
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA 160 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 160 (217)
|+|+++++++.....++..+.... ..+.|+++|+||+|+.. ....+++...... ..+.++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999998888888777665432 24689999999999853 2344444433211 2246999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027918 161 KTNLNVEQVFFSIARD 176 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (217)
++|.|++++++||...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999764
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=5.6e-26 Score=163.77 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---------hhhhccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTAYYR 86 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~ 86 (217)
++|+++|.+|+|||||+++|.+..+.....+..+.+.....+..++ +.+.||||||...... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 4799999999999999999999876543333333344444444443 7999999999742110 0111112
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 87 GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
.+|++++|+|+++..+ ++....|+..+.... .+.|+++|+||+|+... ... .....+.....++++++||++|.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-~~~--~~~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF-EDL--SEIEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch-hhH--HHHHHhhhhccCceEEEEecccC
Confidence 3689999999998754 356667888776554 26899999999998542 111 12445555556899999999999
Q ss_pred CHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDI 177 (217)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (217)
|+++++++|.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.5e-25 Score=176.50 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------ccchhhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 88 (217)
..|.|+|.||||||||+++|.+........+.++.......+.+.+. ..+.+||+||..+ ....+...+..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 47999999999999999999986544444455556666666666321 4799999999643 112233355679
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
+++++|+|+++.++++.+..|..++..+.. .+.|+++|+||+|+.+. .....+..+.++...+++++++||+++.|+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 999999999988889999999999977643 36899999999998642 222333344455556689999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 027918 167 EQVFFSIARDIKQRL 181 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (217)
++++++|.+.+....
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998876543
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=6.1e-26 Score=161.62 Aligned_cols=152 Identities=22% Similarity=0.463 Sum_probs=119.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
.|+++|++|+|||||+++|.+..+...+.++.+.... .+..++ +.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999888877787765554 344444 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHHHHH
Q 027918 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ......... ....++++++|+++|.|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 999988888777766664422 2468999999999985421 112211111 1223688999999999999999
Q ss_pred HHHHH
Q 027918 171 FSIAR 175 (217)
Q Consensus 171 ~~l~~ 175 (217)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99865
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.9e-25 Score=162.63 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-------CCCCcccc------eeeeEEEE--EEEE---CCeEEEEEEeeCCCccccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIR--TIEL---DGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~-------~~~~~~~~------~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~~~~ 78 (217)
+|+++|.+++|||||+++|++.. +...+.++ .+...... .+.+ ++..+.+.||||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 11111111 12222222 2222 5556899999999999999
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---eE
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---KF 155 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 155 (217)
..+..+++.+|++|+|+|+++..+......|..... .+.|+++|+||+|+.+.. .......++...+. .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence 999999999999999999998766666665543322 368999999999985421 12233455555554 48
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 027918 156 FETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
+++||++|.|++++|++|.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998764
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.9e-25 Score=161.27 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhhc---ccCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d 89 (217)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||... .+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222223333333344442 4899999999642 22223333 34699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCC
Q 027918 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN 165 (217)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 165 (217)
++++|+|++++ .+++.+..|.+.+..... .+.|+++|+||+|+.... ...+....+... ...+++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998 788999999988876542 368999999999985422 223444455555 367899999999999
Q ss_pred HHHHHHHHHHH
Q 027918 166 VEQVFFSIARD 176 (217)
Q Consensus 166 i~~l~~~l~~~ 176 (217)
++++|++|.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.2e-24 Score=154.69 Aligned_cols=158 Identities=34% Similarity=0.497 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777887777776677777667899999999999999888889999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 95 YDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 95 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|+... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.+|.|+.+++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 998776 5555554 56666666554478999999999985422 3333333444444568999999999999999988
Q ss_pred HH
Q 027918 173 IA 174 (217)
Q Consensus 173 l~ 174 (217)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 64
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.9e-25 Score=165.02 Aligned_cols=157 Identities=19% Similarity=0.161 Sum_probs=115.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------cchhh
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT 82 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~ 82 (217)
.+..++|+|+|++|+|||||++++.+..+.....+..+.+.....+.+.+. ..+.+|||||.... ...+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999998654333333344444445555443 37999999997321 1111
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+..... ...+......+++++||++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCC
Confidence 2356899999999999988888887787777665555689999999999854211 1133444557899999999
Q ss_pred CCCHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARD 176 (217)
Q Consensus 163 ~~~i~~l~~~l~~~ 176 (217)
+.|+++++++|.+.
T Consensus 190 ~~gi~~l~~~L~~~ 203 (204)
T cd01878 190 GEGLDELLEAIEEL 203 (204)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 134
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-25 Score=154.54 Aligned_cols=160 Identities=19% Similarity=0.385 Sum_probs=127.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.....+|+++|..+|||||++.+|.-+.+-.+ .||.+... -.+.+.+ +.+++||.+|+.+++.+|++|+++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 34568999999999999999999988776655 77776444 4555555 8999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCC
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~ 165 (217)
|||+|.+|++.+...+..+..+..... .+.|+++++||.|++++-. ..++... .....+.+..|+|.+|+|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 999999999998888886666655443 5789999999999876422 2222222 122347788999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQ 179 (217)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (217)
+.|.++||.+.+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987753
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.2e-24 Score=155.96 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+.|+|+|.+|+|||||+++|.+.. +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2223334444445444555542 258999999999988776777888999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHH---hCCeEEEEcCCCCCC
Q 027918 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADE---YGIKFFETSAKTNLN 165 (217)
Q Consensus 93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 165 (217)
+|+|+++ .++.+.+ ..+... . ..|+++|+||+|+..... ....++...+... .+.+++++||++|.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333222 222222 1 248999999999864211 1112333344433 357999999999999
Q ss_pred HHHHHHHHHH
Q 027918 166 VEQVFFSIAR 175 (217)
Q Consensus 166 i~~l~~~l~~ 175 (217)
++++++.|.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=3.6e-24 Score=155.10 Aligned_cols=150 Identities=21% Similarity=0.407 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+|+|++|+|||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||+..+...+..+++.+|++++|
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 6899999999999999999999876543 3444443 333445555 6899999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--------CeEEEEcCCCCCC
Q 027918 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAKTNLN 165 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 165 (217)
+|+.+..++.....|+..+... ...+.|+++++||+|+... ...++ +....+ ++++++||++|.|
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APAEE---IAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCHHH---HHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 9999988888777776665432 2346899999999998542 11222 222222 3578999999999
Q ss_pred HHHHHHHHHH
Q 027918 166 VEQVFFSIAR 175 (217)
Q Consensus 166 i~~l~~~l~~ 175 (217)
++++|+||.+
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=157.92 Aligned_cols=168 Identities=39% Similarity=0.576 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|++|+|||||+++|.+..+...+.++.+..+........+..+++.+|||+|+++++.++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888877777666666655568999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHh---CCeEEEEc
Q 027918 95 YDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFETS 159 (217)
Q Consensus 95 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~S 159 (217)
+|..+ ..+.+....|...+......+.|+++|+||+|+..... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 44566666799898887765689999999999976431 22222222222222 33489999
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHhc
Q 027918 160 AK--TNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 160 a~--~~~~i~~l~~~l~~~~~~~~~ 182 (217)
++ ++.++.++|..+...+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhh
Confidence 99 999999999999888865443
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=2.5e-24 Score=155.08 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=110.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 59999999999999999999887766544444444444444443 12368999999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEcCCCCCCHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l 169 (217)
|+++........ .+..+.. .+.|+++|+||+|+..............+.. ...++++++|+++|.|++++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998753222221 2222332 3689999999999854211111111221111 11368999999999999999
Q ss_pred HHHHHHHH
Q 027918 170 FFSIARDI 177 (217)
Q Consensus 170 ~~~l~~~~ 177 (217)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998764
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1.3e-24 Score=160.26 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 81 (217)
-+|+++|.+++|||||+++|++ ..+...+ ..+.+.+.......+....+.+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443322 1122333333333333334789999999999999999
Q ss_pred hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCCe
Q 027918 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIK 154 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 154 (217)
..+++.+|++++|+|+++.. ......|+..+.. .+.|+++|+||+|+.........+++..+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2223334443333 3689999999999864322222334444432 23578
Q ss_pred EEEEcCCCCCCHHHH------HHHHHHHHHHHh
Q 027918 155 FFETSAKTNLNVEQV------FFSIARDIKQRL 181 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l------~~~l~~~~~~~~ 181 (217)
++++||++|.|++++ +++|++.+..+.
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~ 191 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcC
Confidence 999999999888655 455666655443
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=4.7e-24 Score=169.39 Aligned_cols=155 Identities=23% Similarity=0.224 Sum_probs=114.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 83 (217)
+..++|+++|.+|+|||||+|+|.+..+.....++.+.++....+.+.+. ..+.||||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 44589999999999999999999998755444455556666677777332 589999999972 222222 2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+... ...... .....+++++||++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHH-HhCCCCEEEEEccCC
Confidence 4788999999999999988877777776666655446899999999998542 111111 112246899999999
Q ss_pred CCHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARD 176 (217)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (217)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.9e-24 Score=151.62 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc-----cccchhhhcccCCcEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~ 91 (217)
||+++|++|+|||||+++|.+..+. +.++.+ +.+.. .+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 222222 12221 689999973 3333333 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF 170 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~ 170 (217)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ .....+..+.+++..+. +++++||++|.|++++|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999988654 2343321 249999999999854 23345666777777775 89999999999999999
Q ss_pred HHHH
Q 027918 171 FSIA 174 (217)
Q Consensus 171 ~~l~ 174 (217)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=8e-24 Score=166.70 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cchhh---hcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITT---AYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~---~~~~~~ 88 (217)
..|+|+|.||||||||+++|.+........+.++.......+.+++ ...+.|||+||..+. ..+.. ..+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5799999999999999999998654433333444455555555543 257899999997432 12222 334579
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 89 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 89 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
+++++|+|+++. ++++.+..|.+++..+.. .+.|+++|+||+|+.+. ....+..+.+....+.+++++||+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 999999999976 678888888888876542 36899999999998653 22334455566666789999999999
Q ss_pred CCHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDI 177 (217)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (217)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=2.3e-23 Score=146.81 Aligned_cols=154 Identities=52% Similarity=0.876 Sum_probs=119.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC
Q 027918 20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 20 v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (217)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444444 6666666666666789999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 99 DESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 99 ~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
++.+...+..|. ..+......+.|+++|+||+|+..............+.....++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888873 2333334457999999999998553222111113444555668999999999999999999875
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=160.89 Aligned_cols=152 Identities=16% Similarity=0.214 Sum_probs=104.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC-----------cccccchhh
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITT 82 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~ 82 (217)
..++|+++|.+|+|||||+++|.+..+.....++.+.. ...+... .+.+||||| .+.++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45799999999999999999999887665555554433 2333322 589999999 455666655
Q ss_pred hccc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027918 83 AYYR----GAMGILLVYDVTDESSF-N---------NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA 148 (217)
Q Consensus 83 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 148 (217)
.++. .++++++|+|.++...+ + ....+...+.. .+.|+++|+||+|+.+.. .+...+++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence 5554 35788888887653221 0 00112222222 368999999999985422 33455555
Q ss_pred HHhCC---------eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 149 DEYGI---------KFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 149 ~~~~~---------~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
...+. +++++||++| |+++++++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 55554 4799999999 999999999987654
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.7e-23 Score=149.25 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=110.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhccc--CCcEE
Q 027918 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--GAMGI 91 (217)
Q Consensus 20 v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~ 91 (217)
|+|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765554556666666666667776 5899999999887654 2455554 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|+|+.+++.. ..|...+... +.|+++|+||+|+.+.. ... .....+....+.+++++|+.+|.|++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~---~~~~iiv~NK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL---GLPVVVALNMIDEAEKR-GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc---CCCEEEEEehhhhcccc-cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 999999876543 2344344332 68999999999986532 222 234566777788999999999999999999
Q ss_pred HHHHH
Q 027918 172 SIARD 176 (217)
Q Consensus 172 ~l~~~ 176 (217)
+|.+.
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 98875
No 146
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.6e-24 Score=149.46 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--cC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~ 87 (217)
|+|+++|.||+|||||+|+|.+........++.+.+.....+...+ ..+.++|+||...... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987777788888888888888887 6899999999544322 223333 58
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
.|++++|+|+++.+. --++...+... +.|+++|+||+|...... ..-+...+.+..+++++.+||+++.|++
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 999999999987542 22333334433 799999999999743211 2234667778889999999999999999
Q ss_pred HHHHHH
Q 027918 168 QVFFSI 173 (217)
Q Consensus 168 ~l~~~l 173 (217)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998865
No 147
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.1e-22 Score=164.16 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccc----ccchhhh---cccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTITTA---YYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~ 87 (217)
..|+|+|.||||||||+++|++........+.++.......+.++ + ..+.|||+||... ...+... .+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 389999999999999999999876443334444555555555554 3 5899999999643 1123333 3456
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 88 AMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 88 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
++++++|+|+++. +.++++..|.+.+..+.. .+.|++||+||+|+.. ..+..+.+....+.+++++||++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~t 311 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALT 311 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCC
Confidence 9999999999864 677788888888877643 3689999999999843 23445566666668899999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027918 163 NLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (217)
+.|+++++++|.+.+....
T Consensus 312 geGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 312 GQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999998876543
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.8e-23 Score=151.61 Aligned_cols=154 Identities=23% Similarity=0.257 Sum_probs=107.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccc----ccch---hhhcccCCcEE
Q 027918 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTI---TTAYYRGAMGI 91 (217)
Q Consensus 20 v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~~d~~ 91 (217)
++|++|+|||||+++|.+........+..+.+.....+.++ + ..+.+|||||... ...+ +...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999876522222333344444445555 4 6899999999642 1222 23356789999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918 92 LLVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 92 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
++|+|+.+. .++..+..|...+..... .+.|+++|+||+|+... ...............+..++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHHHHHHHHHHhcCCCCCEEEE
Confidence 999999988 577777778777765432 26899999999998542 1111111223334445789999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (217)
||+++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.8e-23 Score=171.06 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~ 84 (217)
..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.||||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4479999999999999999999987643 34456666666666666766 5689999999763 33345567
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
++.+|++++|+|++++.+... ..|...+.. .+.|+++|+||+|+... ..+..+.+....+ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~----~~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG----EADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc----chhhHHHHhcCCC-CeEEEEcCCCC
Confidence 889999999999998765432 334444443 36899999999998532 1122222222222 45799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIKQ 179 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (217)
|++++|++|.+.+..
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=8.3e-23 Score=145.30 Aligned_cols=146 Identities=23% Similarity=0.232 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 86 (217)
++|+++|++|+|||||++++.+.... ....++.+.+.....+..++ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 23344445555555555555 67899999997655321 234667
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 8999999999998777666554432 236899999999998653221 33444578999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 167 EQVFFSIARDI 177 (217)
Q Consensus 167 ~~l~~~l~~~~ 177 (217)
++++++|...+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999987754
No 151
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-23 Score=138.83 Aligned_cols=156 Identities=21% Similarity=0.443 Sum_probs=122.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+.+|..++||||++.+|..+. +.+..+|++ +....+.+.+ +.+++||.+|+++.+.+|++||....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46899999999999999999998765 344566666 5556667766 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 167 (217)
|+|..+++.++..+.-+..+... .-.+.|++|.+||.|++++ ...+++..+.. ...|.+.++++.+|.|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999887777666644433222 2246889999999999764 34455555432 234678899999999999
Q ss_pred HHHHHHHHHH
Q 027918 168 QVFFSIARDI 177 (217)
Q Consensus 168 ~l~~~l~~~~ 177 (217)
|-|.||.+.+
T Consensus 168 eglswlsnn~ 177 (180)
T KOG0071|consen 168 EGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhhc
Confidence 9999998765
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=3.8e-23 Score=159.71 Aligned_cols=154 Identities=19% Similarity=0.101 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 87 (217)
+|+|+|.+|+|||||+|+|.+..+.. +..+.++.... ..+...+. .++.||||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987643 22232322222 22222222 5799999999754211 13346789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (217)
+|++++|+|+++..+.. ..++..+... +.|+++|+||+|+.+ ..........+....+. +++++||++|.|+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~---~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNL---KRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhc---CCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999999876553 3444444432 689999999999853 11122333344444444 7999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
++++++|.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887644
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1e-22 Score=166.19 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=118.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~ 83 (217)
...++|+++|++|+|||||+|+|++.... ....++.+.++....+.+++ ..+.+|||||...+... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 45589999999999999999999987542 34456666777777778877 57899999998654432 235
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
+++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... ....++...+.+++.+|+++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-
Confidence 77899999999999988876655 6655533 36899999999998542 12344566677899999998
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
.|++++|+.|.+.+....
T Consensus 346 ~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 LKIKALVDLLTQKINAFY 363 (442)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 699999999999887654
No 154
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=6.3e-24 Score=142.54 Aligned_cols=158 Identities=22% Similarity=0.425 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+.+.++|..+||||||+|.++.+.+.+...++.+.. ...+.-.+ +.+.+||.||+..++++|..|++..++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4789999999999999999999999998888888744 44444444 8999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+|+.+++.++-.+.-+..+.... -.++|++|++||.|++++ ....++.+- .....+..|.+|+++..+++-
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 99999887766666444443322 247999999999998663 222222111 112236789999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 169 VFFSIARDIKQ 179 (217)
Q Consensus 169 l~~~l~~~~~~ 179 (217)
+.+||+++-..
T Consensus 173 ~~~Wli~hsk~ 183 (186)
T KOG0075|consen 173 TLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHhhh
Confidence 99999987543
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.3e-22 Score=167.87 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=115.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccchh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 81 (217)
+..++|+|+|.+|+|||||+++|++.... ....++++.+.....+..++ ..+.||||||.. .+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 34689999999999999999999987643 44556666666666677777 467899999953 222221
Q ss_pred -hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHH-HHHHHhCCeEEEE
Q 027918 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ-ALADEYGIKFFET 158 (217)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 158 (217)
..+++.+|++++|+|++++.+..++. ++..+.. .+.|+|+|+||+|+.+... .....++. .+......+++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 23578999999999999987777664 3444433 3689999999999864211 11111111 1222223689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
||++|.|++++|..+.+.+...
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998877543
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.5e-22 Score=148.40 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=110.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcc----------------cceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (217)
+|+|+|.+|+|||||++.|++........ .+.+.+.....+...+ ..+.||||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 58999999999999999999876554321 1222333333344444 68999999999988888
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHH---------
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADE--------- 150 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~--------- 150 (217)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+... ......+........
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8889999999999999987654332 233333333 36899999999998642 111122333333332
Q ss_pred -----hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 151 -----YGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
...+++++||++|.|+++++++|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 347899999999999999999998875
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=7.8e-23 Score=150.58 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC----CCC---CCcccceeeeEEEEEEEEC------------CeEEEEEEeeCCCccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG----SFT---TSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~ 76 (217)
++|+++|.+++|||||+++|... .+. ....++.+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111 1112233333333333332 2247899999999876
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHH-HH-----
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQAL-AD----- 149 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~-~~----- 149 (217)
+..........+|++++|+|+.+.........+. +.... +.|+++|+||+|+.... .....++.... ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998754433333222 11211 57999999999985321 11112222221 11
Q ss_pred -HhCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 150 -EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
..+++++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 134789999999999999999999887753
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.6e-22 Score=165.82 Aligned_cols=148 Identities=25% Similarity=0.237 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 85 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 85 (217)
.++|+++|.+|+|||||+|+|.+.... ....++.+.++....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 489999999999999999999987643 44456666677777777777 67899999998754432 22367
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+..... .. ...+.+++++||++|.|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCCC
Confidence 89999999999998877765544433 23689999999999854211 11 33456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQ 179 (217)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (217)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 159
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.2e-22 Score=163.45 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cch---hhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~ 88 (217)
.+|+|+|.||||||||+++|.+........+.++.......+.+.+ ..+.|||+||.... ..+ ....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5899999999999999999998755444445555666666666666 68999999996321 111 22345779
Q ss_pred cEEEEEEeCCC----hhhHHHHHHHHHHHHHhcC-----------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918 89 MGILLVYDVTD----ESSFNNIRNWIRNIEQHAS-----------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (217)
Q Consensus 89 d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~-----------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (217)
+++|+|+|+++ ++.+.++..|..++..+.. .+.|++||+||+|+++. .. ..+.........++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~e-l~e~l~~~l~~~g~ 315 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RE-LAEFVRPELEARGW 315 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HH-HHHHHHHHHHHcCC
Confidence 99999999975 3355666666666654431 35899999999998642 11 12222333344578
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 154 KFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+++++||+++.|+++++.+|.+.+.....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999998876553
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.7e-22 Score=143.74 Aligned_cols=146 Identities=20% Similarity=0.155 Sum_probs=101.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccCCc
Q 027918 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (217)
Q Consensus 19 ~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d 89 (217)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||...+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999986422 12233334444555555555 6899999999877543 3345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQ 168 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 168 (217)
++++|+|..++.+.... .+...+... +.|+++|+||+|+.+... . .......+. +++++|+++|.|+++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~-----~-~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEED-----E-AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHH-----H-HHHHHhcCCCCeEEEecccCCCHHH
Confidence 99999999875443332 222333322 589999999999865211 1 222333455 789999999999999
Q ss_pred HHHHHHHH
Q 027918 169 VFFSIARD 176 (217)
Q Consensus 169 l~~~l~~~ 176 (217)
++++|.+.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
No 161
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=3.8e-22 Score=158.31 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=109.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchh-------hh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~ 83 (217)
...++|+++|.+|+|||||+|+|.+..+.. +..+..+.......+..++ .++.||||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887652 1222223333334455565 5789999999743 22221 12
Q ss_pred cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA 160 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 160 (217)
.+..+|++++|+|..+ ++.... .|+..+... +.|+++|+||+|+... ...++..++.... ..++++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence 4679999999999765 333333 355555443 4677889999998542 2344555555443 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 027918 161 KTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~ 181 (217)
++|.|+++++++|.+.+.+..
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCC
Confidence 999999999999988775543
No 162
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.6e-21 Score=132.00 Aligned_cols=166 Identities=27% Similarity=0.414 Sum_probs=135.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccc-cchhhhcccCCcE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAMG 90 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d~ 90 (217)
..||+|+|..++|||+++.+|+..... ..+.+|.+ +++...+.. ++.+-.+.|+||.|...+ ..+-++|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 369999999999999999999865443 33445543 455555544 444568999999998887 5577889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
+++||+..+++||+.+..+...|.+... ..+||++++||+|+.+ .+.+..+.++.|+..-.+.++++++.+...+-+.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999988887777766543 4699999999999975 6778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 027918 170 FFSIARDIKQRLA 182 (217)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (217)
|.+|...+.+...
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999988765443
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=5.3e-22 Score=161.12 Aligned_cols=158 Identities=22% Similarity=0.222 Sum_probs=113.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--cchhh------hccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYYR 86 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~ 86 (217)
.++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+.+.+. ..+.+|||+|.... ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999987765444555556666556666542 26789999997432 12222 2468
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEcCCCCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLN 165 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 165 (217)
.+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCCCC
Confidence 899999999999998877776665555554444689999999999853211 1111 1123444 58899999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQ 179 (217)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (217)
+++++++|.+.+..
T Consensus 350 IdeL~e~I~~~l~~ 363 (426)
T PRK11058 350 IPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999988754
No 164
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.3e-22 Score=138.10 Aligned_cols=114 Identities=37% Similarity=0.667 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
||+|+|++|+|||||+++|++.... ..+....+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998776 22233334445545566666666799999999998888888789999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027918 95 YDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~pvivv~nK~D 131 (217)
||++++++++.+..+ +..+..... +.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 999999999887554 555555444 599999999998
No 165
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.3e-21 Score=141.40 Aligned_cols=156 Identities=26% Similarity=0.214 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----------hhh
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~ 82 (217)
.++|+++|.+|+|||||+++|.+.... ....++.+.+.....+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999987533 22233333344444455555 4688999999643311 112
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCeEEEE
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY----GIKFFET 158 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (217)
..+..+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+..............+.... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999999886654432 2333322 268999999999986532111111122222322 3689999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (217)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=4.8e-22 Score=167.52 Aligned_cols=157 Identities=21% Similarity=0.324 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC-------CCCCcc--------cceeeeEEEEEEEE---CCeEEEEEEeeCCCccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI--------TTIGIDFKIRTIEL---DGKRIKLQIWDTAGQER 76 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~-------~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~ 76 (217)
.-+|+|+|..++|||||+++|+... +...+. .+.++......+.+ ++..+.++||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642 111111 12232222233333 45568999999999999
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--- 153 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 153 (217)
|...+..+++.+|++|+|+|+++..+..+...|...+. .+.|+++|+||+|+.... ......++...++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998766666666654433 268999999999985421 12233455555554
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 154 KFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.++++||++|.|++++|++|.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4899999999999999999988764
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=4.5e-22 Score=141.81 Aligned_cols=143 Identities=21% Similarity=0.226 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh----hhcccCCcEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL 92 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~d~~i 92 (217)
+|+++|.+|+|||||+++|.+..... ..+ ..+.+... .+|||||.......+ ...++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988653111 111 12222222 269999973222212 22368999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--eEEEEcCCCCCCHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEQVF 170 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~ 170 (217)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+.+ ...+....++...++ +++++||++|.|++++|
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 99999987764 22343332 12578999999999854 234556677777774 89999999999999999
Q ss_pred HHHHHHHHHHhc
Q 027918 171 FSIARDIKQRLA 182 (217)
Q Consensus 171 ~~l~~~~~~~~~ 182 (217)
++|.+.+.....
T Consensus 140 ~~l~~~~~~~~~ 151 (158)
T PRK15467 140 DYLASLTKQEEA 151 (158)
T ss_pred HHHHHhchhhhc
Confidence 999887755443
No 168
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-24 Score=151.11 Aligned_cols=172 Identities=34% Similarity=0.608 Sum_probs=148.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE-EEEEEeeCCCcccccchhhhcccCCcE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.+..++++|+|.-|+|||+++.++....++..+..+.+.++......++.+. +++.|||..|++++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 5788999999999999999999999988988899999998888888887654 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCC
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN 165 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (217)
.++|||.++.-+|+....|.+.+.... +...|+++..||||+..............|.+++++ .++++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999996644 234677888999998654443445677788888886 899999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 027918 166 VEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~~~ 183 (217)
++|+.+.|++.+.-.-.+
T Consensus 182 i~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQ 199 (229)
T ss_pred hhHHHHHHHHHHHhhccC
Confidence 999999999988765443
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=1.9e-21 Score=163.20 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=113.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
.+.++|+++|..++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35579999999999999999999988777655555555665555666443 27999999999999999988899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEcCCCC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN 163 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 163 (217)
+|+|+++.........+ ..+. ..+.|+++++||+|+.+. ..+......... + .+++++||++|
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 99999874322222222 2222 236899999999998542 222333332222 1 47999999999
Q ss_pred CCHHHHHHHHHH
Q 027918 164 LNVEQVFFSIAR 175 (217)
Q Consensus 164 ~~i~~l~~~l~~ 175 (217)
.|+++++++|..
T Consensus 236 eGI~eLl~~I~~ 247 (587)
T TIGR00487 236 DGIDELLDMILL 247 (587)
T ss_pred CChHHHHHhhhh
Confidence 999999999864
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=4.3e-21 Score=157.79 Aligned_cols=160 Identities=26% Similarity=0.188 Sum_probs=112.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh----------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 81 (217)
+..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++ ..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999986533 33345555555555566666 478999999975543221
Q ss_pred -hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH----hCCeE
Q 027918 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE----YGIKF 155 (217)
Q Consensus 82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~ 155 (217)
...++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+ .....++.. .+... ..+++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCce
Confidence 24678999999999999877665543 3333333 2689999999999862 111111221 12122 23789
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 156 FETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
+++||++|.|++++|+++.+.+...
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998876543
No 171
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=4.6e-22 Score=134.89 Aligned_cols=166 Identities=23% Similarity=0.497 Sum_probs=141.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
.-.+||.++|++..|||||+-++.++.+.+.+..+.+..+..+++.+.+.++.+.+||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34589999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC----hHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP----TSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|+||++.+.++..+..|+...+......+| |+|++|.|..-.-.... ...+..+++-.+.+++++|+..+.|+..
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999999887655455 56799999632211112 2335566677789999999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 169 VFFSIARDIKQ 179 (217)
Q Consensus 169 l~~~l~~~~~~ 179 (217)
+|..+...+..
T Consensus 177 IFK~vlAklFn 187 (205)
T KOG1673|consen 177 IFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHhC
Confidence 99988877754
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.9e-21 Score=155.20 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 88 (217)
..|.|+|.||||||||+|+|.+........+.+|.......+...+. ..+.|+||||..+-. ......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 38999999999999999999987655444555555555555555432 369999999964311 1122356789
Q ss_pred cEEEEEEeCC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCC
Q 027918 89 MGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK 161 (217)
Q Consensus 89 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 161 (217)
+++++|+|++ +.+.++.+..|++.+..+.. .+.|+++|+||+|+... ....+.+..+....+ .+++.+||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999988 45667777888888876542 25799999999998542 112334445555444 378999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 027918 162 TNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~ 181 (217)
++.|++++++.|.+.+.+..
T Consensus 317 tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCc
Confidence 99999999999998886543
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=1.5e-21 Score=167.45 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=114.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
..+.+.|+|+|..++|||||+++|.+..+......+.+.+.....+.+++ ..++||||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 35668999999999999999999998777655455555555555666665 5799999999999999998889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhC--CeEEEEcCCCCCCH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ---ALADEYG--IKFFETSAKTNLNV 166 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~~i 166 (217)
|+|||+++.........| ......++|+||++||+|+.+........++. .++..++ ++++++||++|.|+
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999999874322222222 22222368999999999985421111111111 1122333 68999999999999
Q ss_pred HHHHHHHHH
Q 027918 167 EQVFFSIAR 175 (217)
Q Consensus 167 ~~l~~~l~~ 175 (217)
+++|++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999875
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.88 E-value=1.3e-21 Score=166.57 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=112.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeE--EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
...+.|+|+|..++|||||+++|.+..+......+.+.+. +...+..++....+.||||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4567999999999999999999998766544443333332 33333333344799999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhC--CeEEEEcCCCCCC
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLN 165 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~ 165 (217)
+|+|+|+++.........| ..+ ...+.|+|+++||+|+.........+.+..+ ...++ ++++++||++|.|
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 9999999875332222222 122 2236899999999998642111111111111 22233 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDI 177 (217)
Q Consensus 166 i~~l~~~l~~~~ 177 (217)
+++++++|....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999987653
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=1.1e-21 Score=144.00 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=110.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------------CcccceeeeEEEEEEE--ECCeEEEEEEeeCCC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG 73 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G 73 (217)
+.++|+|+|+.++|||||+.+|+...... ......+.......+. .++ ..++|+|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence 56899999999999999999998543211 1122334444455555 444 7999999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh-
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADEY- 151 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~~- 151 (217)
+..|.......+..+|++|+|+|+.++-... ....+..+... +.|+++|+||+|+.........+++. .+.+..
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 9998888888899999999999998764432 22333334433 68999999999986211111112222 333333
Q ss_pred -----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 152 -----GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 152 -----~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.++++++||.+|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988763
No 176
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.2e-21 Score=142.72 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=97.6
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cc
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RF 77 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~ 77 (217)
.+.+....++|+|+|.+|+|||||+++|.+..+.....++.+.......+..++ .+.+|||||.. .+
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence 355557778999999999999999999998753322222222222222233333 68999999953 23
Q ss_pred cchhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-
Q 027918 78 RTITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG- 152 (217)
Q Consensus 78 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~- 152 (217)
..+...+++ .++++++|+|++++-+..+. .++..+.. .+.|+++|+||+|+.... .....++++......+
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 333334444 35799999999876544433 22333433 268999999999985421 1122344444444443
Q ss_pred -CeEEEEcCCCCCCHH
Q 027918 153 -IKFFETSAKTNLNVE 167 (217)
Q Consensus 153 -~~~~~~Sa~~~~~i~ 167 (217)
+.++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 589999999999973
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=2.7e-21 Score=142.77 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccch
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 80 (217)
..+..++|+|+|.+|+|||||+++|.+..+.....++.+.+........+ ..+.||||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34567899999999999999999999875433333333322222222222 589999999942 33333
Q ss_pred hhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEE
Q 027918 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFF 156 (217)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (217)
...+++. .+++++++|..++.+.... .+...+.. .+.|+++++||+|+.+... ....+.+..+......+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4444543 4678888888765443221 11222222 2689999999999854211 1112223344443357899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
++||++|.|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999987764
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=3.3e-21 Score=158.43 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=109.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhcccC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~ 87 (217)
+|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987643 33345556666666677777 579999999963 344455667889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (217)
+|++++|+|+.++.+..+ ..+...+.+. +.|+++|+||+|+..... ...++ ...+. +++++||.+|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~-----~~~~~-~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDA-----VAAEF-YSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccc-----cHHHH-HhcCCCCeEEEeCCcCCCh
Confidence 999999999987544332 1223333332 689999999999854221 12222 34555 7999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++++++.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999998877643
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=6.2e-21 Score=160.70 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+.|+++|.+++|||||+++|.+.. +.+...++.+.+.....+..++ ..+.|||+||++.|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999733 3344556667777666677766 78999999999999888888889999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHh----CCeEEEEcCCCC
Q 027918 93 LVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEY----GIKFFETSAKTN 163 (217)
Q Consensus 93 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~ 163 (217)
+|+|++++ .+.+.+. .+... ++| +++|+||+|+.+... ....+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 99999883 4443332 22222 567 999999999865221 11233455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDIKQ 179 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~ 179 (217)
.|++++++.|...+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999988776644
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=6.5e-21 Score=141.23 Aligned_cols=117 Identities=19% Similarity=0.396 Sum_probs=88.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC-cEEEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY 95 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~ 95 (217)
+|+++|++|+|||+|+++|....+..++.++ ............+....+.|||+||+.+++..+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6999999999999999999998776665443 2222222222112336899999999999998888899998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027918 96 DVTDE-SSFNNIRNWIRNIEQH---ASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 96 d~~~~-~s~~~~~~~~~~l~~~---~~~~~pvivv~nK~Dl~~ 134 (217)
|+.+. .++..+..|+..+... ...+.|+++|+||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6677766665544322 124799999999999864
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=3.8e-21 Score=142.66 Aligned_cols=160 Identities=17% Similarity=0.171 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEEEEC---------------------------C----
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELD---------------------------G---- 61 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (217)
++|+++|..|+|||||+..+.+... ........+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 11111111111111111110 1
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVP 140 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~ 140 (217)
....+.||||||++.+...+...+..+|++++|+|++++.........+..+.... ..|+++|+||+|+..... ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 11579999999999888877778889999999999987421111111222222221 247899999999854211 111
Q ss_pred hHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 141 TSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
.+.++.+.... +++++++||++|.|+++++++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 23333333332 56899999999999999999988654
No 182
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=1.1e-20 Score=135.54 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 86 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 86 (217)
..+|+++|.+|+|||||++++.+..+........+........ .......+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999876542222111111111111 222236899999999654322 2344578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLN 165 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (217)
.+|++++|+|+.++.+ .....+...+... +.|+++|+||+|+... .....+....+..... .+++.+|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 8999999999988622 1122233333332 5799999999998642 2222333444444443 6899999999999
Q ss_pred HHHHHHHHHHH
Q 027918 166 VEQVFFSIARD 176 (217)
Q Consensus 166 i~~l~~~l~~~ 176 (217)
++++++.|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=2.2e-20 Score=161.27 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=110.4
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchh
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT 81 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~ 81 (217)
......+|+|+|.+|+|||||+|+|++.... ....++.+.+.......+++ ..+.+|||||... +....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~ 348 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA 348 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence 3445578999999999999999999987543 33455666666655566666 5799999999653 23344
Q ss_pred hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcC
Q 027918 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA 160 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (217)
..++..+|++++|+|+.+.-... -..|...+.. .+.|+++|+||+|+... ......+. ..+. ..+++||
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~-----~~~~~~~~-~lg~~~~~~iSA 418 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS-----EYDAAEFW-KLGLGEPYPISA 418 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc-----hhhHHHHH-HcCCCCeEEEEC
Confidence 55788999999999997642211 1234555543 36899999999997531 11122222 2232 4579999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 027918 161 KTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (217)
++|.|+++++++|.+.+..
T Consensus 419 ~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCchHHHHHHHHhccc
Confidence 9999999999999988744
No 184
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.2e-20 Score=147.61 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc--------chhhhcccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~ 87 (217)
-.|+|+|.+|||||||+|+|++..+........++......+...+ ...+.++||||..... ......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999876533222222222222222222 2689999999964422 223346688
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 166 (217)
+|++++|+|+++..+ .....++..+.. .+.|+++|+||+|+... ..........+....+ ..++++||+++.|+
T Consensus 85 ~D~il~vvd~~~~~~-~~~~~i~~~l~~---~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 85 VDLVLFVVDADEKIG-PGDEFILEKLKK---VKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred CCEEEEEEeCCCCCC-hhHHHHHHHHhh---cCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 999999999987322 112223333332 25899999999998531 1222334444444444 58999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
++++++|.+.+.+
T Consensus 160 ~~L~~~L~~~l~~ 172 (292)
T PRK00089 160 DELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887743
No 185
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-21 Score=134.70 Aligned_cols=163 Identities=24% Similarity=0.372 Sum_probs=121.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC------CCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG------SFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 86 (217)
..+.|+|+|..+||||||+.++... ..+ ..-.++++. ..-++..++ ..+.+||.+|++..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 3478999999999999999987542 111 122344443 334444444 68999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH---hCCeEEEEcCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---YGIKFFETSAKT 162 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~ 162 (217)
.+|++|++||+++++.++.....+..+... .-.+.|+++.+||.|+.+.............+.. ...++.++||.+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhh
Confidence 999999999999999888877766655433 3358999999999998653222222222222222 236899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~ 180 (217)
|+|+++..+|+...+..+
T Consensus 172 gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccHHHHHHHHHHHHhhc
Confidence 999999999999988766
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.9e-20 Score=154.12 Aligned_cols=146 Identities=22% Similarity=0.220 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 86 (217)
++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987643 33345555666666677777 7899999999876 2333455778
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918 87 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (217)
.+|++++|+|+.++.+.. .+..|+. .. +.|+++|+||+|+.. ......++ ...++ .++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~-----~~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPD-----EEADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCcc-----chhhHHHH-HhcCCCCCEEEEeeCC
Confidence 999999999998754432 2333332 22 689999999999643 11223333 34455 4899999999
Q ss_pred CCHHHHHHHHHH
Q 027918 164 LNVEQVFFSIAR 175 (217)
Q Consensus 164 ~~i~~l~~~l~~ 175 (217)
.|++++++.+..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999887
No 187
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.2e-21 Score=134.48 Aligned_cols=185 Identities=26% Similarity=0.501 Sum_probs=152.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
-..++++++|+.|.||||++++.+.+.+..++.++.+.+.+...+.-+...+++..|||.|++.+..+...++-....+|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45689999999999999999999999999999999999998887776666799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
++||+..+-++.++..|...+.+.+. ++||++.+||.|..+. . .....-.+.+..++.|++.|++.+.|+..-|.|
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r--~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR--K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc--c-cccccceeeecccceeEEeecccccccccchHH
Confidence 99999999999999999999988876 5999999999997442 1 233334556677789999999999999999999
Q ss_pred HHHHHHHHhccc---CCCCCCCccccCCCCCC
Q 027918 173 IARDIKQRLADT---DSRSEPSTIKINQPDQA 201 (217)
Q Consensus 173 l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 201 (217)
+.+.+.....-. +....|..+.++...+.
T Consensus 164 LarKl~G~p~Lefva~paLaPpev~~d~~~~~ 195 (216)
T KOG0096|consen 164 LARKLTGDPSLEFVAMPALAPPEVIMDYWLQR 195 (216)
T ss_pred HhhhhcCCCCeEEEeccccCCCeeeccchhhH
Confidence 998886543322 23334444555444433
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.7e-20 Score=158.23 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=110.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch------hhhcc--cCCcEEEE
Q 027918 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (217)
Q Consensus 22 G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~ 93 (217)
|.+|+|||||+|+|.+........++.+.+.....+..++ ..+.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999877666677777777777777776 46899999998876543 33333 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|+|+++.+. ...+...+.+ .+.|+++|+||+|+.+. ... ..+.+.+.+..+++++++||++|.|++++++++
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 999987432 2223333322 36899999999998542 222 234677788889999999999999999999999
Q ss_pred HHHH
Q 027918 174 ARDI 177 (217)
Q Consensus 174 ~~~~ 177 (217)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8753
No 189
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=7.7e-21 Score=150.78 Aligned_cols=179 Identities=17% Similarity=0.122 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc---------chhhhcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY 85 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~ 85 (217)
..|+|+|.||+|||||+|+|.+.... ....+++|.+..+....+.+ ..+.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998766 66688888888888888887 569999999966432 2344577
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 86 RGAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
..||+++||+|....-+. +.+..| ++.. +.|+++|+||+|... ..+...+|...---.++.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~---Lr~~---~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKI---LRRS---KKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHH---HHhc---CCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence 899999999999775432 223333 3322 589999999999532 223333443333348899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCC--CCCCccccCCCCCCCCCCCCc
Q 027918 164 LNVEQVFFSIARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQAA 208 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 208 (217)
.|+.++++.++..+. ........ .++.++.+-.....++++.-+
T Consensus 151 ~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN 196 (444)
T COG1160 151 RGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLIN 196 (444)
T ss_pred cCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHH
Confidence 999999999999885 22221222 356788888888877776544
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.2e-20 Score=159.22 Aligned_cols=160 Identities=24% Similarity=0.310 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC--CC-----CC--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FT-----TS--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~-----~~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 74 (217)
++.-+|+|+|..++|||||+.+|+... +. .. .....++......+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 445689999999999999999998631 11 00 1122222222222322 445689999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 153 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (217)
..+...+..+++.+|++|+|+|++++....+...|..... .+.|+++|+||+|+.... ......++....++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999998765555555543322 268999999999985421 12223344444554
Q ss_pred --eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 154 --KFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
.++.+||++|.|+++++++|.+.+..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 48999999999999999999887754
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.7e-20 Score=133.28 Aligned_cols=152 Identities=19% Similarity=0.136 Sum_probs=104.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-------hhhhcccCCcEE
Q 027918 20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI 91 (217)
Q Consensus 20 v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~ 91 (217)
|+|++|+|||||++++.+.... .....+.+............ ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986554 33444444444444444432 25899999999776543 334577899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH--HHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|+|+.+........ +...... .+.|+++|+||+|+.......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999887655554 3333332 368999999999986532111111 112223334578999999999999999
Q ss_pred HHHHHHH
Q 027918 170 FFSIARD 176 (217)
Q Consensus 170 ~~~l~~~ 176 (217)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 192
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=141.76 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhcccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 87 (217)
--|+|+|.||+|||||+|+|.+.+.+-.+....++......+...+ ..++.|+||||..+ +.......+.+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 4699999999999999999999988765555555555555554443 36999999999433 22333456789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 166 (217)
+|+++||+|++++-.. .....++.+.. .+.|+++++||+|........ ......+..... ..++++||.+|.|+
T Consensus 86 vDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 86 VDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred CcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccCCH
Confidence 9999999999874332 22334444544 257999999999986532211 222222222222 48999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQR 180 (217)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (217)
+.+.+.+...+.+.
T Consensus 161 ~~L~~~i~~~Lpeg 174 (298)
T COG1159 161 DTLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999998887654
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=5e-20 Score=151.68 Aligned_cols=160 Identities=26% Similarity=0.206 Sum_probs=110.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-----------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 80 (217)
...++|+|+|.+|+|||||+++|++... .....++.+.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3469999999999999999999997653 334455555555555555566 57889999996432211
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----hCCeEE
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YGIKFF 156 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (217)
...+++.+|++++|+|++++.+..+.. +...+.. .+.|+++|+||+|+.+.. ...+....+... ..++++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence 123678899999999999876655443 3333333 268999999999986311 111111122221 236899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
++||++|.|++++++.+.+.+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988766543
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=3.5e-20 Score=160.08 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=111.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccch-h
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T 81 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~ 81 (217)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.||||||..+ |..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987643 33445555666666666777 4677999999542 1111 1
Q ss_pred hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-HHHHh----CCeEE
Q 027918 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-LADEY----GIKFF 156 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-~~~~~----~~~~~ 156 (217)
...++.+|++++|+|++++.+..+... +..+.. .+.|+++|+||+|+.+... .+..+. +.... ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence 234688999999999998877766543 333333 3689999999999854211 122221 11111 24779
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
++||++|.|++++++.+.+.+.+.
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998887653
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=1e-19 Score=156.90 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch----------hhhc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~ 84 (217)
.++|+++|.+|+|||||+|+|.+........++.+.+.....+..++ ..+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 47899999999999999999998766555556666666555555544 68999999998776431 1223
Q ss_pred c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
+ ..+|++++|+|+++.+.. ..|...+.+. +.|+++|+||+|+.+. .. ...+.+.+.+..+++++++|+++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEeec
Confidence 2 479999999999886532 2344444443 6899999999998542 22 23456777888899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDI 177 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (217)
|+|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999998887654
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=126.84 Aligned_cols=155 Identities=23% Similarity=0.342 Sum_probs=118.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC--------CCC----cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF--------TTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (217)
-...||+|+|+.++||||+++.+..... ... ...|+.+++..... ++. ..+++++||||++++.+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~~-~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DED-TGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cCc-ceEEEecCCCcHHHHHH
Confidence 3457999999999999999999988653 111 12344444433332 222 48999999999999999
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEE
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFET 158 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (217)
|..+.+.+.++|+++|.+.+..+ +....++.+....+ +|++|++||.||.+ ..+.+.+.++.... ..+.+..
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeee
Confidence 99999999999999999999887 55555555555432 89999999999965 34556666665544 7899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (217)
+|.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988877654
No 197
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=125.86 Aligned_cols=160 Identities=23% Similarity=0.353 Sum_probs=119.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+++|..++|||||+..|.+.... ...+|.+ +....+..++. +.+++||.+|+...+..|..||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence 55699999999999999999999986543 2345544 55566666654 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH--HHHhCCeEEEEcCCCCCCHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
||+|.+|...|+++..-+.++. ...-..+|+.|..||.|+..............+ .+...+.+-+||+..++|+..-
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 9999999888887777555443 333346999999999997442221111111111 2223378889999999999988
Q ss_pred HHHHHHH
Q 027918 170 FFSIARD 176 (217)
Q Consensus 170 ~~~l~~~ 176 (217)
.+|+...
T Consensus 171 ~~wv~sn 177 (185)
T KOG0074|consen 171 SDWVQSN 177 (185)
T ss_pred chhhhcC
Confidence 8887653
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.84 E-value=4.6e-19 Score=133.85 Aligned_cols=151 Identities=22% Similarity=0.196 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 89 (217)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333334444455555566666 689999999975432 12345788999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHH-----------------------------------------HHHHh-----------
Q 027918 90 GILLVYDVTDES-SFNNIRNWIR-----------------------------------------NIEQH----------- 116 (217)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~-----------------------------------------~l~~~----------- 116 (217)
++++|+|+++++ ....+...+. .+..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 2222222211 01111
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 117 -----------A--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 117 -----------~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
. ....|+++|+||+|+.. .++...++.. ..++++||++|.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 11368999999999843 3444444443 4689999999999999999988754
No 199
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=143.48 Aligned_cols=154 Identities=23% Similarity=0.218 Sum_probs=117.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 84 (217)
.-++|+++|.||+|||||+|.|++.... .+..+++|.++-...+.++| +.+.++||+|..+..... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3489999999999999999999998765 78899999999999999999 899999999977544332 336
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
+.++|.+++|+|.+.+.+-.+... +. ....+.|+++|.||.|+...... ..+....+.+++.+|+++|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGE 362 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCcc
Confidence 688999999999998632222221 11 23346899999999999653221 11122233578999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIKQR 180 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (217)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999988887665
No 200
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.6e-21 Score=127.66 Aligned_cols=159 Identities=22% Similarity=0.389 Sum_probs=115.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+...+|+++|..|+|||+++.++.-..... ..|+.+ +....+...+ .++++||.+|+-..+..|+.||.+.+++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence 366899999999999999999887655443 344444 3334444544 89999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i 166 (217)
||+|.+|.+.+......+ ..+....-.+..+++++||.|.+.. ....+.... .+..-+.++.+||.+|+|+
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl 167 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL 167 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh---hhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence 999999987665555433 3332221124667888999997542 111211111 1222378999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
++.++||.+.+.+
T Consensus 168 d~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 168 DPAMDWLQRPLKS 180 (182)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999988754
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=2.9e-19 Score=150.33 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=111.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 79 (217)
..-+|+|+|..++|||||+++|+. +.+.... ....+..+......+......+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 2222211 12223334333333333448999999999999999
Q ss_pred hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hC
Q 027918 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YG 152 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~ 152 (217)
.+..+++.+|++++|+|+.+..... ...++..+.. .++|+++|+||+|+.........+++..+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998754322 2333333333 26899999999998654333333334443322 34
Q ss_pred CeEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 027918 153 IKFFETSAKTNL----------NVEQVFFSIARDIK 178 (217)
Q Consensus 153 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (217)
++++.+||.+|. ++..+++.|++.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 789999999997 57888887777664
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.1e-19 Score=148.89 Aligned_cols=155 Identities=21% Similarity=0.134 Sum_probs=103.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCcccceeeeEEEEEEEEC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELD 60 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 60 (217)
....++|+++|.+++|||||+++|+...-. ....++.+.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356799999999999999999999843211 1123455555555555555
Q ss_pred CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKRA- 138 (217)
Q Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~- 138 (217)
+ ..+.||||||++.|.......+..+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+......
T Consensus 83 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 83 K--YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred C--eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHH
Confidence 4 789999999998877655566789999999999987211111 11222222222 1 2468999999998642111
Q ss_pred --cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918 139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~ 170 (217)
...+++..+....+ ++++++||++|.|+++..
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12234455555444 579999999999998754
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.1e-19 Score=148.85 Aligned_cols=154 Identities=19% Similarity=0.102 Sum_probs=105.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCC-----------------------------CCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|..++|||||+.+|+.. ... .....+.+.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45689999999999999999999852 111 11233555556555555555
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHH--HHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKVLVGNKADMDESKRA- 138 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~--~l~~~~~~~~pvivv~nK~Dl~~~~~~- 138 (217)
+.+.|||+||++.|.......+..+|++++|+|++++++.. ...+.. .+..... ..|+++|+||+|+.+....
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 78999999999988766666778999999999999875321 111111 1222222 3578999999998542111
Q ss_pred --cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918 139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~ 170 (217)
....++..++...+ ++++++||++|.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12345556666554 579999999999998744
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=2.8e-19 Score=150.56 Aligned_cols=156 Identities=20% Similarity=0.259 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC--CCCCC--------------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG--SFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (217)
+|+|+|..++|||||+++|+.. .+... .....++......+.+++ .+++||||||+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 7999999999999999999862 22111 122333333444455555 79999999999999988
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCC
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGI 153 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~ 153 (217)
+..+++.+|++++|+|+.+.. ......|+..+... ++|+++|+||+|+.+.......+++..+.. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 999999999999999998743 23344555555543 689999999999865322222233333332 2346
Q ss_pred eEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 027918 154 KFFETSAKTNL----------NVEQVFFSIARDIK 178 (217)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (217)
+++.+||++|. |+..+|+.|.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999995 79999998888764
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=4.4e-19 Score=148.86 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------------CeEEEEEEeeCCCcccccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT 79 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~~~ 79 (217)
+-|+|+|.+++|||||+++|.+..+......+.+.+.....+..+ .....+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 579999999999999999999876653322222211111111111 0012389999999999999
Q ss_pred hhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----------ChHHH-
Q 027918 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-----------PTSKG- 144 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-----------~~~~~- 144 (217)
++..+++.+|++++|+|+++ +.+++.+. .+.. .+.|+++++||+|+....... ..+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999987 34443332 2222 268999999999985311000 00000
Q ss_pred -----------HHHHH------------Hh--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 145 -----------QALAD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 145 -----------~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
..+.. .. .++++++||++|+|+++++++|.....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 01110 11 268999999999999999998865443
No 206
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=2.1e-19 Score=123.22 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----cccchhhhcccCCcEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL 92 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i 92 (217)
||+++|+.|||||||+++|.+... .+..|..+.+. + .++||||.. .+.........++|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998654 33344332221 1 237999943 33333444556999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~ 171 (217)
++.|++++.+. +-..+...+ +.|+|-|+||+|+.. .....+.++.+.+..|+ .+|.+|+.+|+|+++|.+
T Consensus 69 ll~dat~~~~~-----~pP~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSV-----FPPGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCcc-----CCchhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 99999986542 111223333 579999999999863 23355667777788786 689999999999999999
Q ss_pred HHH
Q 027918 172 SIA 174 (217)
Q Consensus 172 ~l~ 174 (217)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2.8e-19 Score=133.11 Aligned_cols=148 Identities=23% Similarity=0.141 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------cccceeeeEEEEEEEECCeEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK 65 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 65 (217)
+|+|+|.+|+|||||+++|+...-... .....+.+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999975321111 113334444444444554 58
Q ss_pred EEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---cChH
Q 027918 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA---VPTS 142 (217)
Q Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~ 142 (217)
+.||||||+..+.......++.+|++++|+|++++..-... .....+... . ..++|+|+||+|+...... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 89999999988776666778899999999999875322221 222222222 1 2457889999998542211 1123
Q ss_pred HHHHHHHHhC---CeEEEEcCCCCCCHHHH
Q 027918 143 KGQALADEYG---IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 143 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~l 169 (217)
+.+.+....+ .+++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3444455555 45899999999998753
No 208
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=6.7e-19 Score=126.47 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccchhhhccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~ 86 (217)
+|+++|.+|+|||||++.+.+........++.+.......+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996444433333333333333333333 899999999543 2333333443
Q ss_pred ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHH--HhCCeEEEE
Q 027918 87 ---GAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALAD--EYGIKFFET 158 (217)
Q Consensus 87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 158 (217)
..+++++++|.....+. ..+..|+ ... +.|+++|+||+|+..... ............ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45788899998765322 2233333 222 479999999999843211 111122222222 234689999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (217)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998765
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=2.5e-18 Score=130.07 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--------C----------CcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
+|+++|..|+|||||+++|+...-. . ......+.......+..++ .++.+|||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 5899999999999999999763110 0 0111222333334444555 789999999999998
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..+..+++.+|++++|+|+.+.... ....++..+... +.|+++|+||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 8888899999999999999886443 334455545443 689999999999864
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=4.2e-18 Score=135.34 Aligned_cols=160 Identities=28% Similarity=0.226 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccc-hh
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRT-IT 81 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~~ 81 (217)
..++|+|+|.||+|||||+|+|++..-. ....++++.+.-...+..++ -.+.++||.|..+ |.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999987644 55667777777777777777 6899999999442 222 12
Q ss_pred hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH---hC-CeEE
Q 027918 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE---YG-IKFF 156 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~---~~-~~~~ 156 (217)
...+..++++++|+|+..+-+-.+.+ ....+.+. +.+++||+||+|+.+. .....++.+ .+.+. .+ .+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~---g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA---GRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc---CCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence 33567899999999998876543332 23333333 6899999999998653 212222221 22222 22 5899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
++||.+|.++.++|+.+...+...
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHh
Confidence 999999999999999988777654
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.80 E-value=9.1e-19 Score=142.42 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=104.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEE--------------EE----CC------eEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTI--------------EL----DG------KRIKL 66 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~~ 66 (217)
..++|+++|..++|||||++.|.+..... ......+.......+ .. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997532211 111111111110000 00 11 13579
Q ss_pred EEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHH
Q 027918 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQ 145 (217)
Q Consensus 67 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~ 145 (217)
.+||+||++.|...+......+|++++|+|++++.........+..+.... ..|+++|+||+|+.+.... ...+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 999999999998888888888999999999986431111222222232221 2468999999998642111 1123334
Q ss_pred HHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 146 ALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 146 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.+.... +++++++||++|.|+++++++|...+.
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 444332 578999999999999999999887653
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.80 E-value=5e-19 Score=132.74 Aligned_cols=146 Identities=17% Similarity=0.097 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEEECCeEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK 65 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (217)
+|+++|..++|||||+.+|+...- ........+.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999864210 011123334444445555555 78
Q ss_pred EEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--
Q 027918 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-- 136 (217)
Q Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-- 136 (217)
+.+|||||+..+...+...++.+|++++|+|+++.. .......| ...... . ..|+++|+||+|+....
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEcccccccccc
Confidence 999999999887776777778899999999998742 11122222 222222 1 36899999999986321
Q ss_pred Cc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHH
Q 027918 137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVE 167 (217)
Q Consensus 137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~ 167 (217)
.. ...+++..+....+ ++++++||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 11222333333432 679999999999987
No 213
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=2.3e-18 Score=134.90 Aligned_cols=165 Identities=21% Similarity=0.174 Sum_probs=125.4
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccc
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRT 79 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~ 79 (217)
+......+.|.++|.+|||||||+|.|.+........-+.+.+.....+.+.+. ..+.+.||-|.-. |++
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHH
Confidence 334456789999999999999999999988777666677778888888888643 4889999999432 222
Q ss_pred hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
. ......+|++++|+|++++...+.+....+.+........|+|+|.||+|+..+.. .......... ..+.+|
T Consensus 265 T-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iS 337 (411)
T COG2262 265 T-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFIS 337 (411)
T ss_pred H-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEE
Confidence 2 22346899999999999998888888877778777666799999999999754222 1111111112 589999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh
Q 027918 160 AKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (217)
|++|.|++.+++.|.+.+....
T Consensus 338 A~~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 338 AKTGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred eccCcCHHHHHHHHHHHhhhcc
Confidence 9999999999999998887543
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=4.5e-18 Score=124.93 Aligned_cols=147 Identities=20% Similarity=0.157 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
.++|+++|..++|||||+++|++... .....+..+.+.....+..+ ...+.|+||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHHHHH
Confidence 48999999999999999999976310 01112333333333333333 3688999999998887
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC---
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEYG--- 152 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--- 152 (217)
......+..+|++++|+|+...-... ....+..+... +.| +|+++||+|+...... ...+++..+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 77777788999999999998653222 22233334433 566 7889999998532111 11233444444443
Q ss_pred --CeEEEEcCCCCCCHH
Q 027918 153 --IKFFETSAKTNLNVE 167 (217)
Q Consensus 153 --~~~~~~Sa~~~~~i~ 167 (217)
++++++||.+|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 689999999998853
No 215
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=2.6e-18 Score=130.03 Aligned_cols=155 Identities=19% Similarity=0.239 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----h---hhhcccCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----I---TTAYYRGAM 89 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~d 89 (217)
.|.+||.||||||||++.|...+-.......+|.....-.+.+++.. .+++-|.||.-+-.. + ....+..+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 68899999999999999999887666666777777777777776643 599999999543211 2 233456799
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918 90 GILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (217)
Q Consensus 90 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (217)
.++||+|++.. ..++.+..+..++..+.. .+.|.+||+||+|+++. ....++++++...- .++++||+.+
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999988 777887777777766543 36899999999998532 22335677777664 5999999999
Q ss_pred CCHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARD 176 (217)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (217)
+++.++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999888754
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.79 E-value=1.5e-18 Score=141.16 Aligned_cols=163 Identities=16% Similarity=0.183 Sum_probs=102.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEEE------------------C--C----eEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIEL------------------D--G----KRI 64 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~~ 64 (217)
....++|+++|..++|||||+..|.+.... .......+.........+ + + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456699999999999999999999653211 111122222221110000 0 0 125
Q ss_pred EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027918 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS 142 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~ 142 (217)
.+.||||||+..|..........+|++++|+|++++. ....... +..+.... ..|+++|+||+|+.+.... ...+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDIIG--IKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHcC--CCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999887766655666789999999998643 1121121 22222221 2468999999998652211 1123
Q ss_pred HHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 143 KGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 143 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
++..++... +.+++++||++|.|++++++.|.+.+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444332 47899999999999999999988765
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=4.8e-18 Score=143.09 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=101.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeE--EEEEEEE----CCeEE----------EEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIEL----DGKRI----------KLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----------~~~l~Dt~G~~~ 76 (217)
.+.+.|+++|.+++|||||+++|.+...........+.+. +...... .+... .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3456899999999999999999987654322222111111 1111110 01111 278999999999
Q ss_pred ccchhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-C------------
Q 027918 77 FRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-P------------ 140 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~------------ 140 (217)
|..++...++.+|++++|+|+++ +.+++.+.. +.. .+.|+++++||+|+....... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99988888899999999999987 445444332 222 268999999999984211000 0
Q ss_pred --hH-------HHHHHHHH---------------hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 141 --TS-------KGQALADE---------------YGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 141 --~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
.+ +...+... ..++++++||.+|.|++++++.+....
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 00011111 126799999999999999998876544
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=5.7e-18 Score=143.33 Aligned_cols=154 Identities=20% Similarity=0.186 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
-|.++|..++|||||+++|.+.. +.+....+.+++.....+...+. ..+.|||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 58899999999999999998633 33334445555554444433222 368999999999887767777889999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHhC---CeEEEEcCCCCCC
Q 027918 94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNLN 165 (217)
Q Consensus 94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~ 165 (217)
|+|+++. .+.+.+ ..+... +.| ++||+||+|+.+... ....+++..+....+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999874 333222 223222 345 579999999854211 111234444544443 6899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIK 178 (217)
Q Consensus 166 i~~l~~~l~~~~~ 178 (217)
++++++.|.+...
T Consensus 154 I~~L~~~L~~~~~ 166 (614)
T PRK10512 154 IDALREHLLQLPE 166 (614)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999876543
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=2.2e-17 Score=123.44 Aligned_cols=113 Identities=27% Similarity=0.293 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 74 (217)
+|+|+|..|+|||||+++|+....... .....+.......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987433211 1111122222222222 345689999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
..+......++..+|++++|+|+.+..+... ..|+..+.. .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999987665432 334444332 258999999999975
No 220
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.77 E-value=1.7e-17 Score=125.01 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=110.6
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-----------
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------- 77 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------- 77 (217)
.++..+-++|+|+|.||+|||||.|.+.+.++........++....-.+-..+ ..++.|+||||...-
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHH
Confidence 34456779999999999999999999999998876666665555444433333 379999999993321
Q ss_pred -cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------ccC---h
Q 027918 78 -RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR------------AVP---T 141 (217)
Q Consensus 78 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~------------~~~---~ 141 (217)
-......+..||.+++|+|+++....- -...+..+..+. ++|-++|.||.|.....+ ... .
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 011234567899999999999743211 112344444443 578899999999643211 111 1
Q ss_pred HHHHHHHHH---------hCC----eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 142 SKGQALADE---------YGI----KFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 142 ~~~~~~~~~---------~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
+..+.|... .+| .+|.+||..|+|++++.++|.....+.
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 111122111 122 389999999999999999988766544
No 221
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.76 E-value=1.8e-18 Score=140.08 Aligned_cols=163 Identities=26% Similarity=0.369 Sum_probs=121.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+++|+.|+||||||-.|....+.+...+-...-.-...+..+. +...|+|++.....+.....-++++|++++
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 348999999999999999999999888765444332111122233333 679999998766655666778899999999
Q ss_pred EEeCCChhhHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-C-eEEEEcCCCCCCHHH
Q 027918 94 VYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-I-KFFETSAKTNLNVEQ 168 (217)
Q Consensus 94 v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i~~ 168 (217)
+|+.+++.+++.+.. |+..+++..+ .+.|||+|+||+|+.+....-.......+...+. + ..++|||++-.++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 999999999998877 9999988873 4799999999999865333311122333333333 3 578999999999999
Q ss_pred HHHHHHHHHH
Q 027918 169 VFFSIARDIK 178 (217)
Q Consensus 169 l~~~l~~~~~ 178 (217)
+|.+..+++.
T Consensus 166 ~fYyaqKaVi 175 (625)
T KOG1707|consen 166 LFYYAQKAVI 175 (625)
T ss_pred hhhhhhheee
Confidence 9988777664
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=2.8e-17 Score=133.26 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=101.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
...++|+++|..++|||||+++|++... ........+.+... ..+......+.|+||||+.+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~--~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAH--VEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEe--eEecCCCcEEEEEECCCHHH
Confidence 4569999999999999999999986210 01113333444433 33333336789999999998
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEYG- 152 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~- 152 (217)
|.......+..+|++++|+|+.......+ ...+..+... +.| +|+++||+|+.+..... ..+++..+....+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 87766666788999999999986432222 2223333333 567 67889999986422111 1234455554444
Q ss_pred ----CeEEEEcCCCCC--------CHHHHHHHHHHHH
Q 027918 153 ----IKFFETSAKTNL--------NVEQVFFSIARDI 177 (217)
Q Consensus 153 ----~~~~~~Sa~~~~--------~i~~l~~~l~~~~ 177 (217)
++++++||.+|. ++.++++.|.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 589999999983 4555555555443
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3e-17 Score=136.08 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--cC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~ 87 (217)
++|+++|.||+|||||+|+|.+........+++|.+.....+...+. .++++|.||-..... ..++++ .+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 56999999999999999999999888888999999999999888884 699999999654332 223333 35
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
.|+++-|+|+++-+.- +--.++ +.. -+.|++++.|++|... +.-..-+.+.+.+..++|+++++|++|.|++
T Consensus 82 ~D~ivnVvDAtnLeRn--LyltlQ-LlE---~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 82 PDLIVNVVDATNLERN--LYLTLQ-LLE---LGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCEEEEEcccchHHHH--HHHHHH-HHH---cCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 7999999999886532 221222 222 2789999999999743 3333455667888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 168 QVFFSIARDIKQ 179 (217)
Q Consensus 168 ~l~~~l~~~~~~ 179 (217)
++++.+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999888765543
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=8.4e-17 Score=120.67 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCccc-----------------------ceeeeEE---------------EEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-----------------------TIGIDFK---------------IRTIE 58 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~~ 58 (217)
||+++|+.++|||||+++|..+.+...... ..+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987544321100 0000000 01112
Q ss_pred ECCeEEEEEEeeCCCcccccchhhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 59 LDGKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
.++ ..+.++|+||+..|.......+. .+|++++|+|+..+.. .....++..+... ++|+++|+||+|+....
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence 223 57999999999888665444443 6899999999876543 2223333334333 68999999999975321
Q ss_pred C-ccChHHHHHHHHH--------------------------hCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 137 R-AVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
. .....++..+... ...++|.+|+.+|.|++++...|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 1112222222221 124899999999999999987764
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=5.1e-17 Score=131.83 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=101.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC-------CC---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
.+.++|+++|.+++|||||+++|++. .+ ........+.+.....+..++ ..+.|+||||+..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence 56699999999999999999999862 10 011133334443333333333 5789999999988
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccChHHHHHHHHHhC-
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG- 152 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~- 152 (217)
|.......+..+|++++|+|+.+..... ....+..+... ++|.+ +++||+|+.+... .....++..+...++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 8766667778999999999998743222 22333333332 57755 5799999864211 111234455555543
Q ss_pred ----CeEEEEcCCCCC----------CHHHHHHHHHHH
Q 027918 153 ----IKFFETSAKTNL----------NVEQVFFSIARD 176 (217)
Q Consensus 153 ----~~~~~~Sa~~~~----------~i~~l~~~l~~~ 176 (217)
++++++|+.+|. ++..+++.|.+.
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 689999999984 455666665544
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=7.3e-17 Score=115.65 Aligned_cols=160 Identities=20% Similarity=0.226 Sum_probs=104.3
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------cc
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QE 75 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~ 75 (217)
.+-+.+..+.|+++|.+|+|||||||+|+++. ...+..|+.| .....+.+++ .+.++|.|| .+
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT--q~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT--QLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc--ceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence 34455567899999999999999999999976 3344455544 3444455555 489999999 22
Q ss_pred cccchhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-
Q 027918 76 RFRTITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY- 151 (217)
Q Consensus 76 ~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~- 151 (217)
....+...|+. +..++++++|+..+....+. +.++.+... ++|++||+||+|..... .........+...
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~ 165 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKS--ERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChh--HHHHHHHHHHHHhc
Confidence 23333444553 36778889999776543332 233333433 79999999999975421 1111222333222
Q ss_pred ---CCe--EEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 152 ---GIK--FFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 152 ---~~~--~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.+. ++..|+..+.|++++...|.+.+.
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 232 788999999999999888877664
No 227
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=1.3e-16 Score=117.82 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee-eE--EEEEEEECCeEEEEEEeeCCCcccccchh-----hhccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI-DF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYR 86 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~~ 86 (217)
.++|+|+|.+|+|||||+|.|.+...........+. .. ....+.... ...+.+||+||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 379999999999999999999985543221111110 00 101111111 2378999999965432222 22356
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc----------cChHHHHHHHH----HhC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA----------VPTSKGQALAD----EYG 152 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~~ 152 (217)
.+|+++++.+. ... ..-..|+..+... +.|+++|+||+|+...... ...+.....+. ..+
T Consensus 80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78988887432 111 2223455555554 5799999999998321111 11111111221 212
Q ss_pred ---CeEEEEcCC--CCCCHHHHHHHHHHHHHHHhc
Q 027918 153 ---IKFFETSAK--TNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 153 ---~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~~ 182 (217)
-++|.+|+. .+.++..+.+.|+..+..++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 378999998 679999999999999887654
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=4.1e-17 Score=121.87 Aligned_cols=165 Identities=19% Similarity=0.283 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----hhhhcccCCcE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG 90 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~ 90 (217)
||+++|+.+|||||..+.++++..+ ++..-..+.+.....+.+.+. +.+++||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999999976543 333333445555555554433 6999999999875533 35678899999
Q ss_pred EEEEEeCCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccC----hHHHHHHHHHhC---CeEEEEc
Q 027918 91 ILLVYDVTDESSFNNIRN---WIRNIEQHASDNVNKVLVGNKADMDESK-RAVP----TSKGQALADEYG---IKFFETS 159 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~----~~~~~~~~~~~~---~~~~~~S 159 (217)
+|||+|+.+.+..+.+.. .+..+.+..+ +..+.|++.|+|+..+. +... .+.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999985444444444 4444444444 68899999999985321 1111 222333344445 7899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccc
Q 027918 160 AKTNLNVEQVFFSIARDIKQRLADT 184 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~~ 184 (217)
..+ +.+-+.+..+++.++++.+.-
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHH
Confidence 998 588999999999888766543
No 229
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=3.4e-17 Score=131.84 Aligned_cols=168 Identities=23% Similarity=0.237 Sum_probs=127.6
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCc
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~ 74 (217)
+.++.-++.|+-.-.-|||||..+|+.- ........+.++.-....+.+ ++....++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 4466778999999999999999998651 112224455555555444444 345589999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 154 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
..|+....+.+..++++++|+|++..--..++..++..+.. +..+|.|+||+|++.+..+.......+.......+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999987666666665555544 78899999999998754444445555555555568
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 155 FFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
.+.+||++|.|+.++++.|++.+.+..-
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999998865443
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.9e-17 Score=130.75 Aligned_cols=146 Identities=19% Similarity=0.153 Sum_probs=94.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC-------C---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
.+.++|+++|..++|||||+++|++.. + ........+.+... +.+......+.||||||++.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchHH
Confidence 567999999999999999999997420 0 11122344444433 33433336899999999998
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAV--PTSKGQALADEYG- 152 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~- 152 (217)
|..........+|++++|+|+......... ..+..+... +.|.+ +++||+|+.+..... ..++++.++...+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 876666666788999999999874322222 222233332 56655 689999986422111 1234556666554
Q ss_pred ----CeEEEEcCCCCC
Q 027918 153 ----IKFFETSAKTNL 164 (217)
Q Consensus 153 ----~~~~~~Sa~~~~ 164 (217)
++++++||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 689999999874
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=121.64 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=115.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-----ccch----hhhc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTI----TTAY 84 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~~~----~~~~ 84 (217)
..+.|+|.|.||+|||||++.+..........|.++...+...+..++ ..++++||||.-. .+.. ....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 457899999999999999999999988888888888888877777766 6899999999321 1111 1112
Q ss_pred ccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCC
Q 027918 85 YRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 161 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (217)
-.-.++++|+||.+.. -+.+....++..+...+. .|+++|+||+|+.+. ...+++.......+ .....+++.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeee
Confidence 2346889999998864 457777778888888875 799999999998542 12233333333333 457788898
Q ss_pred CCCCHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDI 177 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~ 177 (217)
.+.+++.+-+.+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 9999988887776654
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.3e-16 Score=129.88 Aligned_cols=149 Identities=18% Similarity=0.125 Sum_probs=97.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
....++|+++|.+++|||||+++|++... .....++.+.+.....+..++ ..+.|+||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence 35569999999999999999999986411 111223444443333333333 578999999998
Q ss_pred cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027918 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG 152 (217)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (217)
.|.......+..+|++++|+|+.....- .....+..+... +.| +|+++||+|+.+... ....+++..+....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8877667777899999999999864322 222233333332 577 778899999864221 111234455555443
Q ss_pred -----CeEEEEcCCCCCCH
Q 027918 153 -----IKFFETSAKTNLNV 166 (217)
Q Consensus 153 -----~~~~~~Sa~~~~~i 166 (217)
++++++|+.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 68999999998743
No 233
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.5e-16 Score=128.57 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=118.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
.+=|+++|.-.-|||||+..+-...+.....-..+.++..+.+..+. ....++|+|||||+.|..+..+-..-+|++|+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 46799999999999999999999888777777777788777777752 12489999999999999999998899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhC--CeEEEEcCCCCCCHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLNVEQ 168 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~i~~ 168 (217)
|+++++.-...+.. .+......+.|++|++||+|.++........+.++. ...++ ..++++||++|.|+++
T Consensus 85 VVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 85 VVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 99999854333222 233333448999999999998753222111111111 12222 5799999999999999
Q ss_pred HHHHHHHHH
Q 027918 169 VFFSIARDI 177 (217)
Q Consensus 169 l~~~l~~~~ 177 (217)
|++.+.-..
T Consensus 161 LL~~ill~a 169 (509)
T COG0532 161 LLELILLLA 169 (509)
T ss_pred HHHHHHHHH
Confidence 998866443
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=2.6e-16 Score=120.99 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCC----------------------cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTS----------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
-+|+|+|.+|+|||||+++|+...-... .....+.......+.+.+ .++++|||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG 80 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPG 80 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCC
Confidence 3799999999999999999975211000 011122223333444444 7999999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+..|.......++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 998887777788999999999999875332 22333333332 2689999999999754
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=8.6e-17 Score=131.81 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=101.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|..++|||||+.+|+...- ........+++.....+..+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~- 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT- 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-
Confidence 4568999999999999999998864110 11122333444443333333
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNV-NKVLVGNKADMD 133 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-pvivv~nK~Dl~ 133 (217)
...++|+|+||+.+|.......+..+|++|+|+|+.+. .++ .....+..+... ++ ++|+++||+|+.
T Consensus 84 -~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 -KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT 158 (447)
T ss_pred -CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence 37899999999999998888889999999999999873 121 222222222222 56 468889999975
Q ss_pred CCC-----CccChHHHHHHHHHhC-----CeEEEEcCCCCCCHHH
Q 027918 134 ESK-----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ 168 (217)
Q Consensus 134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 168 (217)
+.. .....++++.++...+ ++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 1112455666666665 6799999999999854
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=1.1e-16 Score=123.71 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=93.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---- 79 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---- 79 (217)
..++|+|+|.+|+|||||+|+|++..+... ..++.........+..++..+.+.||||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999999876533 244445555666666778788999999999432210
Q ss_pred ----------------------hhhhccc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 80 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 80 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.....+. .+|+++|+++.+... +... ...+..+. . ..|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 0112233 467777887766421 1111 22233332 2 589999999999743
Q ss_pred C-CCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 135 S-KRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
. ........+.+.+..+++++|.....+
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 222345556677778888888766543
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=1.2e-16 Score=122.87 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=81.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
+|+++|.+|+|||||+++|+...- ........+++.....+.+++ ..+.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974111 011233444444555556665 789999999998888
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..+...++.+|++++|+|+.+.....+ ..++..+... +.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 888889999999999999987543222 2333333332 689999999999864
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=1.2e-16 Score=119.38 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC--C--------------CcccceeeeEEEEEEEEC--------CeEEEEEEeeCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~ 72 (217)
+|+|+|..++|||||+.+|+...-. . ......++......+.+. +....+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999753211 0 011112222222223332 335889999999
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
|+..|.......++.+|++++|+|+.++........| ..... .+.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999999899999999999999999887654432222 22222 368999999999985
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=1.8e-16 Score=130.90 Aligned_cols=153 Identities=22% Similarity=0.155 Sum_probs=96.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------------cccceeeeEEEEEEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIE 58 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 58 (217)
....++|+|+|..++|||||+.+|+...-... .....+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35569999999999999999999975321100 111223444444444
Q ss_pred ECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (217)
Q Consensus 59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~ 138 (217)
.++ ..+.|+||||+..|.......+..+|++++|+|+.......+...+ ..+.... ..|+|+++||+|+......
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhH
Confidence 444 6899999999988866555567899999999999765321111111 1122221 2478999999998642211
Q ss_pred cCh---HHHHHHHHHh----CCeEEEEcCCCCCCHHHH
Q 027918 139 VPT---SKGQALADEY----GIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 139 ~~~---~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l 169 (217)
... ++...+.... ..+++++||++|.|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 2222333332 368999999999999865
No 240
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.7e-16 Score=119.20 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc----ch---hhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~---~~~~~~~~ 88 (217)
-.|.+||.|++|||||++.+.+.+-.....+.+|....--.+..... -.+.+-|.||.-+-. .+ ....+.++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 36889999999999999999987665555555555555555555332 479999999954321 11 22345678
Q ss_pred cEEEEEEeCCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-EcCCC
Q 027918 89 MGILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSAKT 162 (217)
Q Consensus 89 d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~ 162 (217)
.++++|+|++..+ ..++...+..++..+.. .+.|.+||+||+|+..+ .+........+.+..++..+. +|+.+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 9999999998654 36677777777766643 46899999999997542 222223333444444543222 99999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027918 163 NLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (217)
+.|++++...+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999988887765
No 241
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.9e-17 Score=112.27 Aligned_cols=153 Identities=18% Similarity=0.287 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
=|++++|..|+|||||++.|.+..... +.||. ......+.+.+ .+++-+|.+|+..-+..|..++..+|++++++
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccc-cCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 489999999999999999999866442 22221 12333456666 79999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh-----------C---CeEEE
Q 027918 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY-----------G---IKFFE 157 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~-----------~---~~~~~ 157 (217)
|+-+.+.+.+.+.-+..+.... -.+.|+++.+||+|.+.+. +.++.... .... + ...+.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 9999988887777666654433 2379999999999986643 22222211 1111 1 24678
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 027918 158 TSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~ 176 (217)
||...+.+.-+.|.|+...
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 8888888877888776543
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=4.5e-16 Score=105.28 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------cchhhhccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR 86 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~ 86 (217)
+|+|+|.+|+|||||+|.|++... .....+..+.......+..++ ..+.|+||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998643 233334444445445566677 46789999995431 111223348
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK 129 (217)
.+|++++|+|.+++.. +....+++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877322 33444445553 36899999998
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=6.3e-16 Score=127.32 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=98.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC------C----------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
....++|+++|..++|||||+++|++.. . ........+++.....+..++ ..+.|+|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence 4567999999999999999999998521 0 112233334444334444444 588999999999
Q ss_pred cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHh-
Q 027918 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY- 151 (217)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~- 151 (217)
.|.......+..+|++++|+|+.+..... ...++..+... ++| +|+++||+|+.+... ....+++..+....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 98777777778999999999998754322 23333333333 577 778899999864211 11122444554443
Q ss_pred ----CCeEEEEcCCCCCC
Q 027918 152 ----GIKFFETSAKTNLN 165 (217)
Q Consensus 152 ----~~~~~~~Sa~~~~~ 165 (217)
.++++++|+.+|.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999988753
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=2e-16 Score=128.72 Aligned_cols=148 Identities=24% Similarity=0.194 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC---------------------------------CCcccceeeeEEEEEEEECCe
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELDGK 62 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (217)
++|+|+|..++|||||+.+|+...-. +......+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 58999999999999999999643211 01112233444444444444
Q ss_pred EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--
Q 027918 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-- 140 (217)
Q Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-- 140 (217)
..+.|+||||+..|.......+..+|++++|+|+..+....+...| ..+.... ..++++++||+|+........
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence 6899999999998876666678899999999999765332222211 1222221 246889999999864222111
Q ss_pred -hHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q 027918 141 -TSKGQALADEYG---IKFFETSAKTNLNVEQ 168 (217)
Q Consensus 141 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 168 (217)
.++...+....+ ++++++||.+|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333334433 4799999999999886
No 245
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.3e-16 Score=125.62 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=120.0
Q ss_pred CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918 4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (217)
Q Consensus 4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (217)
++..+..-..+.+-|.|+|.-.-|||||+..|-+..+.....-+.+..+-...+.+... -.++|.|||||..|..+..+
T Consensus 142 ~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 142 PEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred CccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhc
Confidence 33444445556788999999999999999999988776555555555555555555433 58999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-------HHhC--Ce
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-------DEYG--IK 154 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~--~~ 154 (217)
-..-+|++++|+.++|.-...++ +.+......+.|+||.+||+|.++. ..+....-. ..+| ..
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred cCccccEEEEEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCcee
Confidence 99999999999999986433332 2344444458999999999997653 223322222 2233 67
Q ss_pred EEEEcCCCCCCHHHHHHHHHH
Q 027918 155 FFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
++++||++|.|++.|.+.+.-
T Consensus 293 vipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILL 313 (683)
T ss_pred EEEeecccCCChHHHHHHHHH
Confidence 999999999999999887553
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=3.4e-16 Score=128.39 Aligned_cols=151 Identities=19% Similarity=0.109 Sum_probs=99.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|..++|||||+.+|+... . ........+.+.....+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 566899999999999999999987511 0 111233344444444444444
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~ 134 (217)
..++|+|+||+.+|.......+..+|++++|+|+..... + ......+..+... ++| +|+++||+|...
T Consensus 85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT 159 (446)
T ss_pred --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 789999999999998877778899999999999986421 0 1222222233333 555 678999999532
Q ss_pred C--C---CccChHHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q 027918 135 S--K---RAVPTSKGQALADEY-----GIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 135 ~--~---~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 168 (217)
. . .....+++..+.... .++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 1 111223344444433 36799999999999864
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.7e-16 Score=118.38 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=112.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEE-EECCeEEEEEEeeCCCccc-------ccchhhh
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER-------FRTITTA 83 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-------~~~~~~~ 83 (217)
....++|+++|.+|+|||||||+|+.+...+......+.+.....+ .+++ -.+.|||+||... |+.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 3456899999999999999999999766655443444444433333 2334 4899999999554 7777888
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHH--------
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALAD-------- 149 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~-------- 149 (217)
++.+.|.+++++++.++.---+...|..-+ .... +.++++++|.+|..... .......++.|.+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHH-Hhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999876433333333333 2222 37899999999974331 1111122222221
Q ss_pred HhC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 150 EYG--IKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 150 ~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
... -|++.++...+.|++++...++..+..
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 111 478888889999999999999988863
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=4.2e-16 Score=134.77 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=84.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC--------CC-----C-----cccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF--------TT-----S-----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~--------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
+...+|+|+|..|+|||||+++|+...- .. . .....++......+.+++ ..+++|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 4567999999999999999999975311 00 0 012222333334455555 79999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.++...+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99988889999999999999999887665544444 33333 2689999999999864
No 249
>PRK00049 elongation factor Tu; Reviewed
Probab=99.69 E-value=1.2e-15 Score=123.87 Aligned_cols=146 Identities=18% Similarity=0.136 Sum_probs=94.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
...++|+++|..++|||||+++|++... .....+..+.+.....+..++ ..+.|+||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence 4569999999999999999999986211 011233444444333333333 6789999999988
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCc--cChHHHHHHHHHh--
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRA--VPTSKGQALADEY-- 151 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~-- 151 (217)
|.......+..+|++++|+|+..+... ....++..+... +.|++ +++||+|+...... ....++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 877666778899999999999875322 222333334333 57876 57999998542111 1122344444433
Q ss_pred ---CCeEEEEcCCCCC
Q 027918 152 ---GIKFFETSAKTNL 164 (217)
Q Consensus 152 ---~~~~~~~Sa~~~~ 164 (217)
+++++++||.+|.
T Consensus 164 ~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CccCCcEEEeeccccc
Confidence 3689999999875
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=1.6e-15 Score=118.95 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=56.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEE---------------------ECC-eEEEEEEeeCCCc-
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAGQ- 74 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~Dt~G~- 74 (217)
|+++|.|++|||||+++|.+........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999999876533333433333322222 122 2378999999997
Q ss_pred ---ccccchhhh---cccCCcEEEEEEeCC
Q 027918 75 ---ERFRTITTA---YYRGAMGILLVYDVT 98 (217)
Q Consensus 75 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 98 (217)
..+..+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 344444444 489999999999997
No 251
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.7e-15 Score=126.22 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=80.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcC--CCCC--------------------CcccceeeeEEEEEEEECCeEEEEEEe
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIW 69 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (217)
.+..-+|+|+|.+++|||||+++|+.. .... ....+.++......+.+++ ..+++|
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inli 84 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLL 84 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEE
Confidence 355679999999999999999999741 1100 0011112223333444555 789999
Q ss_pred eCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
||||+..|.......++.+|++|+|+|+.+.... ....++..... .++|+++++||+|+..
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9999999888777788999999999999875322 22333333333 3789999999999754
No 252
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=2.6e-15 Score=110.85 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----------hhh
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT 82 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~ 82 (217)
++|+++|.+|+|||||+|.|++....... .+..+.........+++ ..+.++||||...... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654322 23334444444555566 5899999999554321 111
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc-----cChHHHHHHHHHhCCeE
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA-----VPTSKGQALADEYGIKF 155 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~ 155 (217)
.....+|++++|+++.+ -+ ......++.+...++. -.++++|+|+.|....... ......+.+....+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999876 22 2223344445444332 1578899999995432110 11244556666666555
Q ss_pred EEEc-----CCCCCCHHHHHHHHHHHHHH
Q 027918 156 FETS-----AKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 156 ~~~S-----a~~~~~i~~l~~~l~~~~~~ 179 (217)
+..+ +..+.++++|++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5554 34567788888888777765
No 253
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=4.4e-16 Score=123.74 Aligned_cols=165 Identities=22% Similarity=0.223 Sum_probs=124.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCcccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 74 (217)
++.-+..|+-.-.-|||||..+|+.. ...-....+.++......+.+ ++..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 44457889999999999999998652 122334556666666666555 446689999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 154 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (217)
-.|.....+.+..+.++++|+|++..--..++.+.+..+.. +.-+|-|+||+||+.+......+++++..----..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d 162 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD 162 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch
Confidence 99998888889999999999999987666777776666655 68899999999997754333333333332222236
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918 155 FFETSAKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (217)
.+.+||++|.|++++++.|++.+....
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCCCCC
Confidence 789999999999999999999886544
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=1.7e-15 Score=117.11 Aligned_cols=144 Identities=20% Similarity=0.270 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc------------------ccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
+|+++|.+|+|||||+++|+........ ....+.......+.+++ ..+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999753211000 01222233334455555 689999999998887
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE- 157 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (217)
..+...++.+|++++|+|+++.........| ..+.. .+.|+++|+||+|+... ...+....+....+.+++.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence 7788889999999999999886554433333 23333 26899999999998542 1223344444445544333
Q ss_pred -EcCCCCCCHHHH
Q 027918 158 -TSAKTNLNVEQV 169 (217)
Q Consensus 158 -~Sa~~~~~i~~l 169 (217)
+...++.++..+
T Consensus 152 ~ip~~~~~~~~~~ 164 (268)
T cd04170 152 QLPIGEGDDFKGV 164 (268)
T ss_pred EecccCCCceeEE
Confidence 334454444333
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.68 E-value=1.5e-16 Score=113.96 Aligned_cols=116 Identities=23% Similarity=0.436 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhh---cccCCcE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMG 90 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~ 90 (217)
...|+++|+.|||||+|+.+|.++...++..+. +... ...+ ......+.++|+|||.+.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 357999999999999999999998665554443 2221 2222 112247999999999998875444 4788999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCC
Q 027918 91 ILLVYDVTD-ESSFNNIRNWIRNI-EQH--ASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 91 ~i~v~d~~~-~~s~~~~~~~~~~l-~~~--~~~~~pvivv~nK~Dl~~ 134 (217)
+|||+|++. +..+.++.+++-.+ ... ....+|++|++||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999974 34455555543333 222 235799999999999865
No 256
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4e-15 Score=113.33 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=112.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY 85 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 85 (217)
+---.|+++|.|++|||||++.|.+........++++.+...-.+.+++ +++++.|+||.-.-. .......
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3346899999999999999999999888877777778888888888888 899999999843221 2345577
Q ss_pred cCCcEEEEEEeCCChhh-HHHHH--------------------------------------------HHHHHHHHhc---
Q 027918 86 RGAMGILLVYDVTDESS-FNNIR--------------------------------------------NWIRNIEQHA--- 117 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~l~~~~--- 117 (217)
++||++++|+|+....+ .+.+. .++++..-+.
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986433 21111 1111111100
Q ss_pred ------------------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 118 ------------------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 118 ------------------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
..-+|.++|.||+|+.. .+....+.+.. .++.+||..+.|++++.+.|-+.+
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 01378899999999754 23333333333 889999999999999999988776
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=7e-16 Score=132.12 Aligned_cols=153 Identities=22% Similarity=0.171 Sum_probs=96.3
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------------cccceeeeEEEEEE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTI 57 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 57 (217)
.....++|+++|.+++|||||+++|+...-... ...+.+.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999986322111 01122333333334
Q ss_pred EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..++ ..+.|+||||++.|.......+..+|++++|+|+..+....+.. .+..+.... ..+++|++||+|+.+...
T Consensus 100 ~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~--~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 ATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLG--IRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred ccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhC--CCeEEEEEEecccccchh
Confidence 4444 57889999999887665555678999999999997653221111 112222221 257889999999854211
Q ss_pred ccC---hHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q 027918 138 AVP---TSKGQALADEYG---IKFFETSAKTNLNVEQ 168 (217)
Q Consensus 138 ~~~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 168 (217)
... ..++..+....+ ++++++||++|.|+++
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 122333334444 4699999999999885
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=2.1e-15 Score=125.76 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcC--CCCC--------------------CcccceeeeEEEEEEEECCeEEEEEE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQI 68 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (217)
+..+..+|+|+|.+++|||||+++|+.. .... ......++......+.+++ ..+.|
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inl 84 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNL 84 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEE
Confidence 3456679999999999999999998631 1100 0011112222333344444 79999
Q ss_pred eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
|||||+..|.......++.+|++|+|+|+.+.-. .....++..... .+.|+++++||+|+.
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9999998888777778899999999999987421 122334443333 368999999999984
No 259
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=2.8e-15 Score=122.86 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=98.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcC------CC----------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
....++|+++|..++|||||+++|.+. .. .+...+..+.+.....+..++ .++.|+||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence 356799999999999999999999631 10 112224444454444433333 689999999998
Q ss_pred cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHh-
Q 027918 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEY- 151 (217)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~--~~~~~~~~~~~~- 151 (217)
.|..........+|++++|+|+.+..... ....+..+... +.| +|+++||+|+.+..... ...++..+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 87665555667899999999997653222 22223333333 578 47889999986421100 111233333322
Q ss_pred ----CCeEEEEcCC---CCCC-------HHHHHHHHHHHH
Q 027918 152 ----GIKFFETSAK---TNLN-------VEQVFFSIARDI 177 (217)
Q Consensus 152 ----~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 177 (217)
.++++++|+. +|.| +.++++.|.+.+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2678888875 4544 556666655543
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=8e-16 Score=122.78 Aligned_cols=167 Identities=20% Similarity=0.180 Sum_probs=113.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-cch--------hhh
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTI--------TTA 83 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~--------~~~ 83 (217)
..++|+|+|.||+|||||+|.|.+.... .++.++++.+.....+.++| +.+.|.||+|..+- ... ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 3489999999999999999999998765 67788888888888888888 89999999997651 111 133
Q ss_pred cccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHh-CC
Q 027918 84 YYRGAMGILLVYDVTD--ESSFNNIRNWIRNIEQHAS------DNVNKVLVGNKADMDESKRAVPTSKG-QALADEY-GI 153 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~------~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~~~-~~ 153 (217)
-+..+|++++|+|+.. -++...+...+.....-.. ...|++++.||.|+...-......-. ..-+... ..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 5678999999999943 3333333333333322111 23689999999998654222222111 0011111 13
Q ss_pred -eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 154 -KFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 154 -~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
...++|+++++|+++|...|.+.+...-.
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 34569999999999999998887765433
No 261
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-15 Score=109.01 Aligned_cols=155 Identities=23% Similarity=0.297 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc---CCcEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i 92 (217)
-.|+++|+.+||||+|+-+|..+.+..+..+ ++.....+...+ -.++++|.|||.+.+.-...+++ .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 5799999999999999999998866554443 444555555555 35899999999998876666666 789999
Q ss_pred EEEeCCC-hhhHHHHHHH-HHHHHHh--cCCCCcEEEEEeCCCCCCCCCc-cChHH----HHHH----------------
Q 027918 93 LVYDVTD-ESSFNNIRNW-IRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSK----GQAL---------------- 147 (217)
Q Consensus 93 ~v~d~~~-~~s~~~~~~~-~~~l~~~--~~~~~pvivv~nK~Dl~~~~~~-~~~~~----~~~~---------------- 147 (217)
||+|... .....++..+ +..+... ....+|++|.+||.|+.-+... ...+. +..+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999754 2334445543 3333333 3456899999999998543221 11111 1111
Q ss_pred ----------------HHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 148 ----------------ADEYGIKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 148 ----------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
+....+.+.++|++++ +++++-+||.+.
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0112356888999988 899999998765
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=4.1e-15 Score=128.49 Aligned_cols=117 Identities=18% Similarity=0.126 Sum_probs=86.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCC--------C----------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF--------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.+...+|+|+|.+++|||||+++|+...- . .......+.+.....+.+++ ..+.|+||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 45667999999999999999999975210 0 01234455566666666766 6899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+..+...+...++.+|++++|+|+.+.....+. ..+..+.. .+.|+++++||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 988888888889999999999999876433322 23333333 2689999999999864
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.63 E-value=3e-15 Score=122.60 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=101.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEE---------------EEC-C------------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTI---------------ELD-G------------ 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~-~------------ 61 (217)
...++|.++|.-..|||||+..|.+... .+......+.+...... ... +
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999986322 11112222211111100 000 0
Q ss_pred ---eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 62 ---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 62 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
....+.|+|+||++.|.......+..+|++++|+|+..+ ..... ...+..+... . -.++|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIM-K-LKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHc-C-CCcEEEEEecccccCHHH
Confidence 013789999999998877767777899999999999864 12111 2222222222 1 246899999999864211
Q ss_pred c-cChHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 138 A-VPTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 138 ~-~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
. ...+++..+... .+.+++++||++|.|++.|++.|.+.+
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1 112233333322 247899999999999999998888644
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=7e-15 Score=127.09 Aligned_cols=117 Identities=18% Similarity=0.113 Sum_probs=85.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------------CcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.+...+|+|+|.+++|||||+++|+...-.. ......+++.....+.+++ ..+.||||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence 3456799999999999999999997421100 0123344555556666666 7899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+..+...+...++.+|++++|+|+.+.....+.. ++..+... +.|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY---EVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc---CCCEEEEEECCCCCC
Confidence 9988888888999999999999998765444332 33333332 689999999999865
No 265
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.61 E-value=1.7e-14 Score=109.82 Aligned_cols=162 Identities=15% Similarity=0.276 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC--eEEEEEEeeCCCcccccchhhhcccCC----c
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRGA----M 89 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~----d 89 (217)
-+|+|+|+.++||||||.+|.+.. .+.+..+.+|.+..+.-+. ...++.+|-..|+.-+..+....+... .
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 489999999999999999999854 6677778888777765432 236889999999877777666555432 4
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHHHHh-------------------------c--------------------------
Q 027918 90 GILLVYDVTDES-SFNNIRNWIRNIEQH-------------------------A-------------------------- 117 (217)
Q Consensus 90 ~~i~v~d~~~~~-s~~~~~~~~~~l~~~-------------------------~-------------------------- 117 (217)
++|++.|.+++- -++.+..|.+-+..+ .
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 688899999983 356666665444311 0
Q ss_pred ----------CCCCcEEEEEeCCCCCC----------CCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 118 ----------SDNVNKVLVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 118 ----------~~~~pvivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
..++|++||++|+|... +........++.||..+|..+|.+|+++..|++-+..+|.+.+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 01589999999999721 1122345668889999999999999999999999999999988
Q ss_pred HHH
Q 027918 178 KQR 180 (217)
Q Consensus 178 ~~~ 180 (217)
+..
T Consensus 290 yG~ 292 (473)
T KOG3905|consen 290 YGF 292 (473)
T ss_pred cCc
Confidence 653
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=4.9e-14 Score=113.71 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE---------------------C-CeEEEEEEeeCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG 73 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G 73 (217)
++|+++|.||+|||||+|+|.+........+..+.+.....+.+ + ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765444444444444332221 1 1236799999999
Q ss_pred cc----cccchhhhc---ccCCcEEEEEEeCC
Q 027918 74 QE----RFRTITTAY---YRGAMGILLVYDVT 98 (217)
Q Consensus 74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 98 (217)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 233333344 78999999999996
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=2.5e-14 Score=123.63 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC--CC----------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.+...+|+|+|.+++|||||+++|+... .. .......+.+.....+.+.+ ..++|+||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 4556799999999999999999997411 00 00234445555556666665 6899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+..+.......++.+|++++|+|+...-...+..-| ..+... +.|+++++||+|+..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~---~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY---KVPRIAFVNKMDRTG 141 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc---CCCEEEEEECCCCCC
Confidence 988776677778899999999998776443333323 333333 689999999999853
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.4e-14 Score=112.51 Aligned_cols=154 Identities=20% Similarity=0.160 Sum_probs=102.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++++|+|..++|||||+-+|+.. ...+....+.+++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 56789999999999999999999651 11233445556665555555444
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
..++|+|+||+..|-.....-...||++|+|+|+.+.+. +.. ..+....+.+..+ -..+||++||+|+.+-.
T Consensus 85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence 689999999999888888888899999999999988631 111 1111222333332 23568888999986411
Q ss_pred Cc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918 137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 169 (217)
.. ....+...+.+..+ ++|+++|+..|.|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 11 11122333444433 57999999999988753
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=2.8e-14 Score=123.34 Aligned_cols=108 Identities=24% Similarity=0.242 Sum_probs=78.0
Q ss_pred EcCCCCcHHHHHHHHHcCCCC------------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhh
Q 027918 21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (217)
Q Consensus 21 ~G~~~~GKttli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 82 (217)
+|.+++|||||+++|+...-. .....+.++......+.+++ ..+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999543111 01123344455555666666 7899999999988877788
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..+..+|++++|+|++..........| ..+.. .+.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 889999999999999886655443333 23333 2689999999999753
No 270
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=1.4e-13 Score=114.46 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=73.0
Q ss_pred EEEEEeeCCCcccc-----cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918 64 IKLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~ 138 (217)
..+.|+||||.... .......+.++|+++||+|.....+..+ ....+.+..... +.|+++|+||+|+.+. ..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~dr-ee 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQDR-NS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCCc-cc
Confidence 36889999996432 2233457899999999999987433332 223444444321 3599999999998532 22
Q ss_pred cChHHHHHHHHHh----C---CeEEEEcCCCCCCHHHHHHHHHH
Q 027918 139 VPTSKGQALADEY----G---IKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 139 ~~~~~~~~~~~~~----~---~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
...+....+.... . ..+|++||+.|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2344444443211 2 36999999999999999998876
No 271
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=8.7e-14 Score=105.74 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=78.5
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---h---
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---I--- 80 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~--- 80 (217)
.+......++|+|+|.+|+|||||+|.|++...... .....+..........++ ..+.||||||...... .
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~ 101 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRK 101 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHH
Confidence 355667789999999999999999999999765322 222333444444455566 6899999999654421 0
Q ss_pred ----hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 027918 81 ----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMD 133 (217)
Q Consensus 81 ----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~ 133 (217)
...++. ..|+++||..++....-..-...++.+...++.+ .++++|.||+|..
T Consensus 102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 122332 5788888876664321112223444454433321 4689999999974
No 272
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=4.1e-14 Score=93.06 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc----chhhhcccCCcEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTAYYRGAMGIL 92 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~d~~i 92 (217)
||+++|..|+|||||.+.|.+...- +..|...+ ++.+ -.+||||...-+ +.......++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999986432 23333322 2111 136999944322 22344557899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~ 171 (217)
+|-+++++++. +-..+.... ..|+|-|++|.||++ ....+..+.+..+-|. ++|.+|+.++.|++++++
T Consensus 70 ~v~~and~~s~-----f~p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeecccCcccc-----CCccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 99999998652 111122222 457999999999964 2345666777788885 899999999999999999
Q ss_pred HHHH
Q 027918 172 SIAR 175 (217)
Q Consensus 172 ~l~~ 175 (217)
+|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8764
No 273
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.54 E-value=1.4e-13 Score=109.43 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=113.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC--CC------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGS--FT------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 80 (217)
.-+|+|+-.-.-|||||+..|+... |. .....--++.+..+...+..+.+.++|+|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3479999999999999999997632 11 112222234444444333333389999999999999999
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCC
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGI 153 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~ 153 (217)
....++..|++++++|+.+... ...+..+ .+....+.+.|+|+||+|.+++......++..++... +++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-CchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987542 2222222 2222336788999999999876555555555555443 457
Q ss_pred eEEEEcCCCC----------CCHHHHHHHHHHHHHHHh
Q 027918 154 KFFETSAKTN----------LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 154 ~~~~~Sa~~~----------~~i~~l~~~l~~~~~~~~ 181 (217)
|++..|+..| .++..||+.|++++....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 8999999876 467788888888875443
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.53 E-value=6.2e-13 Score=104.87 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=84.8
Q ss_pred EEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHh-cCCCCcEE
Q 027918 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNVNKV 124 (217)
Q Consensus 56 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~pvi 124 (217)
.+.+++ +.+.+||++|+...+..|.+++.++++++||+|+++. ..+.+....+..+... .-.+.|++
T Consensus 155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil 232 (317)
T cd00066 155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII 232 (317)
T ss_pred EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence 344444 7899999999999999999999999999999999873 2233322333333221 12468999
Q ss_pred EEEeCCCCCCC--------------CC-ccChHHHHHHHHH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 125 LVGNKADMDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 125 vv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
+++||.|+... .. ....+.+..|... ..+..+.++|.+-.+++.+|+.+.+.+..
T Consensus 233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 99999996321 11 2233444444322 12456788999999999999999888876
Q ss_pred Hh
Q 027918 180 RL 181 (217)
Q Consensus 180 ~~ 181 (217)
..
T Consensus 313 ~~ 314 (317)
T cd00066 313 NN 314 (317)
T ss_pred HH
Confidence 53
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=4.5e-13 Score=103.49 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=74.9
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-------
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------- 80 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 80 (217)
.++....++|+|+|.+|+||||++|+|++...... ...+.+..........++ ..+.|+||||.......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 34446778999999999999999999998765321 122222222223333455 68999999996643211
Q ss_pred hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027918 81 TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMD 133 (217)
Q Consensus 81 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~ 133 (217)
...++ ...|+++||.+++.....+.-...++.+...++. -.++|||+|+.|..
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 11112 2689999997665322211222344444444321 24689999999964
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=5.2e-13 Score=99.66 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-------hh----h
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------IT----T 82 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~----~ 82 (217)
++|+|+|.+|+||||++|.+++....... ....+..........++ ..+.|+||||...... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999987764332 22334445555557777 6899999999432211 11 1
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc--c----ChHHHHHHHHHhCCe
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA--V----PTSKGQALADEYGIK 154 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~~~~~~--~----~~~~~~~~~~~~~~~ 154 (217)
......|+++||+..... + ......+..+...++. -..++||+|..|-..+... . ....++.+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t-~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-T-EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-h-HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 134578999999998832 2 1222233344444332 1457888998885332220 0 112355666777777
Q ss_pred EEEEcCC------CCCCHHHHHHHHHHHHHHH
Q 027918 155 FFETSAK------TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 155 ~~~~Sa~------~~~~i~~l~~~l~~~~~~~ 180 (217)
|+..+.+ ....+.+|++.+-+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8777766 2345667777766666554
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=1.9e-13 Score=118.61 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=79.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCC-cccceeeeE--EEEEEEECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTS-FITTIGIDF--KIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
++..+|+|+|..++|||||+++|+.. .+... .....++.. ....+.+++....+.||||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45679999999999999999999752 11110 011112221 1112234445589999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..|.......++.+|++++|+|+.+.-.......|. .+.. .+.|+++|+||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH---cCCCEEEEEEChhccc
Confidence 998887888899999999999998743322222222 2222 2578899999999754
No 278
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.51 E-value=1.3e-12 Score=103.96 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=85.6
Q ss_pred EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHh-cCCCC
Q 027918 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNV 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~-~~~~~ 121 (217)
....+.+++ +.+.+||.+|+...+..|.+++.+++++|||+|+++-+ .+.+....+..+... .-.+.
T Consensus 175 ~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~ 252 (342)
T smart00275 175 QETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT 252 (342)
T ss_pred EEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence 334455555 68899999999999999999999999999999998732 233333333333221 22468
Q ss_pred cEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----------hCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 122 NKVLVGNKADMDES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 122 pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
|+++++||.|+... ......+.+..|... ..+..+.++|.+-.++..+|+.+.+.
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~ 332 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI 332 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence 99999999997321 111223333333221 12456788899999999999998888
Q ss_pred HHHHh
Q 027918 177 IKQRL 181 (217)
Q Consensus 177 ~~~~~ 181 (217)
+....
T Consensus 333 I~~~~ 337 (342)
T smart00275 333 ILQRN 337 (342)
T ss_pred HHHHH
Confidence 77653
No 279
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=5.5e-13 Score=106.71 Aligned_cols=91 Identities=20% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTA 72 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~ 72 (217)
...-....++|.|+|.||+|||||+|.|.+........+.++.+.....+.+.+.+ .++.++|+|
T Consensus 14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 33444667899999999999999999999887766556777766666666554322 358999999
Q ss_pred Cccccc-------chhhhcccCCcEEEEEEeCC
Q 027918 73 GQERFR-------TITTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 73 G~~~~~-------~~~~~~~~~~d~~i~v~d~~ 98 (217)
|...-. ......++++|++++|+|..
T Consensus 94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 954211 12233567899999999974
No 280
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.50 E-value=5.7e-13 Score=117.69 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=97.0
Q ss_pred cHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE----------------EEEEEeeCCCcccccchhhhcccCCcE
Q 027918 27 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 27 GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
+||||+.+|-+..+......+.|.++....+..+... -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999887766556666666655555443210 128999999999998877778888999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC------------hHHHHHH--------
Q 027918 91 ILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------------TSKGQAL-------- 147 (217)
Q Consensus 91 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~------------~~~~~~~-------- 147 (217)
+++|+|+++ +.+++.+. .+... +.|+++|+||+|+........ .....++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999987 33433332 22222 689999999999853211000 0001111
Q ss_pred --HHH-------------h--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 148 --ADE-------------Y--GIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 148 --~~~-------------~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
..+ . .++++++||++|+|+++++.+|....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 011 1 26899999999999999998776543
No 281
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=110.45 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=118.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cchhh-----h
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITT-----A 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~-----~ 83 (217)
.+.-.++|+|.|++|||||+|.+........+.++++...+...+.+. ...++++||||.-.. +.... .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 455689999999999999999999888877777776666665555554 478999999994321 11111 1
Q ss_pred cccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--ccChHHHHHHHHHhCCeEEEEc
Q 027918 84 YYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR--AVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~S 159 (217)
...--.+++|+.|++.. .|.+....++..+...+. +.|+|+|+||+|+...+. ....+.++.....-+++++.+|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 11223568889998864 567777778888888876 689999999999754222 1222334445555568999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (217)
+.+.+|+-++....++.+..+
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccchhceeeHHHHHHHHHHHH
Confidence 999999998877777666544
No 282
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.49 E-value=1.2e-12 Score=107.21 Aligned_cols=162 Identities=16% Similarity=0.298 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC--eEEEEEEeeCCCcccccchhhhcccC----Cc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM 89 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d 89 (217)
-.|+|+|..++||||||.+|.+. +.+.++.+.+|.+..+.-++ ....+.+|-..|...+..+....+.. --
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 58999999999999999999764 34567778888877765432 22578999998877777666554542 24
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHH-------------------------Hhc--------------------------
Q 027918 90 GILLVYDVTDESS-FNNIRNWIRNIE-------------------------QHA-------------------------- 117 (217)
Q Consensus 90 ~~i~v~d~~~~~s-~~~~~~~~~~l~-------------------------~~~-------------------------- 117 (217)
++|+|+|.+.|.. ++.+..|+..++ .+.
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 6888999998754 334444433332 000
Q ss_pred -----------CCCCcEEEEEeCCCCCC----C------CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 118 -----------SDNVNKVLVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 118 -----------~~~~pvivv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
..++|++||++|+|... . ......+-++.||..+|..+|.+|++...+++.++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 00479999999999632 0 11133455778888999999999999999999999999988
Q ss_pred HHHH
Q 027918 177 IKQR 180 (217)
Q Consensus 177 ~~~~ 180 (217)
+...
T Consensus 263 l~~~ 266 (472)
T PF05783_consen 263 LYGF 266 (472)
T ss_pred hccC
Confidence 8654
No 283
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=2.9e-13 Score=101.01 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=68.7
Q ss_pred EEEEEEeeCCCccccc------chhhhccc--CCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 63 RIKLQIWDTAGQERFR------TITTAYYR--GAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 63 ~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
.+.+.|+||||+-+.- ..+...+. ..-++++|+|..+..+ ...+...+-.......-.+|+|+|+||+|+.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 3578999999976421 11222222 2345666777543222 1123333323333334479999999999986
Q ss_pred CCCCccCh-HHHHHH---HH---------------------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 134 ESKRAVPT-SKGQAL---AD---------------------EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 134 ~~~~~~~~-~~~~~~---~~---------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+......+ .+.+.| .+ ..++..+-+|+.+|.|++++|..+-..+-+...
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 64222110 011111 11 113678899999999999999998877765433
No 284
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.48 E-value=7.7e-13 Score=102.01 Aligned_cols=150 Identities=23% Similarity=0.214 Sum_probs=104.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC---------------------------------CCCCcccceeeeEEEEEEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---------------------------------FTTSFITTIGIDFKIRTIEL 59 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (217)
...++.+-+|.-.=||||||-+|+... .......+.++++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999997621 11123344556665555443
Q ss_pred CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027918 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 139 (217)
Q Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~ 139 (217)
+ +.+|.+-|||||+.|....-.-...+|++|+++|+. ...-+...-...+....+- ..+++.+||+||.+-....
T Consensus 84 ~--KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 E--KRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred c--cceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence 3 369999999999999887777788999999999993 3333333333344444432 5678889999997744333
Q ss_pred Ch---HHHHHHHHHhC---CeEEEEcCCCCCCHH
Q 027918 140 PT---SKGQALADEYG---IKFFETSAKTNLNVE 167 (217)
Q Consensus 140 ~~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~ 167 (217)
.. .+-..|+..++ ..++++||..|+|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 32 33345566666 479999999998875
No 285
>PRK13768 GTPase; Provisional
Probab=99.45 E-value=6.7e-13 Score=101.49 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=70.0
Q ss_pred EEEEeeCCCcccc---cchhhhcccC-----CcEEEEEEeCCChhhHHHHHH--HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 65 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 65 ~~~l~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~--~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.+.+||+||+.+. +..+..+++. .+++++|+|+.......+... |+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997663 3344333322 889999999966443333222 22222211 23689999999999854
Q ss_pred CCCcc-ChHHHH------------------------HHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 135 SKRAV-PTSKGQ------------------------ALADEYG--IKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 135 ~~~~~-~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
..... ...... ...+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 32110 000000 1122233 47899999999999999999988763
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.44 E-value=1.3e-12 Score=113.71 Aligned_cols=118 Identities=21% Similarity=0.181 Sum_probs=78.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC--C--------------CcccceeeeEEEEEE--EECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTI--ELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~ 74 (217)
++.-+|+|+|..++|||||+.+|+...-. . ......++......+ ..++....++|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45568999999999999999999753211 0 001111222222222 22434478999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..|.......++.+|++++|+|+...-.......|. ..... +.|.|+++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc---CCCeEEEEECchhhc
Confidence 998888888889999999999988754333333333 22222 467899999999753
No 287
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=1.1e-12 Score=89.47 Aligned_cols=114 Identities=31% Similarity=0.374 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-cceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+++.++.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998777654333 3322 223344567788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
|+..+.++++.+ |...+......++|.++++||.|+.+.. ....+.. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988765 7777665555568899999999984422 3333222 245677888988874
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.42 E-value=1.1e-12 Score=99.71 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=76.5
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (217)
++++.+.+.+++++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+||.+. .....+..+.+ ...+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~-~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD-EDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC-HHHHHHHHHHH-HHCCC
Confidence 567778888999999999999999887 89999999887654 36899999999999642 22233344444 35778
Q ss_pred eEEEEcCCCCCCHHHHHHHHH
Q 027918 154 KFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
+++++||++|.|++++|+.|.
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred eEEEEecCCchhHHHHHhhhc
Confidence 999999999999999998875
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=4.7e-12 Score=93.37 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=63.3
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 143 (217)
....++++.|..-...... .-++.+|.|+|+.+.+.... .+...+. ..=++++||+|+.+. .....+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~-~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPM-VGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhcccc-ccccHHH
Confidence 4566778877422222221 12678999999987655321 1111221 122899999998631 1223344
Q ss_pred HHHHHHH--hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 144 GQALADE--YGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 144 ~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
..+..+. .+.+++++|+++|.|+++++++|.+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4444444 347999999999999999999998654
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.41 E-value=1.4e-11 Score=100.56 Aligned_cols=164 Identities=19% Similarity=0.276 Sum_probs=120.1
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
++......+...|+|+.++|||.|++.++++.+...+..+....+....+...+....+.+.|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 4445566789999999999999999999999888766666666666666666666677888887654 333322222 67
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (217)
+|+++++||.+++.++......++.-... ...|+++|++|+|+.+.......+. .++++++++ +.+..|.++.-.
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence 99999999999999998887765555444 3689999999999966443334344 789999997 456667664323
Q ss_pred HHHHHHHHHHH
Q 027918 167 EQVFFSIARDI 177 (217)
Q Consensus 167 ~~l~~~l~~~~ 177 (217)
.++|..|..+.
T Consensus 572 ~~lf~kL~~~A 582 (625)
T KOG1707|consen 572 NELFIKLATMA 582 (625)
T ss_pred chHHHHHHHhh
Confidence 78888777644
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.40 E-value=3.5e-12 Score=112.39 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=81.5
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC----------------CCcccceeeeEEEEEEEEC--------------
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD-------------- 60 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~-------------- 60 (217)
..++..+|+|+|..++|||||+.+|+...-. .......++......+.+.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456679999999999999999999753210 0111122222222222221
Q ss_pred CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
+....++|+||||+..|.......++.+|++|+|+|+..+-...+...|.. +.. .++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CCCCEEEEEECCccc
Confidence 124689999999999998888888899999999999987654443333332 222 368999999999975
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=2.3e-12 Score=95.92 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------C----cccceeeeEEEEEEEECC-------------
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------S----FITTIGIDFKIRTIELDG------------- 61 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~------------~----~~~~~~~~~~~~~~~~~~------------- 61 (217)
.......|.|+|..|+|||||+++++...... . .....+. ....+ .++
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~--~~~~l-~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA--PAIQI-NTGKECHLDAHMVAHA 94 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC--cEEEE-cCCCcccCChHHHHHH
Confidence 33457899999999999999999987531100 0 0000000 00000 010
Q ss_pred ------eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 62 ------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 62 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
....+.|+++.|.-... ..+....+..+.|+|..+.+.. .... ... ...|.++++||+|+.+.
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~---~~~---~~~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY---PGM---FKEADLIVINKADLAEA 163 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh---HhH---HhhCCEEEEEHHHcccc
Confidence 01356667776621110 1111234555667777654321 1111 111 13577999999998642
Q ss_pred CCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 136 KRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
............+... .+++.+||++|.|++++++++.+.
T Consensus 164 -~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 164 -VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1122233333344433 789999999999999999999774
No 293
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.40 E-value=1.4e-11 Score=96.56 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=92.1
Q ss_pred eeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHhcC----
Q 027918 50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQHAS---- 118 (217)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~~~---- 118 (217)
+.+....+.+.+ ..+.++|.+|+..-+.-|.+++.+++++|||+++++-+ ....+..-+..+...+.
T Consensus 183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F 260 (354)
T KOG0082|consen 183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF 260 (354)
T ss_pred CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence 345556666766 79999999999999999999999999999999987632 23444444444443332
Q ss_pred CCCcEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----h-----CCeEEEEcCCCCCCHHHHHHHHH
Q 027918 119 DNVNKVLVGNKADMDES--------------KRAVPTSKGQALADE-----Y-----GIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 119 ~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
.+.++|+++||.||..+ ......+++..+... + .+-.+.+.|.+-.+++.+|+.+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 46899999999998432 111233344333322 1 24567788999999999999999
Q ss_pred HHHHHHhc
Q 027918 175 RDIKQRLA 182 (217)
Q Consensus 175 ~~~~~~~~ 182 (217)
+.+....-
T Consensus 341 d~Ii~~nl 348 (354)
T KOG0082|consen 341 DTIIQNNL 348 (354)
T ss_pred HHHHHHHH
Confidence 98876643
No 294
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.40 E-value=1.6e-11 Score=97.29 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCCCccccc--
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~-- 78 (217)
++|.++|.||+|||||+|+|.+........+.++.+.....+.+.+.+ ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999987555555666666665555554321 259999999954311
Q ss_pred --c---hhhhcccCCcEEEEEEeCC
Q 027918 79 --T---ITTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 79 --~---~~~~~~~~~d~~i~v~d~~ 98 (217)
. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2223467899999999984
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=1.7e-11 Score=97.35 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=89.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC----CCC------------CCcccc---eeeeEEE-----EEEEE-CCeEEEEEEe
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG----SFT------------TSFITT---IGIDFKI-----RTIEL-DGKRIKLQIW 69 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~~-~~~~~~~~l~ 69 (217)
.+.|.|+|+.++|||||||+|.+. ... +...++ ++++... ..+.. ++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 489999999999999999999886 222 112222 3333333 22322 4455799999
Q ss_pred eCCCcccc--------cc------h---------------hhhccc-CCcEEEEEE-eCC-----ChhhHHHHHHHHHHH
Q 027918 70 DTAGQERF--------RT------I---------------TTAYYR-GAMGILLVY-DVT-----DESSFNNIRNWIRNI 113 (217)
Q Consensus 70 Dt~G~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~l 113 (217)
||+|...- .. - ....+. .+++.++|. |.+ .....+.-..|+..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99993321 11 0 122344 788888887 653 112233344577777
Q ss_pred HHhcCCCCcEEEEEeCCC-CCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 114 EQHASDNVNKVLVGNKAD-MDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 114 ~~~~~~~~pvivv~nK~D-l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
... +.|+++|+|+.| ... ...+....+..+++++++.+|+..
T Consensus 177 k~~---~kPfiivlN~~dp~~~----et~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHPYHP----ETEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred Hhc---CCCEEEEEECcCCCCc----hhHHHHHHHHHHhCCceEEEEHHH
Confidence 665 799999999999 322 244445566677888888887753
No 296
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.4e-11 Score=95.00 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=97.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC----C---CCCcccceeeeEEEEEEEE-------CCeEEEEEEeeCCCcccccch
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGS----F---TTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~ 80 (217)
++++.++|.-.+|||||.++|..-. | ..+.....+.+.....+.. .+...++.++|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 3899999999999999999996521 1 2223334444443333333 334478899999999765544
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCCCccC-hHHHHHHHHHh-------
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD-ESKRAVP-TSKGQALADEY------- 151 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~-~~~~~~~-~~~~~~~~~~~------- 151 (217)
...-..-.|..++|+|+.-.......+-+ .+..... ...+||+||+|+. +..+... ........+.+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 44444567899999998754322222211 1222222 3457888998863 3222211 11222222221
Q ss_pred CCeEEEEcCCCC----CCHHHHHHHHHHHHHHH
Q 027918 152 GIKFFETSAKTN----LNVEQVFFSIARDIKQR 180 (217)
Q Consensus 152 ~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~~ 180 (217)
+.|++++|+..| +++.++.+.|...+.+.
T Consensus 163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred CCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 279999999999 66777666666665443
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=1.6e-11 Score=92.47 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=83.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
.....|+|+|.+|+|||||++.|.+...........+. +. .+...+ ..+.++||||.. .......+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~~~~--~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVTGKK--RRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEecCC--ceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 44567999999999999999999875222111111111 11 111223 578999999864 22233467899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCcc--ChHHHHH-HHHHh--CCeEEEEcCCCCCC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNLN 165 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~~ 165 (217)
+|+|+........ ..++..+... +.|. ++|+||.|+.+..... ....++. +..+. +.+++.+||+++-.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9999976443222 2233334332 4674 5599999986422111 1122222 33222 36899999988743
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.38 E-value=5.2e-12 Score=111.12 Aligned_cols=118 Identities=21% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCC----------------CCcccceeeeEEEEEEEEC--------CeEEEEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ 67 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (217)
.+...+|+|+|..++|||||+++|+...-. .......++......+.+. +....++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345569999999999999999999863210 0011111222222222332 1246799
Q ss_pred EeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 68 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
|+||||+..+.......++.+|++|+|+|+..+-...+..-| ..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 999999999888788888999999999999875433332223 33333 268999999999985
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.4e-11 Score=100.64 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=103.4
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHc-------------------------------CCCCCCcccceeeeEEEEEE
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSD-------------------------------GSFTTSFITTIGIDFKIRTI 57 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 57 (217)
+......++.+|+|..++|||||+.+|+. ....+....+.+++.....+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 44455779999999999999999999865 11123345555555554444
Q ss_pred EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
. .....++|+|+||+..|......-...+|++++|+|++..+ .|+ ..+.....++... -..+||++||+|
T Consensus 251 e--s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD 326 (603)
T KOG0458|consen 251 E--SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMD 326 (603)
T ss_pred e--cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccc
Confidence 4 44478999999999988888878888999999999998642 121 1222222223322 245688899999
Q ss_pred CCCCC---CccChHHHHHHH-HHhC-----CeEEEEcCCCCCCHHHH
Q 027918 132 MDESK---RAVPTSKGQALA-DEYG-----IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 132 l~~~~---~~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~l 169 (217)
+.+=. .......+..|. +..+ +.|+++|...|+|+-..
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 75411 112223344444 3333 57999999999987644
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.38 E-value=9.3e-14 Score=104.96 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=59.1
Q ss_pred EEEEeeCCCcccccchhhhcc--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
.+.|+|||||.++...+.... ...-++++++|+..... ...+..++-.+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999987654443222 34557888888764432 223334444443333337999999999998652
Q ss_pred CCcc------------------ChHHHHHHHHHh---C-C-eEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 136 KRAV------------------PTSKGQALADEY---G-I-KFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 136 ~~~~------------------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
.... .....+.++.-. + . .++.+|+.+++++.+++..+-+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1000 001111112211 2 3 799999999999999998876654
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.37 E-value=6.2e-12 Score=97.27 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=76.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-------
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------- 77 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 77 (217)
.++|+|+|.+|+|||||||.|++...... ...+..+......+.-++..+.++|+||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998654322 1233344445555666788899999999992210
Q ss_pred -----------cch---------hhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-
Q 027918 78 -----------RTI---------TTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES- 135 (217)
Q Consensus 78 -----------~~~---------~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~- 135 (217)
... ....-...|+++|+++.+... .-.++. .+..+.. .+++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~----~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK----RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc----cccEEeEEecccccCHH
Confidence 000 001114578999999986521 112222 2233332 4789999999996321
Q ss_pred CCccChHHHHHHHHHhCCeEEEEc
Q 027918 136 KRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
+.......+..-...+++.+|...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 111223334444556677665533
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=6.1e-12 Score=99.73 Aligned_cols=161 Identities=12% Similarity=0.131 Sum_probs=80.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh-----h
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-----T 82 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~ 82 (217)
...++|+|+|.+|+|||||||.|.+-.- .++....++.+...+.. .+. -++.+||.||..--+... .
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~--pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKF--PNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS---TTEEEEEE--GGGSS--HHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCC--CCCeEEeCCCCCCCCCCHHHHHHH
Confidence 3468999999999999999999976221 12211112223332222 111 269999999954322222 2
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCccCh----HHHHHHHHH--
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM--DES----KRAVPT----SKGQALADE-- 150 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl--~~~----~~~~~~----~~~~~~~~~-- 150 (217)
.-+...|.+|++.+.. -+..+ ..+...+.+. +.|+++|-||+|. .+. ...... +.+++.+.+
T Consensus 110 ~~~~~yD~fiii~s~r--f~~nd-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 110 VKFYRYDFFIIISSER--FTEND-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TTGGG-SEEEEEESSS----HHH-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCCC--Cchhh-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 2345678776665532 11111 2233444444 6899999999995 111 112222 223333322
Q ss_pred --hC---CeEEEEcCCC--CCCHHHHHHHHHHHHHHHhc
Q 027918 151 --YG---IKFFETSAKT--NLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 151 --~~---~~~~~~Sa~~--~~~i~~l~~~l~~~~~~~~~ 182 (217)
.+ -++|.+|+.+ ..++..|.+.|.+.+..++.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 23 3788999876 45788888888887766544
No 303
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.34 E-value=2.5e-11 Score=101.57 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------ch-
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TI- 80 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~- 80 (217)
..+.+..++|+|+|.+|+||||++|.|++.... .......++.........++ ..+.|+||||..... ..
T Consensus 112 ~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeI 189 (763)
T TIGR00993 112 QDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKI 189 (763)
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHH
Confidence 344566789999999999999999999997543 22222223333333334455 689999999966431 11
Q ss_pred ---hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918 81 ---TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE 134 (217)
Q Consensus 81 ---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~ 134 (217)
...++. ..|++++|.+++.......-..+++.+...++.. ..+|||+|+.|...
T Consensus 190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112333 4799999988764333222334666666655422 45799999999653
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=8.5e-12 Score=89.75 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=45.3
Q ss_pred EEEEeeCCCccc----ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918 65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130 (217)
Q Consensus 65 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~ 130 (217)
.+.|+||||... ....+..++..+|++|+|.++++.-+-.+...+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 589999999643 3356777889999999999999866555555555555444 34488889984
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.31 E-value=1.1e-10 Score=92.05 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=64.9
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS 142 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~ 142 (217)
+.+.|+||+|...-.. .....+|.++++.+...++.+..+. ..+. ...-++|+||+|+...... ....
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHHH
Confidence 6889999999762222 2456799999997644444333222 1111 1223899999998542211 1111
Q ss_pred HHHHHHHH-------hCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 143 KGQALADE-------YGIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 143 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
+....... ...+++.+||+++.|++++++.|.+.+..
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22222221 11479999999999999999999987653
No 306
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=1.3e-11 Score=90.57 Aligned_cols=151 Identities=20% Similarity=0.239 Sum_probs=90.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--------
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------- 77 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------- 77 (217)
.++|+|+|.+|.|||||+|+|+...... ....|..+......+.-++...+++++||||....
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 3899999999999999999998754322 22334444455555666787889999999992211
Q ss_pred ------------------cchhhhccc--CCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC-CCC
Q 027918 78 ------------------RTITTAYYR--GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DES 135 (217)
Q Consensus 78 ------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl-~~~ 135 (217)
.......+. ..|+++|.+..+. .++.-+.- ++..+.. -..|+-|+-|.|- .-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence 111122333 3566666666543 23222211 2222222 2456777789993 223
Q ss_pred CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
++....+.++.-...+++.+++-.+.+-..-+..+
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~l 235 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTL 235 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccchhHHHH
Confidence 44455566666677788888887766544333333
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.5e-11 Score=101.48 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC------------Ce----EEEEEEeeCCCcccccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRT 79 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~~~~ 79 (217)
+-++|+|.-.+|||-|+..+-+..+......+.+..+....+... ++ ---+.++||||++.|..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 569999999999999999998866654444443333322222221 11 12478899999999999
Q ss_pred hhhhcccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------ChHH-
Q 027918 80 ITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV------------PTSK- 143 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~------------~~~~- 143 (217)
+..+...-+|++|+|+|+... .+++. ++.++.. +.|+||.+||+|....-... ...-
T Consensus 556 lRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 556 LRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 999999999999999999764 33332 2334443 78999999999953211000 0011
Q ss_pred ----------HHHHHHH-h-------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 144 ----------GQALADE-Y-------------GIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 144 ----------~~~~~~~-~-------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+.+|+.. + -+.++++||..|+|+.+|+.+|++.......
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 1111111 0 1468899999999999999999887655433
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.1e-11 Score=103.12 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.++.-+|.|+|..++|||||..+|+...- ........++......+.+.+ ...++|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 46677999999999999999999865210 011233445555555666664 47999999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ 145 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 145 (217)
|-+|.......++-.|++++|+|+...-....-.-|.+.... ++|.++++||+|..........++++
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~a~~~~~~~~l~ 153 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLGADFYLVVEQLK 153 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccccChhhhHHHHH
Confidence 999999999999999999999999886544444445444333 79999999999976544443444433
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.30 E-value=4.8e-11 Score=85.33 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=83.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEE---------------EEEEEC-------------------
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------------RTIELD------------------- 60 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~------------------- 60 (217)
.+.|.|.|++|||||+|+.+++..-.......-.+.+.+. ..+...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4799999999999999999986532211111111111111 000000
Q ss_pred -CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCC
Q 027918 61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKR 137 (217)
Q Consensus 61 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~~~~ 137 (217)
.....+.|++..|+- -. .-.+.-..+.-|+|+|....+.. -+...+. ..=++|+||.|+.. ..
T Consensus 93 ~~~~~Dll~iEs~GNL--~~-~~sp~L~d~~~v~VidvteGe~~----------P~K~gP~i~~aDllVInK~DLa~-~v 158 (202)
T COG0378 93 DFPDLDLLFIESVGNL--VC-PFSPDLGDHLRVVVIDVTEGEDI----------PRKGGPGIFKADLLVINKTDLAP-YV 158 (202)
T ss_pred cCCcCCEEEEecCcce--ec-ccCcchhhceEEEEEECCCCCCC----------cccCCCceeEeeEEEEehHHhHH-Hh
Confidence 001345555555521 11 11111233478888888766421 1110000 12289999999965 33
Q ss_pred ccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 138 AVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
..+.+.+.+-+++.+ .+++++|+++|+|++++++|+...
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 344455555555543 799999999999999999998764
No 310
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.29 E-value=3.7e-11 Score=92.29 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCCCccccc----
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR---- 78 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~---- 78 (217)
|+++|.||+|||||+|+|.+........+.++.+.....+.+.+.+ ..+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999987765556666666666666654421 359999999954311
Q ss_pred ch---hhhcccCCcEEEEEEeCC
Q 027918 79 TI---TTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 79 ~~---~~~~~~~~d~~i~v~d~~ 98 (217)
.+ ....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 223457899999999874
No 311
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.4e-11 Score=94.09 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=106.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEE--------------------EEE----CCeEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRT--------------------IEL----DGKRIK 65 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~ 65 (217)
...++|..+|.-.-|||||...|.+-- +++......++..-+.. ... ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 456999999999999999999997711 11111111111100000 000 012357
Q ss_pred EEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cC
Q 027918 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VP 140 (217)
Q Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~ 140 (217)
+.|+|.|||+-..+....-..-.|++++|++++.+ ++-+++.. +.-.. -..+|+|-||+|+...++. ..
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A----leIig--ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA----LEIIG--IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH----Hhhhc--cceEEEEecccceecHHHHHHH
Confidence 99999999987666554445567999999999874 34443332 33332 2467888999999653222 33
Q ss_pred hHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 027918 141 TSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184 (217)
Q Consensus 141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 184 (217)
.+++++|.+.- +.+++++||..+.|+|-+++.|.+.+.....+.
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 45566665533 479999999999999999999988876554443
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.24 E-value=1e-10 Score=88.11 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=43.5
Q ss_pred EEEEEeeCCCcccc-------------cchhhhccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918 64 IKLQIWDTAGQERF-------------RTITTAYYR-GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK 129 (217)
..+.|+|+||.... ..+...|++ ..+++++|+|+...-.-.+...+.+.+.. .+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 57899999996421 123445666 45688899988653332222233333333 36899999999
Q ss_pred CCCCC
Q 027918 130 ADMDE 134 (217)
Q Consensus 130 ~Dl~~ 134 (217)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99754
No 313
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=2e-11 Score=89.05 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-----chhhhcccCC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGA 88 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~ 88 (217)
.-||+++|.+|||||++=..++.+... .+.-.+.++++.-..+++-|. ..+++||.+|++.+- ......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 348999999999999996666543322 444556666666666666543 689999999998542 2345688999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-CCCccChHH----HHHHHHHhCCeEEEEcCC
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-SKRAVPTSK----GQALADEYGIKFFETSAK 161 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~-~~~~~~~~~----~~~~~~~~~~~~~~~Sa~ 161 (217)
+++++|||++..+-..++..+-..+.... .+...+.+...|.|+.. +.+....++ ...+....++.++++|..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 99999999998876666665544333322 23466888899999853 222222222 222223334567777766
Q ss_pred CC
Q 027918 162 TN 163 (217)
Q Consensus 162 ~~ 163 (217)
+.
T Consensus 163 De 164 (295)
T KOG3886|consen 163 DE 164 (295)
T ss_pred hH
Confidence 53
No 314
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.22 E-value=3.9e-10 Score=87.94 Aligned_cols=139 Identities=20% Similarity=0.275 Sum_probs=86.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---cch
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---RTI 80 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~ 80 (217)
..++|+++|+.|+|||||+|.|++...... ..++..+..+...+.-++..+.++++||||...+ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 348999999999999999999998633221 2355556666666666888899999999993221 011
Q ss_pred h-----------hh--------------cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 81 T-----------TA--------------YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 81 ~-----------~~--------------~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
| .. .=...|+++|.+..+.- .+..+. ..+..+.. .+.+|-|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence 1 11 11357888888876542 222221 12233333 356788888999632
Q ss_pred -CCCccChHHHHHHHHHhCCeEEE
Q 027918 135 -SKRAVPTSKGQALADEYGIKFFE 157 (217)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~ 157 (217)
+......+.+......+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 22333445566666777888874
No 315
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=1.6e-10 Score=90.70 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=63.2
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TS 142 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~ 142 (217)
+.+.|+||+|.... .......+|.++++.... +.+++......+. +.|.++|+||+|+........ ..
T Consensus 127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence 67899999985421 223456678777774433 3344444333332 467899999999864321100 00
Q ss_pred ----HHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 143 ----KGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 143 ----~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
....+... ...+++.+||+++.|+++++++|.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00111111 1236899999999999999999988744
No 316
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.21 E-value=2.2e-11 Score=93.11 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=104.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~ 83 (217)
..-.-|.|+|..|+||||||+.|......+...-+.+.+........... -.+.+.||-|.- .|++. ..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT-Le 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT-LE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence 34468999999999999999999977666665666666666666555433 368889999933 23332 22
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN----KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
....+|+++.|.|+++|..-......+..+....-...| ++=|=||+|....... ..+++ -+.+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~is 322 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGIS 322 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--ccccc
Confidence 456899999999999998766555566666555322222 3556688886332111 11222 46889
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (217)
+.+|+|++++.+.+-..+..
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999998887776654
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.6e-10 Score=86.54 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------------CeEEEEEEeeCCCccc--
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQER-- 76 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~-- 76 (217)
-+++.|+|.||+|||||+|.+..........|..|++...-.+.+. -....+.|+|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3789999999999999999999988766777888888776665541 1236799999998432
Q ss_pred -----ccchhhhcccCCcEEEEEEeCCC
Q 027918 77 -----FRTITTAYYRGAMGILLVYDVTD 99 (217)
Q Consensus 77 -----~~~~~~~~~~~~d~~i~v~d~~~ 99 (217)
.......-++.+|+++.|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 22334445689999999999763
No 318
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.3e-10 Score=87.37 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=86.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--------
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------- 77 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------- 77 (217)
.+.++++|+.|.|||||||.|+...+.. ....+..+......+.-+|..++++++||||....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 4899999999999999999998864432 23334455555555666788899999999992211
Q ss_pred ----------c-------chhhhcc--cCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-C
Q 027918 78 ----------R-------TITTAYY--RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-K 136 (217)
Q Consensus 78 ----------~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~-~ 136 (217)
. .+.+.-+ ...|+++|.+..+.- .+..+.- ....+.. .+.+|-|+.|.|.... .
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK----KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc----cccccceeeccccCCHHH
Confidence 0 0111122 267888888887542 1211111 2222222 4677888889996331 2
Q ss_pred CccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 137 RAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
.......+...+...++++|......
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCc
Confidence 22334445555666677766554443
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=8e-10 Score=88.02 Aligned_cols=152 Identities=22% Similarity=0.195 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
-|+-.|.-.-|||||+..+.+..- .+....+.+++.....+...+ ..+.|+|.||++++-.....-+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 577889999999999999988543 345566777777777776665 489999999999887777777788999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH---hCCeEEEEcCCCCCCHH
Q 027918 94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---YGIKFFETSAKTNLNVE 167 (217)
Q Consensus 94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~ 167 (217)
|++.++. ++.+.+. +.+... ....++|+||+|..++.+ ..+.++..... ...++|.+|+++|.|++
T Consensus 80 vV~~deGl~~qtgEhL~-----iLdllg-i~~giivltk~D~~d~~r--~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 80 VVAADEGLMAQTGEHLL-----ILDLLG-IKNGIIVLTKADRVDEAR--IEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEeCccCcchhhHHHHH-----HHHhcC-CCceEEEEeccccccHHH--HHHHHHHHHhhcccccccccccccccCCCHH
Confidence 9999754 3333332 122222 134589999999866321 12222222222 23688999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 168 QVFFSIARDIK 178 (217)
Q Consensus 168 ~l~~~l~~~~~ 178 (217)
++.+.|.+..-
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999988874
No 320
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.14 E-value=1.9e-09 Score=87.77 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=81.5
Q ss_pred EEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHh----cCC
Q 027918 52 FKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQH----ASD 119 (217)
Q Consensus 52 ~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~----~~~ 119 (217)
+....+.+ ++ ..+.++|++|+..-+.-|.+++.+++++|||+++++-+ ....+..-+..+... .-.
T Consensus 225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 44455556 55 78999999999999999999999999999999986521 122333333333222 224
Q ss_pred CCcEEEEEeCCCCC-----CCC----------Cc--cChHHHHHHHHHh------------CCeEEEEcCCCCCCHHHHH
Q 027918 120 NVNKVLVGNKADMD-----ESK----------RA--VPTSKGQALADEY------------GIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 120 ~~pvivv~nK~Dl~-----~~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~l~ 170 (217)
+.|+||++||.|+. ... .. ...+.+..|.... .+.++.++|.+..++..+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 78999999999962 111 11 2334444443321 1356789999989999999
Q ss_pred HHHHHHH
Q 027918 171 FSIARDI 177 (217)
Q Consensus 171 ~~l~~~~ 177 (217)
+.+.+.+
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 8887653
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=7.6e-10 Score=91.91 Aligned_cols=116 Identities=26% Similarity=0.274 Sum_probs=84.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------cccceeeeEEEEEEE---ECCeEEEEEEeeCC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----------------FITTIGIDFKIRTIE---LDGKRIKLQIWDTA 72 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~ 72 (217)
+...+|.++|.-+.|||+|+..|........ ...+.++.....++. .+++..-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 4567899999999999999999976543221 111222222222322 25667889999999
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl 132 (217)
||..+.......++.+|++++|+|+...-++..-+-+ ......+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~i----khaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERII----KHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHH----HHHHhccCcEEEEEehhHH
Confidence 9999999888899999999999999877655443332 3333347999999999995
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.09 E-value=1.2e-09 Score=84.13 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=38.1
Q ss_pred CcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 121 VNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 121 ~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
.+-++|+||+|+... .....+......+.. ..+++.+|+++|+|++++++||..
T Consensus 231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455999999998541 112233333333333 378999999999999999999876
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.4e-09 Score=78.88 Aligned_cols=143 Identities=19% Similarity=0.190 Sum_probs=91.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC----------------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
...++|..+|.-+-|||||...+..- ..++.... ++.+....+.+.-....+..+|+||+..
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCChHH
Confidence 45799999999999999997776431 11122222 3444444454543446889999999999
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCccC--hHHHHHHHHHhC-
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVP--TSKGQALADEYG- 152 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~- 152 (217)
|-.....-..++|+.|+|+++.+......-.-. .+.+.. +.| +++++||+|+.++..-.. ..+..++..+++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 987776667789999999999985432222211 122222 455 456679999976433222 334556666665
Q ss_pred ----CeEEEEcCC
Q 027918 153 ----IKFFETSAK 161 (217)
Q Consensus 153 ----~~~~~~Sa~ 161 (217)
.|++.-||.
T Consensus 164 ~gd~~Pii~gSal 176 (394)
T COG0050 164 PGDDTPIIRGSAL 176 (394)
T ss_pred CCCCcceeechhh
Confidence 467777764
No 324
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.00 E-value=8.4e-10 Score=82.80 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=83.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCccc---------------ceeeeEEEEEEEECCe-----
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGS-----------FTTSFIT---------------TIGIDFKIRTIELDGK----- 62 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~~----- 62 (217)
+.+.|.|.|+||+|||||++.|...- ++++... ......+...+-..+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 35799999999999999999985410 0010000 0011222222222111
Q ss_pred -------------EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918 63 -------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129 (217)
Q Consensus 63 -------------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK 129 (217)
.+.+.|++|.|.-. .-.....-+|.+++|......+...-++.-+-++. =++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence 14667777766311 11223456899999999877766555554333332 2899999
Q ss_pred CCCCCCCCccChHHHHHHHHH-----h--CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 130 ADMDESKRAVPTSKGQALADE-----Y--GIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
.|.+... ....+.+..... . ..+++.+||.++.|++++++.|.++....
T Consensus 177 aD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 177 ADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp -SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9963311 111222222211 1 14899999999999999999988765443
No 325
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.00 E-value=3.2e-09 Score=77.99 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=65.0
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHh
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEY 151 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~ 151 (217)
+..++..+++++|++++|+|+.++... |...+.... .+.|+++|+||+|+... .........+. ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence 567788899999999999999875421 222222222 35899999999998542 22233333333 223
Q ss_pred CC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 152 GI---KFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 152 ~~---~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+. .++.+||++|.|++++++.|.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 32 6899999999999999999988763
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.99 E-value=5.2e-09 Score=83.42 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=66.5
Q ss_pred chhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027918 79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (217)
.+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||..... ...........+..++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence 34455688999999999998775 44456777665533 3689999999999853211 12222333456788999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 027918 158 TSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~ 176 (217)
+||.++.|++++++.|...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999888643
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=6.5e-09 Score=82.77 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc--CCC--------------C------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD--GSF--------------T------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
-..+|+-.|.+|||||-.+|+- +.. . .....+..+...+..+.+++ ..++|.||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPG 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPG 90 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCC
Confidence 4678999999999999998753 100 0 01222333334444445555 7899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (217)
|+.|..-..+.+.-+|.++.|+|+.-.--.. ..++++-.+. .++||+=++||.|... ....+.+.++.+.+++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrl---R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRL---RDIPIFTFINKLDREG---RDPLELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhh---cCCceEEEeecccccc---CChHHHHHHHHHHhCc
Confidence 9999988888888999999999986532211 1222222222 3799999999999632 3345555566666554
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=4.1e-09 Score=82.19 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=67.4
Q ss_pred hhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC
Q 027918 82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 160 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (217)
...+.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+|+.+. ........+....+.+++.+||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~---~~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDD---EEEELELVEALALGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCCh---HHHHHHHHHHHhCCCeEEEEEC
Confidence 33578999999999999887 778888888776653 6899999999998542 1112223334456789999999
Q ss_pred CCCCCHHHHHHHHHH
Q 027918 161 KTNLNVEQVFFSIAR 175 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~ 175 (217)
+++.|+++++..|..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999887763
No 329
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.97 E-value=3.3e-09 Score=75.36 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027918 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 157 (217)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (217)
+.++++.++++|++++|+|+.++..... ..+...+.. .+.|+++|+||+|+.... .......+....+.+++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKE---VLEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCCCcEEE
Confidence 4567778889999999999987643222 122222222 257999999999984311 111111233345578999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 027918 158 TSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+||+++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987764
No 330
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4.3e-09 Score=77.68 Aligned_cols=165 Identities=20% Similarity=0.261 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---hhhhcccCCcEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMGIL 92 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~~i 92 (217)
++|+++|...+||||+-...+....+.. +-..+-......-.+.+.-+.+.+||.||+..+-. -....++...++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 6799999999999999888776543221 11111000111112233448999999999876432 2356789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccC-hHHH-----HHHHH----HhCCeEEEEcC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVP-TSKG-----QALAD----EYGIKFFETSA 160 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~-~~~~-----~~~~~----~~~~~~~~~Sa 160 (217)
||+|+.+. ..+.+..+...+.+.. ..++.+=+++.|.|...+...+. ...+ .+++. ...+.++.+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999753 3344444444443332 23567778899999643222222 1111 11111 12357788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q 027918 161 KTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
.+ ..+-|.|..+++.+.++.+.
T Consensus 186 yD-HSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhchh
Confidence 76 47889999999888876543
No 331
>PRK12288 GTPase RsgA; Reviewed
Probab=98.95 E-value=6.6e-09 Score=82.79 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=66.0
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
..++|.+++|++.....++..+..|+..+.. .++|+++|+||+|+...................+.+++.+||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877888999999876543 3689999999999954221111122223344567899999999999
Q ss_pred CHHHHHHHHHH
Q 027918 165 NVEQVFFSIAR 175 (217)
Q Consensus 165 ~i~~l~~~l~~ 175 (217)
|++++++.|..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988865
No 332
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.93 E-value=5.1e-09 Score=85.35 Aligned_cols=159 Identities=25% Similarity=0.443 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+|+.|+|..++|||+|+.+++...+.....+- + ..+...+..++....+.+.|.+|.. ...|-..+|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-G-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCc-C-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 489999999999999999999988776543332 2 2344555566666788888888732 33455678999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|...+..+++.+..+...+..+. ...+|+++++++.-... ..+.+...+...++..+ .+.+|++.+.+|.++...|.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999998888766664333 34688888888743321 12334444444444444 47899999999999999999
Q ss_pred HHHHHHHHH
Q 027918 172 SIARDIKQR 180 (217)
Q Consensus 172 ~l~~~~~~~ 180 (217)
.+...+...
T Consensus 183 ~~~~k~i~~ 191 (749)
T KOG0705|consen 183 EVAQKIVQL 191 (749)
T ss_pred HHHHHHHHH
Confidence 988877655
No 333
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.2e-08 Score=79.71 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=83.7
Q ss_pred ccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccc-eeeeEEEEEEEECCe----------------------
Q 027918 6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT-IGIDFKIRTIELDGK---------------------- 62 (217)
Q Consensus 6 ~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------------- 62 (217)
+......+..+-|+++|+=..||||+|+.|+...+.....-. .++++....+.-+..
T Consensus 49 ~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~F 128 (532)
T KOG1954|consen 49 ALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKF 128 (532)
T ss_pred cccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhh
Confidence 334556677889999999999999999999998876432211 122333332222111
Q ss_pred -----------------EEEEEEeeCCCccc-----------ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027918 63 -----------------RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114 (217)
Q Consensus 63 -----------------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 114 (217)
--.++|+||||.-+ |......|...+|.+|++||+.--+-..+....+..++
T Consensus 129 G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk 208 (532)
T KOG1954|consen 129 GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK 208 (532)
T ss_pred HHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh
Confidence 12689999999332 33445668889999999999865544445555555554
Q ss_pred HhcCCCCcEEEEEeCCCCCC
Q 027918 115 QHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 115 ~~~~~~~pvivv~nK~Dl~~ 134 (217)
.+ .-.+-||.||.|..+
T Consensus 209 G~---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 209 GH---EDKIRVVLNKADQVD 225 (532)
T ss_pred CC---cceeEEEeccccccC
Confidence 43 456789999999765
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=7.4e-09 Score=81.20 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=63.3
Q ss_pred cccCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
...++|.+++|+|+.++.... .+..|+..+.. .++|+++|+||+|+.+. . .............+.+++.+||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~-~-~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD-L-EEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC-H-HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 358999999999998876543 34667766654 26899999999998531 1 112233344556678999999999
Q ss_pred CCCHHHHHHHHH
Q 027918 163 NLNVEQVFFSIA 174 (217)
Q Consensus 163 ~~~i~~l~~~l~ 174 (217)
+.|++++++.|.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999988764
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.90 E-value=8.9e-09 Score=78.48 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=63.6
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--h
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--T 141 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~ 141 (217)
+.+.|++|.|.-.. --.....+|.+++|.-..-.+...-++.-+-++. =++|+||.|......... .
T Consensus 144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHHH
Confidence 45667777663211 1223456788887766655555554444333332 289999999643211100 0
Q ss_pred HHHH---HHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918 142 SKGQ---ALADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 142 ~~~~---~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
.... +.....+ .+++.+||.+|+|++++++.+.++.......
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 0011 1112223 3799999999999999999998887655444
No 336
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.89 E-value=5e-09 Score=78.84 Aligned_cols=157 Identities=20% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc-ceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccch
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI 80 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 80 (217)
.+..++++++|.+|+|||+|+|.+...+..-.... ..+.......+.++. .+.++|.||-. .+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 35568999999999999999999987654322222 223222223333333 78899999911 12233
Q ss_pred hhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---ccChHHHHH----H---
Q 027918 81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR---AVPTSKGQA----L--- 147 (217)
Q Consensus 81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~----~--- 147 (217)
...|+.+ .--+++++|++-+-.-.+.. .++.+.+ .++|+.+|+||+|...... .-....+.. +
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 3334432 23355566665432111111 1122233 3899999999999632211 000111111 1
Q ss_pred HHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 148 ADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
......+|+.+|+.++.|+++++-.+.+
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 1222357889999999999988655443
No 337
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1e-08 Score=80.30 Aligned_cols=156 Identities=15% Similarity=0.201 Sum_probs=95.0
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------CcccceeeeEEEEEEEEC------
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-----------------------SFITTIGIDFKIRTIELD------ 60 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~------ 60 (217)
.+.--.++++|+|...+|||||+-.|..+..+. ......+.+.....+.+.
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 333456899999999999999988875532211 011111222222222221
Q ss_pred ----CeEEEEEEeeCCCcccccchhhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 61 ----GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 61 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.....++|+|.+|+.+|.....+-+. ..|.+++|++++..-++.. ++-+-.+... ++|++++++|+|+.+
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVD 317 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeecccc
Confidence 11246899999999999877665554 4688899999887644322 2222233333 799999999999865
Q ss_pred CCC-----------------------ccChHHHHHHHH----HhCCeEEEEcCCCCCCHHHH
Q 027918 135 SKR-----------------------AVPTSKGQALAD----EYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 135 ~~~-----------------------~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l 169 (217)
... .-..+++-..+. .+-.|+|.+|+.+|+|++-+
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 311 011222222222 22358999999999998754
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.87 E-value=2.4e-08 Score=78.42 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=95.5
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC--------------CcccceeeeEEEEEEEECCe-----------
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------------SFITTIGIDFKIRTIELDGK----------- 62 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~----------- 62 (217)
..+.....+.|.+.|.-+.|||||+-.|.-...+. ......+-+.....+-+++.
T Consensus 110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~ 189 (527)
T COG5258 110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE 189 (527)
T ss_pred cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence 34455677999999999999999988875432211 01111111222222222111
Q ss_pred ----------EEEEEEeeCCCcccccchhhh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918 63 ----------RIKLQIWDTAGQERFRTITTA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130 (217)
Q Consensus 63 ----------~~~~~l~Dt~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~ 130 (217)
..-+.|+||.|++.|-..... +-.+.|..++++.+++.-+.- .++- +--......|+|+++||+
T Consensus 190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEH---Lgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEH---LGIALAMELPVIVVVTKI 265 (527)
T ss_pred HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHh---hhhhhhhcCCEEEEEEec
Confidence 136889999999987654332 335789999999998865421 1111 111112269999999999
Q ss_pred CCCCCCC-ccChHHHHHH----------------------HHHhC---CeEEEEcCCCCCCHHHHHHHH
Q 027918 131 DMDESKR-AVPTSKGQAL----------------------ADEYG---IKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 131 Dl~~~~~-~~~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|+.++.+ .-..+++..+ +.+.+ .|+|.+|+.+|+|++-+.+.+
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 9865421 1111222221 11111 589999999999987655443
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.1e-08 Score=71.53 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
+++++|.+|+|||||+|+|.+..... ...+.. +.....+..++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876542 222222 33334444544 5899999995
No 340
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=3.9e-07 Score=67.92 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 88 (217)
-+|+++|.|.+|||||+..+..-.........++.+.-.-.+.+++ ..+++.|.||.-+-. .......+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 6899999999999999999988665554455555666667777887 689999999954322 2334466889
Q ss_pred cEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEE-eCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918 89 MGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVG-NKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAK 161 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~pvivv~-nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (217)
|.++.|.|++..+.-. .+..-+..+--......|-|-+- .|..... +-.......++....++.+.--++--+
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 9999999998754322 23333444432222334544433 3332211 011233445555555554432222223
Q ss_pred CCCCHHHHHHH
Q 027918 162 TNLNVEQVFFS 172 (217)
Q Consensus 162 ~~~~i~~l~~~ 172 (217)
+...++++.+-
T Consensus 221 eD~t~DdfIDv 231 (364)
T KOG1486|consen 221 EDCTVDDFIDV 231 (364)
T ss_pred cCCChHHHHHH
Confidence 44444554443
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.79 E-value=2e-08 Score=72.37 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=40.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
...++|+|+|.||+|||||+|+|.+... .....++.+.... .+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeCC---CEEEEECcC
Confidence 4458999999999999999999998665 3444555544333 333333 688999999
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.78 E-value=3.8e-08 Score=79.18 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=68.6
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHHH
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALAD 149 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~----~~~~ 149 (217)
.+.|..+...+++.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.. .....+... .+++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence 4567777888889999999999997654 224455554433 579999999999854 222233333 3455
Q ss_pred HhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918 150 EYGI---KFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 150 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
..++ .++.+||++|.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 5665 48999999999999999998654
No 343
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.75 E-value=3.8e-08 Score=73.54 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=80.8
Q ss_pred eEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHhc----CC
Q 027918 51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE-------SSFNNIRNWIRNIEQHA----SD 119 (217)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~l~~~~----~~ 119 (217)
.+....+.++. ++++.+|.+|+..-+.-|...+.+..++|||+..+.- .+-+.+...++.+...+ -.
T Consensus 191 GIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 191 GIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 34555556655 7899999999999999999999999999999987652 12233333333333222 12
Q ss_pred CCcEEEEEeCCCCCCCC---------------------------CccCh--HHHHHHHHH-------------hCCeEEE
Q 027918 120 NVNKVLVGNKADMDESK---------------------------RAVPT--SKGQALADE-------------YGIKFFE 157 (217)
Q Consensus 120 ~~pvivv~nK~Dl~~~~---------------------------~~~~~--~~~~~~~~~-------------~~~~~~~ 157 (217)
-+.+|+++||.|+.... ....+ ..++.|.+. +-+-+.+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 46789999999973210 00000 111112111 0144678
Q ss_pred EcCCCCCCHHHHHHHHHHHHHH
Q 027918 158 TSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
+.|.+-+++..+|....+.+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 8899999999999887666543
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=3.6e-08 Score=70.11 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=37.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.++|+++|.+|+|||||+|+|.+.... ....+..+.. ...+..+. .+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence 478999999999999999999986543 3333433322 22233332 478999999
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.72 E-value=4.7e-08 Score=77.83 Aligned_cols=83 Identities=17% Similarity=0.031 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccc---
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER--- 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~--- 76 (217)
+++.|+|.|++|||||++.|.+... .....+..+.+.....+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999876 5444566666666666655442 24689999999543
Q ss_pred ----ccchhhhcccCCcEEEEEEeCC
Q 027918 77 ----FRTITTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 77 ----~~~~~~~~~~~~d~~i~v~d~~ 98 (217)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678999999999985
No 346
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.1e-07 Score=78.74 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=80.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
+..-+|.+.-.-.+||||+-++.+...- ........++......+.+. ...++++|||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGH 114 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGH 114 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCc
Confidence 3445799999999999999988754210 01112222333333333344 479999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
..|.-.....++-.|++++|+++..+---.....|.+.- ++ +.|.|.++||+|...
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-ry---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-RY---NVPRICFINKMDRMG 170 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-hc---CCCeEEEEehhhhcC
Confidence 999998899999999999999987754444445554433 33 789999999999643
No 347
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.69 E-value=1.5e-07 Score=86.18 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC------cccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhh
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITT 82 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~ 82 (217)
=.+|+|++|+||||+|+.- +-.+.-. ...+.+.+. ...+.+.+ .-.++||+|.. .....|.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence 3799999999999999987 3333211 111111111 23334444 45589999932 1223454
Q ss_pred hcc---------cCCcEEEEEEeCCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 83 AYY---------RGAMGILLVYDVTDE-----S----SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 83 ~~~---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.++ +-.+++|+++|+.+- + ....++..+.++....+...||+||+||+|+..
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 443 348999999997542 1 124555667777777777899999999999754
No 348
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.68 E-value=8.4e-08 Score=74.26 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=66.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC---------------eEEEEEEeeCCCcccc-
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQERF- 77 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~~~- 77 (217)
+.++|.|||.|++|||||+|.|.+........|..+++.....+.+.. ....++++|++|.-.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 668999999999999999999999988888888888888877766522 2468999999984321
Q ss_pred ------cchhhhcccCCcEEEEEEeCCC
Q 027918 78 ------RTITTAYYRGAMGILLVYDVTD 99 (217)
Q Consensus 78 ------~~~~~~~~~~~d~~i~v~d~~~ 99 (217)
..-....++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1223335678999999988654
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=1.1e-07 Score=68.54 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=39.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
...++++++|.+|+|||||+|+|.+..+. ....+..+.. ...+..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence 34579999999999999999999987653 2223333333 3333443 35889999994
No 350
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.3e-07 Score=73.84 Aligned_cols=58 Identities=28% Similarity=0.329 Sum_probs=42.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
...++|+|+|.||+|||||+|+|.+... .....++.+... ..+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999998765 344455554443 3344443 58899999964
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=1.3e-07 Score=67.23 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=56.7
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
.+.++|++++|+|+.++... ....+...+... ..+.|+++|+||+|+.... ........+........+.+||+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecccc
Confidence 46789999999999886421 112223333332 2258999999999985321 1111222222222234578999999
Q ss_pred CCHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDI 177 (217)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (217)
.|++++++.|.+..
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999987654
No 352
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.64 E-value=3.6e-06 Score=58.73 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=80.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCC-Ccc--------------cc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE--------------RF 77 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~--------------~~ 77 (217)
...++|.|.|+||+|||||+.++.+.--... ..- ..+....+.-+++.+-|.++|+. |.. +|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 3568999999999999999998875322211 111 23455566677888888888887 311 11
Q ss_pred c-----------chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH
Q 027918 78 R-----------TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA 146 (217)
Q Consensus 78 ~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~ 146 (217)
. ......+..+|++ ++|---+-- -....+...+......+.|+|.++.+.+. + .-.+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr-~-------P~v~~ 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSR-H-------PLVQR 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccC-C-------hHHHH
Confidence 0 1122344556643 445332211 11222444444444456888888876652 1 22223
Q ss_pred HHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 147 LADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
+.. .+--+++ .+..|=+.++..+.+.+
T Consensus 149 ik~-~~~v~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 149 IKK-LGGVYVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred hhh-cCCEEEE---EccchhhHHHHHHHHHh
Confidence 322 3333333 35555567777777655
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1e-07 Score=74.00 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=41.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
...++|+|+|.||+|||||+|+|.+.... ....++.+... ..+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999986643 33344444333 3344443 5799999996
No 354
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.64 E-value=6.2e-08 Score=71.14 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.+++++|.+|+|||||+|.|.+... .....++++ .....+.++. .+.|+||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence 5899999999999999999997542 223334433 3334444443 579999999
No 355
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.6e-07 Score=79.47 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 72 (217)
+...++.-+|+++-.-.-|||||+..|....- ......+.++....+. .-.+...++++|+|
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is--~~~~~~~~nlidsp 80 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS--LLHKDYLINLIDSP 80 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc--cccCceEEEEecCC
Confidence 34556778999999999999999999865321 1112223333332222 22234789999999
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
||..|.+......+-+|++++++|+...-...+..-+ ++...++...++|+||+|
T Consensus 81 ghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 81 GHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWIEGLKPILVINKID 135 (887)
T ss_pred CccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHHccCceEEEEehhh
Confidence 9999999998888899999999999876544433332 222223567899999999
No 356
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=8.1e-09 Score=81.86 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC--------CCCCC--------cccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS--------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
.-+|.|+..-.+||||.-.+++.- .++.. ....-++.+....+.++.+...++++||||+..|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 347999999999999999988651 11110 11112344555555555555899999999999999
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (217)
-....+++-.|+++.|||.+..-....+..|.+ ....++|-+.++||+|..... ..........+++.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an---fe~avdsi~ekl~a 184 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN---FENAVDSIEEKLGA 184 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh---hhhHHHHHHHHhCC
Confidence 999999999999999999987655556666643 333478999999999964322 22334444455554
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.7e-07 Score=66.59 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=37.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
...+++++|.+++|||||+|++.+..... ..++.+.......+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 34789999999999999999999755332 222333333222233333 699999999
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.59 E-value=3.2e-07 Score=66.21 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=63.6
Q ss_pred CCCcc-cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027918 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (217)
Q Consensus 71 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (217)
.||+. +........+.++|++++|+|+.++....+. .+...+ .+.|+++|+||+|+.+. . ......++..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~-~--~~~~~~~~~~ 72 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADP-K--KTKKWLKYFE 72 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCCh-H--HHHHHHHHHH
Confidence 35543 3334456678899999999999876432211 122211 14689999999998531 1 1111112223
Q ss_pred HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 150 EYGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
..+..++.+||+++.|++++.+.|...+.
T Consensus 73 ~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 73 SKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred hcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 33457899999999999999999888764
No 359
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-06 Score=73.64 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred EEEEeeCCCccc---ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918 65 KLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (217)
Q Consensus 65 ~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 141 (217)
.+.++|.||... ...-...+..++|++|+|.++.+.-+.... .++...... .+.|+|+.||.|...+ ...-.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---KpniFIlnnkwDasas-e~ec~ 281 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---KPNIFILNNKWDASAS-EPECK 281 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---CCcEEEEechhhhhcc-cHHHH
Confidence 578899999653 334345577899999999999775543332 233333322 3556777789997542 22222
Q ss_pred HHHHHHHHHhC--------CeEEEEcCCC
Q 027918 142 SKGQALADEYG--------IKFFETSAKT 162 (217)
Q Consensus 142 ~~~~~~~~~~~--------~~~~~~Sa~~ 162 (217)
+++.....++. -.+|+||+++
T Consensus 282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 282 EDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 22222222222 3578888653
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.9e-07 Score=73.74 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=81.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
.+.+-++|+|+||+||||||+.|...-...+.....+ .++ .+.++...++|..+|.. ... .....+-+|+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence 4557788999999999999999876432221111111 122 24556679999999932 223 334557799999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCccChHHHH----HHHHH--hCCeEEEEcCCC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVPTSKGQ----ALADE--YGIKFFETSAKT 162 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~ 162 (217)
+++|.+-.=-.+.+. +++.+..+ ++| |+-|+|+.|+..... .....-. .|..+ .|+.+|.+|-..
T Consensus 139 LlIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 139 LLIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999987543333332 33334333 455 667889999865221 1111111 22222 257888888754
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=5.4e-07 Score=63.93 Aligned_cols=85 Identities=22% Similarity=0.119 Sum_probs=54.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+... ....+....+.......++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 689999999887654321 2221 1112236899999999998431 1001111223223345789999999999999
Q ss_pred HHHHHHHHHH
Q 027918 169 VFFSIARDIK 178 (217)
Q Consensus 169 l~~~l~~~~~ 178 (217)
+++.+.+...
T Consensus 76 L~~~i~~~~~ 85 (155)
T cd01849 76 KESAFTKQTN 85 (155)
T ss_pred HHHHHHHHhH
Confidence 9999877654
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=74.28 Aligned_cols=57 Identities=30% Similarity=0.306 Sum_probs=42.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
..++++|+|.||+|||||||+|.+.... ....|+.| .....+..+. .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCcC
Confidence 3478999999999999999999997764 34455444 4444455554 48999999954
No 363
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.53 E-value=4.8e-06 Score=66.86 Aligned_cols=141 Identities=17% Similarity=0.235 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC--------------CCCccc-------ceeee---EEEEEEEE-CCeEEEEEEee
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF--------------TTSFIT-------TIGID---FKIRTIEL-DGKRIKLQIWD 70 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~--------------~~~~~~-------~~~~~---~~~~~~~~-~~~~~~~~l~D 70 (217)
+=|.|||+-.+||||||++|...-+ ++-+.+ |+... .....+.+ ++..+++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 7799999999999999999965111 000111 11111 11223333 46678999999
Q ss_pred CCCcc--------c------ccchhh---------------hccc--CCcEEEEEEeCCC----hhhHHHH-HHHHHHHH
Q 027918 71 TAGQE--------R------FRTITT---------------AYYR--GAMGILLVYDVTD----ESSFNNI-RNWIRNIE 114 (217)
Q Consensus 71 t~G~~--------~------~~~~~~---------------~~~~--~~d~~i~v~d~~~----~~s~~~~-~~~~~~l~ 114 (217)
+-|-. + ...-|- ..+. ..-++++.-|.+= ++.+... .+.+++|.
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 98711 0 011111 1112 2234555444321 3333333 33566666
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 115 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 115 ~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
.. +.|+++++|-.+ +......+...++..+++++.+.+++..
T Consensus 178 ~i---gKPFvillNs~~---P~s~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 178 EI---GKPFVILLNSTK---PYSEETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred Hh---CCCEEEEEeCCC---CCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence 55 789999999877 3455566778888889999999988754
No 364
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.53 E-value=1.5e-07 Score=69.35 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=80.9
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKA 130 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~ 130 (217)
..+.+.++|.+|+..-+.-|.+++.+.-.++|++.++.- ...+.-..++..+-.+ .-.+.+||++.||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 347888999999999999999999998888888776542 1222222333333222 12468999999999
Q ss_pred CCCCC---------------CCccChHHHHHHHHHh----C------CeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918 131 DMDES---------------KRAVPTSKGQALADEY----G------IKFFETSAKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 131 Dl~~~---------------~~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (217)
|+.++ ....+.+.+.+|..+. + +.-.++.|.+-+|+.-+|..+.+.+.+..
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 97542 1233455666665443 1 22356778888999999999988887653
No 365
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=8.6e-07 Score=68.84 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=92.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc---C-------CCCC----CcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD---G-------SFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
...++|.-+|.-.-|||||-..+.. . .+.+ .....-++.+....+.+......+.=.|+||+..|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999666533 1 1111 012233455555566555444567778999999988
Q ss_pred chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHhC----
Q 027918 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQALADEYG---- 152 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~---- 152 (217)
.....-....|+.|+|+.++|......-+- + .+.+..+ -..+++++||.|+.++..-.. .-+++++..+++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEH-l-LLArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREH-L-LLARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHH-H-HHHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 777667778999999999999653222111 1 1223222 135677789999975443322 233556666665
Q ss_pred -CeEEEEcCC
Q 027918 153 -IKFFETSAK 161 (217)
Q Consensus 153 -~~~~~~Sa~ 161 (217)
+|++.-||.
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 688877763
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=9.7e-08 Score=67.41 Aligned_cols=58 Identities=26% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (217)
.++++|++|+|||||+|.|...... .....+..+......+...+ ...|+||||...+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 6899999999999999999986321 11111212222223334433 3578999996543
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.50 E-value=3.7e-07 Score=64.76 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=38.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
....+|+++|.+|+|||||+|.|.+... .....+..+..... +..+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 3457899999999999999999998653 22333343333332 3333 3689999999
No 368
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=6.5e-07 Score=67.67 Aligned_cols=59 Identities=25% Similarity=0.480 Sum_probs=45.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.++|+.+|..|.|||||+..|++-.+... ..+.+......+.+.-.+..++++|+||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 48999999999999999999999877533 234444444455555577889999999998
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.46 E-value=5.8e-06 Score=62.27 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=53.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcc-cceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccc------hhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRT------ITT 82 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~------~~~ 82 (217)
.+..-|.|+|++++|||+|+|.|++. .+..... ...+..+........ +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 44567999999999999999999998 5542221 222222322222221 1236899999999654322 122
Q ss_pred hcccC--CcEEEEEEeCCCh
Q 027918 83 AYYRG--AMGILLVYDVTDE 100 (217)
Q Consensus 83 ~~~~~--~d~~i~v~d~~~~ 100 (217)
..+.. ++++||..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 23333 7888887776543
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.45 E-value=1.2e-06 Score=68.21 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCccc-ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027918 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 149 (217)
Q Consensus 71 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (217)
.|||.. ........+..+|++++|+|+..+.+.... .+...+ . +.|+++|+||+|+.+. . .......+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-~kp~IiVlNK~DL~~~--~-~~~~~~~~~~ 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-NKPRLIVLNKADLADP--A-VTKQWLKYFE 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-CCCEEEEEEccccCCH--H-HHHHHHHHHH
Confidence 366552 233456677899999999999776443221 111112 1 5799999999998531 1 0111122223
Q ss_pred HhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 150 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
..+.+++.+|++++.|++++.+.|.+.+...
T Consensus 75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 3456789999999999999999988877544
No 371
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=4e-06 Score=62.58 Aligned_cols=162 Identities=18% Similarity=0.244 Sum_probs=104.1
Q ss_pred eEEEEEcCCCC--cHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 16 IKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 16 ~~I~v~G~~~~--GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+-++|+|-+|+ ||.+|+.+|....+.....+...++++..++.-......+.+.-.+-.+++............++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 56899999998 9999999999988887766666666666555433322333333333222222222223344567899
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-------------------------------------
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------------------------------------- 136 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~------------------------------------- 136 (217)
+||++....+..+..|+....... .+ -.+.++||.|.....
T Consensus 85 vfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 999999888888888865432211 01 124567888853210
Q ss_pred ------CccChHHHHHHHHHhCCeEEEEcCCC------------CCCHHHHHHHHHHHHHH
Q 027918 137 ------RAVPTSKGQALADEYGIKFFETSAKT------------NLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~l~~~l~~~~~~ 179 (217)
.-.......+++.++++.+++.++.+ ..|+..+|..|..++.+
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 00223456788889999999988842 25788888888776654
No 372
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.39 E-value=6.8e-06 Score=67.79 Aligned_cols=135 Identities=17% Similarity=0.267 Sum_probs=82.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------------------------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------------------------------------- 42 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~------------------------------------------------- 42 (217)
.++.++|+|+|+..+||||.+..+.....-+
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4678999999999999999999886521100
Q ss_pred -----CcccceeeeEEEEEEEECCeE-EEEEEeeCCCcc-------------cccchhhhcccCCcEEEEEEeCCChhhH
Q 027918 43 -----SFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSF 103 (217)
Q Consensus 43 -----~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~ 103 (217)
+...+.+.....+.+.+.|.. -.+.++|.||.- ....+..++..+.+++|+|+.-...+.-
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 000111222233333333322 468899999932 2234567788999999999764332221
Q ss_pred H-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH
Q 027918 104 N-NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE 150 (217)
Q Consensus 104 ~-~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (217)
. .+.. .+....+.+...|+|.+|.|+.+ ....++..++.+...
T Consensus 465 RSnVTD---LVsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleG 508 (980)
T KOG0447|consen 465 RSIVTD---LVSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEG 508 (980)
T ss_pred hhhHHH---HHHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhc
Confidence 1 1222 23344455778899999999966 334556666666553
No 373
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=1.6e-06 Score=67.82 Aligned_cols=102 Identities=23% Similarity=0.210 Sum_probs=66.5
Q ss_pred eCCCccc-ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027918 70 DTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA 148 (217)
Q Consensus 70 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~ 148 (217)
-.|||.. ........+..+|++++|+|+..+.+... .++..+. . +.|+++|+||+|+.+. . ..+....+.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~--~-~~~~~~~~~ 76 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADP--E-VTKKWIEYF 76 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCH--H-HHHHHHHHH
Confidence 3567653 22345567789999999999977644222 1111111 1 5799999999998531 1 112222223
Q ss_pred HHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 149 DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
...+.+++.+|++++.|++++.+.|.+.+...
T Consensus 77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 34457789999999999999999888877554
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.37 E-value=1.2e-06 Score=61.19 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=51.2
Q ss_pred hhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 82 TAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
...+.++|++++|+|+.++.+.. .+..|+... . .+.|+++|+||+|+... . .......+....+..++++|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~-~--~~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTE-E--QRKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCH-H--HHHHHHHHHHhcCCeEEEEE
Confidence 34578899999999998876533 333343322 1 36899999999998431 1 12233444555567899999
Q ss_pred CCCCCC
Q 027918 160 AKTNLN 165 (217)
Q Consensus 160 a~~~~~ 165 (217)
|.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998753
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.37 E-value=9e-07 Score=70.71 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCC-cccc-----eeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTS-FITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
++|+|.+|+|||||||+|++.....+ ..+. -.++....-+.+.+ ...|+||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~---~~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH---GGDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC---CCEEEECCCCCccc
Confidence 78999999999999999997643211 1111 11112222233332 12489999976543
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=4.3e-06 Score=66.07 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=55.4
Q ss_pred EEEEEeeCCCcccccch----hhhc--------ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
+.+.|+||||....... ...+ -...+..++|+|++... +.+... ..+.... .+--+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECCC
Confidence 57999999996532221 1111 12467789999998543 223221 2222211 24478899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
... ..-.+...+...+.|+..++ +|++++++
T Consensus 271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 432 12334455566789988888 78888776
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=3.1e-06 Score=60.25 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++++|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3689999999999999998764
No 378
>PRK01889 GTPase RsgA; Reviewed
Probab=98.35 E-value=2.9e-06 Score=68.19 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=59.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKT 162 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (217)
...++|.+++|+++..+-....+..++..+... +.+.+||+||+||.++ ..+....+.. ..+.+++.+|+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~----~~~~~~~~~~~~~g~~Vi~vSa~~ 181 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCED----AEEKIAEVEALAPGVPVLAVSALD 181 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC----HHHHHHHHHHhCCCCcEEEEECCC
Confidence 357899999999997544455666666655554 6788999999999642 1112222222 3457899999999
Q ss_pred CCCHHHHHHHHH
Q 027918 163 NLNVEQVFFSIA 174 (217)
Q Consensus 163 ~~~i~~l~~~l~ 174 (217)
+.|++++..+|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999888774
No 379
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=68.94 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=88.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeE--------------------EEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDF--------------------KIR 55 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~--------------------~~~ 55 (217)
..++|+|+|.-.+|||||+-.|..... ..-..+.++.++ .+.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 458999999999999999877754221 111122222111 111
Q ss_pred EEEECCeEEEEEEeeCCCcccccchhhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 56 TIELDGKRIKLQIWDTAGQERFRTITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 56 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
.+-.+ ....++|+|..|+++|-.....- =...|..++++-++..-- .-.++-+..... ..+|+++|++|+|+-
T Consensus 212 kIce~-saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa---L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICED-SAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA---LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccc-cceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence 11111 12468999999999986644322 234677777777654311 001111111112 268999999999974
Q ss_pred CCCCccChHHHHHH-----------------------------HHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 134 ESKRAVPTSKGQAL-----------------------------ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 134 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
.+ .+..+.++.+ ..+.-+++|.+|-.+|.+++-+ ......+..+.+
T Consensus 287 PA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~~ 361 (641)
T KOG0463|consen 287 PA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRRQ 361 (641)
T ss_pred cH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCcccc
Confidence 32 1222222222 1222367999999999998654 344444444433
No 380
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.34 E-value=7e-06 Score=61.64 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-------cchhhhcccCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 88 (217)
-++.++|.|.+|||||+..+.+..........++.....-.+.+++ -++++.|.||.-+- ........+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999998665533333333333444455666 68999999994321 12334456778
Q ss_pred cEEEEEEeCCC
Q 027918 89 MGILLVYDVTD 99 (217)
Q Consensus 89 d~~i~v~d~~~ 99 (217)
+.+++|.|..-
T Consensus 138 nli~~vld~~k 148 (358)
T KOG1487|consen 138 NLIFIVLDVLK 148 (358)
T ss_pred cEEEEEeeccC
Confidence 88999998654
No 381
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.9e-08 Score=72.93 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=77.0
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA- 138 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~- 138 (217)
..+.|+|+||++...+....-..-.|++++++..+. +++.+.+.. +.... =..++++-||+||..++..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa----veiM~--LkhiiilQNKiDli~e~~A~ 198 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA----VEIMK--LKHIIILQNKIDLIKESQAL 198 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH----HHHhh--hceEEEEechhhhhhHHHHH
Confidence 468899999998766654444445677888877765 344554443 22221 1467888999998653322
Q ss_pred cChHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918 139 VPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
...+.+..|...- +.|++++||--++|++-+.++|++.+.-...+
T Consensus 199 eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 199 EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 2245556665543 46999999999999999999999888654433
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=4.2e-06 Score=67.57 Aligned_cols=92 Identities=24% Similarity=0.347 Sum_probs=59.6
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH----HHHHhC
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LADEYG 152 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~ 152 (217)
|...........+.+++|+|+.+.. ..|...+.+... +.|+++|+||+|+.. .....+.+.. ++...+
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcC
Confidence 4443333323334899999997743 224445554433 579999999999854 2222333333 344555
Q ss_pred C---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918 153 I---KFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 153 ~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
+ .++.+||+++.|++++++.|.+.
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4 68999999999999999998654
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=98.33 E-value=2.1e-06 Score=68.12 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=55.3
Q ss_pred EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|....... ...+. ...|.+++|+|+..... .......+.... ..--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCC---
Confidence 46899999996542221 11221 25688899999876432 222222232221 12468899999633
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
..-.+..++...+.|+.+++ +|.+++++.
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 12233344555688888887 788888774
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.31 E-value=1.7e-05 Score=64.75 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc------CCC---CC-Cc-----------ccceeeeEEEEEEEEC-------------
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD------GSF---TT-SF-----------ITTIGIDFKIRTIELD------------- 60 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~------~~~---~~-~~-----------~~~~~~~~~~~~~~~~------------- 60 (217)
.--|+++|++|+||||++..|.. ..+ .. .+ ....+..++......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 35799999999999999998863 111 00 00 0001111111110001
Q ss_pred CeEEEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 61 GKRIKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.....+.|+||+|........ ..+ ....+-+++|+|+....... .....+... -.+--+|+||.|...
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence 013689999999955332211 111 23467899999987553222 122233322 135578899999632
Q ss_pred CCCccChHHHHHHHHHhCCeEEEEc
Q 027918 135 SKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..=.+.......+.|+.+++
T Consensus 254 -----rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 -----KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred -----CccHHhhhHHHHCCCeEEEc
Confidence 11223334445555555443
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.29 E-value=1.2e-05 Score=62.28 Aligned_cols=94 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred EEEEEeeCCCcccccchhh----h---c-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 64 IKLQIWDTAGQERFRTITT----A---Y-----YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~----~---~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
..+.|+||||......... . . -...|.+++|+|++... +.+.. ...+.+.. .+--+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 5789999999654332211 1 1 12378899999997542 22322 22333222 13478899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
-.. ..-.+..+....+.|+.+++ +|++++++.
T Consensus 229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 533 12234445556678888887 777776653
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.29 E-value=1.8e-06 Score=69.60 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
.+|+|+|.+|+|||||+|+|++... .....+.++.. ...+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999997432 22333444433 33444433 367999999653
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=1.4e-06 Score=70.34 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
.++.|+|.+|+|||||||+|+.... .....+++|. ....+.+++ ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~--~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL--DKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc--eeEEEEcCC---CcEEEECCCcc
Confidence 3799999999999999999986421 1223344333 334444444 24799999964
No 388
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.27 E-value=1.8e-06 Score=65.85 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++++|.+|+|||||+|.|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999999753
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.22 E-value=2.4e-06 Score=68.34 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=33.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC-Ccccc-----eeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
++|+|++|+|||||||.|++..... ...+. -.++....-+...+. ..|+||||..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~ 235 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFN 235 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcc
Confidence 8999999999999999999754321 11121 011222233333321 2689999974
No 390
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=8.8e-06 Score=73.48 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=67.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC-CCCCC----cccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhc
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG-SFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY 84 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~ 84 (217)
-+|||++|+||||++..---. ++... .....+ .....+.+.+ .-.++||.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 589999999999997654221 11111 111111 1222344444 56678988822 223345443
Q ss_pred ---------ccCCcEEEEEEeCCCh------h---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 85 ---------YRGAMGILLVYDVTDE------S---SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 85 ---------~~~~d~~i~v~d~~~~------~---s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.+-.+++|+.+|+.+- + ....++.-+.++....+...||++++||.|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2468999999997652 1 123344456667666677899999999999854
No 391
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6.8e-06 Score=65.30 Aligned_cols=156 Identities=17% Similarity=0.082 Sum_probs=94.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (217)
...++++|+|.-.+||||+-..+... .-.+.....-+.+.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 45689999999999999996665330 01112222223333333333333
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHHHHHH--HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~--~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
..+++.|+||+..|-.....-..++|+.++|+++.-.+ .|+.--+ -...+....+ -...|+++||+|-+...
T Consensus 157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 58999999999988877777778899999999884322 1222111 1112222222 24678999999954322
Q ss_pred Cc-----cChHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q 027918 137 RA-----VPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 137 ~~-----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 171 (217)
.. ...+.+..|.+..+ ..++++|..+|.++.+..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11 11233444444333 5789999999999887654
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=2.4e-05 Score=62.87 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEE------------------EEEEEE---------CCeEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFK------------------IRTIEL---------DGKRIK 65 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~---------~~~~~~ 65 (217)
-.++++|++|+||||++.+|...... .......+.+.+ ...+.- .-....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 47899999999999999998753211 001111111111 001100 001247
Q ss_pred EEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-----CCcEEEEEeCCCCCC
Q 027918 66 LQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-----NVNKVLVGNKADMDE 134 (217)
Q Consensus 66 ~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-----~~pvivv~nK~Dl~~ 134 (217)
+.|+||+|....+... ..+ .....-.++|++++... +.+...+..+...... ..+--+|+||.|-..
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8999999965433221 111 12234568888887643 2233333333322110 012357789999422
Q ss_pred CCCccChHHHHHHHHHhCCeEEEEc
Q 027918 135 SKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..=.+..+....+.|+.+++
T Consensus 296 -----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 -----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred -----CccHHHHHHHHHCcCeEEEe
Confidence 33344556666676655554
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=2.8e-05 Score=60.18 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=65.7
Q ss_pred hhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918 80 ITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
+.+--..+.|-+++|+++.+|+ +...+..++-..... ++..+|++||+||.++..... ++........+.+.+.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEe
Confidence 3344445677788888888876 455566655555443 567788899999976433222 45566677788999999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (217)
|++++.+++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999988776543
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=4.5e-06 Score=64.42 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
-.+++|.+|+|||||+|+|... .++.....+-.++....-+.+.+ -=.|+||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~---gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG---GGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC---CCEEEeCCCCCccC
Confidence 5789999999999999999863 22233323333334445555532 12468999975443
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=6.7e-06 Score=64.28 Aligned_cols=59 Identities=27% Similarity=0.253 Sum_probs=36.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-c-----cceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (217)
-.++++|++|+|||||+|.|.+....... . .+..+......+...+ ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 36999999999999999999985432211 1 1111222223334432 2358999998654
No 396
>PRK13695 putative NTPase; Provisional
Probab=98.11 E-value=0.00013 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
++|+|+|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998754
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.00019 Score=59.99 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccc-----------------eeeeEEEEEEEE---------CCeE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITT-----------------IGIDFKIRTIEL---------DGKR 63 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~-----------------~~~~~~~~~~~~---------~~~~ 63 (217)
-.|+|+|++|+||||++..|...-. ......+ .+..+. .... .-..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD 428 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence 4789999999999999988864210 0000000 011111 1000 0013
Q ss_pred EEEEEeeCCCcccccchhh------hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|......... .... ....++|++... +..++...+..+... .+.-+|+||.|-..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~--- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG--- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence 6789999999643322111 0111 234567777753 334444444444332 35679999999522
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHHHhcccCC
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQRLADTDS 186 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~~~~~~~~ 186 (217)
..-.+..+....+.++.+++ +|..+ +++ -..|++.+.......++
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~ 548 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAADK 548 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhccC
Confidence 22445555666677665554 34444 222 23455555544444333
No 398
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=7.8e-06 Score=64.26 Aligned_cols=57 Identities=28% Similarity=0.285 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc-ccc-----eeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
.++++|++|+|||||+|.|.+.....+. .+. ..+......+...+ ...++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 5899999999999999999875432211 111 01112222233333 247899999753
No 399
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.6e-05 Score=64.99 Aligned_cols=132 Identities=21% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC------------CC----CCcccceeeeEEEEEEEE--------------CC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS------------FT----TSFITTIGIDFKIRTIEL--------------DG 61 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~ 61 (217)
..+.-++-|+..-.-|||||-..|.... +. .......++....+.+.+ ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 3455678999999999999998885421 11 112223333322222222 33
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 141 (217)
..+.++++|.||+-.|.+.....++-.|++++|+|..+.-....-..+.+.+.. .+.-++|.||.|..--+.+.+.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence 458899999999999999999999999999999998876443333333344433 3444778999995433445555
Q ss_pred HHHHHH
Q 027918 142 SKGQAL 147 (217)
Q Consensus 142 ~~~~~~ 147 (217)
++....
T Consensus 172 EeLyqt 177 (842)
T KOG0469|consen 172 EELYQT 177 (842)
T ss_pred HHHHHH
Confidence 555443
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.06 E-value=1.7e-05 Score=56.86 Aligned_cols=134 Identities=21% Similarity=0.290 Sum_probs=65.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeC-CCcc---------------ccc--
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE---------------RFR-- 78 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~~---------------~~~-- 78 (217)
||++.|++|+|||||+++++..-.. ...+..+ ++...+..++.++-+.+.|. .|.. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998753211 1112222 33344445555566666666 3311 011
Q ss_pred -----chhhhcc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCccChHHHHHHH
Q 027918 79 -----TITTAYY----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA-DMDESKRAVPTSKGQALA 148 (217)
Q Consensus 79 -----~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~-Dl~~~~~~~~~~~~~~~~ 148 (217)
......+ ..++ ++|+|---+-- .....|.+.+......+.|++.++-+. +. ...+.+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence 1101111 3344 66667322100 011223444444444568888888765 32 2344566
Q ss_pred HHhCCeEEEEcCCCCCC
Q 027918 149 DEYGIKFFETSAKTNLN 165 (217)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~ 165 (217)
...++.++.++..+-+.
T Consensus 146 ~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDA 162 (168)
T ss_dssp TTTTSEEEE--TTTCCC
T ss_pred hCCCcEEEEeChhHHhh
Confidence 66678888887665443
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.05 E-value=7.7e-06 Score=66.85 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=43.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
.+.|.+||.||+||||+||.|.+.+. +.+.+|+.+..+. ++.+.. .+.|.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEcCC---CceecCCCCcc
Confidence 68999999999999999999998754 4666666664444 444444 68899999954
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.02 E-value=0.00011 Score=53.02 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=45.1
Q ss_pred EEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+|++|...+.... ..+ ....+.+++|++...... ...+...+.+.. + ...+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 468889999974322111 111 124889999999865432 223333333322 2 24677899996431
Q ss_pred ccChHHHHHHHHHhCCeEEE
Q 027918 138 AVPTSKGQALADEYGIKFFE 157 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (217)
...+...+...++|+..
T Consensus 155 ---~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 ---GGAALSIRAVTGKPIKF 171 (173)
T ss_pred ---cchhhhhHHHHCcCeEe
Confidence 12222356666666543
No 403
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.01 E-value=2.6e-05 Score=56.88 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred EEEEEeeCCCcccccc-------hhhhccc-C-CcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 64 IKLQIWDTAGQERFRT-------ITTAYYR-G-AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~-------~~~~~~~-~-~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
-.+.++|.||+-+... +..+.-+ + --.++|+++..= -++...+.-.+..+.....-.+|-|=|.+|.||.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 3688999999765321 1111111 1 123455555421 1333344444444544444478999999999985
Q ss_pred CCCCccChHHHHHH-------------------------------HHHhC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918 134 ESKRAVPTSKGQAL-------------------------------ADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 134 ~~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (217)
.+ ..+++++.| ...++ +.+++....+.+.++.++..|-.++.-..
T Consensus 178 k~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~E 254 (273)
T KOG1534|consen 178 KD---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGE 254 (273)
T ss_pred hh---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 43 111111111 11223 46788888888888888888777776554
Q ss_pred cccCCCC
Q 027918 182 ADTDSRS 188 (217)
Q Consensus 182 ~~~~~~~ 188 (217)
....+.+
T Consensus 255 d~E~k~~ 261 (273)
T KOG1534|consen 255 DLEPKEP 261 (273)
T ss_pred ccCccCC
Confidence 4433333
No 404
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.95 E-value=1.1e-05 Score=59.43 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=50.1
Q ss_pred EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|....... ...++ ...+-+++|.+++... +.+..+.. ...... +--+++||.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~~---~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAFG---IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHSS---TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhccc---CceEEEEeecCCC---
Confidence 46899999995543221 11111 1467788999987654 33332222 223221 2357799999422
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
..-.+..++...+.|+-.++ +|.++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred --CcccceeHHHHhCCCeEEEE--CCCCh
Confidence 33446667777788776664 34444
No 405
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.94 E-value=4.8e-05 Score=43.56 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=31.1
Q ss_pred cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 86 RGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
.-.++++|++|++.. .+.+....++.+++..+. +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 346889999999864 457777778888888886 589999999998
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=0.00032 Score=55.56 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=52.7
Q ss_pred EEEEEeeCCCcccccchhhh-----cc---cCCcEEEEEEeCCChhhHHH-H-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 64 IKLQIWDTAGQERFRTITTA-----YY---RGAMGILLVYDVTDESSFNN-I-RNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
....++++.|...=...... .+ -..|+++-|+|+.+-..... . .....++... + +||+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---D---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---c---EEEEecccCC
Confidence 45667777775442221111 11 24577999999865433211 1 1222233221 2 8899999997
Q ss_pred CCCCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHH
Q 027918 134 ESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 170 (217)
++. ..+..+...+..+ .+++.++. .+.+..+++
T Consensus 159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAE---ELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 643 2445555566655 57777777 333444444
No 407
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.91 E-value=6.7e-05 Score=52.74 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=34.8
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
..+.|+||+|.. .....++..+|.++++...+-.+.+.-++- ..+.. -=++++||.|
T Consensus 92 ~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence 678899998853 222347788998888888763333221111 11211 1278899987
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=4.1e-05 Score=63.00 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=47.7
Q ss_pred EEEEEeeCCCcccccchh----hh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK 136 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~ 136 (217)
..+.|+||+|........ .. ....+|.+++|+|++... +.......+... .+ .-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~a-- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGTA-- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCCC--
Confidence 378999999965433211 11 133578899999987642 222222223221 23 357789999532
Q ss_pred CccChHHHHHHHHHhCCeEEEEcC
Q 027918 137 RAVPTSKGQALADEYGIKFFETSA 160 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (217)
..=.+..+....+.|+.+++.
T Consensus 247 ---~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 ---KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cccHHHHHHHHHCcCEEEEec
Confidence 123344556666776665543
No 409
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=5.9e-05 Score=60.79 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC---------CCC------------cccceeeeEEEEEEEE----------C-CeE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTS------------FITTIGIDFKIRTIEL----------D-GKR 63 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~---------~~~------------~~~~~~~~~~~~~~~~----------~-~~~ 63 (217)
-.|+|+|++|+||||++..|...-. ..+ +....+..+.... .. . ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEEAR 320 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHHHHHHhccC
Confidence 5799999999999999999864110 000 0000111111000 00 0 012
Q ss_pred EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|....... ...++ ...+.+++|+|++... .++..+...+... ..--+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 57899999996432211 12222 2356778888875432 3344444444331 22367899999432
Q ss_pred ccChHHHHHHHHHhCCeEEEEc
Q 027918 138 AVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..=.+..++...+.|+..++
T Consensus 392 --k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 --SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred --CccHHHHHHHHHCcCEEEEe
Confidence 23344556666777665554
No 410
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.83 E-value=0.00023 Score=56.46 Aligned_cols=85 Identities=9% Similarity=0.124 Sum_probs=45.6
Q ss_pred EEEEEeeCCCcccccchhhhccc--------CCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
....++++.|...-......++. ..+.++.|+|+.+.... ........++.. .+ +||+||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence 45677888886654333332211 24789999998653221 111112222222 12 88999999865
Q ss_pred CCCccChHHHHHHHHHhC--CeEEEEc
Q 027918 135 SKRAVPTSKGQALADEYG--IKFFETS 159 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~S 159 (217)
+ .+......+..+ .+++.++
T Consensus 165 ~-----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E-----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H-----HHHHHHHHHHhCCCCEEEEec
Confidence 2 134555555544 4666543
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.83 E-value=3.7e-05 Score=59.34 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
.+..++++|+|.||+|||||||.+..... .....++.+..+... +.+... -.+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence 35668999999999999999998865322 233445555444332 333332 25899999994
No 412
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00017 Score=58.97 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC---CCccc--------------------ceeeeEEEEE---------EEECCeE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFIT--------------------TIGIDFKIRT---------IELDGKR 63 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~--------------------~~~~~~~~~~---------~~~~~~~ 63 (217)
-.|+++|++|+||||++..|.+.... ..... ..+....... .... .
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~--~ 269 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR--G 269 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--C
Confidence 48999999999999999988653110 00000 0000000000 0001 2
Q ss_pred EEEEEeeCCCccccc----chhhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.++||+|..... .....+. ...+-.++|+|++... +.+..++..+... -.--+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~----~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH----GIHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence 467899999954321 1122221 2234577888887432 3334433333221 23367899999422
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
..=.+..++...+.++..++ +|.++
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 33344556667777765554 45555
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.77 E-value=0.00034 Score=56.34 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=79.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC--C-CCcccceeeeEEEE-----------------EEEE----------CCeEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIR-----------------TIEL----------DGKRI 64 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~----------~~~~~ 64 (217)
.=.|++|||.|+||||-+-+|...-. . .......+++.+-+ .+.. .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 34699999999999999998876433 1 11111112222111 0000 00135
Q ss_pred EEEEeeCCCcccccchh----hhcccC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCC
Q 027918 65 KLQIWDTAGQERFRTIT----TAYYRG--AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKR 137 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK~Dl~~~~~ 137 (217)
.+.|+||.|...++... ..++.. ..-+.+|++++.. .+++...+..+... |+ =+++||.|=..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~--- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT--- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC---
Confidence 79999999966554332 223322 2335667777643 36666666555432 32 47789999211
Q ss_pred ccChHHHHHHHHHhCCe--EEEEcCCCCCCHHHH-HHHHHHHHHHH
Q 027918 138 AVPTSKGQALADEYGIK--FFETSAKTNLNVEQV-FFSIARDIKQR 180 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--~~~~Sa~~~~~i~~l-~~~l~~~~~~~ 180 (217)
..=.+.....+.+.| |+..-..=.+++... -++|++.+..-
T Consensus 353 --s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 353 --SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred --chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 222333444444544 443333334444433 35566655443
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.76 E-value=0.00024 Score=58.56 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=50.4
Q ss_pred EEEEEeeCCCccccc----chhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
..+.|+||+|..... .....++. ...-+++|++++... ..+...+..+... + +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 578999999965432 11222322 234567778875432 3344433333321 1 2368899999422
Q ss_pred CccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 137 RAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
..-.+..+....++|+..++ +|.++
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22356677777888776654 44454
No 415
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.73 E-value=3.4e-05 Score=61.33 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=44.2
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 74 (217)
....-+++.|+|.|++||||+||.|..+... ....++.+ .....+..+. .+.|.|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence 3456699999999999999999999987653 44455554 3344455554 7999999994
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.71 E-value=0.00045 Score=56.82 Aligned_cols=86 Identities=20% Similarity=0.117 Sum_probs=49.5
Q ss_pred EEEEEeeCCCcccccchhh----h--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTITT----A--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|........- . ..-..+.+++|+|+... .+...+...+..... ..-+|.||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~---i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG---LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC---CCEEEEeCccCcc---
Confidence 5689999999543322111 1 12346788999998754 333333344433221 2367799999522
Q ss_pred ccChHHHHHHHHHhCCeEEEEcC
Q 027918 138 AVPTSKGQALADEYGIKFFETSA 160 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (217)
..-.+..+....+.|+.++..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 112366677777887766554
No 417
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00021 Score=57.45 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=46.3
Q ss_pred EEEEEeeCCCcccccchh----hhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|........ ..+.. ..+.+++|.++. ....++..++..+.. -.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence 588999999975433221 12222 345666776653 223344443333221 123367899999432
Q ss_pred ccChHHHHHHHHHhCCeEEEEc
Q 027918 138 AVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..=.+..++...+.|+..++
T Consensus 357 --~~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEe
Confidence 23445566677777766654
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.68 E-value=0.00047 Score=44.21 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=44.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-hhhcccCCcEEEEEEe
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d 96 (217)
|++.|..|+||||+...+...-... ..+. ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988886532211 1111 1111 6888999986533221 1345567888888888
Q ss_pred CCCh
Q 027918 97 VTDE 100 (217)
Q Consensus 97 ~~~~ 100 (217)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7653
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.67 E-value=0.00039 Score=57.25 Aligned_cols=86 Identities=19% Similarity=0.104 Sum_probs=47.9
Q ss_pred EEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|........ ..+ .-..+.+++|+|+.... +.......+.... + ..-+|+||.|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~--- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDA--- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 579999999954322111 111 12467789999986542 2333333333321 1 2357789999532
Q ss_pred ccChHHHHHHHHHhCCeEEEEcC
Q 027918 138 AVPTSKGQALADEYGIKFFETSA 160 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa 160 (217)
..-.+.......+.|+.++..
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 112255666777787766654
No 420
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00041 Score=47.90 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-.++|.|++|+|||+|++.+.+.-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00052 Score=55.98 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC-CC----C-----Cc------------ccceeeeEEEEE-E-E----ECCeEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS-FT----T-----SF------------ITTIGIDFKIRT-I-E----LDGKRIKLQ 67 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~-~~----~-----~~------------~~~~~~~~~~~~-~-~----~~~~~~~~~ 67 (217)
.-|+|+|++|+||||++.+|.... .. . +. ....+....... . . .......+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 00 0 00 001111111000 0 0 011125789
Q ss_pred EeeCCCcccccc----hhhhccc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918 68 IWDTAGQERFRT----ITTAYYR-----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (217)
Q Consensus 68 l~Dt~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~ 138 (217)
|+||+|...... .+..++. ..+-.++|+|++... +.+......+... -+--+|+||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~---- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD---- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence 999999643211 1122221 234578899987653 2333333333221 23368899999422
Q ss_pred cChHHHHHHHHHhCCeEEEEcC--CCCCCHHHH
Q 027918 139 VPTSKGQALADEYGIKFFETSA--KTNLNVEQV 169 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~l 169 (217)
..=.+..+....+.|+..++. .=.+++...
T Consensus 374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A 405 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence 223355566677777655543 333444443
No 422
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.57 E-value=0.00047 Score=45.18 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 18 I~v~G-~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
|.|.| ..|+||||+...+...-.. ...+. ..+..+.. ..+.|+|+|+... ......+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56777 5689999997776542211 11111 11122211 5789999998643 223356778999999888
Q ss_pred CCChhhHHHHHHHHH
Q 027918 97 VTDESSFNNIRNWIR 111 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~ 111 (217)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 455666666555
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00029 Score=61.51 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC--C-cccceeeeEEE---------------EEEE-E-----------CCeEEEE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFKI---------------RTIE-L-----------DGKRIKL 66 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~--~-~~~~~~~~~~~---------------~~~~-~-----------~~~~~~~ 66 (217)
-|+++|+.|+||||++.+|....... . .....+.+.+- ..+. . .-....+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 58999999999999999987532100 0 00000011000 0000 0 0012478
Q ss_pred EEeeCCCccccc----chhhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC
Q 027918 67 QIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 140 (217)
Q Consensus 67 ~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~ 140 (217)
.|+||+|..... .....+ ....+-.++|+|++... +.+......+...... -+--+|+||.|-.. .
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~-~i~glIlTKLDEt~-----~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGE-DVDGCIITKLDEAT-----H 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccC-CCCEEEEeccCCCC-----C
Confidence 999999933221 111111 12345678899887532 3333333333322111 13367899999432 2
Q ss_pred hHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHH
Q 027918 141 TSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQ 179 (217)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~ 179 (217)
.=.+..+....+.|+.+++ +|.+| +++ -+.+.+.+..
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 3344556667777766654 45555 343 2445555554
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.53 E-value=7.3e-05 Score=54.14 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=97.52 E-value=8.1e-05 Score=53.43 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999864
No 426
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=8.4e-05 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 427
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.50 E-value=0.015 Score=41.44 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=96.2
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
+.+..+.-.|+++|..+.++..|...+...... +. ..+.... ... .|. +... .-...
T Consensus 9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-sLP-----Lp~--e~~~----lRprI 65 (176)
T PF11111_consen 9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-SLP-----LPS--ENNN----LRPRI 65 (176)
T ss_pred cCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-cCC-----Ccc--cccC----CCcee
Confidence 445567789999999999999999999863211 11 1111110 000 011 1111 12468
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|.++|++|.....++..++.-+..+...+-.+ .+.++++-.... ..-.+..+++.+++..+.++++.+.....++...
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 99999999999999998888777775444333 355666555432 2456788999999999999999999888877666
Q ss_pred HHHHHHHHH
Q 027918 169 VFFSIARDI 177 (217)
Q Consensus 169 l~~~l~~~~ 177 (217)
+-..|.+.+
T Consensus 144 lAqRLL~~l 152 (176)
T PF11111_consen 144 LAQRLLRML 152 (176)
T ss_pred HHHHHHHHH
Confidence 666665554
No 428
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.46 E-value=0.0013 Score=55.53 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
=+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999764
No 429
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.00066 Score=50.61 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=33.2
Q ss_pred hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
+.....+|.+|+|+|.+. +++...++......... -.++.+|+||.|
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~ 196 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVD 196 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence 345578999999999974 56666655544444442 268999999998
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00012 Score=52.85 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
+|+|+|++|||||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.002 Score=52.46 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=49.9
Q ss_pred EEEEEeeCCCcccccc----hhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRT----ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
..+.|+||+|...... ....++.. .+-.++|+|++... ..+...+...... .+--+++||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 5799999999553322 11122221 22578899987653 3444433333221 23468899999422
Q ss_pred CccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 137 RAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
..=.+..++...+.|+..++ +|.++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22334455666677665543 45555
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.00028 Score=58.73 Aligned_cols=151 Identities=14% Similarity=0.150 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC--C-cccceeeeEE------------------EEEEEE---------CCeEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFK------------------IRTIEL---------DGKRIK 65 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~--~-~~~~~~~~~~------------------~~~~~~---------~~~~~~ 65 (217)
--|+++|++|+||||++..|....... . .......+.+ ...... +-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 369999999999999999987521100 0 0000000110 000000 001136
Q ss_pred EEEeeCCCcccccc---hhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027918 66 LQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 139 (217)
Q Consensus 66 ~~l~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~ 139 (217)
+.++||+|...... .....+.. ..-.++|+|++... ..+......+.. ...--+|+||.|-..
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~----- 405 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA----- 405 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc-----
Confidence 78999999332221 11111111 22367888886432 333333222222 123467789999422
Q ss_pred ChHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHH
Q 027918 140 PTSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQ 179 (217)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~ 179 (217)
..-.+..+....+.++.+++ +|.++ +++ -+.|++.+..
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 33445566677777766554 56666 444 2445555554
No 433
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.43 E-value=0.00075 Score=46.88 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=60.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC
Q 027918 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (217)
Q Consensus 19 ~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 98 (217)
+.-|..|+|||++.-.+...-. .......-.+.. .........+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3457889999999666543211 000111111110 0001111578999999753 333456788899999998886
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 99 DESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 99 ~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
..++..+...++.+..... ..++.+|+|+.+
T Consensus 78 -~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~ 108 (139)
T cd02038 78 -PTSITDAYALIKKLAKQLR-VLNFRVVVNRAE 108 (139)
T ss_pred -hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 3445555555555544332 457789999987
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.00094 Score=51.62 Aligned_cols=132 Identities=19% Similarity=0.186 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC---------C------------CcccceeeeEEEEEEEE-----------CCeE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------T------------SFITTIGIDFKIRTIEL-----------DGKR 63 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~~-----------~~~~ 63 (217)
-+|+++|++|+||||++..+...-.. . .+....+..+... ... ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999998887542100 0 0000011111100 000 0013
Q ss_pred EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|....... +..++ ...+-+++|+|++... +++..++..+... .+--+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~----~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence 68899999996532211 12222 2345688899986432 3344444444321 23468899999432
Q ss_pred ccChHHHHHHHHHhCCeEEEEc
Q 027918 138 AVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..-.+..++...+.|+..++
T Consensus 226 --~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 --SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred --CccHHHHHHHHHCcCEEEEe
Confidence 22344455666777765554
No 435
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.42 E-value=0.0022 Score=46.44 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999853
No 436
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.40 E-value=0.0013 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.+|.|.-|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4788899999999999999753
No 437
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.40 E-value=3.8e-05 Score=56.96 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=40.7
Q ss_pred EEEEEEeeCCCcccc----cchh--hhcccCCcEEEEEEeCCC------hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918 63 RIKLQIWDTAGQERF----RTIT--TAYYRGAMGILLVYDVTD------ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130 (217)
Q Consensus 63 ~~~~~l~Dt~G~~~~----~~~~--~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~ 130 (217)
+-.+.++|+||+-+. .+++ -..+.+.+.-+.++.+.| +.. .+..++..+........|-|=|+.|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~--~iS~lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSK--FISSLLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHH--HHHHHHHHHHHHHhhcccchhhhhHh
Confidence 347889999997653 2222 123334555555555433 433 34444445555554468889999999
Q ss_pred CCC
Q 027918 131 DMD 133 (217)
Q Consensus 131 Dl~ 133 (217)
|+.
T Consensus 174 Dl~ 176 (290)
T KOG1533|consen 174 DLL 176 (290)
T ss_pred HHH
Confidence 974
No 438
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.39 E-value=0.00087 Score=44.23 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh
Q 027918 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES 101 (217)
Q Consensus 22 G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 101 (217)
+..|+||||+...|...-.........-. ....... ..+.|+|+|+... ......+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~-----d~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLV-----DLDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEE-----ECCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence 45679999987766542111101111111 1111111 1789999998643 23345667889999888776 45
Q ss_pred hHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027918 102 SFNNIRNWIRNIEQHASD-NVNKVLVGNK 129 (217)
Q Consensus 102 s~~~~~~~~~~l~~~~~~-~~pvivv~nK 129 (217)
+...+..+++.+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 667777777777665433 3466777774
No 439
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.38 E-value=0.00014 Score=50.50 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 027918 18 LLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~ 37 (217)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 440
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.29 E-value=0.011 Score=42.65 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=51.1
Q ss_pred EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027918 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 144 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 144 (217)
.+.|+|+|+.... .....+..+|.+|++++.+. .++..+..+++.+.... .....+|+|+.+-.. ....+..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV 135 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence 6899999975432 23445678999999988764 44555556666665432 234678899988422 1222223
Q ss_pred HHHHHHhCCeEE
Q 027918 145 QALADEYGIKFF 156 (217)
Q Consensus 145 ~~~~~~~~~~~~ 156 (217)
..+.+..+.+++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 445555666654
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00028 Score=42.67 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 442
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.27 E-value=0.003 Score=45.73 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=59.4
Q ss_pred EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027918 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 142 (217)
Q Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 142 (217)
.+.+.|+|+|+... ......+..+|.+++++..+. .+...+..+++.+... +.|+.+|+|+.|... ....
T Consensus 92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~ 161 (179)
T cd03110 92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE 161 (179)
T ss_pred CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence 36899999997542 233455678999999998874 4566666766666554 567889999998532 2345
Q ss_pred HHHHHHHHhCCeEEE
Q 027918 143 KGQALADEYGIKFFE 157 (217)
Q Consensus 143 ~~~~~~~~~~~~~~~ 157 (217)
+..++.+..+++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 667777777877653
No 443
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.27 E-value=0.00014 Score=56.36 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------------------
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------------------- 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------------- 76 (217)
.+++|+|++|.|||++++++....-.. .... . ..+.+..+.+|....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 589999999999999999998754221 1111 0 112444444543111
Q ss_pred -----ccchhhhcccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 027918 77 -----FRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS-DNVNKVLVGNK 129 (217)
Q Consensus 77 -----~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~-~~~pvivv~nK 129 (217)
........++...+-++|+|--.. .+....+..++.++.... -++|+|.||+.
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 112223466778888999985431 233444455555554432 36899999986
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.25 E-value=0.00022 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00027 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|++|||||||++++.+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999998743
No 446
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.23 E-value=0.00015 Score=57.85 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=50.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc--chhhhcccCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--TITTAYYRGAM 89 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~d 89 (217)
..-|-|.++|.||+||||+||+|-...+. ..+.++.+.--.+ +. ....+.|+|+||.---. +.....+ -
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY--It---LmkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY--IT---LMKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH--HH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence 34589999999999999999999887665 4445554311111 11 12478899999953221 2222222 2
Q ss_pred EEEEEEeCCChh
Q 027918 90 GILLVYDVTDES 101 (217)
Q Consensus 90 ~~i~v~d~~~~~ 101 (217)
+++=|=.+.+++
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 455666666654
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.23 E-value=0.00038 Score=40.85 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
..+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999987754
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.21 E-value=0.00031 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-|+|+|++|||||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999998743
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00033 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
=|.|+|++|+|||||++.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.18 E-value=0.00033 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999999875
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.17 E-value=0.00037 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 452
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.0003 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.=++|.||+|+|||||++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999999999866
No 453
>PRK06217 hypothetical protein; Validated
Probab=97.15 E-value=0.00043 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.14 E-value=0.0004 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 789999999999999999875
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.00045 Score=47.25 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT 42 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~ 42 (217)
-.++|+|++|+|||+++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 379999999999999999998765443
No 456
>PRK03839 putative kinase; Provisional
Probab=97.14 E-value=0.00038 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 457
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.00067 Score=54.10 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC----CCC------CCc-----------ccceeeeEEEEEEEE-------------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG----SFT------TSF-----------ITTIGIDFKIRTIEL------------- 59 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~----~~~------~~~-----------~~~~~~~~~~~~~~~------------- 59 (217)
.+--|+++|..|+||||.+-+|... .+. .+. ..-..+.++......
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 3346899999999999998887541 000 000 000011111110111
Q ss_pred CCeEEEEEEeeCCCcccccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHH
Q 027918 60 DGKRIKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRN 108 (217)
Q Consensus 60 ~~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~ 108 (217)
....+.+.|+||+|...... +.. .-.-..|-+|+|.|++-..+-+....
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 22237899999999433211 111 11235789999999987765444444
No 458
>PRK01889 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.00049 Score=55.51 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|.+|+|||||+|.|.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 79999999999999999998743
No 459
>PRK14530 adenylate kinase; Provisional
Probab=97.08 E-value=0.0005 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999964
No 460
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.08 E-value=0.00051 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.+.|+|++|+|||||+|.+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 799999999999999999987
No 461
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.08 E-value=0.0021 Score=44.09 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.08 E-value=0.00053 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.06 E-value=0.00055 Score=47.44 Aligned_cols=21 Identities=52% Similarity=0.775 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.06 E-value=0.00051 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998765
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.00052 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 466
>PRK13949 shikimate kinase; Provisional
Probab=97.05 E-value=0.00057 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
+|+|+|++||||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.04 E-value=0.0033 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~ 39 (217)
|+|+|++||||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 468
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.04 E-value=0.00083 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
+...-|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 33467999999999999999999863
No 469
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00049 Score=47.64 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...++|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3457999999999999999999974
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.01 E-value=0.00065 Score=44.70 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027918 17 KLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~ 36 (217)
-++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999986
No 471
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.00 E-value=0.003 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..+|+|.|.+|||||||++.|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998743
No 472
>PRK14532 adenylate kinase; Provisional
Probab=97.00 E-value=0.00065 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
++|+++|+|||||||+..+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 473
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.99 E-value=0.00028 Score=61.01 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=73.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE--------------------------------------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-------------------------------------- 53 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 53 (217)
.-..+.|+|+|..++||||.++.+.+..+.+......+....
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 355679999999999999999999885543321111110000
Q ss_pred ---------------EEEEEE-CCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEEEEEEeCCChhhHH
Q 027918 54 ---------------IRTIEL-DGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSFN 104 (217)
Q Consensus 54 ---------------~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 104 (217)
...+.+ .-.-..++++|.||.. .+..+...|+...+.+|+.+...+.+ -
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ 183 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--I 183 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--h
Confidence 111111 1112578889999832 24556677888888888887765522 1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 105 NIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 105 ~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
....++.......+.+.-.+.|++|.|+.+
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 122255555555555666777888888643
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.0026 Score=49.97 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCC----CCCC-------------c----ccceeeeEEEEE-------EEE------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGS----FTTS-------------F----ITTIGIDFKIRT-------IEL------ 59 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~----~~~~-------------~----~~~~~~~~~~~~-------~~~------ 59 (217)
.++-|+++|-.|+||||-|-+|...- ...- . -.-.+.++-... +-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 46789999999999999998885510 0000 0 000000110000 001
Q ss_pred CCeEEEEEEeeCCCcccccch-------hhhcccC-----CcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEE
Q 027918 60 DGKRIKLQIWDTAGQERFRTI-------TTAYYRG-----AMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLV 126 (217)
Q Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~-----~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv 126 (217)
....+.+.|+||+|....... ..+.... .|=+++++|++.... +...+.+ ..... ---++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F----~eav~---l~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF----NEAVG---LDGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH----HHhcC---CceEE
Confidence 112368999999994322111 1112222 233777779887643 4433332 22211 12577
Q ss_pred EeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 127 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
+||.|... .... +..++...++|+.++-. |+++++|
T Consensus 291 lTKlDgtA-KGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 291 LTKLDGTA-KGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EEecccCC-Ccce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 89999532 2222 22356777888777643 5555655
No 475
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.98 E-value=0.00073 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
+..++++|+|.+|||||+|+..|+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999988764
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.98 E-value=0.00069 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 477
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.0022 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...+..|+++|..||||||..-+|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHH
Confidence 34557899999999999999887754
No 478
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.97 E-value=0.0013 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456889999999999999999754
No 479
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.97 E-value=0.00069 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.-|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 480
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.95 E-value=0.00074 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 481
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.95 E-value=0.0091 Score=46.70 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027918 17 KLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~ 36 (217)
-|+|.|.+||||||+++.|.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999995
No 482
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.95 E-value=0.00072 Score=51.59 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999987
No 483
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.95 E-value=0.00085 Score=48.57 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.++|+|+.|+|||||++.++.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 799999999999999998863
No 484
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00031 Score=52.94 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=52.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhccc----CCc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYR----GAM 89 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~----~~d 89 (217)
...|++.|..+ +|++|++.+.+.-.. ..++...+|.+..-.-.+ ..--.++|+.+|......+..--+. ..-
T Consensus 45 E~~I~~~Gn~~--~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~ 121 (363)
T KOG3929|consen 45 EFFIGSKGNGG--KTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF 121 (363)
T ss_pred eeEEEEecCCc--eeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence 36788888665 599999999865433 355566666554433222 3345789999997655443322221 123
Q ss_pred EEEEEEeCCChh
Q 027918 90 GILLVYDVTDES 101 (217)
Q Consensus 90 ~~i~v~d~~~~~ 101 (217)
.+|++.|+++++
T Consensus 122 slIL~LDls~p~ 133 (363)
T KOG3929|consen 122 SLILVLDLSKPN 133 (363)
T ss_pred hheeeeecCChH
Confidence 488999999864
No 485
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0093 Score=48.82 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=25.2
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
....+..-+|+|||+.|+|||||+..|++.
T Consensus 607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccccccceeEEECCCCccHHHHHHHHhcC
Confidence 344556679999999999999999999874
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.00083 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|+|++|||||||++.|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999874
No 487
>PRK00625 shikimate kinase; Provisional
Probab=96.93 E-value=0.0008 Score=48.54 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
+|+++|.+||||||+.+.|...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.93 E-value=0.0043 Score=49.54 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..+|+|.|++|||||||++.|+..-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998643
No 489
>PRK14531 adenylate kinase; Provisional
Probab=96.93 E-value=0.00088 Score=48.82 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+|+++|+|||||||+...|...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998653
No 490
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.92 E-value=0.001 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.++|+|+|+|||||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999865
No 491
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.92 E-value=0.00076 Score=49.75 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|.|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 492
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.00076 Score=53.53 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999884
No 493
>PRK02496 adk adenylate kinase; Provisional
Probab=96.91 E-value=0.00097 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+|+|+|+|||||||+.+.|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
No 494
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.90 E-value=0.006 Score=47.19 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-|+|.|++|+||||+++.++...
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999987653
No 495
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00085 Score=51.01 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-+.|+|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999998
No 496
>PRK04195 replication factor C large subunit; Provisional
Probab=96.90 E-value=0.0046 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-.++|.|++|+||||+++.+.+..
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998753
No 497
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00086 Score=50.08 Aligned_cols=21 Identities=43% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|+|++|||||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 699999999999999999987
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.90 E-value=0.00093 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|+|||||++.+.+-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 499
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.90 E-value=0.01 Score=44.55 Aligned_cols=102 Identities=8% Similarity=0.135 Sum_probs=61.7
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 141 (217)
+.+.|+|+.|... ......+..+|.+|+=.-.+..+.-+ ..-.|+..+......++|.-|+.|++.-. ......
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~--~~~~~~ 159 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA--RLTRAQ 159 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc--hhhHHH
Confidence 5789999988643 23444566899888866665433322 22234455545455578999999998631 111122
Q ss_pred HHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 142 SKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
..+.++.. ++|++.+...+-.-+.+++.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 23334433 48888888877666666654
No 500
>PRK08233 hypothetical protein; Provisional
Probab=96.88 E-value=0.00091 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
+-|+|.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999864
Done!