Query 027918
Match_columns 217
No_of_seqs 148 out of 1917
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 8.2E-44 2.8E-48 265.1 19.2 169 13-182 11-179 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8E-38 2.7E-42 231.7 23.1 171 12-183 5-175 (206)
3 2bov_A RAla, RAS-related prote 100.0 5.7E-36 2E-40 221.4 22.4 171 11-183 10-181 (206)
4 1vg8_A RAS-related protein RAB 100.0 1.1E-36 3.8E-41 225.5 18.5 169 12-182 5-178 (207)
5 3cpj_B GTP-binding protein YPT 100.0 2.2E-36 7.6E-41 226.7 19.4 174 10-184 8-181 (223)
6 2gf9_A RAS-related protein RAB 100.0 7.3E-35 2.5E-39 213.0 23.9 177 4-181 11-187 (189)
7 2hup_A RAS-related protein RAB 100.0 2.4E-35 8.1E-40 217.7 21.0 176 5-181 19-195 (201)
8 2a5j_A RAS-related protein RAB 100.0 7.6E-35 2.6E-39 213.3 23.3 178 5-183 11-188 (191)
9 2ew1_A RAS-related protein RAB 100.0 5.4E-35 1.8E-39 215.8 22.4 174 9-183 20-193 (201)
10 2fu5_C RAS-related protein RAB 100.0 3.6E-35 1.2E-39 213.3 20.3 171 12-183 5-175 (183)
11 3tkl_A RAS-related protein RAB 100.0 2.2E-34 7.4E-39 211.4 23.9 173 10-183 11-183 (196)
12 2bme_A RAB4A, RAS-related prot 100.0 2.4E-34 8.1E-39 209.5 22.8 174 11-185 6-179 (186)
13 2oil_A CATX-8, RAS-related pro 100.0 2.6E-34 8.8E-39 210.7 22.6 175 7-182 17-191 (193)
14 1zbd_A Rabphilin-3A; G protein 100.0 5.3E-34 1.8E-38 210.6 23.9 174 10-184 3-176 (203)
15 3tw8_B RAS-related protein RAB 100.0 3.7E-34 1.3E-38 207.3 22.3 172 11-184 5-176 (181)
16 2o52_A RAS-related protein RAB 100.0 2.4E-34 8.3E-39 212.2 20.5 175 9-184 19-193 (200)
17 1g16_A RAS-related protein SEC 100.0 2.8E-34 9.7E-39 205.9 20.1 166 14-181 2-167 (170)
18 3dz8_A RAS-related protein RAB 100.0 2.3E-35 8E-40 216.0 14.7 174 8-182 16-189 (191)
19 1z08_A RAS-related protein RAB 100.0 2.8E-34 9.7E-39 206.0 19.6 166 12-178 3-168 (170)
20 2efe_B Small GTP-binding prote 100.0 6.3E-34 2.1E-38 206.3 21.4 169 12-181 9-177 (181)
21 1z0f_A RAB14, member RAS oncog 100.0 7.6E-34 2.6E-38 205.3 21.5 168 10-178 10-177 (179)
22 2il1_A RAB12; G-protein, GDP, 100.0 2.6E-34 9E-39 210.6 19.1 170 9-179 20-190 (192)
23 2g6b_A RAS-related protein RAB 100.0 2.1E-33 7.1E-38 203.4 22.6 169 11-180 6-175 (180)
24 4dsu_A GTPase KRAS, isoform 2B 100.0 2.1E-33 7.1E-38 204.8 22.1 169 13-184 2-171 (189)
25 2gf0_A GTP-binding protein DI- 100.0 8E-34 2.7E-38 208.8 19.7 164 13-179 6-171 (199)
26 3cph_A RAS-related protein SEC 100.0 3.1E-33 1.1E-37 207.8 23.0 173 9-183 14-186 (213)
27 2f7s_A C25KG, RAS-related prot 100.0 3.9E-34 1.3E-38 213.5 18.2 176 7-183 17-203 (217)
28 2fg5_A RAB-22B, RAS-related pr 100.0 5.8E-34 2E-38 208.8 18.7 171 8-179 16-186 (192)
29 1ek0_A Protein (GTP-binding pr 100.0 1.5E-33 5.2E-38 202.0 20.5 163 15-177 3-167 (170)
30 1z0j_A RAB-22, RAS-related pro 100.0 2.6E-33 9E-38 200.9 21.7 165 12-177 3-167 (170)
31 1r2q_A RAS-related protein RAB 100.0 1.5E-33 5.2E-38 202.0 20.3 164 13-177 4-167 (170)
32 3bc1_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 204.3 22.2 172 11-183 7-189 (195)
33 2p5s_A RAS and EF-hand domain 100.0 4.7E-34 1.6E-38 210.4 17.5 171 8-178 21-196 (199)
34 1z2a_A RAS-related protein RAB 100.0 1.5E-33 5E-38 201.8 19.5 164 13-178 3-166 (168)
35 3t5g_A GTP-binding protein RHE 100.0 2.8E-33 9.7E-38 203.0 20.8 168 13-182 4-172 (181)
36 1z06_A RAS-related protein RAB 100.0 1.6E-33 5.3E-38 205.9 19.5 170 8-178 13-187 (189)
37 3kkq_A RAS-related protein M-R 100.0 7E-33 2.4E-37 201.2 22.7 167 11-179 14-182 (183)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.9E-33 2E-37 200.5 22.0 166 12-179 4-174 (177)
39 3cbq_A GTP-binding protein REM 100.0 1.5E-33 5E-38 207.2 19.0 171 8-179 16-188 (195)
40 2fn4_A P23, RAS-related protei 100.0 5.7E-33 1.9E-37 201.1 21.8 168 13-182 7-175 (181)
41 1ky3_A GTP-binding protein YPT 100.0 2.3E-33 7.8E-38 203.3 19.3 170 12-181 5-180 (182)
42 3q3j_B RHO-related GTP-binding 100.0 2.1E-33 7E-38 209.3 19.1 171 10-182 22-206 (214)
43 2hxs_A RAB-26, RAS-related pro 100.0 1.3E-33 4.5E-38 204.0 17.6 166 13-179 4-173 (178)
44 3q85_A GTP-binding protein REM 100.0 3.9E-33 1.3E-37 200.0 19.8 165 15-180 2-168 (169)
45 3clv_A RAB5 protein, putative; 100.0 1.6E-32 5.4E-37 202.5 23.4 168 11-182 3-207 (208)
46 3ihw_A Centg3; RAS, centaurin, 100.0 8.6E-33 2.9E-37 201.3 21.6 166 9-181 14-182 (184)
47 2y8e_A RAB-protein 6, GH09086P 100.0 3.1E-33 1.1E-37 202.1 19.2 165 13-178 12-176 (179)
48 2nzj_A GTP-binding protein REM 100.0 1.1E-32 3.9E-37 198.5 21.9 168 13-182 2-172 (175)
49 2j0v_A RAC-like GTP-binding pr 100.0 1.7E-33 5.8E-38 209.3 18.0 168 12-181 6-182 (212)
50 3reg_A RHO-like small GTPase; 100.0 9E-33 3.1E-37 202.6 21.5 171 9-181 17-190 (194)
51 3oes_A GTPase rhebl1; small GT 100.0 2E-33 6.8E-38 207.3 17.7 173 9-183 18-191 (201)
52 3c5c_A RAS-like protein 12; GD 100.0 3.8E-33 1.3E-37 203.6 19.0 167 9-178 15-185 (187)
53 1x3s_A RAS-related protein RAB 100.0 1.2E-32 4.3E-37 201.7 21.4 169 11-181 11-180 (195)
54 2q3h_A RAS homolog gene family 100.0 1.5E-32 5.1E-37 202.5 21.7 172 9-182 14-198 (201)
55 2atx_A Small GTP binding prote 100.0 2.1E-32 7.1E-37 200.7 21.1 167 10-178 13-192 (194)
56 2yc2_C IFT27, small RAB-relate 100.0 1.3E-33 4.6E-38 208.9 14.7 170 13-182 18-195 (208)
57 2g3y_A GTP-binding protein GEM 100.0 2.6E-32 9E-37 202.5 20.8 172 9-181 31-205 (211)
58 2a9k_A RAS-related protein RAL 100.0 4.2E-32 1.5E-36 197.4 21.4 169 12-182 15-184 (187)
59 1u8z_A RAS-related protein RAL 100.0 3.3E-32 1.1E-36 194.6 20.1 163 14-178 3-166 (168)
60 2iwr_A Centaurin gamma 1; ANK 100.0 4.6E-32 1.6E-36 196.1 21.0 164 13-183 5-173 (178)
61 3q72_A GTP-binding protein RAD 100.0 4.1E-32 1.4E-36 194.1 19.6 163 15-180 2-165 (166)
62 1c1y_A RAS-related protein RAP 100.0 5.5E-32 1.9E-36 193.4 19.9 161 15-177 3-165 (167)
63 1kao_A RAP2A; GTP-binding prot 100.0 4.9E-32 1.7E-36 193.5 19.5 163 15-179 3-166 (167)
64 2atv_A RERG, RAS-like estrogen 100.0 7.2E-32 2.5E-36 198.2 20.9 168 11-181 24-193 (196)
65 3con_A GTPase NRAS; structural 100.0 1.9E-31 6.4E-36 194.9 22.9 171 9-182 15-186 (190)
66 1m7b_A RND3/RHOE small GTP-bin 100.0 2.7E-32 9.3E-37 198.5 18.3 165 12-178 4-182 (184)
67 1gwn_A RHO-related GTP-binding 100.0 4.8E-32 1.6E-36 200.6 18.8 166 12-179 25-204 (205)
68 2gco_A H9, RHO-related GTP-bin 100.0 2.6E-31 8.9E-36 196.0 22.0 165 12-178 22-199 (201)
69 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.3E-31 4.5E-36 194.8 19.5 163 14-178 4-179 (186)
70 4djt_A GTP-binding nuclear pro 100.0 4.6E-32 1.6E-36 202.3 17.5 171 12-183 8-179 (218)
71 3l0i_B RAS-related protein RAB 100.0 1.8E-34 6.2E-39 212.6 4.0 168 10-178 28-195 (199)
72 2j1l_A RHO-related GTP-binding 100.0 1.5E-31 5.2E-36 199.2 19.2 167 13-181 32-211 (214)
73 4bas_A ADP-ribosylation factor 100.0 1.5E-31 5E-36 196.7 18.4 173 6-182 8-192 (199)
74 2ce2_X GTPase HRAS; signaling 100.0 7.9E-31 2.7E-35 186.9 21.6 161 15-178 3-164 (166)
75 2erx_A GTP-binding protein DI- 100.0 2.3E-31 8E-36 190.9 18.4 162 14-177 2-165 (172)
76 3t1o_A Gliding protein MGLA; G 100.0 5.4E-32 1.8E-36 198.6 15.0 168 11-183 10-196 (198)
77 2fv8_A H6, RHO-related GTP-bin 100.0 5.7E-31 2E-35 195.0 20.0 165 13-179 23-200 (207)
78 3gj0_A GTP-binding nuclear pro 100.0 5.7E-32 2E-36 202.3 13.7 170 8-181 8-177 (221)
79 3bwd_D RAC-like GTP-binding pr 100.0 5.5E-32 1.9E-36 196.2 13.1 164 13-178 6-180 (182)
80 2cjw_A GTP-binding protein GEM 100.0 2.5E-30 8.7E-35 189.4 21.3 167 13-181 4-174 (192)
81 2f9l_A RAB11B, member RAS onco 100.0 8.2E-30 2.8E-34 187.7 23.0 169 13-182 3-171 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 9.1E-31 3.1E-35 193.6 17.5 163 13-177 28-203 (204)
83 1zd9_A ADP-ribosylation factor 100.0 1.4E-31 4.7E-36 195.5 12.4 169 4-179 11-185 (188)
84 2h57_A ADP-ribosylation factor 100.0 1.9E-30 6.6E-35 189.6 17.5 164 9-179 15-187 (190)
85 1upt_A ARL1, ADP-ribosylation 100.0 3.6E-30 1.2E-34 184.7 15.2 159 13-179 5-169 (171)
86 1oix_A RAS-related protein RAB 100.0 6.6E-29 2.3E-33 181.7 21.4 168 9-177 23-190 (191)
87 1ksh_A ARF-like protein 2; sma 100.0 2.1E-29 7.1E-34 183.4 18.5 159 13-179 16-180 (186)
88 1r8s_A ADP-ribosylation factor 100.0 8.4E-31 2.9E-35 186.9 10.8 156 16-179 1-162 (164)
89 2h17_A ADP-ribosylation factor 100.0 3.8E-30 1.3E-34 186.7 14.3 161 8-176 14-180 (181)
90 1f6b_A SAR1; gtpases, N-termin 100.0 7E-30 2.4E-34 188.0 15.5 155 14-176 24-196 (198)
91 1zj6_A ADP-ribosylation factor 100.0 2.4E-30 8.2E-35 188.6 12.6 160 13-180 14-179 (187)
92 1m2o_B GTP-binding protein SAR 100.0 1.9E-29 6.4E-34 184.5 16.8 155 14-176 22-189 (190)
93 1fzq_A ADP-ribosylation factor 100.0 4.2E-30 1.4E-34 186.6 12.5 159 13-179 14-178 (181)
94 2b6h_A ADP-ribosylation factor 100.0 2.7E-30 9.1E-35 189.3 10.9 159 12-178 26-190 (192)
95 3llu_A RAS-related GTP-binding 100.0 5.8E-30 2E-34 188.1 11.8 167 8-177 13-195 (196)
96 2wkq_A NPH1-1, RAS-related C3 100.0 1.9E-28 6.4E-33 193.6 20.9 164 13-178 153-329 (332)
97 1moz_A ARL1, ADP-ribosylation 100.0 2.6E-29 8.8E-34 182.3 13.8 160 13-180 16-181 (183)
98 2zej_A Dardarin, leucine-rich 100.0 5.1E-30 1.7E-34 186.5 9.7 163 15-179 2-178 (184)
99 2x77_A ADP-ribosylation factor 100.0 9.7E-30 3.3E-34 185.7 11.2 160 13-180 20-185 (189)
100 3th5_A RAS-related C3 botulinu 99.9 2.1E-31 7.2E-36 196.9 0.0 163 13-177 28-203 (204)
101 2lkc_A Translation initiation 100.0 3.9E-28 1.3E-32 175.3 14.5 159 13-181 6-173 (178)
102 2wji_A Ferrous iron transport 100.0 4E-28 1.4E-32 173.5 13.8 153 15-177 3-163 (165)
103 2qu8_A Putative nucleolar GTP- 100.0 2.5E-27 8.6E-32 178.0 17.8 166 13-182 27-208 (228)
104 2fh5_B SR-beta, signal recogni 100.0 2.8E-28 9.6E-33 181.3 11.8 161 13-176 5-213 (214)
105 3c5h_A Glucocorticoid receptor 100.0 5.1E-29 1.7E-33 190.2 7.9 166 9-177 13-253 (255)
106 3o47_A ADP-ribosylation factor 100.0 2.1E-28 7.1E-33 193.1 10.5 159 13-179 163-327 (329)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 4.4E-27 1.5E-31 183.9 14.6 160 14-177 2-179 (307)
108 2cxx_A Probable GTP-binding pr 99.9 2E-27 6.9E-32 173.2 11.2 157 16-182 2-187 (190)
109 2gj8_A MNME, tRNA modification 99.9 4E-27 1.4E-31 169.5 11.9 153 15-178 4-165 (172)
110 2wjg_A FEOB, ferrous iron tran 99.9 7.1E-27 2.4E-31 170.2 12.4 157 14-180 6-170 (188)
111 2dyk_A GTP-binding protein; GT 99.9 1.1E-26 3.6E-31 164.9 12.8 150 16-177 2-160 (161)
112 3lvq_E ARF-GAP with SH3 domain 99.9 3.5E-26 1.2E-30 190.0 17.5 162 13-182 320-487 (497)
113 1svi_A GTP-binding protein YSX 99.9 4.9E-27 1.7E-31 172.0 10.9 161 9-177 17-193 (195)
114 3a1s_A Iron(II) transport prot 99.9 3E-26 1E-30 174.9 15.0 156 13-178 3-166 (258)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 8.4E-28 2.9E-32 186.8 5.1 157 17-180 1-175 (331)
116 3pqc_A Probable GTP-binding pr 99.9 4E-26 1.4E-30 166.9 11.9 160 9-178 17-193 (195)
117 3iby_A Ferrous iron transport 99.9 2.4E-26 8.2E-31 175.2 9.8 151 16-176 2-164 (256)
118 3iev_A GTP-binding protein ERA 99.9 5.1E-25 1.8E-29 172.2 17.5 160 13-178 8-181 (308)
119 3dpu_A RAB family protein; roc 99.9 1.9E-26 6.4E-31 193.0 9.3 164 12-180 38-209 (535)
120 3b1v_A Ferrous iron uptake tra 99.9 5.8E-26 2E-30 174.3 10.6 153 14-177 2-162 (272)
121 3k53_A Ferrous iron transport 99.9 4.1E-25 1.4E-29 170.0 13.4 156 15-179 3-166 (271)
122 3i8s_A Ferrous iron transport 99.9 8.2E-26 2.8E-30 174.0 9.2 153 15-177 3-167 (274)
123 4dhe_A Probable GTP-binding pr 99.9 2.9E-25 9.9E-30 165.9 7.9 165 10-180 24-212 (223)
124 3gee_A MNME, tRNA modification 99.9 4.6E-24 1.6E-28 175.1 15.2 156 15-178 233-397 (476)
125 2hjg_A GTP-binding protein ENG 99.9 1.9E-24 6.4E-29 176.7 12.6 161 13-180 173-350 (436)
126 2e87_A Hypothetical protein PH 99.9 2.1E-23 7E-28 166.4 17.4 162 13-180 165-337 (357)
127 1nrj_B SR-beta, signal recogni 99.9 3.9E-25 1.3E-29 164.7 6.0 144 12-165 9-170 (218)
128 4dcu_A GTP-binding protein ENG 99.9 1.3E-23 4.5E-28 172.6 13.4 164 12-182 192-372 (456)
129 1wf3_A GTP-binding protein; GT 99.9 2E-23 6.8E-28 162.5 13.4 153 15-177 7-171 (301)
130 1lnz_A SPO0B-associated GTP-bi 99.9 6.8E-24 2.3E-28 167.4 9.1 157 16-178 159-329 (342)
131 1xzp_A Probable tRNA modificat 99.9 2.1E-23 7.1E-28 171.4 11.9 153 16-180 244-406 (482)
132 3qq5_A Small GTP-binding prote 99.9 1.9E-24 6.4E-29 174.8 5.4 159 11-179 30-196 (423)
133 1mky_A Probable GTP-binding pr 99.9 5.9E-23 2E-27 168.0 14.0 152 16-180 2-167 (439)
134 2qtf_A Protein HFLX, GTP-bindi 99.9 3E-22 1E-26 159.4 16.6 162 16-180 180-355 (364)
135 1cip_A Protein (guanine nucleo 99.9 9.1E-23 3.1E-27 161.5 12.9 127 52-180 183-345 (353)
136 3j2k_7 ERF3, eukaryotic polype 99.9 1.4E-22 4.7E-27 165.5 13.9 160 10-171 12-217 (439)
137 1wb1_A Translation elongation 99.9 2E-22 6.7E-27 166.2 14.0 156 14-178 18-188 (482)
138 3sjy_A Translation initiation 99.9 5.6E-22 1.9E-26 160.5 16.3 164 12-178 5-191 (403)
139 3cb4_D GTP-binding protein LEP 99.9 2.9E-22 1E-26 168.2 14.7 159 13-178 2-181 (599)
140 3lxx_A GTPase IMAP family memb 99.9 6.7E-22 2.3E-26 149.4 14.7 165 10-179 24-214 (239)
141 2ywe_A GTP-binding protein LEP 99.9 6.4E-22 2.2E-26 165.9 14.9 159 13-178 4-183 (600)
142 1s0u_A EIF-2-gamma, translatio 99.9 1.3E-21 4.4E-26 158.6 16.2 160 13-178 6-197 (408)
143 3geh_A MNME, tRNA modification 99.9 8.2E-23 2.8E-27 167.1 9.1 153 14-179 223-384 (462)
144 2xtp_A GTPase IMAP family memb 99.9 4.3E-22 1.5E-26 152.2 12.3 163 12-180 19-209 (260)
145 3lxw_A GTPase IMAP family memb 99.9 1.8E-21 6.3E-26 147.6 15.0 165 12-180 18-209 (247)
146 1zcb_A G alpha I/13; GTP-bindi 99.9 5.8E-22 2E-26 157.4 12.8 127 53-181 192-355 (362)
147 1kk1_A EIF2gamma; initiation o 99.9 8.3E-22 2.8E-26 159.9 13.9 164 9-178 4-199 (410)
148 3izy_P Translation initiation 99.9 3E-24 1E-28 177.8 -0.5 160 14-178 3-167 (537)
149 3ohm_A Guanine nucleotide-bind 99.9 7.4E-22 2.5E-26 154.2 13.0 127 52-180 157-319 (327)
150 1mky_A Probable GTP-binding pr 99.9 2.5E-21 8.6E-26 158.3 16.2 161 13-180 178-356 (439)
151 2hjg_A GTP-binding protein ENG 99.9 9.9E-23 3.4E-27 166.5 7.4 151 16-178 4-164 (436)
152 2xtz_A Guanine nucleotide-bind 99.9 5.3E-22 1.8E-26 157.1 11.1 120 62-181 181-347 (354)
153 1ega_A Protein (GTP-binding pr 99.9 2E-21 6.9E-26 151.4 13.2 156 15-178 8-174 (301)
154 3t5d_A Septin-7; GTP-binding p 99.9 2.1E-22 7.2E-27 155.1 6.8 160 14-177 7-202 (274)
155 1zun_B Sulfate adenylate trans 99.9 2.4E-21 8.1E-26 158.2 12.8 155 11-170 20-215 (434)
156 3p26_A Elongation factor 1 alp 99.9 5.5E-21 1.9E-25 157.9 14.5 151 13-168 31-227 (483)
157 3tr5_A RF-3, peptide chain rel 99.9 2.6E-21 8.7E-26 160.8 11.9 116 13-134 11-148 (528)
158 2ged_A SR-beta, signal recogni 99.9 1.2E-21 4E-26 143.1 8.3 114 12-134 45-170 (193)
159 1jny_A EF-1-alpha, elongation 99.9 2.5E-22 8.5E-27 164.0 4.9 156 13-171 4-205 (435)
160 1d2e_A Elongation factor TU (E 99.9 3.9E-21 1.3E-25 155.2 11.5 158 14-177 2-193 (397)
161 2c78_A Elongation factor TU-A; 99.9 2.3E-21 7.9E-26 157.0 10.1 147 13-165 9-180 (405)
162 2qag_A Septin-2, protein NEDD5 99.8 6.4E-22 2.2E-26 157.7 6.1 164 13-182 35-236 (361)
163 1zo1_I IF2, translation initia 99.8 5.4E-23 1.8E-27 169.0 -0.3 156 14-175 3-163 (501)
164 2elf_A Protein translation elo 99.8 4.3E-21 1.5E-25 153.2 10.5 147 17-180 23-181 (370)
165 4fid_A G protein alpha subunit 99.8 3.8E-20 1.3E-24 145.1 14.9 126 52-179 151-328 (340)
166 1r5b_A Eukaryotic peptide chai 99.8 5.2E-22 1.8E-26 163.3 4.5 156 13-170 41-243 (467)
167 1azs_C GS-alpha; complex (lyas 99.8 2.4E-20 8.1E-25 149.3 13.8 124 55-180 210-386 (402)
168 1g7s_A Translation initiation 99.8 2.4E-20 8.2E-25 156.7 14.0 159 15-180 5-219 (594)
169 3izq_1 HBS1P, elongation facto 99.8 6.7E-21 2.3E-25 160.9 8.5 155 13-169 165-362 (611)
170 4dcu_A GTP-binding protein ENG 99.8 2.3E-21 7.9E-26 159.2 5.4 152 15-178 23-184 (456)
171 1f60_A Elongation factor EEF1A 99.8 7.4E-22 2.5E-26 162.0 2.2 152 13-169 5-202 (458)
172 3mca_A HBS1, elongation factor 99.8 9E-22 3.1E-26 165.7 2.3 152 11-167 173-371 (592)
173 2aka_B Dynamin-1; fusion prote 99.8 1.7E-20 5.9E-25 146.0 7.3 162 12-178 23-252 (299)
174 3def_A T7I23.11 protein; chlor 99.8 5.3E-19 1.8E-23 135.2 14.2 120 13-134 34-165 (262)
175 3avx_A Elongation factor TS, e 99.8 1.3E-19 4.6E-24 159.2 12.1 162 12-177 293-484 (1289)
176 1pui_A ENGB, probable GTP-bind 99.8 1.6E-19 5.5E-24 133.5 9.0 160 10-178 21-198 (210)
177 1dar_A EF-G, elongation factor 99.8 1.7E-18 5.9E-23 148.3 14.4 118 11-134 8-143 (691)
178 1udx_A The GTP-binding protein 99.8 1.5E-18 5E-23 140.0 12.6 160 17-181 159-327 (416)
179 2dy1_A Elongation factor G; tr 99.8 5.3E-18 1.8E-22 144.8 16.4 116 12-133 6-139 (665)
180 2j69_A Bacterial dynamin-like 99.8 1.6E-18 5.5E-23 148.5 12.5 163 14-179 68-325 (695)
181 3t34_A Dynamin-related protein 99.8 2.8E-19 9.7E-24 142.7 7.0 156 14-173 33-255 (360)
182 2h5e_A Peptide chain release f 99.8 8.3E-18 2.8E-22 139.9 15.8 116 13-134 11-148 (529)
183 2xex_A Elongation factor G; GT 99.8 4.3E-18 1.5E-22 145.9 14.3 117 12-134 7-141 (693)
184 1h65_A Chloroplast outer envel 99.8 5.8E-18 2E-22 130.0 13.3 119 13-134 37-168 (270)
185 2rdo_7 EF-G, elongation factor 99.8 1.1E-17 3.9E-22 143.4 16.0 119 12-134 7-148 (704)
186 2qnr_A Septin-2, protein NEDD5 99.8 2.2E-19 7.4E-24 139.8 4.4 164 13-181 16-216 (301)
187 1jwy_B Dynamin A GTPase domain 99.8 6.9E-18 2.4E-22 132.3 11.5 163 12-179 21-262 (315)
188 1wxq_A GTP-binding protein; st 99.7 1.9E-18 6.6E-23 139.0 7.2 85 16-100 1-114 (397)
189 2qag_C Septin-7; cell cycle, c 99.7 6.6E-18 2.2E-22 136.3 8.2 161 13-178 29-226 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 2E-18 6.7E-23 134.5 4.9 133 30-174 32-168 (301)
191 3vqt_A RF-3, peptide chain rel 99.7 2.2E-16 7.4E-21 131.9 12.8 117 13-135 29-167 (548)
192 1jal_A YCHF protein; nucleotid 99.7 1.1E-15 3.8E-20 120.8 14.5 145 16-161 3-239 (363)
193 2x2e_A Dynamin-1; nitration, h 99.7 2.2E-18 7.7E-23 137.1 -0.9 157 14-175 30-254 (353)
194 2wsm_A Hydrogenase expression/ 99.7 6.1E-17 2.1E-21 120.5 6.9 155 14-180 29-215 (221)
195 1n0u_A EF-2, elongation factor 99.7 2.8E-16 9.6E-21 137.2 10.0 118 13-134 17-164 (842)
196 3p32_A Probable GTPase RV1496/ 99.6 2.9E-16 1E-20 124.9 7.3 103 64-179 172-284 (355)
197 2hf9_A Probable hydrogenase ni 99.6 8.1E-18 2.8E-22 125.7 -3.5 154 14-179 37-224 (226)
198 2qpt_A EH domain-containing pr 99.6 1.3E-15 4.6E-20 127.2 9.1 119 12-134 62-232 (550)
199 2dby_A GTP-binding protein; GD 99.6 1.7E-15 5.7E-20 120.5 8.9 155 16-170 2-253 (368)
200 3j25_A Tetracycline resistance 99.6 4.7E-16 1.6E-20 132.2 3.7 113 16-134 3-133 (638)
201 4fn5_A EF-G 1, elongation fact 99.6 2.3E-14 7.9E-19 123.4 14.0 119 12-134 10-151 (709)
202 4a9a_A Ribosome-interacting GT 99.6 5.4E-14 1.9E-18 111.8 14.9 155 13-171 70-240 (376)
203 2www_A Methylmalonic aciduria 99.6 5.5E-14 1.9E-18 111.4 14.5 103 64-179 167-279 (349)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 6.7E-15 2.3E-19 126.0 5.8 159 13-176 49-275 (772)
205 2p67_A LAO/AO transport system 99.5 6.2E-15 2.1E-19 116.7 4.8 103 64-178 149-260 (341)
206 1yrb_A ATP(GTP)binding protein 99.5 1.5E-13 5E-18 104.8 11.7 112 64-179 109-257 (262)
207 2yv5_A YJEQ protein; hydrolase 99.4 2.9E-13 9.8E-18 105.3 9.0 97 74-174 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 4E-13 1.4E-17 106.0 8.9 103 64-178 148-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 7.1E-12 2.4E-16 100.3 12.6 87 13-99 18-127 (392)
210 3l82_B F-box only protein 4; T 99.4 9.3E-14 3.2E-18 100.5 1.5 103 72-178 110-222 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 6.3E-13 2.2E-17 106.1 6.0 88 13-100 20-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 3.6E-12 1.2E-16 96.6 5.3 105 71-178 194-307 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 1E-11 3.4E-16 99.2 -0.9 140 16-166 163-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.1 2.8E-10 9.7E-15 91.7 7.2 60 16-75 43-106 (427)
215 3h2y_A GTPase family protein; 99.0 4.6E-10 1.6E-14 89.5 7.2 96 73-176 55-157 (368)
216 2j37_W Signal recognition part 99.0 3.8E-10 1.3E-14 93.0 5.4 150 13-176 99-310 (504)
217 3h2y_A GTPase family protein; 99.0 1.1E-11 3.7E-16 98.9 -4.5 133 16-159 161-310 (368)
218 3sop_A Neuronal-specific septi 99.0 7.9E-10 2.7E-14 84.5 5.8 137 15-157 2-178 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 1.5E-09 5E-14 86.7 5.4 97 73-177 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.9 4.5E-09 1.5E-13 80.8 7.0 102 68-180 3-107 (282)
221 1tq4_A IIGP1, interferon-induc 98.8 5.7E-08 2E-12 78.3 12.0 159 16-181 70-255 (413)
222 1puj_A YLQF, conserved hypothe 98.6 3.6E-08 1.2E-12 75.7 5.5 58 13-75 118-176 (282)
223 3dm5_A SRP54, signal recogniti 98.6 2.8E-07 9.7E-12 74.7 9.6 91 64-167 183-279 (443)
224 3cnl_A YLQF, putative uncharac 98.5 4.1E-08 1.4E-12 74.6 2.4 56 16-76 100-156 (262)
225 2v3c_C SRP54, signal recogniti 98.5 4.8E-07 1.7E-11 73.4 8.0 84 64-159 181-272 (432)
226 3cnl_A YLQF, putative uncharac 98.3 2.6E-07 8.9E-12 70.2 3.4 91 71-175 4-97 (262)
227 3kl4_A SRP54, signal recogniti 98.3 7.9E-07 2.7E-11 72.0 5.7 91 64-167 180-278 (433)
228 1f5n_A Interferon-induced guan 98.3 3.7E-07 1.3E-11 76.6 3.9 65 12-76 35-103 (592)
229 1t9h_A YLOQ, probable GTPase E 98.2 7.6E-07 2.6E-11 69.0 3.7 90 78-170 77-168 (307)
230 3szr_A Interferon-induced GTP- 98.2 5.8E-06 2E-10 70.1 8.2 24 16-39 46-69 (608)
231 2rcn_A Probable GTPase ENGC; Y 98.2 6.6E-06 2.3E-10 65.0 7.9 85 84-172 127-212 (358)
232 1j8m_F SRP54, signal recogniti 98.1 5.4E-06 1.9E-10 64.0 7.3 92 64-169 181-281 (297)
233 1bif_A 6-phosphofructo-2-kinas 98.0 3.6E-07 1.2E-11 75.2 -2.0 109 14-127 38-156 (469)
234 3e70_C DPA, signal recognition 97.9 2E-05 6.7E-10 61.7 6.4 92 65-169 213-310 (328)
235 3q5d_A Atlastin-1; G protein, 97.7 3.1E-05 1E-09 63.0 4.5 25 13-37 65-89 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 4.6E-05 1.6E-09 54.3 3.2 23 16-38 1-23 (178)
237 1kgd_A CASK, peripheral plasma 97.4 8.8E-05 3E-09 52.8 3.0 22 17-38 7-28 (180)
238 2xxa_A Signal recognition part 97.4 0.0019 6.4E-08 52.5 11.0 83 64-158 184-273 (433)
239 1lvg_A Guanylate kinase, GMP k 97.4 9.9E-05 3.4E-09 53.4 3.0 21 17-37 6-26 (198)
240 3a00_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 52.0 2.9 21 18-38 4-24 (186)
241 3tr0_A Guanylate kinase, GMP k 97.3 0.00015 5E-09 52.5 3.0 22 17-38 9-30 (205)
242 1zp6_A Hypothetical protein AT 97.3 0.00014 5E-09 51.9 2.9 23 16-38 10-32 (191)
243 1znw_A Guanylate kinase, GMP k 97.2 0.00017 5.9E-09 52.5 3.0 22 17-38 22-43 (207)
244 1ukz_A Uridylate kinase; trans 97.2 0.00032 1.1E-08 50.7 4.3 34 4-37 4-37 (203)
245 1s96_A Guanylate kinase, GMP k 97.2 0.00019 6.4E-09 52.9 3.0 22 17-38 18-39 (219)
246 1z6g_A Guanylate kinase; struc 97.2 0.00019 6.6E-09 52.7 3.0 22 17-38 25-46 (218)
247 3ney_A 55 kDa erythrocyte memb 97.2 0.00022 7.7E-09 51.5 3.0 23 16-38 20-42 (197)
248 4gp7_A Metallophosphoesterase; 97.1 0.00022 7.4E-09 50.3 2.8 20 17-36 11-30 (171)
249 1htw_A HI0065; nucleotide-bind 97.1 0.00026 8.8E-09 49.3 3.0 23 17-39 35-57 (158)
250 3tau_A Guanylate kinase, GMP k 97.1 0.00025 8.6E-09 51.7 3.0 22 17-38 10-31 (208)
251 3tif_A Uncharacterized ABC tra 97.1 0.00025 8.5E-09 52.8 2.9 22 17-38 33-54 (235)
252 1ex7_A Guanylate kinase; subst 97.1 0.0003 1E-08 50.3 3.1 21 18-38 4-24 (186)
253 3c8u_A Fructokinase; YP_612366 97.1 0.00031 1.1E-08 51.1 3.3 25 14-38 21-45 (208)
254 1kag_A SKI, shikimate kinase I 97.1 0.00031 1E-08 49.4 3.0 23 16-38 5-27 (173)
255 2bdt_A BH3686; alpha-beta prot 97.1 0.00031 1.1E-08 50.2 3.0 21 17-37 4-24 (189)
256 2qor_A Guanylate kinase; phosp 97.0 0.00033 1.1E-08 50.8 3.0 22 17-38 14-35 (204)
257 2onk_A Molybdate/tungstate ABC 97.0 0.00035 1.2E-08 52.1 3.2 22 17-38 26-47 (240)
258 2pcj_A ABC transporter, lipopr 97.0 0.0003 1E-08 52.0 2.7 22 17-38 32-53 (224)
259 2j41_A Guanylate kinase; GMP, 97.0 0.00033 1.1E-08 50.6 3.0 24 16-39 7-30 (207)
260 3asz_A Uridine kinase; cytidin 97.0 0.0004 1.4E-08 50.5 3.2 22 16-37 7-28 (211)
261 4eun_A Thermoresistant glucoki 97.0 0.00037 1.3E-08 50.4 3.0 22 16-37 30-51 (200)
262 3lw7_A Adenylate kinase relate 97.0 0.00041 1.4E-08 48.6 3.2 20 16-35 2-21 (179)
263 1ak2_A Adenylate kinase isoenz 97.0 0.00045 1.5E-08 51.2 3.5 30 8-37 9-38 (233)
264 1sgw_A Putative ABC transporte 97.0 0.00038 1.3E-08 51.0 3.0 22 17-38 37-58 (214)
265 2i3b_A HCR-ntpase, human cance 97.0 0.00037 1.3E-08 50.1 2.8 22 17-38 3-24 (189)
266 2bbw_A Adenylate kinase 4, AK4 97.0 0.00045 1.5E-08 51.6 3.4 21 16-36 28-48 (246)
267 1b0u_A Histidine permease; ABC 97.0 0.00038 1.3E-08 52.7 3.0 22 17-38 34-55 (262)
268 3gfo_A Cobalt import ATP-bindi 97.0 0.00038 1.3E-08 53.0 3.0 22 17-38 36-57 (275)
269 2rcn_A Probable GTPase ENGC; Y 97.0 0.00041 1.4E-08 54.8 3.2 24 17-40 217-240 (358)
270 3kb2_A SPBC2 prophage-derived 97.0 0.00041 1.4E-08 48.6 2.9 22 17-38 3-24 (173)
271 3fb4_A Adenylate kinase; psych 97.0 0.00045 1.5E-08 50.4 3.2 22 16-37 1-22 (216)
272 1ly1_A Polynucleotide kinase; 97.0 0.00045 1.6E-08 48.7 3.1 22 16-37 3-24 (181)
273 2cbz_A Multidrug resistance-as 97.0 0.00041 1.4E-08 51.7 2.9 22 17-38 33-54 (237)
274 3dl0_A Adenylate kinase; phosp 97.0 0.00048 1.6E-08 50.3 3.2 22 16-37 1-22 (216)
275 4g1u_C Hemin import ATP-bindin 97.0 0.00042 1.4E-08 52.6 3.0 22 17-38 39-60 (266)
276 1g6h_A High-affinity branched- 97.0 0.00041 1.4E-08 52.3 2.9 22 17-38 35-56 (257)
277 3sr0_A Adenylate kinase; phosp 96.9 0.00051 1.7E-08 50.0 3.2 22 16-37 1-22 (206)
278 2pze_A Cystic fibrosis transme 96.9 0.00046 1.6E-08 51.1 3.0 22 17-38 36-57 (229)
279 2olj_A Amino acid ABC transpor 96.9 0.00046 1.6E-08 52.3 3.0 22 17-38 52-73 (263)
280 2ff7_A Alpha-hemolysin translo 96.9 0.00045 1.5E-08 51.8 2.9 22 17-38 37-58 (247)
281 1mv5_A LMRA, multidrug resista 96.9 0.00052 1.8E-08 51.3 3.2 22 17-38 30-51 (243)
282 1ji0_A ABC transporter; ATP bi 96.9 0.00047 1.6E-08 51.5 2.9 22 17-38 34-55 (240)
283 1vpl_A ABC transporter, ATP-bi 96.9 0.00048 1.6E-08 51.9 3.0 22 17-38 43-64 (256)
284 2eyu_A Twitching motility prot 96.9 0.00049 1.7E-08 52.0 3.0 21 17-37 27-47 (261)
285 1knq_A Gluconate kinase; ALFA/ 96.9 0.00051 1.8E-08 48.3 3.0 22 16-37 9-30 (175)
286 2qi9_C Vitamin B12 import ATP- 96.9 0.00049 1.7E-08 51.6 3.0 22 17-38 28-49 (249)
287 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00053 1.8E-08 51.5 3.1 22 17-38 31-52 (250)
288 2zu0_C Probable ATP-dependent 96.9 0.00055 1.9E-08 51.9 3.2 22 17-38 48-69 (267)
289 3t61_A Gluconokinase; PSI-biol 96.9 0.00055 1.9E-08 49.5 3.0 23 16-38 19-41 (202)
290 2cdn_A Adenylate kinase; phosp 96.9 0.00078 2.7E-08 48.6 3.8 25 13-37 18-42 (201)
291 2if2_A Dephospho-COA kinase; a 96.9 0.00055 1.9E-08 49.5 2.9 22 16-37 2-23 (204)
292 3ec2_A DNA replication protein 96.9 0.00051 1.7E-08 48.7 2.7 23 16-38 39-61 (180)
293 2jaq_A Deoxyguanosine kinase; 96.9 0.00061 2.1E-08 49.1 3.2 21 17-37 2-22 (205)
294 3vaa_A Shikimate kinase, SK; s 96.9 0.00064 2.2E-08 49.1 3.3 22 16-37 26-47 (199)
295 2v9p_A Replication protein E1; 96.9 0.00058 2E-08 52.8 3.1 22 17-38 128-149 (305)
296 2ghi_A Transport protein; mult 96.9 0.00054 1.8E-08 51.8 2.9 22 17-38 48-69 (260)
297 2ihy_A ABC transporter, ATP-bi 96.9 0.00055 1.9E-08 52.3 3.0 22 17-38 49-70 (279)
298 3b85_A Phosphate starvation-in 96.9 0.00038 1.3E-08 50.8 2.0 22 17-38 24-45 (208)
299 1qhx_A CPT, protein (chloramph 96.9 0.00064 2.2E-08 47.9 3.1 22 17-38 5-26 (178)
300 1y63_A LMAJ004144AAA protein; 96.9 0.00075 2.6E-08 48.0 3.5 24 15-38 10-33 (184)
301 1np6_A Molybdopterin-guanine d 96.9 0.00063 2.1E-08 48.2 3.0 23 16-38 7-29 (174)
302 2ixe_A Antigen peptide transpo 96.9 0.00055 1.9E-08 52.1 2.9 22 17-38 47-68 (271)
303 1jjv_A Dephospho-COA kinase; P 96.9 0.00076 2.6E-08 48.8 3.6 22 16-37 3-24 (206)
304 3uie_A Adenylyl-sulfate kinase 96.8 0.00061 2.1E-08 49.2 3.0 23 16-38 26-48 (200)
305 2nq2_C Hypothetical ABC transp 96.8 0.00058 2E-08 51.4 2.9 22 17-38 33-54 (253)
306 1cke_A CK, MSSA, protein (cyti 96.8 0.00068 2.3E-08 49.8 3.2 22 16-37 6-27 (227)
307 2yz2_A Putative ABC transporte 96.8 0.00062 2.1E-08 51.6 2.9 22 17-38 35-56 (266)
308 3lnc_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 51.3 1.9 22 17-38 29-51 (231)
309 1nks_A Adenylate kinase; therm 96.8 0.00081 2.8E-08 47.9 3.4 21 17-37 3-23 (194)
310 2ehv_A Hypothetical protein PH 96.8 0.00071 2.4E-08 50.4 3.1 20 17-36 32-51 (251)
311 1e4v_A Adenylate kinase; trans 96.8 0.00069 2.4E-08 49.4 3.0 22 16-37 1-22 (214)
312 3co5_A Putative two-component 96.8 0.0019 6.5E-08 44.0 5.0 23 16-38 28-50 (143)
313 3cm0_A Adenylate kinase; ATP-b 96.8 0.00095 3.3E-08 47.4 3.6 22 16-37 5-26 (186)
314 3aez_A Pantothenate kinase; tr 96.8 0.0007 2.4E-08 52.5 3.0 25 13-37 88-112 (312)
315 2pjz_A Hypothetical protein ST 96.8 0.00082 2.8E-08 50.9 3.2 23 17-39 32-54 (263)
316 4a74_A DNA repair and recombin 96.8 0.00069 2.3E-08 49.8 2.7 22 17-38 27-48 (231)
317 1u0l_A Probable GTPase ENGC; p 96.8 0.00066 2.3E-08 52.4 2.7 23 17-39 171-193 (301)
318 1kht_A Adenylate kinase; phosp 96.8 0.0009 3.1E-08 47.6 3.3 22 16-37 4-25 (192)
319 1t9h_A YLOQ, probable GTPase E 96.7 0.00027 9.2E-09 54.7 0.4 23 17-39 175-197 (307)
320 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.8E-08 49.5 3.8 24 14-37 28-51 (243)
321 2rhm_A Putative kinase; P-loop 96.7 0.001 3.6E-08 47.4 3.5 22 16-37 6-27 (193)
322 2qt1_A Nicotinamide riboside k 96.7 0.0013 4.6E-08 47.6 4.1 26 13-38 19-44 (207)
323 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 47.2 3.3 22 16-37 6-27 (185)
324 2f1r_A Molybdopterin-guanine d 96.7 0.00045 1.5E-08 48.7 1.4 22 17-38 4-25 (171)
325 1lw7_A Transcriptional regulat 96.7 0.00082 2.8E-08 53.3 3.0 24 15-38 170-193 (365)
326 1aky_A Adenylate kinase; ATP:A 96.7 0.001 3.6E-08 48.7 3.4 22 16-37 5-26 (220)
327 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 46.2 3.3 22 16-37 1-22 (168)
328 2yv5_A YJEQ protein; hydrolase 96.7 0.0009 3.1E-08 51.7 3.1 20 17-36 167-186 (302)
329 2chg_A Replication factor C sm 96.7 0.0028 9.5E-08 45.8 5.6 22 17-38 40-61 (226)
330 3nh6_A ATP-binding cassette SU 96.7 0.00066 2.3E-08 52.5 2.2 22 17-38 82-103 (306)
331 2jeo_A Uridine-cytidine kinase 96.7 0.0012 4.1E-08 49.3 3.5 25 13-37 23-47 (245)
332 2vp4_A Deoxynucleoside kinase; 96.7 0.0011 3.8E-08 49.0 3.3 26 13-38 18-43 (230)
333 3fvq_A Fe(3+) IONS import ATP- 96.7 0.0009 3.1E-08 52.9 2.9 23 17-39 32-54 (359)
334 2x8a_A Nuclear valosin-contain 96.7 0.00098 3.3E-08 50.7 3.0 21 18-38 47-67 (274)
335 1via_A Shikimate kinase; struc 96.6 0.0011 3.7E-08 46.7 2.9 21 17-37 6-26 (175)
336 2plr_A DTMP kinase, probable t 96.6 0.0014 4.7E-08 47.5 3.6 22 16-37 5-26 (213)
337 2xb4_A Adenylate kinase; ATP-b 96.6 0.0012 4.1E-08 48.5 3.3 22 16-37 1-22 (223)
338 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.9E-08 46.7 3.6 22 16-37 4-25 (196)
339 1z47_A CYSA, putative ABC-tran 96.6 0.0011 3.7E-08 52.4 3.1 22 17-38 43-64 (355)
340 3tui_C Methionine import ATP-b 96.6 0.0011 3.8E-08 52.5 3.2 22 17-38 56-77 (366)
341 2bbs_A Cystic fibrosis transme 96.6 0.00093 3.2E-08 51.3 2.7 22 17-38 66-87 (290)
342 3jvv_A Twitching mobility prot 96.6 0.001 3.5E-08 52.6 3.0 21 17-37 125-145 (356)
343 1sxj_E Activator 1 40 kDa subu 96.6 0.0048 1.7E-07 48.4 6.8 21 17-37 38-58 (354)
344 2yyz_A Sugar ABC transporter, 96.6 0.0012 4E-08 52.3 3.1 22 17-38 31-52 (359)
345 1rj9_A FTSY, signal recognitio 96.6 0.0011 3.8E-08 51.2 3.0 84 65-159 186-281 (304)
346 3umf_A Adenylate kinase; rossm 96.6 0.002 6.9E-08 47.2 4.2 20 18-37 32-51 (217)
347 3rlf_A Maltose/maltodextrin im 96.6 0.0012 4.1E-08 52.6 3.2 23 17-39 31-53 (381)
348 2it1_A 362AA long hypothetical 96.6 0.0012 4.1E-08 52.3 3.2 22 17-38 31-52 (362)
349 1zd8_A GTP:AMP phosphotransfer 96.6 0.0012 4.3E-08 48.5 3.1 22 16-37 8-29 (227)
350 2yvu_A Probable adenylyl-sulfa 96.6 0.0021 7.1E-08 45.7 4.1 23 15-37 13-35 (186)
351 3b9q_A Chloroplast SRP recepto 96.6 0.0012 4.2E-08 50.9 3.0 23 15-37 100-122 (302)
352 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.7E-08 46.1 3.0 22 16-37 5-26 (169)
353 3iij_A Coilin-interacting nucl 96.6 0.0014 4.8E-08 46.3 3.1 22 16-37 12-33 (180)
354 1ixz_A ATP-dependent metallopr 96.6 0.0013 4.4E-08 49.3 3.0 21 18-38 52-72 (254)
355 1g29_1 MALK, maltose transport 96.6 0.0013 4.4E-08 52.3 3.1 23 17-39 31-53 (372)
356 1v43_A Sugar-binding transport 96.6 0.0013 4.6E-08 52.2 3.2 22 17-38 39-60 (372)
357 1qf9_A UMP/CMP kinase, protein 96.5 0.0021 7E-08 45.7 3.9 22 16-37 7-28 (194)
358 2kjq_A DNAA-related protein; s 96.5 0.00082 2.8E-08 46.2 1.7 22 17-38 38-59 (149)
359 1zak_A Adenylate kinase; ATP:A 96.5 0.0012 4.2E-08 48.4 2.7 22 16-37 6-27 (222)
360 2ze6_A Isopentenyl transferase 96.5 0.0014 4.8E-08 49.2 3.0 21 17-37 3-23 (253)
361 1jbk_A CLPB protein; beta barr 96.5 0.0016 5.6E-08 45.9 3.3 23 16-38 44-66 (195)
362 2v54_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 46.8 3.3 23 16-38 5-27 (204)
363 3be4_A Adenylate kinase; malar 96.5 0.0015 5.2E-08 47.7 3.1 22 16-37 6-27 (217)
364 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 46.4 3.1 21 17-37 2-22 (195)
365 1gvn_B Zeta; postsegregational 96.5 0.0018 6.3E-08 49.6 3.6 23 15-37 33-55 (287)
366 3d31_A Sulfate/molybdate ABC t 96.5 0.0011 3.7E-08 52.3 2.3 22 17-38 28-49 (348)
367 2gza_A Type IV secretion syste 96.5 0.0013 4.6E-08 52.1 2.8 22 17-38 177-198 (361)
368 2ewv_A Twitching motility prot 96.5 0.0015 5.3E-08 51.9 3.1 21 17-37 138-158 (372)
369 1sq5_A Pantothenate kinase; P- 96.5 0.0014 4.7E-08 50.8 2.8 23 15-37 80-102 (308)
370 2c95_A Adenylate kinase 1; tra 96.5 0.0017 6E-08 46.3 3.2 22 16-37 10-31 (196)
371 1odf_A YGR205W, hypothetical 3 96.5 0.0023 7.8E-08 49.1 3.9 25 13-37 29-53 (290)
372 1gtv_A TMK, thymidylate kinase 96.5 0.00063 2.2E-08 49.4 0.7 21 17-37 2-22 (214)
373 1rz3_A Hypothetical protein rb 96.5 0.0021 7.1E-08 46.4 3.5 24 14-37 21-44 (201)
374 2z0h_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 46.5 3.0 22 17-38 2-23 (197)
375 1uf9_A TT1252 protein; P-loop, 96.5 0.002 6.9E-08 46.3 3.4 24 15-38 8-31 (203)
376 3tqc_A Pantothenate kinase; bi 96.5 0.0023 8E-08 49.7 3.9 25 13-37 90-114 (321)
377 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0013 4.4E-08 51.5 2.5 22 17-38 173-194 (330)
378 4e22_A Cytidylate kinase; P-lo 96.4 0.0019 6.6E-08 48.4 3.4 21 16-36 28-48 (252)
379 1e6c_A Shikimate kinase; phosp 96.4 0.002 6.9E-08 45.0 3.1 21 17-37 4-24 (173)
380 2f6r_A COA synthase, bifunctio 96.4 0.004 1.4E-07 47.5 5.0 24 14-37 74-97 (281)
381 1p9r_A General secretion pathw 96.4 0.0017 5.8E-08 52.5 3.0 22 17-38 169-190 (418)
382 2bwj_A Adenylate kinase 5; pho 96.4 0.002 6.8E-08 46.1 3.1 22 16-37 13-34 (199)
383 1in4_A RUVB, holliday junction 96.4 0.0018 6E-08 50.7 3.0 22 17-38 53-74 (334)
384 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0024 8.1E-08 48.1 3.6 22 16-37 5-26 (260)
385 1vht_A Dephospho-COA kinase; s 96.4 0.0025 8.6E-08 46.5 3.6 23 15-37 4-26 (218)
386 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0019 6.4E-08 47.4 3.0 21 17-37 25-45 (235)
387 1nn5_A Similar to deoxythymidy 96.4 0.0021 7.2E-08 46.6 3.2 23 15-37 9-31 (215)
388 1iy2_A ATP-dependent metallopr 96.4 0.0019 6.4E-08 49.1 3.0 22 17-38 75-96 (278)
389 2pez_A Bifunctional 3'-phospho 96.4 0.002 7E-08 45.4 3.0 22 16-37 6-27 (179)
390 2p5t_B PEZT; postsegregational 96.4 0.0016 5.5E-08 48.9 2.5 25 13-37 30-54 (253)
391 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0077 2.6E-07 48.9 6.6 24 13-36 65-88 (457)
392 3gd7_A Fusion complex of cysti 96.4 0.0018 6.1E-08 51.8 2.9 22 17-38 49-70 (390)
393 2wwf_A Thymidilate kinase, put 96.4 0.002 7E-08 46.6 3.0 22 16-37 11-32 (212)
394 1oxx_K GLCV, glucose, ABC tran 96.4 0.0011 3.6E-08 52.4 1.5 23 17-39 33-55 (353)
395 1zuh_A Shikimate kinase; alpha 96.4 0.0026 8.8E-08 44.4 3.4 22 16-37 8-29 (168)
396 2iyv_A Shikimate kinase, SK; t 96.4 0.0022 7.6E-08 45.4 3.1 22 16-37 3-24 (184)
397 2og2_A Putative signal recogni 96.3 0.002 6.8E-08 51.0 3.0 23 15-37 157-179 (359)
398 2oap_1 GSPE-2, type II secreti 96.3 0.0019 6.5E-08 53.5 2.9 23 17-39 262-284 (511)
399 2grj_A Dephospho-COA kinase; T 96.3 0.0036 1.2E-07 44.9 3.9 26 13-38 10-35 (192)
400 2yhs_A FTSY, cell division pro 96.3 0.0022 7.6E-08 52.7 3.0 93 64-169 376-480 (503)
401 3uc9_A Increased recombination 96.3 0.003 1E-07 46.4 3.5 150 17-180 29-200 (233)
402 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 46.0 1.9 22 16-37 6-27 (183)
403 1lv7_A FTSH; alpha/beta domain 96.3 0.0024 8.2E-08 47.9 3.0 23 16-38 46-68 (257)
404 2p65_A Hypothetical protein PF 96.2 0.002 6.8E-08 45.4 2.3 23 16-38 44-66 (187)
405 1uj2_A Uridine-cytidine kinase 96.2 0.0033 1.1E-07 47.0 3.6 25 13-37 20-44 (252)
406 3nwj_A ATSK2; P loop, shikimat 96.2 0.0024 8.3E-08 47.9 2.8 22 16-37 49-70 (250)
407 1cr0_A DNA primase/helicase; R 96.2 0.0023 7.9E-08 49.1 2.7 22 17-38 37-58 (296)
408 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0022 7.6E-08 52.4 2.7 23 16-38 139-161 (460)
409 2obl_A ESCN; ATPase, hydrolase 96.2 0.0026 8.9E-08 50.1 3.0 23 17-39 73-95 (347)
410 1m7g_A Adenylylsulfate kinase; 96.2 0.0028 9.5E-08 46.1 3.0 22 16-37 26-47 (211)
411 4eaq_A DTMP kinase, thymidylat 96.2 0.0028 9.7E-08 46.8 3.0 24 15-38 26-49 (229)
412 3bos_A Putative DNA replicatio 96.2 0.003 1E-07 46.4 3.2 22 16-37 53-74 (242)
413 3r20_A Cytidylate kinase; stru 96.2 0.0032 1.1E-07 46.6 3.3 23 15-37 9-31 (233)
414 1nij_A Hypothetical protein YJ 96.2 0.0025 8.7E-08 49.5 2.7 24 15-38 4-27 (318)
415 2cvh_A DNA repair and recombin 96.2 0.003 1E-07 45.9 3.0 21 17-37 22-42 (220)
416 4dzz_A Plasmid partitioning pr 96.2 0.012 4.1E-07 42.2 6.2 85 64-156 76-162 (206)
417 1n0w_A DNA repair protein RAD5 96.2 0.003 1E-07 46.7 3.0 22 17-38 26-47 (243)
418 2w58_A DNAI, primosome compone 96.2 0.0034 1.2E-07 45.2 3.2 23 16-38 55-77 (202)
419 3kta_A Chromosome segregation 96.1 0.0031 1E-07 44.6 2.9 21 17-37 28-48 (182)
420 1tue_A Replication protein E1; 96.1 0.0028 9.5E-08 45.9 2.3 21 17-37 60-80 (212)
421 1ltq_A Polynucleotide kinase; 96.0 0.0039 1.3E-07 47.9 3.1 22 16-37 3-24 (301)
422 3n70_A Transport activator; si 96.0 0.0044 1.5E-07 42.2 3.0 24 16-39 25-48 (145)
423 1svm_A Large T antigen; AAA+ f 96.0 0.0038 1.3E-07 49.7 3.0 22 16-37 170-191 (377)
424 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0042 1.4E-07 51.9 3.4 22 17-38 49-70 (538)
425 2dpy_A FLII, flagellum-specifi 95.9 0.0042 1.4E-07 50.5 3.0 23 17-39 159-181 (438)
426 3b9p_A CG5977-PA, isoform A; A 95.9 0.0042 1.5E-07 47.5 2.9 23 16-38 55-77 (297)
427 3ozx_A RNAse L inhibitor; ATP 95.9 0.004 1.4E-07 52.0 3.0 22 17-38 27-48 (538)
428 3euj_A Chromosome partition pr 95.9 0.0043 1.5E-07 50.9 3.0 21 17-37 31-51 (483)
429 1njg_A DNA polymerase III subu 95.9 0.0046 1.6E-07 45.2 3.0 21 17-37 47-67 (250)
430 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0048 1.6E-07 46.2 3.0 23 15-37 39-61 (262)
431 3gmt_A Adenylate kinase; ssgci 95.9 0.0057 2E-07 45.1 3.3 25 13-37 6-30 (230)
432 3j16_B RLI1P; ribosome recycli 95.9 0.0047 1.6E-07 52.3 3.2 22 17-38 105-126 (608)
433 3h4m_A Proteasome-activating n 95.8 0.0052 1.8E-07 46.7 3.2 23 16-38 52-74 (285)
434 3cf0_A Transitional endoplasmi 95.8 0.0047 1.6E-07 47.6 2.9 23 16-38 50-72 (301)
435 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0061 2.1E-07 41.8 3.1 19 18-36 26-44 (149)
436 3b60_A Lipid A export ATP-bind 95.8 0.0047 1.6E-07 52.1 3.0 22 17-38 371-392 (582)
437 3b5x_A Lipid A export ATP-bind 95.8 0.0054 1.8E-07 51.8 3.3 22 17-38 371-392 (582)
438 1nlf_A Regulatory protein REPA 95.8 0.0048 1.6E-07 46.9 2.7 21 17-37 32-52 (279)
439 2qmh_A HPR kinase/phosphorylas 95.7 0.006 2.1E-07 43.9 2.8 24 16-39 35-58 (205)
440 3t15_A Ribulose bisphosphate c 95.7 0.0067 2.3E-07 46.5 3.3 23 16-38 37-59 (293)
441 2px0_A Flagellar biosynthesis 95.7 0.0056 1.9E-07 47.1 2.7 85 64-159 183-273 (296)
442 1l8q_A Chromosomal replication 95.7 0.0059 2E-07 47.4 2.9 23 16-38 38-60 (324)
443 3bk7_A ABC transporter ATP-bin 95.7 0.0062 2.1E-07 51.6 3.2 22 17-38 119-140 (607)
444 3ake_A Cytidylate kinase; CMP 95.7 0.0067 2.3E-07 43.7 3.0 21 17-37 4-24 (208)
445 3syl_A Protein CBBX; photosynt 95.7 0.0064 2.2E-07 46.7 3.0 23 15-37 67-89 (309)
446 1p5z_B DCK, deoxycytidine kina 95.7 0.0044 1.5E-07 46.6 2.1 26 13-38 22-47 (263)
447 3zvl_A Bifunctional polynucleo 95.7 0.0062 2.1E-07 49.2 3.0 23 16-38 259-281 (416)
448 1q3t_A Cytidylate kinase; nucl 95.7 0.0076 2.6E-07 44.6 3.3 24 14-37 15-38 (236)
449 1vma_A Cell division protein F 95.6 0.012 3.9E-07 45.5 4.4 93 64-169 187-291 (306)
450 1d2n_A N-ethylmaleimide-sensit 95.6 0.01 3.4E-07 44.8 4.0 26 13-38 62-87 (272)
451 3ozx_A RNAse L inhibitor; ATP 95.6 0.0062 2.1E-07 50.8 3.0 23 17-39 296-318 (538)
452 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0075 2.6E-07 50.4 3.4 23 17-39 314-336 (538)
453 3bk7_A ABC transporter ATP-bin 95.6 0.0068 2.3E-07 51.3 3.2 23 17-39 384-406 (607)
454 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0075 2.6E-07 47.8 3.1 19 18-36 26-44 (365)
455 2dr3_A UPF0273 protein PH0284; 95.6 0.0073 2.5E-07 44.6 2.9 21 17-37 25-45 (247)
456 4b4t_K 26S protease regulatory 95.5 0.0074 2.5E-07 48.8 3.0 23 16-38 207-229 (428)
457 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0092 3.2E-07 46.9 3.5 23 15-37 24-46 (359)
458 1ofh_A ATP-dependent HSL prote 95.5 0.0078 2.7E-07 46.1 3.0 23 16-38 51-73 (310)
459 4b4t_M 26S protease regulatory 95.5 0.0076 2.6E-07 48.8 3.0 25 14-38 214-238 (434)
460 2yl4_A ATP-binding cassette SU 95.5 0.0048 1.7E-07 52.2 2.0 22 17-38 372-393 (595)
461 1pzn_A RAD51, DNA repair and r 95.5 0.0071 2.4E-07 47.6 2.7 22 17-38 133-154 (349)
462 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.0077 2.6E-07 46.8 2.9 23 16-38 46-68 (322)
463 2qby_A CDC6 homolog 1, cell di 95.5 0.0072 2.5E-07 47.7 2.8 23 16-38 46-68 (386)
464 3qf4_B Uncharacterized ABC tra 95.5 0.0054 1.8E-07 51.9 2.1 22 17-38 383-404 (598)
465 3j16_B RLI1P; ribosome recycli 95.5 0.0082 2.8E-07 50.8 3.2 22 18-39 381-402 (608)
466 3crm_A TRNA delta(2)-isopenten 95.5 0.0085 2.9E-07 46.6 3.0 23 16-38 6-28 (323)
467 4b4t_L 26S protease subunit RP 95.4 0.0084 2.9E-07 48.6 3.0 25 14-38 214-238 (437)
468 1sxj_C Activator 1 40 kDa subu 95.4 0.0083 2.9E-07 46.9 2.9 22 17-38 48-69 (340)
469 4a82_A Cystic fibrosis transme 95.4 0.0047 1.6E-07 52.1 1.6 22 17-38 369-390 (578)
470 4fcw_A Chaperone protein CLPB; 95.4 0.013 4.6E-07 44.9 4.0 23 16-38 48-70 (311)
471 1fnn_A CDC6P, cell division co 95.4 0.0095 3.2E-07 47.2 3.3 22 17-38 46-67 (389)
472 3eie_A Vacuolar protein sortin 95.4 0.0096 3.3E-07 46.2 3.1 24 15-38 51-74 (322)
473 3a8t_A Adenylate isopentenyltr 95.4 0.01 3.5E-07 46.3 3.2 22 17-38 42-63 (339)
474 3d3q_A TRNA delta(2)-isopenten 95.4 0.0097 3.3E-07 46.6 3.1 22 16-37 8-29 (340)
475 1c9k_A COBU, adenosylcobinamid 95.3 0.011 3.7E-07 41.9 3.1 21 18-38 2-22 (180)
476 3qf4_A ABC transporter, ATP-bi 95.3 0.0064 2.2E-07 51.4 2.0 22 17-38 371-392 (587)
477 4b4t_J 26S protease regulatory 95.3 0.0098 3.3E-07 47.6 3.0 24 15-38 182-205 (405)
478 3u61_B DNA polymerase accessor 95.3 0.06 2E-06 41.6 7.4 21 18-38 51-71 (324)
479 3exa_A TRNA delta(2)-isopenten 95.2 0.012 4E-07 45.6 3.1 22 17-38 5-26 (322)
480 2r62_A Cell division protease 95.2 0.0047 1.6E-07 46.5 0.9 22 17-38 46-67 (268)
481 1sxj_D Activator 1 41 kDa subu 95.2 0.011 3.8E-07 46.2 3.0 22 17-38 60-81 (353)
482 2qgz_A Helicase loader, putati 95.2 0.013 4.4E-07 45.3 3.2 23 16-38 153-175 (308)
483 3cwq_A Para family chromosome 95.1 0.12 4.1E-06 37.3 8.3 85 64-156 68-153 (209)
484 3foz_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 45.2 3.1 23 16-38 11-33 (316)
485 2v1u_A Cell division control p 95.1 0.01 3.4E-07 46.9 2.6 23 16-38 45-67 (387)
486 3tqf_A HPR(Ser) kinase; transf 95.1 0.015 5E-07 40.9 3.1 24 16-39 17-40 (181)
487 4edh_A DTMP kinase, thymidylat 95.1 0.014 4.7E-07 42.6 3.1 22 16-37 7-28 (213)
488 3te6_A Regulatory protein SIR3 95.1 0.0095 3.3E-07 46.2 2.3 24 15-38 45-68 (318)
489 2ocp_A DGK, deoxyguanosine kin 95.1 0.015 5.3E-07 43.0 3.4 23 16-38 3-25 (241)
490 2qp9_X Vacuolar protein sortin 95.1 0.012 4.2E-07 46.4 3.0 23 16-38 85-107 (355)
491 3cr8_A Sulfate adenylyltranfer 95.1 0.0083 2.8E-07 50.2 2.1 23 16-38 370-392 (552)
492 2dhr_A FTSH; AAA+ protein, hex 95.1 0.012 4.1E-07 48.6 2.9 22 17-38 66-87 (499)
493 3uk6_A RUVB-like 2; hexameric 95.1 0.013 4.3E-07 46.2 3.0 22 17-38 72-93 (368)
494 4b4t_I 26S protease regulatory 95.1 0.013 4.4E-07 47.3 3.0 24 15-38 216-239 (437)
495 2ce7_A Cell division protein F 95.0 0.013 4.4E-07 48.1 3.0 22 17-38 51-72 (476)
496 2bjv_A PSP operon transcriptio 95.0 0.014 4.7E-07 43.9 3.0 24 16-39 30-53 (265)
497 3m6a_A ATP-dependent protease 95.0 0.012 4.2E-07 49.1 2.9 23 16-38 109-131 (543)
498 2iw3_A Elongation factor 3A; a 95.0 0.016 5.3E-07 51.7 3.6 24 17-40 463-486 (986)
499 3pxg_A Negative regulator of g 95.0 0.012 4.1E-07 48.3 2.8 23 16-38 202-224 (468)
500 3qks_A DNA double-strand break 95.0 0.016 5.4E-07 41.9 3.1 19 18-36 26-44 (203)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.2e-44 Score=265.08 Aligned_cols=169 Identities=38% Similarity=0.678 Sum_probs=144.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
-+.+||+|+|++|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 34589999999999999999999999999999999999999888989999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++++|+.+..|+..+......++|++||+||+|+.+ .+.+..++++.+++.++++|++|||++|.||+++|+.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 999999999999999999999888777899999999999965 5778999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 027918 173 IARDIKQRLA 182 (217)
Q Consensus 173 l~~~~~~~~~ 182 (217)
|++.+.....
T Consensus 170 i~~~i~~~~~ 179 (216)
T 4dkx_A 170 VAAALPGMES 179 (216)
T ss_dssp HHHHC-----
T ss_pred HHHHHHhhhc
Confidence 9988865443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8e-38 Score=231.70 Aligned_cols=171 Identities=58% Similarity=1.007 Sum_probs=155.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 46789999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887766799999999999965 345677888889999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 027918 172 SIARDIKQRLAD 183 (217)
Q Consensus 172 ~l~~~~~~~~~~ 183 (217)
+|.+.+......
T Consensus 164 ~l~~~i~~~~~~ 175 (206)
T 2bcg_Y 164 TMARQIKESMSQ 175 (206)
T ss_dssp HHHHHHHHHCCH
T ss_pred HHHHHHHHHHhh
Confidence 999998876443
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=221.44 Aligned_cols=171 Identities=35% Similarity=0.629 Sum_probs=148.4
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345679999999999999999999999888777777766444 4566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
+++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999887653 4789999999999865 3456778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 027918 170 FFSIARDIKQRLAD 183 (217)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (217)
|++|.+.+......
T Consensus 168 ~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 168 FFDLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 99999998876543
No 4
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.1e-36 Score=225.50 Aligned_cols=169 Identities=40% Similarity=0.715 Sum_probs=148.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999999988888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 166 (217)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+....+....++. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999998876543 368999999999986 34456677777877 56789999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 027918 167 EQVFFSIARDIKQRLA 182 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~~ 182 (217)
+++|++|.+.+.....
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 163 EQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999877654
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=226.69 Aligned_cols=174 Identities=49% Similarity=0.836 Sum_probs=145.2
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34577899999999999999999999999988888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887666799999999999864 3456677888899999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 027918 170 FFSIARDIKQRLADT 184 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (217)
|++|.+.+.......
T Consensus 167 ~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 167 FEELINTIYQKVSKH 181 (223)
T ss_dssp HHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999987654443
No 6
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.3e-35 Score=212.98 Aligned_cols=177 Identities=51% Similarity=0.902 Sum_probs=156.3
Q ss_pred CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918 4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (217)
Q Consensus 4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (217)
++..+....++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..
T Consensus 11 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 90 (189)
T 2gf9_A 11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA 90 (189)
T ss_dssp ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG
T ss_pred ccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH
Confidence 34445666788899999999999999999999999888777888888888788888888899999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
+++.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|
T Consensus 91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 999999999999999999999999999999887656799999999999864 3456677888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
.|++++|++|.+.+.++.
T Consensus 170 ~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 170 INVKQVFERLVDVICEKM 187 (189)
T ss_dssp BSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=217.75 Aligned_cols=176 Identities=47% Similarity=0.843 Sum_probs=145.6
Q ss_pred cccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918 5 PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (217)
Q Consensus 5 ~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 84 (217)
...++...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+
T Consensus 19 ~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (201)
T 2hup_A 19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98 (201)
T ss_dssp -------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHH
T ss_pred CCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH
Confidence 34456777888999999999999999999999998887778888888888888888888999999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (217)
++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...++ +++++||++|
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 99999999999999999999999999999887766799999999999864 345677888999999998 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
.|++++|++|.+.+....
T Consensus 178 ~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 178 SNVEEAFLRVATELIMRH 195 (201)
T ss_dssp BSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887654
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=7.6e-35 Score=213.28 Aligned_cols=178 Identities=48% Similarity=0.849 Sum_probs=154.6
Q ss_pred cccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918 5 PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (217)
Q Consensus 5 ~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 84 (217)
...+.....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+
T Consensus 11 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 90 (191)
T 2a5j_A 11 SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90 (191)
T ss_dssp CCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH
T ss_pred ccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH
Confidence 33446666788999999999999999999999998888778888888888888888888999999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTAC 169 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999999999999887666799999999999854 34567788889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 027918 165 NVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~~ 183 (217)
|++++|++|.+.+.++..+
T Consensus 170 gi~~l~~~l~~~i~~~~~~ 188 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQQ 188 (191)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999998876543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-35 Score=215.80 Aligned_cols=174 Identities=47% Similarity=0.838 Sum_probs=155.4
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 44567789999999999999999999999988888888888888888888998889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|+++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887766799999999999864 355677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 027918 169 VFFSIARDIKQRLAD 183 (217)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (217)
+|++|.+.+......
T Consensus 179 l~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 179 LFLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.6e-35 Score=213.34 Aligned_cols=171 Identities=71% Similarity=1.201 Sum_probs=126.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999888878888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++..++++++++||++|.|++++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887666799999999999965 355677888999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 027918 172 SIARDIKQRLAD 183 (217)
Q Consensus 172 ~l~~~~~~~~~~ 183 (217)
+|.+.+......
T Consensus 164 ~l~~~i~~~~~~ 175 (183)
T 2fu5_C 164 TLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999998876554
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=211.37 Aligned_cols=173 Identities=64% Similarity=1.074 Sum_probs=157.2
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34467899999999999999999999999988888888888898888999998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+....++..++++++++||++|.|++++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999999999888777899999999999965 4566778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 027918 170 FFSIARDIKQRLAD 183 (217)
Q Consensus 170 ~~~l~~~~~~~~~~ 183 (217)
|++|.+.+......
T Consensus 170 ~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 170 FMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999877554
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.4e-34 Score=209.47 Aligned_cols=174 Identities=45% Similarity=0.789 Sum_probs=156.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 45778999999999999999999999998888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++++|
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAF 164 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999999999998887666899999999999854 34567788888999999999999999999999999
Q ss_pred HHHHHHHHHHhcccC
Q 027918 171 FSIARDIKQRLADTD 185 (217)
Q Consensus 171 ~~l~~~~~~~~~~~~ 185 (217)
++|.+.+........
T Consensus 165 ~~l~~~~~~~~~~~~ 179 (186)
T 2bme_A 165 VQCARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999987766543
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=210.67 Aligned_cols=175 Identities=43% Similarity=0.783 Sum_probs=154.7
Q ss_pred cCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918 7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (217)
Q Consensus 7 ~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 86 (217)
...+..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34566788899999999999999999999999888877888888888788888888899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.. .+.+..++++.++...+++++++||++|.|+
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNV 175 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999999999877666799999999999865 3456678888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 027918 167 EQVFFSIARDIKQRLA 182 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~~ 182 (217)
+++|++|.+.+.++..
T Consensus 176 ~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 176 ELAFETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998877654
No 14
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-34 Score=210.61 Aligned_cols=174 Identities=51% Similarity=0.924 Sum_probs=156.3
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999999888877888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+.+..++..++++++++||++|.|++++
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 999999999999999999999999887656799999999999965 4556778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 027918 170 FFSIARDIKQRLADT 184 (217)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (217)
|++|.+.+.++....
T Consensus 162 ~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 162 FERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999988776554
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=207.30 Aligned_cols=172 Identities=56% Similarity=0.961 Sum_probs=152.8
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999998888888888888888888899988999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+++|||++++.++..+..|+..+..... +.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999999999999987654 689999999999865 45567788889999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 027918 171 FSIARDIKQRLADT 184 (217)
Q Consensus 171 ~~l~~~~~~~~~~~ 184 (217)
++|.+.+.....+.
T Consensus 163 ~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 163 NCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 99999988776543
No 16
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=212.16 Aligned_cols=175 Identities=44% Similarity=0.750 Sum_probs=145.1
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.+..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 44457789999999999999999999999988887888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+...++..++...+++++++||++|.|+++
T Consensus 99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887666799999999999854 345667788889999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 027918 169 VFFSIARDIKQRLADT 184 (217)
Q Consensus 169 l~~~l~~~~~~~~~~~ 184 (217)
+|++|.+.+.......
T Consensus 178 l~~~l~~~i~~~~~~~ 193 (200)
T 2o52_A 178 AFLKCARTILNKIDSG 193 (200)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998776543
No 17
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.8e-34 Score=205.90 Aligned_cols=166 Identities=61% Similarity=1.096 Sum_probs=144.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999998888888888888888888888878899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
|||++++.+++.+..|+..+......+.|+++|+||+|+. .+....+....++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988776679999999999993 35567788889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027918 174 ARDIKQRL 181 (217)
Q Consensus 174 ~~~~~~~~ 181 (217)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887643
No 18
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-35 Score=215.99 Aligned_cols=174 Identities=52% Similarity=0.944 Sum_probs=156.5
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.+...++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 35556788999999999999999999999998888888888888888888887777899999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+....++.+.++...+++++++||++|.|++
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 99999999999999999999999999887766899999999999865 45677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 027918 168 QVFFSIARDIKQRLA 182 (217)
Q Consensus 168 ~l~~~l~~~~~~~~~ 182 (217)
++|++|.+.+.++..
T Consensus 175 ~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 175 QAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887654
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.8e-34 Score=206.00 Aligned_cols=166 Identities=37% Similarity=0.763 Sum_probs=142.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46779999999999999999999999988887888888888878888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999999998776655789999999999865 345677888899999999999999999999999999
Q ss_pred HHHHHHH
Q 027918 172 SIARDIK 178 (217)
Q Consensus 172 ~l~~~~~ 178 (217)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998775
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.3e-34 Score=206.29 Aligned_cols=169 Identities=39% Similarity=0.705 Sum_probs=150.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999988887788888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999887766799999999999965 355677888899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 027918 172 SIARDIKQRL 181 (217)
Q Consensus 172 ~l~~~~~~~~ 181 (217)
+|.+.+....
T Consensus 168 ~l~~~~~~~~ 177 (181)
T 2efe_B 168 EIARRLPRVQ 177 (181)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhcC
Confidence 9998775443
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7.6e-34 Score=205.31 Aligned_cols=168 Identities=46% Similarity=0.846 Sum_probs=151.3
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999888777888888888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887766899999999999854 3456778888999999999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 170 FFSIARDIK 178 (217)
Q Consensus 170 ~~~l~~~~~ 178 (217)
|++|.+.+.
T Consensus 169 ~~~l~~~i~ 177 (179)
T 1z0f_A 169 FLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998774
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=210.64 Aligned_cols=170 Identities=45% Similarity=0.869 Sum_probs=144.3
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
..+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 44457789999999999999999999999888877788888888888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE 167 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 167 (217)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++... +++++++||++|.|++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999999887766899999999999854 3456677788888874 7899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 168 QVFFSIARDIKQ 179 (217)
Q Consensus 168 ~l~~~l~~~~~~ 179 (217)
++|++|.+.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=203.37 Aligned_cols=169 Identities=53% Similarity=0.969 Sum_probs=142.6
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3467899999999999999999999998875 466777788887777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999999887766799999999999965 4556777888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 170 FFSIARDIKQR 180 (217)
Q Consensus 170 ~~~l~~~~~~~ 180 (217)
|++|.+.+.++
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999888643
No 24
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.1e-33 Score=204.82 Aligned_cols=169 Identities=36% Similarity=0.619 Sum_probs=144.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3568999999999999999999999887776666654 444566778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ......+....++...+++++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999887754 3478999999999986 355677888999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 027918 172 SIARDIKQRLADT 184 (217)
Q Consensus 172 ~l~~~~~~~~~~~ 184 (217)
+|.+.+.......
T Consensus 159 ~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 159 TLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9999998776543
No 25
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8e-34 Score=208.81 Aligned_cols=164 Identities=33% Similarity=0.509 Sum_probs=140.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999998887766666654443 44567777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ..+..++...++...+++++++||++|.|++++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 99999999999999988887766543 3689999999999864 4556778888889999999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 171 FSIARDIKQ 179 (217)
Q Consensus 171 ~~l~~~~~~ 179 (217)
++|.+.+..
T Consensus 163 ~~l~~~~~~ 171 (199)
T 2gf0_A 163 QELLTLETR 171 (199)
T ss_dssp HHHHHHCSS
T ss_pred HHHHHHHhh
Confidence 999887643
No 26
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-33 Score=207.84 Aligned_cols=173 Identities=60% Similarity=1.073 Sum_probs=152.0
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 44456779999999999999999999999988888888888888888888898888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
|++++|||++++.+++.+..|+..+......+.|+++|+||+|+. .+....++...++...+++++++||++|.|+++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999988776679999999999993 455677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 027918 169 VFFSIARDIKQRLAD 183 (217)
Q Consensus 169 l~~~l~~~~~~~~~~ 183 (217)
+|++|.+.+.+....
T Consensus 172 l~~~l~~~~~~~~~~ 186 (213)
T 3cph_A 172 IFFTLAKLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876643
No 27
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.9e-34 Score=213.46 Aligned_cols=176 Identities=48% Similarity=0.879 Sum_probs=150.8
Q ss_pred cCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe----------EEEEEEeeCCCccc
Q 027918 7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQER 76 (217)
Q Consensus 7 ~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~ 76 (217)
......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.||||||++.
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 96 (217)
T 2f7s_A 17 RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER 96 (217)
T ss_dssp ----CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred CcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence 34566688899999999999999999999999888777888887777777777655 68999999999999
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeE
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKF 155 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (217)
+...+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...++++
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPY 175 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCE
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcE
Confidence 999999999999999999999999999999999887765443 4789999999999864 34566788889999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918 156 FETSAKTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
+++||++|.|++++|++|.+.+.++...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876554
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.8e-34 Score=208.75 Aligned_cols=171 Identities=36% Similarity=0.697 Sum_probs=149.4
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
+.+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 34556778999999999999999999999998877778888888877778888778999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999999999999999999887766799999999999854 35567788899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 168 QVFFSIARDIKQ 179 (217)
Q Consensus 168 ~l~~~l~~~~~~ 179 (217)
++|++|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (192)
T 2fg5_A 175 ELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 29
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=202.00 Aligned_cols=163 Identities=44% Similarity=0.750 Sum_probs=147.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999988877888888888888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|++++.++..+..|+..+......+.|+++|+||+|+.... ..+..+..+.++...+++++++||++|.|++++|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999988776679999999999985432 556778888899999999999999999999999999
Q ss_pred HHHHH
Q 027918 173 IARDI 177 (217)
Q Consensus 173 l~~~~ 177 (217)
|.+.+
T Consensus 163 l~~~i 167 (170)
T 1ek0_A 163 IGEKI 167 (170)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 88654
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.6e-33 Score=200.85 Aligned_cols=165 Identities=38% Similarity=0.716 Sum_probs=149.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999988887888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+....++...+++++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999999999999999887666799999999999865 345667888889999999999999999999999999
Q ss_pred HHHHHH
Q 027918 172 SIARDI 177 (217)
Q Consensus 172 ~l~~~~ 177 (217)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.5e-33 Score=202.00 Aligned_cols=164 Identities=46% Similarity=0.811 Sum_probs=147.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999998888777788888887788888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887666799999999999864 3456677888899999999999999999999999999
Q ss_pred HHHHH
Q 027918 173 IARDI 177 (217)
Q Consensus 173 l~~~~ 177 (217)
|.+.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98765
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.6e-33 Score=204.33 Aligned_cols=172 Identities=49% Similarity=0.881 Sum_probs=151.2
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE-EEEEEECCe---------EEEEEEeeCCCcccccch
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI 80 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~ 80 (217)
..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.|||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4577899999999999999999999998888777888877776 556666654 689999999999999999
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...+++++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999887664 5789999999999864 345667888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcc
Q 027918 160 AKTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
|++|.|++++|++|.+.+.++...
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876654
No 33
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=210.38 Aligned_cols=171 Identities=45% Similarity=0.770 Sum_probs=138.4
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 34555677999999999999999999999998877777888878877888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ..+.+..+..+.++...+++++++||++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 99999999999999999999999999877666799999999999852 2456677888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDIK 178 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~ 178 (217)
|.|++++|++|.+.+.
T Consensus 181 g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.5e-33 Score=201.81 Aligned_cols=164 Identities=37% Similarity=0.700 Sum_probs=147.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+ .+....++++.++...+++++++||++|.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999887765 4689999999999864 3456678888899999999999999999999999999
Q ss_pred HHHHHH
Q 027918 173 IARDIK 178 (217)
Q Consensus 173 l~~~~~ 178 (217)
|.+.+.
T Consensus 161 l~~~~~ 166 (168)
T 1z2a_A 161 LAEKHL 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998775
No 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.8e-33 Score=202.99 Aligned_cols=168 Identities=32% Similarity=0.486 Sum_probs=147.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4579999999999999999999998888877777777666 666778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999998866543 4789999999999965 566788899999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 027918 172 SIARDIKQRLA 182 (217)
Q Consensus 172 ~l~~~~~~~~~ 182 (217)
+|.+.+.....
T Consensus 162 ~l~~~~~~~~~ 172 (181)
T 3t5g_A 162 RIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcC
Confidence 99998865543
No 36
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.6e-33 Score=205.90 Aligned_cols=170 Identities=43% Similarity=0.820 Sum_probs=145.5
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-chhhhccc
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYR 86 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~ 86 (217)
+.......+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+. .++..+++
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence 45555678999999999999999999999998888888888888888888888888999999999999988 78889999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC--
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-- 163 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-- 163 (217)
.+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPND 171 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCc
Confidence 9999999999999999999999999998765 45799999999999854 3456778888999999999999999999
Q ss_pred -CCHHHHHHHHHHHHH
Q 027918 164 -LNVEQVFFSIARDIK 178 (217)
Q Consensus 164 -~~i~~l~~~l~~~~~ 178 (217)
.|++++|++|.+.+.
T Consensus 172 ~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GSCHHHHHHHHC----
T ss_pred ccCHHHHHHHHHHHHh
Confidence 999999999988764
No 37
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=7e-33 Score=201.24 Aligned_cols=167 Identities=35% Similarity=0.589 Sum_probs=148.6
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999888877778777666 6677788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC-CCCCHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQ 168 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~ 168 (217)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++++.++..++++++++||+ +|.|+++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 999999999999999999999886643 35789999999999965 56678888999999999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 027918 169 VFFSIARDIKQ 179 (217)
Q Consensus 169 l~~~l~~~~~~ 179 (217)
+|++|.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.9e-33 Score=200.46 Aligned_cols=166 Identities=40% Similarity=0.696 Sum_probs=144.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999999988888888888888888888898889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 166 (217)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999999877653 578999999999986 35567778888887 55689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+..
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=207.20 Aligned_cols=171 Identities=27% Similarity=0.377 Sum_probs=141.8
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-hhhhccc
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYR 86 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~ 86 (217)
.+...+..++|+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 344557789999999999999999999976544434445556666677778888889999999999987765 7778899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.|
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999999999999999998877653 4789999999999965 455677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQ 179 (217)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (217)
++++|++|++.+..
T Consensus 175 v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 175 TRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5.7e-33 Score=201.06 Aligned_cols=168 Identities=35% Similarity=0.600 Sum_probs=147.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.|||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 45699999999999999999999999887777777776655 66778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 999999999999999999888543 345789999999999865 345677888889999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 027918 172 SIARDIKQRLA 182 (217)
Q Consensus 172 ~l~~~~~~~~~ 182 (217)
+|.+.+.+...
T Consensus 165 ~l~~~~~~~~~ 175 (181)
T 2fn4_A 165 QLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhhc
Confidence 99999876654
No 41
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.3e-33 Score=203.31 Aligned_cols=170 Identities=42% Similarity=0.703 Sum_probs=135.9
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999998888888888878877777776 455899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCC
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLN 165 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 165 (217)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+....+.+..++...++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999998877653 5789999999999965555667788888887 4568999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027918 166 VEQVFFSIARDIKQRL 181 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (217)
++++|++|.+.+.++.
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.1e-33 Score=209.29 Aligned_cols=171 Identities=20% Similarity=0.455 Sum_probs=144.6
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 3445679999999999999999999999998888888877665 355667777799999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027918 90 GILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF 156 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (217)
++|+|||++++.++.. +..|+..+..... +.|+++|+||+|+.++ .+.+..+++..++..+++ +++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999998 6889999988764 6899999999998653 356788899999999998 999
Q ss_pred EEcCCCCCC-HHHHHHHHHHHHHHHhc
Q 027918 157 ETSAKTNLN-VEQVFFSIARDIKQRLA 182 (217)
Q Consensus 157 ~~Sa~~~~~-i~~l~~~l~~~~~~~~~ 182 (217)
++||++|.| ++++|++|.+.+.....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998875543
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.3e-33 Score=204.04 Aligned_cols=166 Identities=34% Similarity=0.545 Sum_probs=144.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4579999999999999999999999888777778887788888888876 568999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988876432 2344899999999864 345667888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 169 VFFSIARDIKQ 179 (217)
Q Consensus 169 l~~~l~~~~~~ 179 (217)
+|++|.+.+..
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.9e-33 Score=199.95 Aligned_cols=165 Identities=28% Similarity=0.395 Sum_probs=132.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-hhhhcccCCcEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~ 93 (217)
.+||+|+|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999998777666666666777888888899889999999999998876 77778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 9999999999999999999887654 4689999999999864 4667888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 027918 173 IARDIKQR 180 (217)
Q Consensus 173 l~~~~~~~ 180 (217)
|.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99987654
No 45
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.6e-32 Score=202.50 Aligned_cols=168 Identities=33% Similarity=0.614 Sum_probs=147.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------------------
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR--------------------------- 63 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 63 (217)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 34567999999999999999999999998888888888888887777777655
Q ss_pred ----------EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 64 ----------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 64 ----------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
+.+.||||||++.+...+..+++.+|++++|||++++.++..+..|+..+..... .|+++|+||+|+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~- 159 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK- 159 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-
Confidence 7999999999999999999999999999999999999999999999999887653 899999999993
Q ss_pred CCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
.......+++..++...+++++++||++|.|++++|++|.+.+..+.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 345677888999999999999999999999999999999998876643
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.6e-33 Score=201.29 Aligned_cols=166 Identities=24% Similarity=0.382 Sum_probs=141.7
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.......+||+|+|++|+|||||+++|++..+...+.++.+ .+...+.+++..+.+.||||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 44556679999999999999999999999988876666632 344777889988999999999998766 77889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMD-ESKRAVPTSKGQALADEYG-IKFFETSAKTNLN 165 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 165 (217)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+.+..+++..++..++ ++++++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999987653 468999999999985 2345677888999999987 8999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027918 166 VEQVFFSIARDIKQRL 181 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (217)
++++|++|.+.+...+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887664
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=3.1e-33 Score=202.09 Aligned_cols=165 Identities=40% Similarity=0.715 Sum_probs=148.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999999888888888888888888888988889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999877666799999999999865 3456677888888999999999999999999999999
Q ss_pred HHHHHH
Q 027918 173 IARDIK 178 (217)
Q Consensus 173 l~~~~~ 178 (217)
|.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987653
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=198.50 Aligned_cols=168 Identities=30% Similarity=0.452 Sum_probs=134.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--ccchhhhcccCCcE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG 90 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~ 90 (217)
++.++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 457999999999999999999999987764433 455566667778888888999999999987 56677788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 999999999999999999998887653 34689999999999965 3556677888888889999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 027918 170 FFSIARDIKQRLA 182 (217)
Q Consensus 170 ~~~l~~~~~~~~~ 182 (217)
|++|.+.+..+..
T Consensus 160 ~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 160 FEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876654
No 49
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-33 Score=209.28 Aligned_cols=168 Identities=32% Similarity=0.622 Sum_probs=142.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35679999999999999999999999888777777776544 45566777779999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------ccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKT 162 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (217)
|+|||++++++++.+. .|+..+..... +.|+++|+||+|+.+... .+..+++..++..++. +++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999987 79998887654 689999999999855321 2367788889998885 999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 027918 163 NLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (217)
|.|++++|++|.+.+....
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999886543
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=9e-33 Score=202.65 Aligned_cols=171 Identities=29% Similarity=0.550 Sum_probs=146.9
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.......+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 344567799999999999999999999999888777777776655 4567788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhCCe-EEEEcCCCCCC
Q 027918 89 MGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLN 165 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 165 (217)
|++++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.++ .+.+..+++..++..+++. ++++||++|.|
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 999999999999999997 668888876653 6899999999998653 3567788899999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027918 166 VEQVFFSIARDIKQRL 181 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (217)
++++|++|.+.+..+.
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999886543
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=207.34 Aligned_cols=173 Identities=28% Similarity=0.494 Sum_probs=142.1
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
..+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 45556789999999999999999999999998877777776655 45556666668999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 999999999999999999999999876532 4689999999999865 45677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 027918 168 QVFFSIARDIKQRLAD 183 (217)
Q Consensus 168 ~l~~~l~~~~~~~~~~ 183 (217)
++|++|.+.+......
T Consensus 176 ~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 176 GIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998766543
No 52
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=203.62 Aligned_cols=167 Identities=28% Similarity=0.461 Sum_probs=139.4
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+... ..+++.+
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ 92 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence 44456779999999999999999999999988877777777555 355677888899999999999988874 6789999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC-CCCC
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNL 164 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~ 164 (217)
|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..+++..++..++++++++|| ++|.
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 99999999999999999999999987764 24789999999999854 4567788899999999999999999 8999
Q ss_pred CHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIK 178 (217)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (217)
|++++|++|.+.+.
T Consensus 172 gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 172 HVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998774
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=201.72 Aligned_cols=169 Identities=47% Similarity=0.810 Sum_probs=150.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 33457999999999999999999999998888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..++...++...+++++++||++|.|++++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999999998876542 468999999999984 3456678888999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 027918 170 FFSIARDIKQRL 181 (217)
Q Consensus 170 ~~~l~~~~~~~~ 181 (217)
|++|.+.+....
T Consensus 169 ~~~l~~~~~~~~ 180 (195)
T 1x3s_A 169 FEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhhh
Confidence 999999887543
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=202.51 Aligned_cols=172 Identities=30% Similarity=0.506 Sum_probs=138.7
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
.......++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+..++..+++++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34456789999999999999999999999887766667665444 45667788888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eE
Q 027918 89 MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KF 155 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~ 155 (217)
|++++|||++++.++..+. .|+..+..... +.|+++|+||+|+... .+.+..++...++...+. ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999997 69988887654 6899999999998652 345677888899998887 99
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 156 FETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+++||++|.|++++|++|.+.+.....
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999998876654
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-32 Score=200.68 Aligned_cols=167 Identities=28% Similarity=0.537 Sum_probs=144.7
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
.+....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 4445779999999999999999999999888777777766554 455667777789999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEE
Q 027918 90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFF 156 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~ 156 (217)
++++|||+++++++..+. .|+..+..... +.|+++|+||+|+.+.. +.+..++...++...+. +++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV 170 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999987 79988887654 68999999999996532 45677888899999887 999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q 027918 157 ETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
++||++|.|++++|++|.+.+.
T Consensus 171 ~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 171 ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.3e-33 Score=208.91 Aligned_cols=170 Identities=25% Similarity=0.476 Sum_probs=112.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEECCe--EEEEEEeeCCCcccccchhhhcccCC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.||||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999998 676677777777777778888876 78999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC-CC
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NL 164 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 164 (217)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..+.+..+++..++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 57999999999998652355677889999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 027918 165 NVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~ 182 (217)
|++++|++|.+.+.....
T Consensus 178 gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYE 195 (208)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 57
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=202.48 Aligned_cols=172 Identities=28% Similarity=0.401 Sum_probs=137.8
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhccc
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYR 86 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~ 86 (217)
.......+||+|+|++|+|||||+++|.+.... ....++.+.+++...+.+++..+.+.+|||+|.+. +..+...+++
T Consensus 31 ~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 31 SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred cccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 345567799999999999999999999964432 22233455666667778888888999999999876 4556677889
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
.++++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.|
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999999988887542 34689999999999964 355667777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 027918 166 VEQVFFSIARDIKQRL 181 (217)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (217)
++++|++|.+.+....
T Consensus 190 v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 190 VKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999886543
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.2e-32 Score=197.43 Aligned_cols=169 Identities=35% Similarity=0.626 Sum_probs=146.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34579999999999999999999999888777666665444 45567788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++|.|++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 999999999999999999998877654 4789999999999865 34567788889999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 027918 171 FSIARDIKQRLA 182 (217)
Q Consensus 171 ~~l~~~~~~~~~ 182 (217)
++|.+.+..++.
T Consensus 173 ~~l~~~i~~~~~ 184 (187)
T 2a9k_A 173 FDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999998876543
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=3.3e-32 Score=194.56 Aligned_cols=163 Identities=36% Similarity=0.662 Sum_probs=139.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999888776666665444 3556778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+....+++..++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999998877654 4789999999999865 3456778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027918 173 IARDIK 178 (217)
Q Consensus 173 l~~~~~ 178 (217)
|.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=4.6e-32 Score=196.10 Aligned_cols=164 Identities=24% Similarity=0.389 Sum_probs=136.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+|+|++|+|||||+++|.++.+.. +.++.+.. +...+.+++..+.+.+|||||++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 456999999999999999999999988876 55665533 456677888889999999999875 45778899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE 167 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 167 (217)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ..+.+..++++.++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665543 24789999999999852 24567778888888876 5899999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 027918 168 QVFFSIARDIKQRLAD 183 (217)
Q Consensus 168 ~l~~~l~~~~~~~~~~ 183 (217)
++|++|.+.+......
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988776543
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.1e-32 Score=194.06 Aligned_cols=163 Identities=32% Similarity=0.460 Sum_probs=121.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.+||+|+|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665432 23333333 45567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999999887653 35789999999999965 46677888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 027918 174 ARDIKQR 180 (217)
Q Consensus 174 ~~~~~~~ 180 (217)
.+.+..+
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988654
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.5e-32 Score=193.41 Aligned_cols=161 Identities=35% Similarity=0.683 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999998887777777665543 5566777778999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+....++...++... +.+++++||++|.|++++|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999998887653 34789999999999865 3556678888888887 789999999999999999999
Q ss_pred HHHHH
Q 027918 173 IARDI 177 (217)
Q Consensus 173 l~~~~ 177 (217)
|.+.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.9e-32 Score=193.47 Aligned_cols=163 Identities=36% Similarity=0.615 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+|+|++|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999988877666666533 356677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+....++.+.++...+++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988876543 4789999999999854 35566778888999999999999999999999999999
Q ss_pred HHHHHH
Q 027918 174 ARDIKQ 179 (217)
Q Consensus 174 ~~~~~~ 179 (217)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987743
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-32 Score=198.17 Aligned_cols=168 Identities=34% Similarity=0.567 Sum_probs=144.4
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||+||++. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345679999999999999999999999988877777776554 45567788889999999999988 7788889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQ 168 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~ 168 (217)
+++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|. |+++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 999999999999999999999887754 35789999999999865 35567788889999999999999999999 9999
Q ss_pred HHHHHHHHHHHHh
Q 027918 169 VFFSIARDIKQRL 181 (217)
Q Consensus 169 l~~~l~~~~~~~~ 181 (217)
+|++|.+.+.+..
T Consensus 181 l~~~l~~~i~~~~ 193 (196)
T 2atv_A 181 IFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887654
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.9e-31 Score=194.86 Aligned_cols=171 Identities=36% Similarity=0.581 Sum_probs=134.3
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
+.+.-..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence 44445669999999999999999999999887766666655443 45667788888999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....++++.++...+++++++||++|.|++
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999999999999999988877653 4689999999999865 4566788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 027918 168 QVFFSIARDIKQRLA 182 (217)
Q Consensus 168 ~l~~~l~~~~~~~~~ 182 (217)
++|++|.+.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 172 DAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.7e-32 Score=198.52 Aligned_cols=165 Identities=24% Similarity=0.539 Sum_probs=141.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999988777777776555 34566777789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027918 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET 158 (217)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (217)
++|||++++++++.+ ..|+..+..... +.|+++|+||+|+.++ .+.+..+++..++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 679888877654 6899999999998642 24567788899999887 799999
Q ss_pred cCC-CCCCHHHHHHHHHHHHH
Q 027918 159 SAK-TNLNVEQVFFSIARDIK 178 (217)
Q Consensus 159 Sa~-~~~~i~~l~~~l~~~~~ 178 (217)
||+ ++.|++++|+.|.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999998775
No 67
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-32 Score=200.59 Aligned_cols=166 Identities=24% Similarity=0.537 Sum_probs=142.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
.+..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 46679999999999999999999999988877777776555 34566777779999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027918 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET 158 (217)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 158 (217)
|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.++ .+.+..++++.++..++ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 679988877654 6899999999998642 24567788889998887 699999
Q ss_pred cCC-CCCCHHHHHHHHHHHHHH
Q 027918 159 SAK-TNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 159 Sa~-~~~~i~~l~~~l~~~~~~ 179 (217)
||+ ++.|++++|+.|.+.+..
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999988764
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=2.6e-31 Score=196.02 Aligned_cols=165 Identities=32% Similarity=0.596 Sum_probs=142.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 467799999999999999999999998888777777766654 3467788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027918 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET 158 (217)
Q Consensus 92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~ 158 (217)
++|||+++++++..+ ..|+..+..... +.|+++|+||+|+.... +.+..++...++...+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999998 578888877654 68999999999986531 34667788888888887 89999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (217)
||++|.|++++|++|.+.+.
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.3e-31 Score=194.78 Aligned_cols=163 Identities=32% Similarity=0.615 Sum_probs=141.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999888776666665444 4556778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcC
Q 027918 94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 160 (217)
Q Consensus 94 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (217)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. +.+..++...++...+. +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999987 69888887655 68999999999986531 45667788888988886 9999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027918 161 KTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (217)
++|.|++++|++|.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHh
Confidence 999999999999998874
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.6e-32 Score=202.35 Aligned_cols=171 Identities=31% Similarity=0.510 Sum_probs=145.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (217)
.+..+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.||||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999888877777777766666665554 334889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (217)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+....++...+++++++||++|.|++++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999888776799999999999865 45677788888888889999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 027918 171 FSIARDIKQRLAD 183 (217)
Q Consensus 171 ~~l~~~~~~~~~~ 183 (217)
++|.+.+......
T Consensus 167 ~~l~~~~~~~~~~ 179 (218)
T 4djt_A 167 LHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHhccccc
Confidence 9999988665443
No 71
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=212.61 Aligned_cols=168 Identities=65% Similarity=1.089 Sum_probs=141.5
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
...++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34467899999999999999999999999888888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++..++++++++||++|.|++++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999999999999887766899999999999965 3445556677888889999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 170 FFSIARDIK 178 (217)
Q Consensus 170 ~~~l~~~~~ 178 (217)
|++|.+.+.
T Consensus 187 ~~~l~~~l~ 195 (199)
T 3l0i_B 187 FMTMAAEIK 195 (199)
T ss_dssp HHHHTTTTT
T ss_pred HHHHHHHHH
Confidence 999987653
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=199.16 Aligned_cols=167 Identities=34% Similarity=0.610 Sum_probs=123.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999999887766666665433 456677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.... +.+..++...++...+. +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999987 69888877653 68999999999986532 25667788889998887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh
Q 027918 160 AKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (217)
|++|.|++++|++|.+.+.+..
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 73
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.5e-31 Score=196.68 Aligned_cols=173 Identities=16% Similarity=0.299 Sum_probs=129.3
Q ss_pred ccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918 6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (217)
Q Consensus 6 ~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 84 (217)
+.+..+....++|+|+|.+|+|||||+++|.+..+.. .+.++.+. ....+...+ +.+.||||||++.+..++..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGR--VAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCC--EEEEEEECCCCHhHHHHHHHH
Confidence 3445666788999999999999999999999998877 66777663 334445555 799999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHhCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSK---GQALADEYGI 153 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~pvivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~ 153 (217)
++.+|++|+|||+++++++..+..|+..+..... .+.|+++|+||+|+........... ...++...++
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 9999999999999999999999998888765421 2689999999999965321111111 1111244567
Q ss_pred eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 154 KFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+++++||++|.|++++|++|.+.+.....
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999877644
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=7.9e-31 Score=186.87 Aligned_cols=161 Identities=37% Similarity=0.638 Sum_probs=140.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (217)
.++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999887766666655433 45567788788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+....++...+++++++||++|.|+++++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998877653 3689999999999865 4566788888999999999999999999999999999
Q ss_pred HHHHH
Q 027918 174 ARDIK 178 (217)
Q Consensus 174 ~~~~~ 178 (217)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T 2ce2_X 160 VREIR 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98774
No 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-31 Score=190.90 Aligned_cols=162 Identities=32% Similarity=0.498 Sum_probs=138.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998877666666654443 445667777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (217)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+...+.+.++...+++++++||++|.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999999999888876542 3689999999999854 345666778888888999999999999999999999
Q ss_pred HHHHHH
Q 027918 172 SIARDI 177 (217)
Q Consensus 172 ~l~~~~ 177 (217)
+|.+.+
T Consensus 160 ~l~~~~ 165 (172)
T 2erx_A 160 ELLNLE 165 (172)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998755
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=5.4e-32 Score=198.59 Aligned_cols=168 Identities=23% Similarity=0.308 Sum_probs=135.7
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------cccceeeeEEEEEE-EECCeEEEEEEeeCCCccccc
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFR 78 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~ 78 (217)
..+..+||+|+|++|+|||||++.+.+. +... ..++.+.++....+ ..++..+.+.||||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4467899999999999999999777654 3333 23344444444434 456677899999999999999
Q ss_pred chhhhcccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC
Q 027918 79 TITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 152 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (217)
..+..+++.+|++|+|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.+ ....++++.++...+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG 164 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcC
Confidence 99999999999999999999 45677777778777632 234799999999999855 367788899999999
Q ss_pred C-eEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918 153 I-KFFETSAKTNLNVEQVFFSIARDIKQRLAD 183 (217)
Q Consensus 153 ~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (217)
+ +++++||++|.|++++|++|.+.+..+..+
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 8 999999999999999999999999877653
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.7e-31 Score=195.04 Aligned_cols=165 Identities=34% Similarity=0.602 Sum_probs=136.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34689999999999999999999998887777777665554 34677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.++..+ ..|+..+..... +.|+++|+||+|+.... +.+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 568888877553 68999999999986531 34566778888888887 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (217)
|++|.|++++|++|.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=5.7e-32 Score=202.34 Aligned_cols=170 Identities=31% Similarity=0.609 Sum_probs=147.6
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.+......+||+|+|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.||||||++.+..++..+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34556778999999999999999999977776666777777788888888888888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
+|++++|||++++.++..+..|+..+..... +.|+++|+||+|+.+... ..+...++...+++++++||++|.|++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999988764 689999999999865322 235556788889999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027918 168 QVFFSIARDIKQRL 181 (217)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (217)
++|++|.+.+....
T Consensus 164 ~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 164 KPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999887654
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=5.5e-32 Score=196.20 Aligned_cols=164 Identities=32% Similarity=0.638 Sum_probs=125.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45689999999999999999999998877666666553332 23445566688899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------ccChHHHHHHHHHhCC-eEEEEcCC
Q 027918 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAK 161 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (217)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+... .+..++...++...+. +++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999997 69988887654 689999999999855322 2466778889988886 99999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIK 178 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (217)
+|.|++++|++|.+.+.
T Consensus 164 ~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCTTHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988763
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=2.5e-30 Score=189.44 Aligned_cols=167 Identities=29% Similarity=0.433 Sum_probs=134.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhcccCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d 89 (217)
...+||+|+|++|+|||||+++|.+.. +... .++.+.++....+.+++..+.+.+|||+|.+. +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999999633 2332 23455566667778888888999999999776 4556777889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|+++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 9999999999999999999988887653 34689999999999864 345666777788888889999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 027918 169 VFFSIARDIKQRL 181 (217)
Q Consensus 169 l~~~l~~~~~~~~ 181 (217)
+|++|.+.+....
T Consensus 162 lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 162 LFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999886543
No 81
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=8.2e-30 Score=187.69 Aligned_cols=169 Identities=49% Similarity=0.849 Sum_probs=147.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999999888777788888888888889998899999999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (217)
+|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+ ......+++..++...++.++++|++++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999998998888766555689999999999864 3455667788899999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 027918 173 IARDIKQRLA 182 (217)
Q Consensus 173 l~~~~~~~~~ 182 (217)
|.+.+.....
T Consensus 162 l~~~~~~~~~ 171 (199)
T 2f9l_A 162 ILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=9.1e-31 Score=193.57 Aligned_cols=163 Identities=32% Similarity=0.606 Sum_probs=137.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...+||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4569999999999999999999999888776666664 444566677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... +.+..++...++...+. +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999997 6988888776 468999999999986532 23667788888888885 699999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~ 177 (217)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.4e-31 Score=195.47 Aligned_cols=169 Identities=21% Similarity=0.379 Sum_probs=129.1
Q ss_pred CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918 4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (217)
Q Consensus 4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (217)
+.+++.......++|+|+|++|+|||||+++|.+..+...+.++.+..+. .+...+ +.+.|||+||++.+...+..
T Consensus 11 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~ 86 (188)
T 1zd9_A 11 SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWER 86 (188)
T ss_dssp --------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHH
T ss_pred cccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHH
Confidence 34444555567899999999999999999999998887767777665554 344555 78999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEE
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFE 157 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 157 (217)
+++.+|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ..++++++
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEE
Confidence 9999999999999999999999999888876542 2478999999999986521 2222222111 23468999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHH
Q 027918 158 TSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
+||++|.|++++|++|.+.+..
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887643
No 84
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=189.61 Aligned_cols=164 Identities=18% Similarity=0.327 Sum_probs=129.0
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
.......++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.||||||++.+...+..+++.
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 3444567999999999999999999999877 4555555554 4555666666 789999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEc
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETS 159 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~S 159 (217)
+|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.. ....+++..+.. ..+++++++|
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEcc
Confidence 9999999999999999999999888876543 4789999999999854 233455555543 2356899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (217)
|++|.|++++|++|.+.+..
T Consensus 168 a~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999887643
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.6e-30 Score=184.68 Aligned_cols=159 Identities=23% Similarity=0.414 Sum_probs=126.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.++.+.. +.++.+ .....+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 345899999999999999999999887653 344444 4445556665 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i 166 (217)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+.... +...+++++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 9999999999999988887776543 2468999999999986532 12222221 2233568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~i~~ 169 (171)
T 1upt_A 157 DEAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 86
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=6.6e-29 Score=181.75 Aligned_cols=168 Identities=50% Similarity=0.878 Sum_probs=147.7
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (217)
....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 44557789999999999999999999999988888888888888888889999888899999999999998899999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (217)
+++++|+|..+..+++.+..|+..+......+.|+++|+||+|+.+ ........+..++...++.++++|++++.++++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999988898887765555689999999999864 344566778889999999999999999999999
Q ss_pred HHHHHHHHH
Q 027918 169 VFFSIARDI 177 (217)
Q Consensus 169 l~~~l~~~~ 177 (217)
+|++|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.1e-29 Score=183.40 Aligned_cols=159 Identities=23% Similarity=0.394 Sum_probs=127.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.+.. ...+.++.+ .....+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 466999999999999999999999887 555566655 3344555665 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 9999999999999999888876542 246899999999998653 22233332221 23568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+.+
T Consensus 168 ~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 168 LPGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=8.4e-31 Score=186.86 Aligned_cols=156 Identities=21% Similarity=0.410 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 95 (217)
+||+|+|++|+|||||+++|.++.+.. +.++.+ .....+..++ +.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 345544 3334444544 78999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHHHH
Q 027918 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 96 d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l 169 (217)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 999999999999988887653 2346899999999998652 1222222211 123457999999999999999
Q ss_pred HHHHHHHHHH
Q 027918 170 FFSIARDIKQ 179 (217)
Q Consensus 170 ~~~l~~~~~~ 179 (217)
|++|.+.+..
T Consensus 153 ~~~l~~~i~~ 162 (164)
T 1r8s_A 153 LDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=3.8e-30 Score=186.70 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=123.9
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 87 (217)
+.......++|+|+|.+|+|||||+++|.+..+ ..+.++.+... ..+.+++ +.+.|||+||++.+...+..+++.
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 345556679999999999999999999999877 44445544333 4455566 799999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCC
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAK 161 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 161 (217)
+|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+... ...+++.... ...+++++++||+
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCC
Confidence 999999999999999999999888876542 246899999999998542 2333333332 1234689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARD 176 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~ 176 (217)
+|.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999998753
No 90
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7e-30 Score=187.96 Aligned_cols=155 Identities=19% Similarity=0.290 Sum_probs=120.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+++|++|+|||||+++|.+..+.. +.++.+.. ...+.+++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999877643 34444433 34566777 799999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCeE
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF 155 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 155 (217)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++..++.. .++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999988886542 34789999999999854 4556666666542 23589
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q 027918 156 FETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998754
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=188.62 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=124.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999987765 445554433 34455666 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (217)
+|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++..... ..+++++++||++|.|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 9999999999999999988887653 246899999999998642 23344433332 23568999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQR 180 (217)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (217)
+++|++|.+.+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 166 CQGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877443
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.9e-29 Score=184.49 Aligned_cols=155 Identities=22% Similarity=0.292 Sum_probs=125.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+|+|++|+|||||+++|.++.+.. +.++.+. ....+.+++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999887653 3444443 345666777 799999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEcC
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA 160 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 160 (217)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ....+++..+... .+++++++||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999988886542 24689999999999864 3445555555432 3468999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 027918 161 KTNLNVEQVFFSIARD 176 (217)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (217)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4.2e-30 Score=186.55 Aligned_cols=159 Identities=22% Similarity=0.383 Sum_probs=124.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+..++|+++|++|+|||||+++|.+..+. .+.++.+ .....+..++ +.+.+|||||++.++..+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987543 3344444 3344556665 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i 166 (217)
+|||+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 999999999999998888777543 22468999999999986532 222222221 123468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 166 QDGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.7e-30 Score=189.33 Aligned_cols=159 Identities=21% Similarity=0.395 Sum_probs=120.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (217)
....++|+|+|++|+|||||+++|.++.+.. +.++.+ +....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3566999999999999999999999877653 344444 4445556665 7999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-H----HHhCCeEEEEcCCCCCC
Q 027918 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-A----DEYGIKFFETSAKTNLN 165 (217)
Q Consensus 92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~~ 165 (217)
++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++... . ...+++++++||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 99999999999999999888876532 246899999999998552 122222211 1 12235799999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIK 178 (217)
Q Consensus 166 i~~l~~~l~~~~~ 178 (217)
++++|++|.+.+.
T Consensus 178 i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 178 LYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5.8e-30 Score=188.07 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=121.5
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchh---hh
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT---TA 83 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~---~~ 83 (217)
...+.+..+||+|+|++|+|||||++++.+. +......+...........+. +..+.+.||||+|++.|.... ..
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 3455667899999999999999999988875 333222222222222233332 445799999999999987765 78
Q ss_pred cccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCccChHHHHHHHH----Hh
Q 027918 84 YYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVPTSKGQALAD----EY 151 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~------~~~~~~~~~~~~~~----~~ 151 (217)
+++.+|++|+|||++++ +++..+..|+..+.... .+.|+++|+||+|+..+ .+.+..+..+.++. ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 67777777777765443 37999999999998542 12344455667777 66
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 152 GIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
+++++++||++ .|++++|+.|++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78999999999 99999999998764
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.9e-28 Score=193.61 Aligned_cols=164 Identities=30% Similarity=0.604 Sum_probs=142.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999999888777666665444 456677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. .+.+..++...++...+. +++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999987 68888877655 7899999999998543 245677888899999987 999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~ 178 (217)
|++|.|++++|++|.+.+.
T Consensus 311 a~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998775
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.6e-29 Score=182.31 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=123.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.++.+ ..+.++.+. ....+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998766 334444443 334455665 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i 166 (217)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++...... .+++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 9999999999999999888876543 347899999999998652 233333333221 2357999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQR 180 (217)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (217)
+++|++|.+.+.++
T Consensus 168 ~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 168 TEGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.1e-30 Score=186.55 Aligned_cols=163 Identities=24% Similarity=0.431 Sum_probs=120.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEE---CCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (217)
.+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+|||+|++.+..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 455556677776666555443 234578999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCe----EEEEcCC
Q 027918 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK 161 (217)
Q Consensus 90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 161 (217)
++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+. .... .+..+.++...+++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 578999999998876543 6899999999998542 2211 23345555556765 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q 027918 162 TNL-NVEQVFFSIARDIKQ 179 (217)
Q Consensus 162 ~~~-~i~~l~~~l~~~~~~ 179 (217)
+|. +++++++.|.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999998877654
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=9.7e-30 Score=185.67 Aligned_cols=160 Identities=19% Similarity=0.342 Sum_probs=126.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|++|+|||||+++|.++.+.. +.++.+ .....+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998877643 344444 3334455665 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i 166 (217)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999988887776543 2468999999999986531 12222221 1223468999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQR 180 (217)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (217)
+++|++|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 172 VEGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.1e-31 Score=196.88 Aligned_cols=163 Identities=32% Similarity=0.626 Sum_probs=135.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999998887766666654333 344556666688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 159 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 159 (217)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.. +.+..++...++...+. +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999887 78888776544 68999999999986532 14455667777888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~ 177 (217)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=3.9e-28 Score=175.25 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=121.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999888776666666666666677777 57889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEcCCCC
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN 163 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 163 (217)
+|+|++++....... .+......+.|+++|+||+|+... ..+......... + ++++++||++|
T Consensus 84 ~v~d~~~~~~~~~~~----~l~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE----AINHAKAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEETTCCCCHHHHH----HHHHHGGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEECCCCCcHHHHH----HHHHHHhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999998843222221 222222236899999999998652 222333322222 1 48999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 027918 164 LNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (217)
.|++++|++|.+.+...+
T Consensus 156 ~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhhhhhc
Confidence 999999999998876543
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4e-28 Score=173.49 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc--
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-- 86 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-- 86 (217)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555555555555556666666 689999999988775 23355554
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
+++++++|+|+++.+. ...|+..+... +.|+++|+||+|+... ..+.. +.+.++..++++++++||++|.|+
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS-LGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH-TTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc-cChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999988643 34576666553 6899999999998532 22222 356788888899999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 167 EQVFFSIARDI 177 (217)
Q Consensus 167 ~~l~~~l~~~~ 177 (217)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=2.5e-27 Score=177.96 Aligned_cols=166 Identities=23% Similarity=0.191 Sum_probs=119.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc------cc---cchhhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------RF---RTITTA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~~---~~~~~~ 83 (217)
+..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++ ..+.||||||.. .. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4569999999999999999999999877544444444455555555565 789999999983 21 112234
Q ss_pred cccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH---HHHHHHHHhC--CeEE
Q 027918 84 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKFF 156 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~~ 156 (217)
++..+|++++|||++++.++. ....|+..+.... .+.|+++|+||+|+.+. ..+..+ ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 567889999999999987754 2334555555432 26899999999998653 333332 4566677776 8999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 157 ETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
++||++|.|++++|++|.+.+.....
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876543
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2.8e-28 Score=181.30 Aligned_cols=161 Identities=17% Similarity=0.257 Sum_probs=112.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe-EEEEEEeeCCCcccccc-hhhhcccCCcE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG 90 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~ 90 (217)
...++|+|+|++|+|||||+++|.+..+...+.++ +.+... +.+++. .+.+.||||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 34689999999999999999999998877665543 333333 555532 47899999999999988 78889999999
Q ss_pred EEEEEeCCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCCCCCc-cChHHHHH-------------------
Q 027918 91 ILLVYDVTDES-SFNNIRN-WIRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSKGQA------------------- 146 (217)
Q Consensus 91 ~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~------------------- 146 (217)
+++|||+++.. ++..+.. |...+... ...+.|+++|+||+|+...... ...+.+..
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555555 44444332 2346899999999998653211 00111111
Q ss_pred -------------HHHHh---CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 027918 147 -------------LADEY---GIKFFETSAKTN------LNVEQVFFSIARD 176 (217)
Q Consensus 147 -------------~~~~~---~~~~~~~Sa~~~------~~i~~l~~~l~~~ 176 (217)
|+... +++|++|||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11111 568999999999 9999999999875
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.1e-29 Score=190.16 Aligned_cols=166 Identities=25% Similarity=0.358 Sum_probs=122.4
Q ss_pred CCCCCceeEEEEEcCC---------CCcHHHHHHHHHc---CCCCCCcccce-eeeEEEEE--------------EEECC
Q 027918 9 RADYDCLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IELDG 61 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~---------~~GKttli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~ 61 (217)
.......+||+|+|.+ |+|||||+++|.+ ..+...+.++. +.++.... ...++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3345667999999999 9999999999998 45555555543 22222111 11355
Q ss_pred eEEEEEEee-----------------------CCCcccccchhhhccc---------------------CCcEEEEEEeC
Q 027918 62 KRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVYDV 97 (217)
Q Consensus 62 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 97 (217)
..+.+.||| ++|++.|..++..+++ ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 668999999 6677777777777777 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCCHHHHHHHH
Q 027918 98 TDE--SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 98 ~~~--~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
+++ .+++.+..|+..+... ...+.|+++|+||+|+... +.+ ++.+.++.. .+++++++||++|.|++++|++|
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 998 8999999999988765 3346899999999998542 222 466677765 47899999999999999999999
Q ss_pred HHHH
Q 027918 174 ARDI 177 (217)
Q Consensus 174 ~~~~ 177 (217)
.+.+
T Consensus 250 ~~~l 253 (255)
T 3c5h_A 250 VQLI 253 (255)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=193.07 Aligned_cols=159 Identities=20% Similarity=0.393 Sum_probs=119.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.+..+... .+|.+ .....+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4568999999999999999999998876543 34433 4444555665 79999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (217)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence 9999999999999988777665433 3478999999999986532 2222222211 12357999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++|++|.+.+..
T Consensus 315 ~el~~~l~~~l~~ 327 (329)
T 3o47_A 315 YEGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987743
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4.4e-27 Score=183.94 Aligned_cols=160 Identities=22% Similarity=0.320 Sum_probs=124.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-----cchhhhcc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY 85 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~ 85 (217)
..+||+++|++|+|||||+++|+++... ..+.+|.+ .....+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3589999999999999999999987332 23344444 4444455544 379999999999988 67888899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCC-CCc----cChHHHHHHHHHhC---CeE
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDES-KRA----VPTSKGQALADEYG---IKF 155 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~ 155 (217)
+++|++|+|||++++++++.+..|...+.... ..+.|+++|+||+|+.+. .+. ...+++..++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999887765554432 346999999999998642 122 44577788888887 799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 027918 156 FETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
+++||++ .++.++|..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999998887654
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=173.20 Aligned_cols=157 Identities=22% Similarity=0.282 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC-----------cccccchhhhc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~ 84 (217)
++|+|+|++|+|||||+++|.+..+...+.++.+...... ... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999888776666655444333 333 689999999 56677777777
Q ss_pred ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918 85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153 (217)
Q Consensus 85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (217)
++. ++++++++++.+..++..+ ..|... + ......+.|+++|+||+|+.... .+..+.++..++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 777 7777777777777777666 456542 2 22222468999999999986532 5667788888876
Q ss_pred e-------EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 154 K-------FFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 154 ~-------~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
+ ++++||++|.|++++|++|.+.+.+...
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 7999999999999999999998866443
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=4e-27 Score=169.46 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 85 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 85 (217)
.++|+|+|++|+|||||+++|.+.... ....++.+.++....+.+++ ..+.+|||||...+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987643 33344555666667777887 46899999998653221 12357
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
+.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+.... ++...+.+++++||++|.|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence 8999999999999988765 346777777665557999999999998542111 1222457899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIK 178 (217)
Q Consensus 166 i~~l~~~l~~~~~ 178 (217)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987763
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=7.1e-27 Score=170.18 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=123.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc-
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 86 (217)
..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 458999999999999999999998766555566666677777777777 789999999988774 34555664
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... .... ...+.++...+++++++||++|.|
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 5999999999975 4555667766655 36899999999998532 1222 356778888899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQR 180 (217)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (217)
++++|++|.+.+...
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887543
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-26 Score=164.94 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------ccchhhhcccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 87 (217)
++|+|+|++|+|||||+++|.+..+. ....++.+.+.....+..++ ..+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987754 33344555566666677777 5889999999886 34456678899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 166 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 166 (217)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+. .++...++ ..++ +++++||++|.|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence 999999999988543322 112222222 26899999999998653 13333444 5666 8999999999999
Q ss_pred HHHHHHHHHHH
Q 027918 167 EQVFFSIARDI 177 (217)
Q Consensus 167 ~~l~~~l~~~~ 177 (217)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=3.5e-26 Score=190.00 Aligned_cols=162 Identities=22% Similarity=0.427 Sum_probs=125.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (217)
...++|+|+|.+|+|||||+++|.+..+.. +.+|.+ .....+..++ +.+.||||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc--eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999887543 344544 3444455555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV 166 (217)
Q Consensus 93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 166 (217)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+... ....+...... ..+++++++||++|.|+
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 9999999999999999888876543 247899999999998542 22222222211 12356999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 027918 167 EQVFFSIARDIKQRLA 182 (217)
Q Consensus 167 ~~l~~~l~~~~~~~~~ 182 (217)
+++|++|.+.+....+
T Consensus 472 ~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999987754433
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=4.9e-27 Score=172.00 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=108.4
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------ccccc
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR 78 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 78 (217)
+.+.+..++|+|+|.+|+|||||+++|.+..+.....++.+..........++ .+.+||||| ++.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG 93 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence 44456779999999999999999999998875443334333333333334444 699999999 66677
Q ss_pred chhhhcccCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHH-HHHHhC
Q 027918 79 TITTAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQA-LADEYG 152 (217)
Q Consensus 79 ~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~-~~~~~~ 152 (217)
..+..+++.+ |++++|+|++++.+..... ++..+.. .+.|+++|+||+|+... .... .+++.. +....+
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-HHHHHHHHHHHHHHcccCC
Confidence 7777777766 9999999999877665543 2222332 36899999999998652 2111 122222 222345
Q ss_pred CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 153 IKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
++++++||++|.|++++|++|.+.+
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCHHHHHHHHHHHh
Confidence 7999999999999999999998765
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=3e-26 Score=174.92 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=122.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch------hhhcc-
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY- 85 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~- 85 (217)
...++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++ ..+.||||||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999876655566667777666676666 78999999999877653 24555
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 86 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 86 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
..+|++++|+|+++.++. ..|...+... +.|+++|+||+|+... .... .....++..++++++++||++|.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 589999999999986543 3355555443 6899999999998532 2222 23677888899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIK 178 (217)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (217)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988653
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=8.4e-28 Score=186.81 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---hhhhcccCCcE
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ 90 (217)
||+++|+.|+|||||++++.++.... ...+|.+.++.. + + ..++++||||+|+++|+. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999988764432 245666655542 2 2 237999999999999974 46889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH----hCCeEEEE
Q 027918 91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET 158 (217)
Q Consensus 91 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 158 (217)
+|+|||++++ ++...+..|+..+.... .+.|+++|+||+|+..+. +.+..++.+++++. +++.|++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 33444444555554443 379999999999996532 34556667777775 57899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
||++ .++.++|..|++.+.++
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999998876544
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=4e-26 Score=166.90 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=112.0
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------ccccc
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR 78 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~ 78 (217)
+.+....++|+|+|++|+|||||+++|++..... ..++.+..........+. .+.+||||| ...+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 4445667899999999999999999999887432 222222222222333333 588999999 56667
Q ss_pred chhhhcccCC---cEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC
Q 027918 79 TITTAYYRGA---MGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG 152 (217)
Q Consensus 79 ~~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 152 (217)
.++..+++.+ +++++|+|+++..+.. .+..|+. .. +.|+++|+||+|+.+.. .....+.+..++...+
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777777665 9999999988754332 2333332 22 68999999999986422 2233344555555534
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 153 -IKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 153 -~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
++++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999999998774
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.4e-26 Score=175.18 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----------hhhhcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 85 (217)
.+|+|+|.+|+|||||+|+|.+........++.+.+.....+..++ ..+.||||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876666677777788888888887 5899999999887664 445566
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
..+|++++|+|+++.+....+..+ +.. .+.|+++|+||+|+.... . .......+...++++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHR-G-ISIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHT-T-CEECHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcC-C-cHHHHHHHHHHcCCCEEEEECCCC
Confidence 889999999999986554433332 322 378999999999975321 1 112345577888999999999999
Q ss_pred CCHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARD 176 (217)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (217)
.|++++|++|.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999775
No 118
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=5.1e-25 Score=172.24 Aligned_cols=160 Identities=17% Similarity=0.095 Sum_probs=125.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccccc----------ch
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR----------TI 80 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~----------~~ 80 (217)
...-.|+|+|.+|+|||||+|+|++..+.. ...+..+..........+ + ..+.||||||+.... ..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHH
Confidence 445689999999999999999999988763 333334444444444555 5 789999999986543 45
Q ss_pred hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEE
Q 027918 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFET 158 (217)
Q Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (217)
+..+++.+|++++|+|++++.+..+...|+..+... +.|+++|+||+|+.. ......+....+....+ .+++++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEE
Confidence 667889999999999999988888877777777663 689999999999863 23445566677777765 789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (217)
||++|.|++++|++|.+.+.
T Consensus 162 SA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP 181 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999988774
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.9e-26 Score=193.02 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=123.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEE------EEE--CCeEEEEEEeeCCCcccccchhhh
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITTA 83 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (217)
....+||+++|.+|+|||||+++|.+..+...+.++.+.++.... +.+ ++..+.+.+||+||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 466799999999999999999999999888777787776666442 112 223478999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 163 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (217)
+++.+|++|+|+|+++. +.+..|+..+..+.. +.|+++|+||+|+.. ...+..+..+.++...+.+++++||++|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 99999999999999765 556778888887764 589999999999965 4556677788888888899999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDIKQR 180 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (217)
.|++++++.|.+.+...
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999887543
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=5.8e-26 Score=174.32 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=115.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc-
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~- 86 (217)
+.++|+++|.+|+|||||+|+|.+........++.+.+.....+ +. ...+.+|||||...+. ..+..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35899999999999999999999876544445555554443333 33 3689999999998775 34556665
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
.+|++++|+|+++.+.. ..|...+... +.|+++|+||+|+... .... .....++..++++++++||++|.|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET---GIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999886543 4455555542 6899999999998532 1222 345678888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDI 177 (217)
Q Consensus 166 i~~l~~~l~~~~ 177 (217)
++++|++|.+.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999997754
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=4.1e-25 Score=170.01 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=122.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--c
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~ 86 (217)
.++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||...+.. .+..++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999999877666677777788777788877 5799999999887765 455565 6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (217)
.+|++++|+|+++.+ ....|...+.... ..|+++|+||+|+... ..... ....+...++++++++||++|.|+
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~-~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKK-KGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHH-HTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcc-cccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 899999999998753 2333444444431 2899999999997431 11121 266778888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 167 EQVFFSIARDIKQ 179 (217)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (217)
+++++.|.+.+..
T Consensus 154 ~~l~~~i~~~~~~ 166 (271)
T 3k53_A 154 EELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=8.2e-26 Score=174.02 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=117.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----------hhhhc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAY 84 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 84 (217)
.++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+...+ ..+.+|||||...+.. .+..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999876666677777777777777766 4788999999887662 12333
Q ss_pred c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
+ ..+|++++|+|+++.+.... |...+... +.|+++|+||+|+.... . .......+...++++++++||++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTSCEEECCCGG
T ss_pred HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCCCEEEEEcCC
Confidence 3 68999999999988654433 34444443 68999999999985321 1 12234667788899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDI 177 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (217)
|.|+++++++|.+.+
T Consensus 153 g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 153 GRGIEALKLAIDRYK 167 (274)
T ss_dssp GHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887654
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=2.9e-25 Score=165.94 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=109.5
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeeEEEEEEE-ECCeEEEEEEeeCCCc----------cc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIE-LDGKRIKLQIWDTAGQ----------ER 76 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~----------~~ 76 (217)
......++|+|+|.+|+|||||+++|++... .....++.+.+.....+. .++ ..+.||||||. +.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE--PVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS--CSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC--CcEEEEcCCCCCcccCChhhHHH
Confidence 3445678999999999999999999998762 233333334343333333 223 68999999994 33
Q ss_pred ccchhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHH--
Q 027918 77 FRTITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADE-- 150 (217)
Q Consensus 77 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~-- 150 (217)
+...+..+++. +|++++|+|++++.+. ....|+..+.. .+.|+++|+||+|+...... ...+........
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 44555566655 7889999999875432 22334444444 36899999999998542110 011222222222
Q ss_pred -----hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 151 -----YGIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
...+++++||++|.|++++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 446899999999999999999999887544
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=4.6e-24 Score=175.12 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=100.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 85 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 85 (217)
.++|+|+|.+|+|||||+|+|.+... .....++++.+.....+.+++ ..+.||||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 48999999999999999999998754 345566666777777778888 689999999987765433 3477
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
+.+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+..... . ..+.+......+++++||++|.|
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCCCC
Confidence 89999999999999877654434333333332 689999999999865321 1 22334443347899999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIK 178 (217)
Q Consensus 166 i~~l~~~l~~~~~ 178 (217)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=1.9e-24 Score=176.68 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=114.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc----------ccccchh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT 81 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~ 81 (217)
+..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++ ..+.||||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 46799999999999999999999987654 44455566666666677777 46999999997 3343333
Q ss_pred h-hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHH----HhCCeE
Q 027918 82 T-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALAD----EYGIKF 155 (217)
Q Consensus 82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 155 (217)
. .+++.+|++++|+|++++.+..+. .|+..+... +.|+++|+||+|+.+.. ....++. +.+.. ..++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCCCCCE
Confidence 2 477889999999999998877665 466666543 68999999999986532 2222222 22222 235799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 156 FETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
+++||++|.|++++|+.+.+.+...
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.1e-23 Score=166.41 Aligned_cols=162 Identities=16% Similarity=0.176 Sum_probs=122.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc---------chhhh
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTA 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 83 (217)
...++|+++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998765433333444445555555555 689999999975432 11223
Q ss_pred cccCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918 84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (217)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.... ..++...++...+++++++||+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence 445799999999998876 67777888888877654 68999999999985421 1244555666778899999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (217)
+|+|+++++++|.+.+...
T Consensus 319 ~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999888654
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.9e-25 Score=164.73 Aligned_cols=144 Identities=17% Similarity=0.266 Sum_probs=105.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC-
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 87 (217)
....++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ....+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3556899999999999999999999987654 2333333222 22689999999999999888888877
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHHHHhCC
Q 027918 88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYGI 153 (217)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~pvivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~ 153 (217)
+|++|+|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.... ... .+++..++...+.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888888888888777654 33579999999999996532 222 3456667777778
Q ss_pred eEEEEcCCCCCC
Q 027918 154 KFFETSAKTNLN 165 (217)
Q Consensus 154 ~~~~~Sa~~~~~ 165 (217)
.++++|+++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998764
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=1.3e-23 Score=172.56 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=118.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------cccccch
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~ 80 (217)
.+..++|+++|.+|+|||||+++|.+... .....++.+.+.....+..++ ..+.|||||| ++.|...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence 45679999999999999999999997652 334455555555555666777 4899999999 5666555
Q ss_pred hh-hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCe
Q 027918 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIK 154 (217)
Q Consensus 81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 154 (217)
.. .+++.+|++++|+|++++-+ +....|...+.. .+.|+++|+||+|+.+. .....++..+.+... +++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence 44 37789999999999987543 223345555544 36899999999998652 334445555555544 479
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 155 FFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
++++||++|.|++++|++|.+.+.....
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988766543
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=2e-23 Score=162.49 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYY 85 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 85 (217)
..+|+|+|.+|+|||||+|+|++..+.. +..+.++.......+..++ .++.||||||... +......++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4679999999999999999999987753 2333333333223334444 7899999999775 344556788
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-C-CeEEEEcCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-G-IKFFETSAKT 162 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 162 (217)
+.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+...... .......+ . .+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCCC
Confidence 9999999999998764433 2343 4444432 36899999999998542110 22223322 2 5789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDI 177 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (217)
|.|++++++.|.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999988765
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=6.8e-24 Score=167.40 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhhcc---cCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---RGA 88 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~ 88 (217)
.+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.||||||... +..+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987543222233333333444555532 4799999999643 333444444 459
Q ss_pred cEEEEEEeCCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCC
Q 027918 89 MGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK 161 (217)
Q Consensus 89 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 161 (217)
+++|+|+|+++ +++++.+..|+..+..+.. .+.|+++|+||+|+... .+..+.+...+. .+++++||+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence 99999999998 7889999999999987653 36899999999998541 234566666666 689999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIK 178 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (217)
++.|+++++++|.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 313 TREGLRELLFEVANQLE 329 (342)
T ss_dssp CSSTTHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999998874
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.1e-23 Score=171.40 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc-cccc--------hhhhcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAYY 85 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~~ 85 (217)
++|+|+|.+|+|||||+|+|.+.... ....++++.++....+.+++ ..+.||||||.. .+.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 89999999999999999999987643 44556666677667777887 679999999987 5432 234578
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (217)
+.+|++++|+|++++.++++.. ++..+ .+.|+++|+||+|+... ...+++..++. .+.+++++||++|.|
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 8999999999999887766543 22332 26899999999999642 23344444332 336899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIKQR 180 (217)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (217)
+++++++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999976643
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.9e-24 Score=174.75 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=116.4
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-------hh
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TT 82 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~ 82 (217)
+....++|+|+|..|+|||||+++|++..+. ....++.+.+.....+...+. ..+.||||||+..+..+ +.
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456789999999999999999999988763 344555566666677777654 38999999999877654 34
Q ss_pred hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
.++..+|++++|+|+... .....|+..+... +.|+++|+||+|+...... +..+.++..++++++++||++
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCC
Confidence 578899999999999333 3345577666665 6899999999998653322 556667777789999999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 027918 163 NLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 163 ~~~i~~l~~~l~~~~~~ 179 (217)
|.|++++|++|.+.+.+
T Consensus 180 g~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTSTTTHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999988743
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=5.9e-23 Score=167.97 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccchhhhcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY 85 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~ 85 (217)
.+|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999987654 34566666677777778887 5789999999664 234566788
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHhCC-eEEEEcCC
Q 027918 86 RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAK 161 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~ 161 (217)
+.+|++++|+|+.++.+..+ +..|+ ... +.|+++|+||+|+... . .... .++. ..+. +++++||+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 99999999999987654332 33333 222 6899999999997421 1 1222 3443 4565 78999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (217)
+|.|+++++++|.+.+.+.
T Consensus 149 ~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 9999999999999888643
No 134
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=3e-22 Score=159.43 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccchhhhccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYR 86 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~ 86 (217)
..|+|+|++|+|||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|... +...+ ..+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 3499999999999999999999876544445555566667778887 5789999999622 22222 3578
Q ss_pred CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEcCC
Q 027918 87 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAK 161 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~ 161 (217)
.+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+...........+..++... +.+++++||+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~ 336 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL 336 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 899999999998876 55666666666666544568999999999985422100112233344554 2478999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (217)
+|.|+++++++|.+.+...
T Consensus 337 ~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 337 KRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhccc
Confidence 9999999999998877554
No 135
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=9.1e-23 Score=161.53 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=102.5
Q ss_pred EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCC
Q 027918 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDN 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~ 120 (217)
+....+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..++.....|+..+.... ..+
T Consensus 183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 3345556665 899999999999999999999999999999999998 456888888888776532 246
Q ss_pred CcEEEEEeCCCCCCCC--------------CccChHHHHHHHH-----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 121 VNKVLVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 121 ~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
.|+++|+||+|+.... .....+++..++. ..++.+++|||+++.|++++|+++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 9999999999984211 1356677777776 24578999999999999999999999
Q ss_pred HHHHH
Q 027918 176 DIKQR 180 (217)
Q Consensus 176 ~~~~~ 180 (217)
.+...
T Consensus 341 ~i~~~ 345 (353)
T 1cip_A 341 VIIKN 345 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 136
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=1.4e-22 Score=165.48 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=109.3
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEE
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIE 58 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 58 (217)
......++|+++|.+++|||||+++|++... .....++.+.+.....+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3445679999999999999999999965311 112224556666656666
Q ss_pred ECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (217)
Q Consensus 59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~ 134 (217)
.++ ..+.||||||++.|...+...++.+|++++|+|+++... ++...++...+......+.| +++|+||+|+..
T Consensus 92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 555 689999999999999988899999999999999988532 11111122222211122566 899999999853
Q ss_pred CCC-----ccChHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q 027918 135 SKR-----AVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 135 ~~~-----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 171 (217)
... ....++...++...+ ++++++||++|.|++++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 112233444554444 5799999999999999765
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2e-22 Score=166.22 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=111.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCC-------CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 86 (217)
..++|+++|..++|||||+++|.+.. ......++.+.+.....+..++ ..+.||||||++.|...+...+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 46899999999999999999999866 2233344444454444555666 68999999999999888888999
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHh----CCeEEEE
Q 027918 87 GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEY----GIKFFET 158 (217)
Q Consensus 87 ~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~~ 158 (217)
.+|++++|+|+++ +.+.+.+. .+... +.|+++|+||+|+.+.. .....+++..++... +++++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999987 34433332 23332 68889999999986421 111234455555544 5789999
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 027918 159 SAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (217)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999998775
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=5.6e-22 Score=160.48 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=114.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEE---------EEE-------EE---CCeEEEEEEeeCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------RTI-------EL---DGKRIKLQIWDTA 72 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~---------~~~-------~~---~~~~~~~~l~Dt~ 72 (217)
....++|+++|.+++|||||+++|.+........... ..... ... .. ......+.|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 4566899999999999999999999854332110000 00000 000 00 1122689999999
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHh
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEY 151 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 151 (217)
|++.|...+...+..+|++++|+|++++.+......|+..+.... ..|+++|+||+|+.+.... ...+++..+....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998766666777776666553 2589999999998652111 1112223333222
Q ss_pred ---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 152 ---GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 152 ---~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 478999999999999999999987653
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=2.9e-22 Score=168.17 Aligned_cols=159 Identities=26% Similarity=0.319 Sum_probs=111.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC--CCC-----C--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-----S--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~~-----~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 74 (217)
++..+|+|+|..++|||||+++|+... +.. . ...+.++......+.+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 456899999999999999999998621 110 0 0111222222222322 455689999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 153 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (217)
..|...+...++.+|++|+|+|++++........|...+.. ++|+++|+||+|+.+.. .......+...++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence 99999999999999999999999988777777777655532 68999999999986532 23334556666665
Q ss_pred --eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 154 --KFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.++++||++|.|+++++++|.+.+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999988764
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=149.35 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=109.6
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc--ceeeeEEEEEEEECCeEEEEEEeeCCCcc-----------c
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------R 76 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~ 76 (217)
......++|+|+|.+|+|||||+|+|++..+.....+ +.+.......+.+++ ..+.||||||.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3445679999999999999999999999877655444 455566666677777 589999999943 3
Q ss_pred ccchhhhcccCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHH
Q 027918 77 FRTITTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------TSKGQALA 148 (217)
Q Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~------~~~~~~~~ 148 (217)
+...+..+++.+|++++|+|+++... ...+..+...+.... ..|+++|+||+|+.... .+. .+.++.++
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC-------------CHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHH
Confidence 44445556678999999999875433 222222222222211 35999999999975422 111 24677888
Q ss_pred HHhCCeEEEEcCCCC-----CCHHHHHHHHHHHHHH
Q 027918 149 DEYGIKFFETSAKTN-----LNVEQVFFSIARDIKQ 179 (217)
Q Consensus 149 ~~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~ 179 (217)
...+..++.++...+ .++.++|+.+...+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 888888888887754 5788888887776644
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=6.4e-22 Score=165.86 Aligned_cols=159 Identities=20% Similarity=0.295 Sum_probs=114.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCC-----C--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----S--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~-----~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~ 74 (217)
++..+|+|+|..++|||||+++|+.. .+.. . ...+.++......+.+ ++..+.++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 56789999999999999999999762 1110 0 0111111111122222 455689999999999
Q ss_pred ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI- 153 (217)
Q Consensus 75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 153 (217)
..|...+...++.+|++|+|+|++++........|..... .++|+++|+||+|+.... ......++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence 9999988899999999999999999877777777765543 268999999999986532 22334455555565
Q ss_pred --eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 154 --KFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 154 --~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999988764
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.3e-21 Score=158.62 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=103.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceee--eEEEEEEEE-------------C--C----eEEEEEE
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGI--DFKIRTIEL-------------D--G----KRIKLQI 68 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~l 68 (217)
...++|+++|..++|||||+++|.+.. +.....+..+. .+....+.. + + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 356999999999999999999998543 22333342233 232222211 1 1 1368999
Q ss_pred eeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHH
Q 027918 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSK 143 (217)
Q Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~ 143 (217)
|||||++.|...+...+..+|++|+|+|++++ ++.+.+.. +.... ..|+++|+||+|+.+.... ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999999988888888899999999999853 44444332 22221 2589999999999654322 23455
Q ss_pred HHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 144 GQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 144 ~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+..++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6666654 2578999999999999999999887653
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=8.2e-23 Score=167.14 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=104.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~ 84 (217)
..++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.||||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3479999999999999999999986543 34445555556555667777 678999999986654332 336
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 164 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (217)
+..+|++++|+|++++.+... ..|+..+. ..|+++|+||+|+..... .. ..+.+. ...+++++||++|.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~-~~--~~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL-IT--SLEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG-ST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh-hH--HHHHhc--cCCcEEEEECCCCC
Confidence 789999999999998766543 34444442 369999999999865321 11 111111 34689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIKQ 179 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (217)
|+++++++|.+.+..
T Consensus 370 Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 370 GIDSLETAILEIVQT 384 (462)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987753
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.3e-22 Score=152.22 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=108.0
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccc-eeeeEEEEEEEECCeEEEEEEeeCCCcccccch---------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------- 80 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 80 (217)
....++|+|+|.+|+|||||+++|++.. +.....++ .+.......+..++ ..+.||||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3456899999999999999999999876 33333333 44455555566676 68999999998665322
Q ss_pred --hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe-CCCCCCCCCccCh-------HHHHHHH
Q 027918 81 --TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGN-KADMDESKRAVPT-------SKGQALA 148 (217)
Q Consensus 81 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~n-K~Dl~~~~~~~~~-------~~~~~~~ 148 (217)
...+++.+|++++|+|+++.... ...++..+...... ..|+++|+| |+|+... .... ..+..+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHH
Confidence 22367889999999999862221 11222333333221 346666666 9998642 1111 2344455
Q ss_pred HHhCCe---E--EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 149 DEYGIK---F--FETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 149 ~~~~~~---~--~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
...+.. + +++||++|.|++++|++|.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 655532 2 7899999999999999999988654
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.8e-21 Score=147.59 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=108.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccc--eeeeEEEEEEEECCeEEEEEEeeCCCc--------ccccchh
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFRTIT 81 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------~~~~~~~ 81 (217)
....++|+|+|.+|+|||||+|+|++.........+ .+.......+..++ ..+.||||||. ..+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 356799999999999999999999988765433222 33444445566666 68999999996 3333323
Q ss_pred hhcc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCc-----cChHHHHHHHH
Q 027918 82 TAYY----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRA-----VPTSKGQALAD 149 (217)
Q Consensus 82 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~-----~~~~~~~~~~~ 149 (217)
..++ +.+|++++|+|+++... ....++..+..... .+.|+++|+||.|+.+.... ...+.++.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 3333 89999999999975321 12223333433322 25799999999998652211 11244677778
Q ss_pred HhCCeEEEEcCCC-----CCCHHHHHHHHHHHHHHH
Q 027918 150 EYGIKFFETSAKT-----NLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 150 ~~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~~ 180 (217)
..+..++.++... +.|+++|++.|.+.+.+.
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8888787777665 478999999988877653
No 146
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.87 E-value=5.8e-22 Score=157.44 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=94.4
Q ss_pred EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh-cCCCC
Q 027918 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQH-ASDNV 121 (217)
Q Consensus 53 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~ 121 (217)
....+.+++ +.+.+|||+|++.++..|..++++++++|||||+++ ..++.....|+..+... ...+.
T Consensus 192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 334555665 899999999999999999999999999999999999 67888888888888654 23469
Q ss_pred cEEEEEeCCCCCCCC---------------CccChHHHHHHHH-----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 122 NKVLVGNKADMDESK---------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 122 pvivv~nK~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|+|+|+||+|+.... .....+++..++. ...+.+++|||+++.|++++|+++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999984211 1245666666652 34578999999999999999999999
Q ss_pred HHHHHh
Q 027918 176 DIKQRL 181 (217)
Q Consensus 176 ~~~~~~ 181 (217)
.+....
T Consensus 350 ~i~~~~ 355 (362)
T 1zcb_A 350 TILHDN 355 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=8.3e-22 Score=159.87 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=111.3
Q ss_pred CCCCCceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeee--EEEEEEEE-------------C--C----eEE
Q 027918 9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGID--FKIRTIEL-------------D--G----KRI 64 (217)
Q Consensus 9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~ 64 (217)
+......++|+++|..++|||||+++|.+.. +.....+..+++ +....+.. . + ...
T Consensus 4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 83 (410)
T 1kk1_A 4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR 83 (410)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence 3445677999999999999999999998543 233333433332 22222211 0 1 126
Q ss_pred EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-cc
Q 027918 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AV 139 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~ 139 (217)
.+.||||||++.|.......+..+|++|+|+|+++. ++.+.+.. +.... ..|+++|+||+|+.+... ..
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHH
Confidence 899999999999888777788899999999999853 34444332 22222 257999999999865221 11
Q ss_pred ChHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 140 PTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 140 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
..+++..++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22344455443 3579999999999999999999887653
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=3e-24 Score=177.82 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=116.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
..++|+|+|.+++|||||+++|.+..+.....++.+.++....+..++. ..++||||||++.|..++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4579999999999999999999886655445555555554444444221 379999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh--CCeEEEEcCCCCCCHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~ 168 (217)
|+|+++.........| ......+.|+++|+||+|+.+............+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 9999986554433322 2222347899999999998654333333333222 1112 25899999999999999
Q ss_pred HHHHHHHHHH
Q 027918 169 VFFSIARDIK 178 (217)
Q Consensus 169 l~~~l~~~~~ 178 (217)
++++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 149
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=7.4e-22 Score=154.23 Aligned_cols=127 Identities=19% Similarity=0.206 Sum_probs=100.0
Q ss_pred EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027918 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~ 120 (217)
+....+..++ +.+.+||++|++.++..|.+++++++++|+|||++ +..++.....|+..+.... ..+
T Consensus 157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~ 234 (327)
T 3ohm_A 157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN 234 (327)
T ss_dssp EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence 4445566666 89999999999999999999999999999999765 5566777777777775432 247
Q ss_pred CcEEEEEeCCCCCCCC---------------CccChHHHHHHHH----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 121 VNKVLVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 121 ~pvivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
.|+++++||+|+.... ...+.+++..|+. ..++.+++|||+++.|++++|..+.+
T Consensus 235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 9999999999984311 1356677777743 34577899999999999999999999
Q ss_pred HHHHH
Q 027918 176 DIKQR 180 (217)
Q Consensus 176 ~~~~~ 180 (217)
.+...
T Consensus 315 ~Il~~ 319 (327)
T 3ohm_A 315 TILQL 319 (327)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88764
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.5e-21 Score=158.30 Aligned_cols=161 Identities=21% Similarity=0.153 Sum_probs=107.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-----------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 80 (217)
+..++|+|+|++|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence 45699999999999999999999987642 33344555555556677787 47899999997433221
Q ss_pred -hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHH----HhCCe
Q 027918 81 -TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIK 154 (217)
Q Consensus 81 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~ 154 (217)
...++..+|++++++|+.++.+..+. .+...+.. .+.|+++|+||+|+.+. .....++.. .+.. ..+.+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCc
Confidence 12356789999999999876655442 23333333 26899999999998652 222222222 2222 23478
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 155 FFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
++++||++|.|++++|+.+.+.+...
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998877654
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=9.9e-23 Score=166.48 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR 86 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~ 86 (217)
++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.||||||.. .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987654 33345555555555555555 579999999985 56667778899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCC
Q 027918 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN 165 (217)
Q Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (217)
.+|++++|+|+.++.+..+ .|+..+.+ ..+.|+++|+||+|+...... ..++. ..+. .++++||++|.|
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 9999999999988765443 23322222 236899999999998542211 11122 3454 789999999999
Q ss_pred HHHHHHHHHHHHH
Q 027918 166 VEQVFFSIARDIK 178 (217)
Q Consensus 166 i~~l~~~l~~~~~ 178 (217)
+++++++|.+.+.
T Consensus 152 v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 152 LGDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHHTGG
T ss_pred hHHHHHHHHHhcC
Confidence 9999999988764
No 152
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=5.3e-22 Score=157.08 Aligned_cols=120 Identities=14% Similarity=0.215 Sum_probs=93.0
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKA 130 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~ 130 (217)
..+.+.+|||+|++.++..|..++++++++|+|||++ +..+++....|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7788999888888886542 2468999999999
Q ss_pred CCCCCCC--------------------ccChHHHHHHHHH----------------hCCeEEEEcCCCCCCHHHHHHHHH
Q 027918 131 DMDESKR--------------------AVPTSKGQALADE----------------YGIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 131 Dl~~~~~--------------------~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
|+..... ....+++..++.. ..+.+++|||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843110 0113555555432 123568999999999999999999
Q ss_pred HHHHHHh
Q 027918 175 RDIKQRL 181 (217)
Q Consensus 175 ~~~~~~~ 181 (217)
+.+....
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886543
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.87 E-value=2e-21 Score=151.35 Aligned_cols=156 Identities=18% Similarity=0.140 Sum_probs=107.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhhc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAY 84 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 84 (217)
..+|+|+|.+|+|||||+|+|++..+.. +..+..+.......+..++ ..+.+|||||.. .+......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3589999999999999999999976542 2222222222223344455 689999999986 233445667
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 163 (217)
Q Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (217)
++.+|++++|+|+++ - .....|+..... ..+.|+++|+||+|+.. ......+.+..+....++ .++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 889999999999976 2 222233322221 23689999999999854 122233445555555665 7999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 027918 164 LNVEQVFFSIARDIK 178 (217)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (217)
.|++++++.|...+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999887653
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=2.1e-22 Score=155.08 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=92.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCC-Cc-------ccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------cc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FR 78 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~ 78 (217)
..++|+|+|.+|+|||||+|+|++..... .+ .++.+.+.....+..++..+.+.||||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46999999999999999999988765443 22 45556666656665566667999999999732 22
Q ss_pred chh-------hhccc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-
Q 027918 79 TIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR- 137 (217)
Q Consensus 79 ~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~- 137 (217)
.+. ..++. .+|+++++++.........-..++..+.. +.|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHH
Confidence 221 22222 37789999877652211222234444433 689999999999743111
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
....+.+.......+++++.+|+.++.|+++++++|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1112334455556789999999999999999999887755
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.4e-21 Score=158.21 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=105.9
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCCC---CCC---------cc---------------------cceeeeEEEEEE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTS---------FI---------------------TTIGIDFKIRTI 57 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~---~~~---------~~---------------------~~~~~~~~~~~~ 57 (217)
.....++|+++|.+++|||||+++|++... ... .. .+.+++.....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 335679999999999999999999986431 100 00 112223233333
Q ss_pred EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..++ ..+.||||||++.|...+..++..+|++|+|+|++++... ....++..+.... ..|+++|+||+|+.+...
T Consensus 100 ~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 100 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCH
T ss_pred ecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccH
Confidence 4444 6899999999999988888889999999999999886432 2333444443331 236899999999865211
Q ss_pred c---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918 138 A---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~ 170 (217)
. ...++...++...+ ++++++||++|.|+++++
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 1 12344556666666 689999999999999854
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=5.5e-21 Score=157.94 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=99.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 61 (217)
...+||+++|.+++|||||+++|++.... ....++.+.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35699999999999999999999764111 11122334444444444444
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
..+.||||||++.|...+..+++.+|++|+|+|++++.+... ....+..+... . ..|+|+|+||+|+.+.
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTT
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccc
Confidence 689999999999999999999999999999999998654321 12222222222 1 2569999999998652
Q ss_pred CCccCh----HHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q 027918 136 KRAVPT----SKGQALADEY-----GIKFFETSAKTNLNVEQ 168 (217)
Q Consensus 136 ~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 168 (217)
..... +++..+.... +++++++||++|.|+++
T Consensus 187 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 -SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222 2233333333 36899999999999985
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=2.6e-21 Score=160.76 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=86.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC------------------CCC----CcccceeeeEEEEEEEECCeEEEEEEee
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS------------------FTT----SFITTIGIDFKIRTIELDGKRIKLQIWD 70 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D 70 (217)
+...+|+|+|.+|+|||||+++|+... ... ....+.+.......+...+ ..++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 456899999999999999999996211 000 0012233334445555666 7899999
Q ss_pred CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
|||+..|...+..+++.+|++|+|+|++++........|. .+.. .++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999999876666555543 3333 2689999999999854
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-21 Score=143.10 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=87.3
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC-
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~- 87 (217)
....++|+|+|++|+|||||+++|.+..+.. ...++.+.+ +. .+.+.+|||||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YD--GSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CC--CTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ec--CCeEEEEECCCCchHHHHHHHHHHhh
Confidence 3567899999999999999999999887544 222222211 12 2689999999999988888777766
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027918 88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~pvivv~nK~Dl~~ 134 (217)
+|++++|||++ +.+++..+..|+..+... ...+.|+++|+||+|+..
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 888999888888777554 234799999999999865
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=2.5e-22 Score=163.98 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=104.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCc-----------------------------ccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSF-----------------------------ITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|.+++|||||+++|++. .+.... ..+.+++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999864 232110 12233344333444444
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCC-CcEEEEEeCCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDN-VNKVLVGNKADMDESK 136 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~-~pvivv~nK~Dl~~~~ 136 (217)
..+.||||||++.|...+..+++.+|++|+|+|+++ .+++....|......+. ..+ .|+++|+||+|+.+..
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 689999999999999989999999999999999998 56664433222221111 113 4689999999986521
Q ss_pred C-----ccChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHHH
Q 027918 137 R-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF 171 (217)
Q Consensus 137 ~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 171 (217)
. ....+++..++...+ ++++++||++|.|+.++++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 122345666666665 6899999999999986543
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.9e-21 Score=155.21 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=107.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC-------CCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG-------SFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (217)
..++|+++|.+++|||||+++|.+. .+.. ......+++.....+..++ ..+.||||||++.|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHH
Confidence 3589999999999999999999873 1110 0122233333333333333 68999999999999
Q ss_pred cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC--
Q 027918 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG-- 152 (217)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-- 152 (217)
.......++.+|++|+|+|+++.........| ..+... ++| +++|+||+|+.++.. ....+++..++...+
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888899999999999999985443333333 333332 578 689999999864211 112245556666655
Q ss_pred ---CeEEEEcCCCCCC----------HHHHHHHHHHHH
Q 027918 153 ---IKFFETSAKTNLN----------VEQVFFSIARDI 177 (217)
Q Consensus 153 ---~~~~~~Sa~~~~~----------i~~l~~~l~~~~ 177 (217)
++++++||++|.| +.++++.|.+.+
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999998764 777777776654
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=2.3e-21 Score=157.04 Aligned_cols=147 Identities=19% Similarity=0.137 Sum_probs=103.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--------CCCCC---------cccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
...++|+++|.+++|||||+++|.+. .+... ...+.+.+.....+..++ ..+.||||||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChH
Confidence 45689999999999999999999873 11111 122333344333344343 689999999999
Q ss_pred cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027918 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG 152 (217)
Q Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (217)
.|.......++.+|++|+|+|++++... ....|+..+... +.| +++|+||+|+.++.. ....+++..++...+
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9988888899999999999999886543 334555555443 577 889999999864211 111234555666654
Q ss_pred -----CeEEEEcCCCCCC
Q 027918 153 -----IKFFETSAKTNLN 165 (217)
Q Consensus 153 -----~~~~~~Sa~~~~~ 165 (217)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999876
No 162
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=6.4e-22 Score=157.73 Aligned_cols=164 Identities=22% Similarity=0.301 Sum_probs=88.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc--------ccceeeeEEEEEEEECCeEEEEEEeeCCCc-------cc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 76 (217)
...++|+|+|++|+|||||+++|++.... ..+ .++.+.......+..++..+.+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 34589999999999999999998765332 222 134444444444445666679999999998 55
Q ss_pred ccchhh-------hcccCCc-----------EEEEEEeCCC-hhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 77 FRTITT-------AYYRGAM-----------GILLVYDVTD-ESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 77 ~~~~~~-------~~~~~~d-----------~~i~v~d~~~-~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
+..++. .+++.++ +.+++|++++ ..++..+. .|+..+ ..+.|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL- 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH-
Confidence 655554 4444332 2234444443 33343333 243333 246899999999998642
Q ss_pred CccCh--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918 137 RAVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182 (217)
Q Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (217)
..+.. +.+..++..++++++++||+++.+ ++.|.++.+.+....+
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 22222 456666677789999999999999 8889888888876554
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=5.4e-23 Score=169.01 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (217)
+.++|+++|.+++|||||+++|.+..+.....++.+.+.....+..++ ..++||||||++.|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457999999999999999999987655443333333333333344455 478999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH--HHHHHHHHhC--CeEEEEcCCCCCCHHH
Q 027918 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS--KGQALADEYG--IKFFETSAKTNLNVEQ 168 (217)
Q Consensus 94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 168 (217)
|+|++++........ +..+.. .+.|+++++||+|+.+.... +..+ ....++..++ ++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 999988422221222 222222 36899999999998643211 1110 0001112222 6899999999999999
Q ss_pred HHHHHHH
Q 027918 169 VFFSIAR 175 (217)
Q Consensus 169 l~~~l~~ 175 (217)
+|++|..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9999864
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=4.3e-21 Score=153.23 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=108.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 96 (217)
+|+++|.+++|||||+++|. ....+++.....+..++ ..+.||||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 23333444444444444 579999999999998877788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCccC--hHHHHHHHHHhC---CeEEE--EcCCC---CC
Q 027918 97 VTDESSFNNIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKRAVP--TSKGQALADEYG---IKFFE--TSAKT---NL 164 (217)
Q Consensus 97 ~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~ 164 (217)
+. ........++..+... +.|. ++++| |+|+ + ..... .++++.++...+ +++++ +||++ +.
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 53 3344455565555544 5677 88899 9998 4 21111 134455554433 68999 99999 99
Q ss_pred CHHHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIKQR 180 (217)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (217)
|++++++.|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999887643
No 165
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=3.8e-20 Score=145.09 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=98.0
Q ss_pred EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027918 52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN 120 (217)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~ 120 (217)
+....+.+++ +.+.+||++|++.++..|..++++++++|||||++ +..++.+...|+..+.... ..+
T Consensus 151 i~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~ 228 (340)
T 4fid_A 151 IHEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG 228 (340)
T ss_dssp CEEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred eEEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence 3344455555 89999999999999999999999999999999998 6778888888887776543 357
Q ss_pred CcEEEEEeCCCCCCC--------------CCccChHHHHHHHH-Hh--------------------------CCeEEEEc
Q 027918 121 VNKVLVGNKADMDES--------------KRAVPTSKGQALAD-EY--------------------------GIKFFETS 159 (217)
Q Consensus 121 ~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~~~~~~S 159 (217)
.|+++|+||+|+... ......+++..++. .. .+.++++|
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 999999999997431 01123445544432 22 36789999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 027918 160 AKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (217)
|+++.+++.+|..+.+.+..
T Consensus 309 A~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999887
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=5.2e-22 Score=163.27 Aligned_cols=156 Identities=17% Similarity=0.103 Sum_probs=92.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------CcccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|..++|||||+++|+.. .+.. ....+.+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 55689999999999999999999752 1110 0012223333333444454
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR 137 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~ 137 (217)
..+.||||||++.|...+...+..+|++|+|+|+++.. +|+...+|...+......++| +++|+||+|+.....
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 68999999999999988888899999999999999863 232222233333222223577 999999999854211
Q ss_pred -----ccChHHHHHHHHHh-------CCeEEEEcCCCCCCHHHHH
Q 027918 138 -----AVPTSKGQALADEY-------GIKFFETSAKTNLNVEQVF 170 (217)
Q Consensus 138 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~ 170 (217)
....++...++... +++++++||++|.|+++++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223455666555 3679999999999998765
No 167
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.84 E-value=2.4e-20 Score=149.33 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=98.3
Q ss_pred EEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 027918 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK 123 (217)
Q Consensus 55 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~pv 123 (217)
..+.+++ +.+.||||+|++.++..|..++++++++|||||+++ ..++.....|+..+.... ..+.|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4455665 899999999999999999999999999999999999 889999999999887653 357899
Q ss_pred EEEEeCCCCCCCCC--cc---------------------------ChHHHHHHH-----HH--------hCCeEEEEcCC
Q 027918 124 VLVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YGIKFFETSAK 161 (217)
Q Consensus 124 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~ 161 (217)
+||+||+|+..... .. ..+++..|+ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999843110 01 134455553 22 24567899999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 027918 162 TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (217)
++.||+++|.++.+.+...
T Consensus 368 d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=2.4e-20 Score=156.71 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeee--EEEEEEEE---------CC-----eEEEEEEeeCCCccccc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIEL---------DG-----KRIKLQIWDTAGQERFR 78 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~--~~~~~~~~---------~~-----~~~~~~l~Dt~G~~~~~ 78 (217)
.++|+|+|.+++|||||+++|.+..+........+.+ ........ ++ ....++||||||++.|.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4799999999999999999998754432111111111 11111100 00 01259999999999999
Q ss_pred chhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------Ch--
Q 027918 79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV------------PT-- 141 (217)
Q Consensus 79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~------------~~-- 141 (217)
.++...++.+|++|+|+|+++ +.+++.+.. +.. .+.|+++|+||+|+....... ..
T Consensus 85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 999999999999999999998 555544432 222 268999999999985421110 00
Q ss_pred -H-------HHHHHHHHh---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 142 -S-------KGQALADEY---------------GIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 142 -~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
+ +......+. .++++++||++|.|+++++++|...+...
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 0 011111111 13899999999999999999999877643
No 169
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.7e-21 Score=160.88 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=103.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-------------------------------ccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|.+|+|||||+++|++....... .++.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45689999999999999999999875332111 12334444444455554
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKR 137 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~-~pvivv~nK~Dl~~~~~ 137 (217)
..+.||||||++.|...+..+++.+|++|+|+|++++.. +.....+...+......+ .|+|+|+||+|+.+...
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 689999999999999989999999999999999987421 101112222222211223 45999999999865211
Q ss_pred c---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918 138 A---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 169 (217)
. ...+....++...+ ++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11233344444443 58999999999999876
No 170
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=2.3e-21 Score=159.23 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCC--------cccccchhhhcc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAYY 85 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~ 85 (217)
.++|+|+|.+|+|||||+|+|.+..+. ....++.+.+.....+...+ ..+.+||||| ++.+...+..++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 579999999999999999999987654 23344444444444444444 6899999999 667777788899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCC
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL 164 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (217)
+.+|++++|+|..+.-+.. ..|+..+.+. .+.|+++|+||+|+.... ....++. ..+ ..++++||++|.
T Consensus 101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPISGTHGL 170 (456)
T ss_dssp HHCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTCT
T ss_pred hhCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEeeccccc
Confidence 9999999999987643322 2333233222 378999999999985421 1111121 223 356799999999
Q ss_pred CHHHHHHHHHHHHH
Q 027918 165 NVEQVFFSIARDIK 178 (217)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (217)
|+.++++.+.+.+.
T Consensus 171 gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 171 GLGDLLDAVAEHFK 184 (456)
T ss_dssp THHHHHHHHHTTGG
T ss_pred chHHHHHHHHhhcc
Confidence 99999999887653
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=7.4e-22 Score=161.96 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=103.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----------------------------cccceeeeEEEEEEEECC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDG 61 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (217)
...++|+++|.+++|||||+++|++. .+... ...+.+++.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35689999999999999999999864 22110 012333333334444444
Q ss_pred eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (217)
Q Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~ 134 (217)
..+.||||||++.|.......+..+|++|+|+|+++.. +|+ ....++..+... +.| +++|+||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 68999999999999998889999999999999998753 221 222222222222 455 899999999863
Q ss_pred CCCc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918 135 SKRA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV 169 (217)
Q Consensus 135 ~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l 169 (217)
.... ...+++..++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1111 12334555666655 68999999999998754
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=9e-22 Score=165.72 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCCcccceeeeEEEEEEEE
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIEL 59 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (217)
.....++|+|+|.+++|||||+++|++.. ......++.+.+.....+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34567899999999999999999996421 01111334444444444444
Q ss_pred CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027918 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KVLVGNKADM 132 (217)
Q Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl 132 (217)
++ ..+.||||||+..|.......+..+|++|+|+|++++. .+ ......+..+... +.| +|+|+||+|+
T Consensus 253 ~~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl 327 (592)
T 3mca_A 253 DK--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDL 327 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGG
T ss_pred CC--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccc
Confidence 43 68999999999999988888999999999999998532 11 1111122222222 455 8999999998
Q ss_pred CCCCCcc---ChHHHHHHH-HHhC-----CeEEEEcCCCCCCHH
Q 027918 133 DESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE 167 (217)
Q Consensus 133 ~~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~ 167 (217)
.+..... ...++..+. ...+ ++++++||++|.|+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 6421111 122333343 3334 379999999999998
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.7e-20 Score=146.02 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=102.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC------cccce----------------------eee------------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTI----------------------GID------------ 51 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~------~~~~~----------------------~~~------------ 51 (217)
....++|+|+|.+|+|||||+|+|++..+.+. ..++. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999876421 11210 000
Q ss_pred -----------EEEEEEEECCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEEE-EEEeCCChhhHHHH
Q 027918 52 -----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNI 106 (217)
Q Consensus 52 -----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~ 106 (217)
.....+...+ ...+.||||||.. .+...+..+++.++.++ +|+|+++..+..+.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000111110 1579999999964 34455667888888776 69999875443333
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH--hC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 107 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 107 ~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
..|+..+. ..+.|+++|+||+|+.+... ...+.++..... .+ .+++++||++|.|+++++++|.+...
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 33444332 34689999999999865322 122222110001 12 36789999999999999999887443
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=5.3e-19 Score=135.20 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc-----
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR----- 86 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 86 (217)
...++|+|+|.+|+|||||+++|++.... ....++.+.......+..++ ..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35699999999999999999999987753 23334444555556666777 68999999999877655444333
Q ss_pred ----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918 87 ----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE 134 (217)
Q Consensus 87 ----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~ 134 (217)
.+|++++|++++..........|+..+......+ .|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 7899999999876542223345777776655433 48999999999854
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=1.3e-19 Score=159.21 Aligned_cols=162 Identities=18% Similarity=0.124 Sum_probs=106.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC-------CCC-------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (217)
....++|+++|.+++|||||+++|.+.. +.. ......++++....+.++.....+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567999999999999999999998631 000 00111122111112223222368999999999999
Q ss_pred cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC--
Q 027918 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEYG-- 152 (217)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~-- 152 (217)
.......++.+|++|+|+|++++... ....++..+... ++| +|+|+||+|+.++... ...+++..++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 88888899999999999999886432 233344444443 577 7899999998652111 12244556666655
Q ss_pred ---CeEEEEcCCCC--------CCHHHHHHHHHHHH
Q 027918 153 ---IKFFETSAKTN--------LNVEQVFFSIARDI 177 (217)
Q Consensus 153 ---~~~~~~Sa~~~--------~~i~~l~~~l~~~~ 177 (217)
++++++||++| .|+.++++.|.+.+
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 35677777666543
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=1.6e-19 Score=133.45 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=99.0
Q ss_pred CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccc
Q 027918 10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRT 79 (217)
Q Consensus 10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~ 79 (217)
.......+|+|+|++|+|||||+++|.+..+.....++.+.......+.+++ .+.+||+||... +..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 3445568999999999999999999998763322233333333222333333 578999999742 222
Q ss_pred hhhhcc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-
Q 027918 80 ITTAYY---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG- 152 (217)
Q Consensus 80 ~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~- 152 (217)
....++ ..++++++++|+.++.+..+ +..|+ .. .+.|+++|+||+|+.... .......+..++....
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 222333 57899999999987654432 22232 22 268999999999974321 1111234445555554
Q ss_pred -CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 153 -IKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 153 -~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+.++++|++++.++++++++|.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 57889999999999999999887753
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=1.7e-18 Score=148.29 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=85.6
Q ss_pred CCCceeEEEEEcCCCCcHHHHHHHHHcC--CC------CC----------CcccceeeeEEEEEEEECCeEEEEEEeeCC
Q 027918 11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG--SF------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTA 72 (217)
Q Consensus 11 ~~~~~~~I~v~G~~~~GKttli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 72 (217)
..++..+|+|+|.+|+|||||+++|+.. .+ .. ......++......+...+ ..++|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence 3467799999999999999999999841 11 00 0011222333334445555 789999999
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
|+..|...+..+++.+|++|+|+|+++..+......|.. +... +.|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 999999999999999999999999998877776666653 3332 689999999999864
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.5e-18 Score=140.01 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhh---cccCCc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGAM 89 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~d 89 (217)
.|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||... +..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 589999999999999999998643211122222333334444443 14789999999743 2222222 245789
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
.+++++|++ ...+..+..|...+..+.. ...|.++|+||+|+... ...+.+.......+++++.+||+++.|++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999999998 6667777777777765431 24789999999998542 22333444455557899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 027918 168 QVFFSIARDIKQRL 181 (217)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (217)
+++++|.+.+....
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=5.3e-18 Score=144.77 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=83.7
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-------------c-----ccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------------F-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.+...+|+|+|+.|+|||||+++|++...... . ....+.......+.... +.++||||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence 34567999999999999999999984321100 0 11223333444445555 7899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~ 133 (217)
+..+...+..+++.+|++++|+|+++.-.... ..++..+... +.|+++|+||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 99999889999999999999999877544332 2444444443 68999999999985
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=1.6e-18 Score=148.53 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceee--eE--------------------------------------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGI--DF-------------------------------------- 52 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~--~~-------------------------------------- 52 (217)
..++|+|+|.+|+|||||+|+|++..+.+. ..+++.. .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 458999999999999999999998765432 2222210 00
Q ss_pred -------------EEEEEEECCeE--EEEEEeeCCCccc---ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027918 53 -------------KIRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114 (217)
Q Consensus 53 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~ 114 (217)
....+...... ..+.||||||... ....+..+++.+|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00000010000 2589999999654 34456678899999999999998877777666654443
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCC--ccChH-------HHHH-----HHHH--------hCCeEEEEcCC-----------
Q 027918 115 QHASDNVNKVLVGNKADMDESKR--AVPTS-------KGQA-----LADE--------YGIKFFETSAK----------- 161 (217)
Q Consensus 115 ~~~~~~~pvivv~nK~Dl~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~----------- 161 (217)
. .+.|+++|+||+|+..... ....+ .... +... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 2578999999999854210 01100 1111 1111 12478999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 027918 162 ---TNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 162 ---~~~~i~~l~~~l~~~~~~ 179 (217)
++.|++++++.|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=2.8e-19 Score=142.69 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=103.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE----------------------------------------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK---------------------------------------- 53 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 53 (217)
..++|+|+|++|||||||+++|.+..+.+......+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4569999999999999999999997763332222110000
Q ss_pred --------------EEEEEECCeEEEEEEeeCCCcccc-------------cchhhhcccCCcEEEEEEeCCChhhHHHH
Q 027918 54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (217)
Q Consensus 54 --------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 106 (217)
...+.... ...+.||||||...+ ......+++++|++|++++..+.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 00111111 136899999998765 456677899999999999876543221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918 107 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173 (217)
Q Consensus 107 ~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (217)
..|+..+......+.|+++|+||+|+... .....+..+.+....+.+|+.++++.+.++++.+..+
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 33455555555557899999999998653 2333343444444556789999999988877765543
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=8.3e-18 Score=139.86 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=80.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-------------C---------cccceeeeEEEEEEEECCeEEEEEEee
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-------------S---------FITTIGIDFKIRTIELDGKRIKLQIWD 70 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-------------~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D 70 (217)
....+|+|+|.+|+|||||+++|+...... . ...+.+.......+..++ ..+.|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 456899999999999999999998631100 0 011111122223344455 7899999
Q ss_pred CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
|||+..|...+..+++.+|++|+|+|+++...... ..++..+. ..++|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 99999999888889999999999999987643222 22222222 23789999999999864
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=4.3e-18 Score=145.86 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-----cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSD--GSFTT-----------S-----FITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 73 (217)
.++..+|+|+|.+|+|||||+++|+. ..+.. . ..+..+.......+.+++ ..++||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 45678999999999999999999984 22110 0 011222222233455555 7899999999
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+..+...+..+++.+|++++|+|+++..+......|.. +... +.|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence 99999989999999999999999998777666655543 3332 689999999999864
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=5.8e-18 Score=130.01 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=82.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhh-------h-
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------A- 83 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~- 83 (217)
...++|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+..++ ..+.||||||...+..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34699999999999999999999987753 22223333334444455565 7899999999876643222 1
Q ss_pred -cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918 84 -YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKVLVGNKADMDE 134 (217)
Q Consensus 84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~ 134 (217)
..+.+|+++||+|++... +.. ...|+..+......+ .|+++|+||+|+..
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 134799999999987532 322 335777776654433 69999999999854
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.1e-17 Score=143.40 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=84.4
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCC--CCCC----------------cccceeeeEEEEEEEEC-----CeEEEEEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS----------------FITTIGIDFKIRTIELD-----GKRIKLQI 68 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~l 68 (217)
.++..+|+|+|..|+|||||+++|+... +... .....++......+.++ +....++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3567899999999999999999997531 1100 01122222232333332 23378999
Q ss_pred eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
|||||+..|...+..+++.+|++|+|+|+++.........|. .+.. .++|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence 999999999988999999999999999999876555444443 2222 2689999999999854
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=2.2e-19 Score=139.81 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=86.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC-CCCCCc--------ccceeeeEEEEEEEECCeEEEEEEeeCCCc-------cc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~ 76 (217)
...++|+|+|++|+|||||+++|++. .+.... .++.........+..++....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44589999999999999999999875 333222 112111111222222444578999999997 44
Q ss_pred ccchhh-------hcccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 77 FRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 77 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
+..+.. .+++. +++++|+.+.+. .+++.+. ...+.... .+.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 444433 33322 334555554332 1222222 12233332 357999999999985421
Q ss_pred -CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918 137 -RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (217)
.....+++..++..++++++++||+++ +++++|..+.+.+....
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 112345677888889999999999999 99999999998886543
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=6.9e-18 Score=132.27 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=96.8
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------cceeeeEE--------------------------------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI------TTIGIDFK-------------------------------- 53 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~------~~~~~~~~-------------------------------- 53 (217)
....++|+|+|.+|+|||||+|+|++..+.+... ++......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 3456899999999999999999999987632211 10000000
Q ss_pred ---------------------EEEEEECCeEEEEEEeeCCCccc-------------ccchhhhcccCCcEEEEEEeCCC
Q 027918 54 ---------------------IRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD 99 (217)
Q Consensus 54 ---------------------~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~ 99 (217)
...+...+ ...+.||||||... +...+..++..+|++++|+|..+
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 00001111 14799999999753 34556678899999999999743
Q ss_pred hhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC------CCCHHHHHHH
Q 027918 100 ESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEQVFFS 172 (217)
Q Consensus 100 ~~s~-~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~ 172 (217)
.... .....+...+ ...+.|+++|+||+|+..... ...+.+.......+..++++++.. +.|+.++++.
T Consensus 180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 3211 1111222222 234689999999999865322 122222210011225666766653 6889999988
Q ss_pred HHHHHHH
Q 027918 173 IARDIKQ 179 (217)
Q Consensus 173 l~~~~~~ 179 (217)
+.+.+..
T Consensus 256 ~~~~~~~ 262 (315)
T 1jwy_B 256 EILYFKN 262 (315)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 8777643
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=1.9e-18 Score=138.97 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEE--E-------------------EECC-eEEEEEEeeCCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--I-------------------ELDG-KRIKLQIWDTAG 73 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G 73 (217)
++|+|+|.+|+|||||+|+|.+........+..+.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987643333333332222221 1 1122 247899999999
Q ss_pred ccc----ccchhh---hcccCCcEEEEEEeCCCh
Q 027918 74 QER----FRTITT---AYYRGAMGILLVYDVTDE 100 (217)
Q Consensus 74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 100 (217)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 456899999999999875
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=136.30 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=81.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-------ccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------ 78 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------ 78 (217)
...++|+|+|++|+|||||++.|++..+. ... .++.........+...+....+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34478999999999999999999987652 111 1222212211222223434589999999975431
Q ss_pred -c------------------hhhhcccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 79 -T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 79 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
. +...++.++++.+++|..... .++.... .|+..+. .+.|+|+|+||+|+.. ..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-PE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-HH
Confidence 1 113345555554444444332 2333333 4555553 2689999999999854 22
Q ss_pred ccCh--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 138 AVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.+.. +.+..++..++++++++|++++.++.++|..|...+.
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 2222 5667777888999999999999999988877776543
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=2e-18 Score=134.48 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=107.3
Q ss_pred HHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-hHHHHH
Q 027918 30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (217)
Q Consensus 30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 107 (217)
+|+.++..+.+. ..+.+|.+..+. ..+..++ .+.+||+ +++++.+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577888888887 778888884443 3332233 7899999 8999999999999999999999999987 688899
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHH
Q 027918 108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 108 ~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
.|+..+... +.|+++|+||+|+.+. .. .++.+.++..++ ++++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~~---~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEKN---ELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHT---TCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHHC---CCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 999877652 6899999999998642 11 144667777777 8999999999999999998765
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=2.2e-16 Score=131.89 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=85.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC----------------------CCCCcccceeeeEEEEEEEECCeEEEEEEee
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 70 (217)
.+.=+|+|+|..++|||||..+|+... .........++......+.+++ ..++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 345689999999999999999996310 0112233334444455666777 7899999
Q ss_pred CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
|||+..|.......++-+|++|+|+|+...-...+...|... ..+ ++|+++++||+|....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~---~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR---ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT---TCCEEEEEECTTSCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh---CCceEEEEecccchhc
Confidence 999999999999999999999999999987655555556433 333 7999999999997543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.1e-15 Score=120.79 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccccc--
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERFR-- 78 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~-- 78 (217)
++|+|+|.+|+|||||+|+|.+..+.....+..+.+.....+.+.+. ...+.||||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987654333333333333333444432 1479999999987643
Q ss_pred --ch---hhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------------
Q 027918 79 --TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI------------------------------ 113 (217)
Q Consensus 79 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l------------------------------ 113 (217)
.+ ...+++.+|++++|+|+++. +.++++..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23357899999999999862 2233322211111
Q ss_pred ----------HH-------------------h-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918 114 ----------EQ-------------------H-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161 (217)
Q Consensus 114 ----------~~-------------------~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (217)
.. + .....|+++++|+.|... ........++.++...+.+++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechH
Confidence 10 0 012489999999998532 12234566777887888999999965
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=2.2e-18 Score=137.10 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=92.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCc------cccee--------------------------------------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG-------------------------------------- 49 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~------~~~~~-------------------------------------- 49 (217)
..++|+|+|.+|+|||||+|+|.+..+.+.. .++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998764211 12100
Q ss_pred -----eeE--EEEEEEECCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEE-EEEEeCCChhhHHHHHH
Q 027918 50 -----IDF--KIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGI-LLVYDVTDESSFNNIRN 108 (217)
Q Consensus 50 -----~~~--~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~ 108 (217)
+.. ....+...+ ...+.||||||.. .+..+...++...+.+ ++|++++..-.-.+
T Consensus 110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 000 001111110 2579999999963 2344556677665544 44566654222112
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH--HHHHhC-CeEEEEcCCCCCCHHHHHHHHHH
Q 027918 109 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 109 ~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
|...+......+.|+++|+||+|+.+.... ..+..+. +....+ .+++.+||+++.|++++++.+.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222333334457899999999998653221 1111110 001123 25678999999999999998876
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=6.1e-17 Score=120.53 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=93.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeee--------------EEEEEEEEC----------------CeE
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--------------FKIRTIELD----------------GKR 63 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~ 63 (217)
...+|+|+|.+|+|||||+++|++.............+ .....+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35799999999999999999998642111111110000 011111110 012
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 143 (217)
..+.+|||+|..... ..+....+.+++|+|+.+... ....+... . +.|+++|+||+|+... .....++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~-~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEA-VGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcc-hhhHHHH
Confidence 468889988851111 111135688999999876532 11111111 1 4688999999998431 1234455
Q ss_pred HHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 144 GQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 144 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
...++... .++++++||++|.|+++++++|.+.+...
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 55555554 37899999999999999999998877543
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.66 E-value=2.8e-16 Score=137.22 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=85.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCC------------CCC----CcccceeeeEEEEEEEE--------------CCe
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGS------------FTT----SFITTIGIDFKIRTIEL--------------DGK 62 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~------------~~~----~~~~~~~~~~~~~~~~~--------------~~~ 62 (217)
++..+|+|+|..++|||||+++|+... +.. ...+..++......+.+ ++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 567899999999999999999998631 100 01111122111122222 334
Q ss_pred EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.+.++||||||+.+|...+..+++.+|++|+|+|++++.++.....|..... .+.|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcch
Confidence 5899999999999999999999999999999999999877777666654332 2689999999999853
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=2.9e-16 Score=124.93 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=68.9
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 143 (217)
..+.||||||.. ......+..+|++++|+|....+....+... -.+.|+++|+||+|+... .. ....
T Consensus 172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~-~~-~~~~ 238 (355)
T 3p32_A 172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHH-KE-ARLA 238 (355)
T ss_dssp CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGH-HH-HHHH
T ss_pred CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcCh-hH-HHHH
Confidence 579999999943 2233445889999999998765443222110 113689999999998431 01 1111
Q ss_pred HHHHHHH---h-------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 144 GQALADE---Y-------GIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 144 ~~~~~~~---~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
...+... . +.+++.+||++|.|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 1 4689999999999999999999988765
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=8.1e-18 Score=125.72 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=90.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE------------EEEEEEC-CeE-----------------
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GKR----------------- 63 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 63 (217)
..++|+|+|.+|+|||||+++|+...+...+..+...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999976554433344333321 1111111 100
Q ss_pred --EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918 64 --IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 141 (217)
Q Consensus 64 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~ 141 (217)
..+.++|++|.-... ..+-...+..+.++|......... ..... . +.|+++|+||+|+.+ ......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~-~~~~~~ 184 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLAD-AVGADI 184 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHH-HHTCCH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCc-hhHHHH
Confidence 135555555521110 011122344566666432211100 00111 1 468899999999853 122345
Q ss_pred HHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 142 SKGQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
++...++... +.+++++||++|.|++++|++|.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 5666666654 4799999999999999999999887653
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=127.24 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEE------EC----------------------
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIE------LD---------------------- 60 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~------~~---------------------- 60 (217)
.+..++|+|+|.+|+|||||+|+|++..+. ....++++. ....... .+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 456789999999999999999999998763 222222211 1100000 00
Q ss_pred -CeE---------EEEEEeeCCCccc-----------ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q 027918 61 -GKR---------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 119 (217)
Q Consensus 61 -~~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~ 119 (217)
+.. ..+.||||||... +...+..++..+|++++|+|+++.........|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 000 2589999999764 345566778899999999999875444555566555543 3
Q ss_pred CCcEEEEEeCCCCCC
Q 027918 120 NVNKVLVGNKADMDE 134 (217)
Q Consensus 120 ~~pvivv~nK~Dl~~ 134 (217)
+.|+++|+||+|+..
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 579999999999854
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=1.7e-15 Score=120.47 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-------------------eEEEEEEeeCCCccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~ 76 (217)
++|+++|.+|+|||||+|+|.+........+..+.+.......+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999987643222122222222212222221 225799999999875
Q ss_pred cc----ch---hhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 027918 77 FR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI-------------------------- 113 (217)
Q Consensus 77 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l-------------------------- 113 (217)
.. .+ ....++.+|++++|+|+++. +..+++..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 12 23357899999999999752 1122221111111
Q ss_pred -------------HH-------------------hc-CCCCcEEEEEeCCCC--CCCCCccChHHHHHHHHHhCCeEEEE
Q 027918 114 -------------EQ-------------------HA-SDNVNKVLVGNKADM--DESKRAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 114 -------------~~-------------------~~-~~~~pvivv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
.. +. -...|+++++||.|. .+.......+.++.++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 00 013799999999983 22111334566778888888999999
Q ss_pred cCCCCCCHHHHH
Q 027918 159 SAKTNLNVEQVF 170 (217)
Q Consensus 159 Sa~~~~~i~~l~ 170 (217)
||+...++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998765555544
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.58 E-value=4.7e-16 Score=132.25 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC--CC------C----------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG--SF------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (217)
-||+|+|..++|||||..+|+.. .. . .......++......+.+++ ..++|+|||||..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 47999999999999999998631 11 0 01112233333334445555 68999999999999
Q ss_pred cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
.......++-+|++|+|+|+...-...+...|... ..+ ++|.++++||+|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc---CCCeEEEEecccccc
Confidence 99999999999999999999876544444444433 333 689999999999754
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=2.3e-14 Score=123.36 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CCcccceeeeEEEEEEEECC-----eEEEEEE
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDG-----KRIKLQI 68 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~l 68 (217)
.++.-||+|+|..++|||||..+|+.. ... .......++......+.+.+ ..+.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 466678999999999999999998631 111 11222333333344444431 2478999
Q ss_pred eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134 (217)
Q Consensus 69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~ 134 (217)
+|||||..|.......++-+|++|+|+|+...-...+...|...... ++|.++|+||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 99999999999999999999999999999886555555555554444 799999999999754
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.4e-14 Score=111.78 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=102.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY 85 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 85 (217)
+...+|.++|.||+|||||+|+|.+........+.+|.+.....+.+.+ .++.|+||||...-. ......+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 4457999999999999999999999887767778888888888888888 689999999964321 1123356
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-------CCCccChHHHHHHHHHhCCeEE
Q 027918 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYGIKFF 156 (217)
Q Consensus 86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~ 156 (217)
+.+|++++|+|++++. .+...+..++.... -...|.++++||.|... .......++...+...+.+.--
T Consensus 148 ~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 7899999999999864 33333334443322 12467889999999632 1123445556666555554222
Q ss_pred EEcCCCCCCHHHHHH
Q 027918 157 ETSAKTNLNVEQVFF 171 (217)
Q Consensus 157 ~~Sa~~~~~i~~l~~ 171 (217)
++-...+...+++.+
T Consensus 226 pv~~~~nv~eddl~d 240 (376)
T 4a9a_A 226 EIAFRCDATVDDLID 240 (376)
T ss_dssp EEEECSCCCHHHHHH
T ss_pred CeeecccCCHHHHHH
Confidence 222223344455443
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=5.5e-14 Score=111.44 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=62.2
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 143 (217)
..+.|+||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+.+.. . ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~-~~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-P-ARRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-H-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-h-HHHH
Confidence 57899999995321 2334678999999999986543221211 11 146889999999984310 0 0011
Q ss_pred HHHHHH----------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 144 GQALAD----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 144 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
...+.. ....+++.+||++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222211 113578999999999999999999887643
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=6.7e-15 Score=125.96 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=95.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee------------------------------------------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI------------------------------------------ 50 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~------------------------------------------ 50 (217)
-..++|+|+|.+++|||||+|.|++..+-+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 34579999999999999999999997763211111110
Q ss_pred ---------eEEEEEEEECCeEEEEEEeeCCCccc-------------ccchhhhcc-cCCcEEEEEEeCCChhhHHHHH
Q 027918 51 ---------DFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIR 107 (217)
Q Consensus 51 ---------~~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 107 (217)
+.....+...+. ..+.|+||||... .......++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 001111111111 3588999999543 112233344 5789999999998753322322
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-H-HHHhC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918 108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-L-ADEYG-IKFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 108 ~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
.++..+ ...+.|+++|+||+|+..... ........ + ....+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~-~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEV---DPQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHH---CTTCSSEEEEEECTTSSCTTC-CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHH---HhcCCCEEEEEeCcccCCcch-hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 233333 334689999999999865322 11111110 0 00112 367789999999999999988763
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.52 E-value=6.2e-15 Score=116.65 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh--
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT-- 141 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~-- 141 (217)
..+.||||||...... .....+|++++|+|+...+.+..+.. .. . +.|+++|+||+|+... .....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~-~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNH-TNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCH-HHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCCh-HHHHHHH
Confidence 5799999999654332 24588999999999976543221111 11 1 3578999999998541 11110
Q ss_pred HHHHHHHHHh-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 142 SKGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 142 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+......... ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211121 357899999999999999999988765
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=1.5e-13 Score=104.79 Aligned_cols=112 Identities=13% Similarity=-0.016 Sum_probs=67.8
Q ss_pred EEEEEeeCCCcccccchhh------hcccCCcEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDESK 136 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~pvivv~nK~Dl~~~~ 136 (217)
+.+.||||||......... ..+.. +++++++|............... ........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4799999999876433211 24456 88888998754332222221111 1111111257999999999985421
Q ss_pred CccChHHHHH----------------------------HHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918 137 RAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQ 179 (217)
Q Consensus 137 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (217)
. .++... ++..++ .+++++||+++.|+++++++|.+.+..
T Consensus 188 -~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 -E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp -H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 1 111111 123333 489999999999999999999887643
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=2.9e-13 Score=105.31 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=78.2
Q ss_pred cccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHHHHHHHHHh
Q 027918 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY 151 (217)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~~ 151 (217)
+++++.+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+. ..+. .++...++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~-~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE-EEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH-HHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc-cccHHHHHHHHHHHHC
Confidence 6677788888999999999999999986 78888899887765 36899999999998642 1111 34455666677
Q ss_pred CCeEEEEcCCCCCCHHHHHHHHH
Q 027918 152 GIKFFETSAKTNLNVEQVFFSIA 174 (217)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~l~ 174 (217)
+.+++++||++|.|++++++.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 88999999999999999987763
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=4e-13 Score=105.97 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=62.8
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 143 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~ 143 (217)
..+.|+||+|...-. ......+|.+++++|....+....+..+ +. ..+.++++||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence 589999999964321 2234689999999998654322111111 11 2355778899996431 1112222
Q ss_pred HHHHHHHh----------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 144 GQALADEY----------GIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 144 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
.+.+.... ..+++.+|+.++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23332211 357899999999999999999988654
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=7.1e-12 Score=100.25 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=63.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER 76 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 76 (217)
....+|+|+|++|+|||||+|.|.+... .....++.+.+.....+.+.+. ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999999766 4455555555555555555541 13689999999543
Q ss_pred -------ccchhhhcccCCcEEEEEEeCCC
Q 027918 77 -------FRTITTAYYRGAMGILLVYDVTD 99 (217)
Q Consensus 77 -------~~~~~~~~~~~~d~~i~v~d~~~ 99 (217)
+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456688999999999864
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=9.3e-14 Score=100.53 Aligned_cols=103 Identities=9% Similarity=-0.022 Sum_probs=67.5
Q ss_pred CCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHH----HHhc-CCCCcEEEEEeCC-CCCCCCCccChHHHH
Q 027918 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI----EQHA-SDNVNKVLVGNKA-DMDESKRAVPTSKGQ 145 (217)
Q Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l----~~~~-~~~~pvivv~nK~-Dl~~~~~~~~~~~~~ 145 (217)
+|+..++.+|++||.++|++|||+|++|.+.++ .+.-+..+ .... ..+.|++|++||. |++. ..+..++.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~ 185 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA 185 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence 378899999999999999999999999875433 22222222 2211 1468999999995 6643 33444433
Q ss_pred HHHH----HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 146 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+... ...|.+..|||.+|+|+.+.++||.+.+.
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3321 23478899999999999999999987663
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=6.3e-13 Score=106.13 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=53.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCcccc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 77 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 77 (217)
...++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45589999999999999999999998765555555555555555555432 135999999997764
Q ss_pred cc-------hhhhcccCCcEEEEEEeCCCh
Q 027918 78 RT-------ITTAYYRGAMGILLVYDVTDE 100 (217)
Q Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~ 100 (217)
.+ .+..+++.+|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 43 456678999999999998764
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=96.64 Aligned_cols=105 Identities=8% Similarity=-0.037 Sum_probs=72.9
Q ss_pred CCCcccccchhhhcccCCcEEEEEEeCCChhhHH---HHHHHHHHHHHhc-CCCCcEEEEEeC-CCCCCCCCccChHHHH
Q 027918 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHA-SDNVNKVLVGNK-ADMDESKRAVPTSKGQ 145 (217)
Q Consensus 71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~pvivv~nK-~Dl~~~~~~~~~~~~~ 145 (217)
.+|+..++.+|++|+.++|++|||+|++|++.++ ++..+...+.... ..+.|++|++|| .|++. ..+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHHH
Confidence 3578899999999999999999999999986433 2222222332221 237899999996 68754 33434333
Q ss_pred HHHH----HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918 146 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIK 178 (217)
Q Consensus 146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (217)
+... ...+.+..|||.+|+|+.+.++||.+.+.
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3221 13478899999999999999999998763
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=1e-11 Score=99.16 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hh
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT 81 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~ 81 (217)
.+|+++|.+|+|||||+|+|++. .......++++.+. ..+.++. .+.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999985 23233344444333 3344443 389999999543221 11
Q ss_pred hhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 82 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
..++ +..+.++++++....-.+..+.. +......+.|+++++||.|..+ ........+.+.+..+..+...+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence 2222 67889999998843211101110 1122234689999999999754 23334455556666676665555
Q ss_pred CCCCCCH
Q 027918 160 AKTNLNV 166 (217)
Q Consensus 160 a~~~~~i 166 (217)
+.+..++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 5544443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=2.8e-10 Score=91.67 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc----ccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
++++|+|++|+|||||++.|++..+.... .+..............+....++++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 57999999999999999999987543211 1121222111222222333478999999853
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=4.6e-10 Score=89.49 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=72.5
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHH
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALA 148 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~----~~~ 148 (217)
..+.|..++..+++.++++++|+|+.++. ..|...+.+... +.|+++|+||+|+.+. ....+... .++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence 35778888999999999999999998864 446666666554 6899999999998542 22233333 335
Q ss_pred HHhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918 149 DEYGI---KFFETSAKTNLNVEQVFFSIARD 176 (217)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (217)
...+. .++.+||++|.|++++++.|.+.
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 66676 79999999999999999988653
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=3.8e-10 Score=93.04 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=84.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHH------cCCCC---C-Ccccc-----------eeeeEEEEEE--------------
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFS------DGSFT---T-SFITT-----------IGIDFKIRTI-------------- 57 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~-------------- 57 (217)
.....|+|+|.+|+||||+++.|. +.... . .+.+. .+..++....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 33211 0 00000 0111111000
Q ss_pred -EECCeEEEEEEeeCCCcccccc-hhh---hc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 027918 58 -ELDGKRIKLQIWDTAGQERFRT-ITT---AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNK 129 (217)
Q Consensus 58 -~~~~~~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK 129 (217)
...+ ..+.|+||||...... ++. .. ...+|.+++|+|+...... ......+... .|+ ++|+||
T Consensus 179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTK 249 (504)
T ss_dssp HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEEC
T ss_pred HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeC
Confidence 0023 5799999999754221 111 11 2278999999999875431 1222223321 464 889999
Q ss_pred CCCCCCCCccChHHHHHHHHHhCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 027918 130 ADMDESKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEQVFFSIARD 176 (217)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~l~~~ 176 (217)
.|.... . ..........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred Cccccc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 997431 1 11222333444443 3468888988 98888888665
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=1.1e-11 Score=98.92 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCC------C-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSF------T-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------- 80 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------- 80 (217)
.+|+++|.+|+|||||+|+|++... . ....+.++. ....+.++. .+.++||||......+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL--DLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec--ceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4799999999999999999988521 1 122233332 223344443 3889999996432211
Q ss_pred hhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918 81 TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 81 ~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
...+ ....+.++++++....-....+.. +......+.|+++++||.|..+ ........+.+.+..+..+.+.
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence 1111 356788888888743211111100 1112234689999999999754 2223344445555556544444
Q ss_pred c
Q 027918 159 S 159 (217)
Q Consensus 159 S 159 (217)
+
T Consensus 310 ~ 310 (368)
T 3h2y_A 310 T 310 (368)
T ss_dssp C
T ss_pred c
Confidence 3
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=7.9e-10 Score=84.47 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcCCCCCC--------cccceeeeEEEEEEEEC--CeEEEEEEeeCCCcccccc-----
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS--------FITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRT----- 79 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~----- 79 (217)
.++++|+|++|||||||++.|++...... ..+. ........+.+. +....++++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47999999999999999999987322111 0000 000111111122 2223789999998321100
Q ss_pred --h-------h--------------hhcccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 80 --I-------T--------------TAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 80 --~-------~--------------~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
. + .-.+..+++.++++|... +-...+ ...+..+. .. .++|+|++|.|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence 0 0 012234688888888542 212122 22333333 23 799999999996431
Q ss_pred C-CccChHHHHHHHHHhCCeEEE
Q 027918 136 K-RAVPTSKGQALADEYGIKFFE 157 (217)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~ 157 (217)
. .......+.......++.++.
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHcCccccC
Confidence 1 111122333334555666553
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=1.5e-09 Score=86.67 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=71.1
Q ss_pred CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH----HH
Q 027918 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LA 148 (217)
Q Consensus 73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~ 148 (217)
.++.|++.+..++..++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.+. ....+...+ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR--SVKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence 467888889889899999999999998763 34444554444 6899999999998642 222233333 34
Q ss_pred HHhCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 027918 149 DEYGI---KFFETSAKTNLNVEQVFFSIARDI 177 (217)
Q Consensus 149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (217)
...+. .++.+||++|.|++++++.|.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55565 789999999999999999886543
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=4.5e-09 Score=80.77 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=70.2
Q ss_pred EeeCCCcc-cccchhhhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027918 68 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 144 (217)
Q Consensus 68 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 144 (217)
|-..||+. .........+..+|++++|+|+.++.+.. .+..|+ .+.|+++|+||+|+.+. ...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence 45678876 34455666789999999999999887654 233332 26899999999998641 112233
Q ss_pred HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918 145 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (217)
.++....+.+++.+||+++.|++++++.+.+.+...
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 344445578999999999999999999888877644
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.81 E-value=5.7e-08 Score=78.26 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-ccceeeeE--EEEEEEECCeEEEEEEeeCCCcccccchhhh-----cccC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG 87 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~~ 87 (217)
..|+|+|++|||||||+|.|.+....... ....+.+. ........ ..-.+.++|++|.......... -+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 48999999999999999999984221110 00001000 01111111 1125889999985421111111 2233
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCccChH----HHHHHHH----HhC-
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD--E----SKRAVPTS----KGQALAD----EYG- 152 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~--~----~~~~~~~~----~~~~~~~----~~~- 152 (217)
.+..++ ++...... .+ ..+...+... +.|+++|.||.|+. + .-...... .+..+.. +.+
T Consensus 149 ~~~~~~-lS~G~~~k-qr-v~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 149 YDFFII-ISATRFKK-ND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp CSEEEE-EESSCCCH-HH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCeEE-eCCCCccH-HH-HHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 454544 77652111 11 1122223332 57999999999952 1 01111222 2333321 222
Q ss_pred --CeEEEEcC--CCCCCHHHHHHHHHHHHHHHh
Q 027918 153 --IKFFETSA--KTNLNVEQVFFSIARDIKQRL 181 (217)
Q Consensus 153 --~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~~ 181 (217)
..++.+|+ .++.|++++.+.|.+.+.+..
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 36788899 667789999999887775444
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=3.6e-08 Score=75.74 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=36.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (217)
...++|+++|.||+|||||+|+|.+.... ....+..+.... .+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 45689999999999999999999987643 333333333322 233333 68999999964
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.58 E-value=2.8e-07 Score=74.65 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=54.3
Q ss_pred EEEEEeeCCCcccccchh----h--hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|........ . .....+|.+++|+|+...... ......+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCcc---
Confidence 578899999954322111 1 122357899999999765432 2222333332 234578999999643
Q ss_pred ccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 138 AVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
..-.+..+....+.|+.+++. |++++
T Consensus 254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 --KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 223445556667888887775 55554
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=4.1e-08 Score=74.62 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (217)
++|+++|.+|+|||||+|+|.+.... ....+..+... ..+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence 69999999999999999999987653 22223222222 2222332 689999999764
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.45 E-value=4.8e-07 Score=73.44 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=48.8
Q ss_pred EEEEEeeCCCcccccc-hh---h--hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRT-IT---T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KVLVGNKADMDES 135 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-vivv~nK~Dl~~~ 135 (217)
..+.|+||||...... +. . ..+..+|.+++|+|+..... .......+.. .. | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc-
Confidence 5789999999654221 11 1 12236899999999875532 2222222221 34 5 788999999632
Q ss_pred CCccChHHHHHHHHHhCCeEEEEc
Q 027918 136 KRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
....+..+....+.++.+++
T Consensus 253 ----~~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 ----KGGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp ----TTHHHHHHHHHSSCCEEEEC
T ss_pred ----chHHHHHHHHHHCCCEEEee
Confidence 11233346666777776654
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=2.6e-07 Score=70.17 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=60.9
Q ss_pred CCCcccc-cchhhhcccCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH
Q 027918 71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL 147 (217)
Q Consensus 71 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~ 147 (217)
.|||... .......+.++|++++|+|+.++.+... +. + . +.|.++|+||+|+.+. ...+....+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~---~~~~~~~~~ 70 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADE---KTTKKWVEF 70 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCH---HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCH---HHHHHHHHH
Confidence 4676532 2355667889999999999998866432 21 2 1 5899999999998652 112233344
Q ss_pred HHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918 148 ADEYGIKFFETSAKTNLNVEQVFFSIAR 175 (217)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (217)
.+..+.++ .+||+++.|++++++.+..
T Consensus 71 ~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 71 FKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 55567888 9999999999999877644
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.30 E-value=7.9e-07 Score=72.00 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=54.7
Q ss_pred EEEEEeeCCCccc--ccc----hhhh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918 64 IKLQIWDTAGQER--FRT----ITTA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135 (217)
Q Consensus 64 ~~~~l~Dt~G~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~ 135 (217)
..+.|+||||... ... .... .....+.+++|+|+...... ......+.... .+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEecccccc-
Confidence 5688999999543 111 1111 11246899999999765432 22233343332 35688999999632
Q ss_pred CCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVE 167 (217)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (217)
..-.+..+....+.|+.+++. |++++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 233455566677899888875 65553
No 228
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.30 E-value=3.7e-07 Score=76.59 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=40.1
Q ss_pred CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccc--cceeeeEEEEEEEE-CCeEEEEEEeeCCCccc
Q 027918 12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFI--TTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER 76 (217)
Q Consensus 12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 76 (217)
....+.|+|+|.+|+|||||+|+|++..... ... ...+.....+.... ......+.|+||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3566899999999999999999999876321 111 11111121111111 11125799999999654
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.21 E-value=7.6e-07 Score=68.97 Aligned_cols=90 Identities=12% Similarity=0.157 Sum_probs=59.6
Q ss_pred cchhhhcccCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhCCeE
Q 027918 78 RTITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEYGIKF 155 (217)
Q Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 155 (217)
+.+.+..+.++|.+++|+|+.++.. ...+..++..... .+.|.++|+||+||.++... ...+....+....+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445557889999999999987654 3344444433332 36899999999998652110 01233344445567899
Q ss_pred EEEcCCCCCCHHHHH
Q 027918 156 FETSAKTNLNVEQVF 170 (217)
Q Consensus 156 ~~~Sa~~~~~i~~l~ 170 (217)
+.+|+.++.|+++++
T Consensus 154 ~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 154 YLTSSKDQDSLADII 168 (307)
T ss_dssp EECCHHHHTTCTTTG
T ss_pred EEEecCCCCCHHHHH
Confidence 999999888877553
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=5.8e-06 Score=70.11 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..|+|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999999863
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.15 E-value=6.6e-06 Score=64.98 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=54.9
Q ss_pred cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918 84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 162 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (217)
...++|.+++|.+.. +. +...+..++...... +.|.++|+||+||.++......+.........+.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 467899999886654 54 344455555444443 6788999999998652110001122233345678999999999
Q ss_pred CCCHHHHHHH
Q 027918 163 NLNVEQVFFS 172 (217)
Q Consensus 163 ~~~i~~l~~~ 172 (217)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.15 E-value=5.4e-06 Score=64.02 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=55.9
Q ss_pred EEEEEeeCCCccc--ccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 134 (217)
Q Consensus 64 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~ 134 (217)
+.+.|+||||... ... +.. .....+|.+++|+|+.... +.......+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5789999999765 321 111 1234689999999986432 22222233332 245 678899999632
Q ss_pred CCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
....+..+....+.++.+++ .|++++++
T Consensus 254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 22345566777788887776 56666543
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.00 E-value=3.6e-07 Score=75.18 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=62.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--cccchh--------hh
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTIT--------TA 83 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~~--------~~ 83 (217)
..+.|+++|.+||||||+.++|....... ...+.............+......+||..|.. ..+..+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999997542111 01111100000000001111345678988873 223333 45
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 027918 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG 127 (217)
Q Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~ 127 (217)
++...++.++|+|.++. +.+....|+..+... +.+++++-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 66667888999999987 455666677666654 33444443
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.91 E-value=2e-05 Score=61.72 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=52.8
Q ss_pred EEEEeeCCCcccccchh----hh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918 65 KLQIWDTAGQERFRTIT----TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 138 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~ 138 (217)
.+.++|++|........ .. ..-..|-.+++.|..... ++......+.... -.-++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 45679999964322211 11 112467888999976543 2333333444332 12378889999522
Q ss_pred cChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 139 VPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
..-.+.......+.|+.+++ +|++++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 22335566777788888877 67666554
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=3.1e-05 Score=62.98 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.+..-|.|+|++++|||+|+|.|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456699999999999999999986
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.55 E-value=4.6e-05 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=8.8e-05 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.39 E-value=0.0019 Score=52.47 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=45.6
Q ss_pred EEEEEeeCCCcccccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK 136 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~ 136 (217)
+.+.|+||||...... ... ......+.+++|+|+..... .......+.. ..+ .-+|+||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~~~- 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGDAR- 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSSSC-
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCCcc-
Confidence 5789999999654321 111 12346788999999875432 2222223332 234 3478999996321
Q ss_pred CccChHHHHHHHHHhCCeEEEE
Q 027918 137 RAVPTSKGQALADEYGIKFFET 158 (217)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~ 158 (217)
. ..+..+....+.|+.++
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 1 23335555566554433
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.36 E-value=9.9e-05 Score=53.42 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999976
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.27 E-value=0.00014 Score=51.96 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.00015 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.26 E-value=0.00014 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999875
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.22 E-value=0.00017 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 244
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.21 E-value=0.00032 Score=50.70 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=24.0
Q ss_pred CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
+...|.........|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 4 TTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp ----CCSCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3334444444556899999999999999999874
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.20 E-value=0.00019 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.19 E-value=0.00019 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999874
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.16 E-value=0.00022 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
--|+|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.15 E-value=0.00022 Score=50.32 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027918 17 KLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~ 36 (217)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999754
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.13 E-value=0.00026 Score=49.34 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998753
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=0.00025 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.11 E-value=0.00025 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999874
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.10 E-value=0.0003 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999753
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.09 E-value=0.00031 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
....|+|+|++|||||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.08 E-value=0.00031 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.06 E-value=0.00031 Score=50.17 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-|+|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00033 Score=50.76 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.|...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00035 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999984
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.04 E-value=0.0003 Score=51.97 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.04 E-value=0.00033 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 469999999999999999998754
No 260
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.02 E-value=0.0004 Score=50.51 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|++|||||||++.|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.01 E-value=0.00037 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00041 Score=48.59 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 027918 16 IKLLLIGDSGVGKSCLLLRF 35 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l 35 (217)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 263
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.00 E-value=0.00045 Score=51.19 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCCCCCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
|.........|+|+|.+||||||+.+.|..
T Consensus 9 p~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 9 PVPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333334446899999999999999999865
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.00 E-value=0.00038 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 265
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00037 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998763
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.00045 Score=51.61 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 027918 16 IKLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~ 36 (217)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.99 E-value=0.00038 Score=52.67 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.98 E-value=0.00038 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 269
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.98 E-value=0.00041 Score=54.80 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~ 40 (217)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998543
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.98 E-value=0.00041 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 271
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.98 E-value=0.00045 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.00045 Score=48.70 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.96 E-value=0.00041 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.96 E-value=0.00048 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.96 E-value=0.00042 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999874
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.95 E-value=0.00041 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00051 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
+.|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 278
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.93 E-value=0.00046 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.93 E-value=0.00046 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5889999999999999999874
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.93 E-value=0.00045 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.92 E-value=0.00052 Score=51.33 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00047 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00048 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.91 E-value=0.00049 Score=52.03 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999999876
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00051 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.91 E-value=0.00049 Score=51.63 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999874
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.91 E-value=0.00053 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.89 E-value=0.00055 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999984
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.88 E-value=0.00055 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 290
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.88 E-value=0.00078 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...+.|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4446899999999999999999865
No 291
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.00055 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 292
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00051 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.00061 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.00064 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.87 E-value=0.00058 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 7999999999999999999863
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.87 E-value=0.00054 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.87 E-value=0.00055 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999874
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.87 E-value=0.00038 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.86 E-value=0.00064 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|.|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.86 E-value=0.00075 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998764
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.86 E-value=0.00063 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.86 E-value=0.00055 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00076 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.85 E-value=0.00061 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
--|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.84 E-value=0.00058 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.83 E-value=0.00068 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.82 E-value=0.00062 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999874
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.81 E-value=0.00041 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cC
Q 027918 17 KLLLIGDSGVGKSCLLLRFS-DG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~-~~ 38 (217)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 64
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.81 E-value=0.00081 Score=47.89 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.81 E-value=0.00071 Score=50.36 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027918 17 KLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~ 36 (217)
-++|+|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999887
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.80 E-value=0.00069 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 312
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.0019 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988764
No 313
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.79 E-value=0.00095 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.78 E-value=0.0007 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
....-|+|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4446899999999999999999876
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.00082 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 316
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.76 E-value=0.00069 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.76 E-value=0.00066 Score=52.41 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++++|++|+|||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998754
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.76 E-value=0.0009 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 319
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.75 E-value=0.00027 Score=54.69 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998743
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.74 E-value=0.0011 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
..+.|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.001 Score=47.39 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.74 E-value=0.0013 Score=47.56 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.....|+|+|++||||||+.+.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33467999999999999999999874
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.73 E-value=0.001 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 324
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.72 E-value=0.00045 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|.|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.72 E-value=0.00082 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.71 E-value=0.001 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 327
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.0011 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 328
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.70 E-value=0.0009 Score=51.69 Aligned_cols=20 Identities=50% Similarity=0.758 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 027918 17 KLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~ 36 (217)
.++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999998
No 329
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.0028 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988763
No 330
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.69 E-value=0.00066 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|++|||||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999873
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.67 E-value=0.0012 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
....-|.|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999876
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.67 E-value=0.0011 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
....-|+|.|+.|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999999875
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.0009 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999843
No 334
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.66 E-value=0.00098 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|+++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.65 E-value=0.0011 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.64 E-value=0.0014 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 337
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.64 E-value=0.0012 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0014 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 339
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.63 E-value=0.0011 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 340
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.63 E-value=0.0011 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.63 E-value=0.00093 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999874
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.63 E-value=0.001 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 343
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0048 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.60 E-value=0.0012 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999999884
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.60 E-value=0.0011 Score=51.20 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=45.6
Q ss_pred EEEEeeCCCcccccc------------hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027918 65 KLQIWDTAGQERFRT------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132 (217)
Q Consensus 65 ~~~l~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl 132 (217)
.+.++|++|...... ..+......+.++++.|....... ...+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence 456889999542211 111233456778889998765432 22233333322 2 24778999885
Q ss_pred CCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918 133 DESKRAVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (217)
.. ..-.+.......+.|+.++.
T Consensus 260 ~a-----~gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TA-----KGGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SC-----CCTTHHHHHHHHCCCEEEEE
T ss_pred cc-----cccHHHHHHHHHCCCeEEEe
Confidence 32 11233455666777776665
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.002 Score=47.20 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 027918 18 LLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~ 37 (217)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67799999999999999875
No 347
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.60 E-value=0.0012 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 57899999999999999999843
No 348
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0012 Score=52.25 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999884
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.59 E-value=0.0012 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0021 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...|+|+|.+||||||+.+.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 351
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0012 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.--|+++|+.||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999865
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.57 E-value=0.0014 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|.|+|.+|||||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 353
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.56 E-value=0.0014 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|.+||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 354
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.56 E-value=0.0013 Score=49.27 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.55 E-value=0.0013 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999853
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.55 E-value=0.0013 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999874
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.54 E-value=0.0021 Score=45.74 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.54 E-value=0.00082 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.52 E-value=0.0012 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.52 E-value=0.0014 Score=49.24 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999864
No 361
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.52 E-value=0.0016 Score=45.93 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 362
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.51 E-value=0.0017 Score=46.77 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.51 E-value=0.0015 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
+.|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.50 E-value=0.0016 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.49 E-value=0.0018 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
..-|+|.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 366
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.49 E-value=0.0011 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5889999999999999999874
No 367
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.49 E-value=0.0013 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|+|++|||||||++.|.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999874
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.48 E-value=0.0015 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|+|++|||||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999976
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.47 E-value=0.0014 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
..-|+|+|++|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999886
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.47 E-value=0.0017 Score=46.32 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.46 E-value=0.0023 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988754
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.46 E-value=0.00063 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0021 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...-|+|+|++|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.45 E-value=0.0017 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 375
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.45 E-value=0.002 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999875
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.45 E-value=0.0023 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...+-|+|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999998854
No 377
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.45 E-value=0.0013 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|++|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.45 E-value=0.0019 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 027918 16 IKLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~ 36 (217)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.42 E-value=0.002 Score=45.04 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.40 E-value=0.004 Score=47.48 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
..+.|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999873
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.40 E-value=0.0017 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.39 E-value=0.002 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 383
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.39 E-value=0.0018 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.39 E-value=0.0024 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.39 E-value=0.0025 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999975
No 386
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.39 E-value=0.0019 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.39 E-value=0.0021 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.38 E-value=0.0019 Score=49.13 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+|+|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999874
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.38 E-value=0.002 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 390
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0016 Score=48.87 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3346899999999999999999875
No 391
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.37 E-value=0.0077 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHH
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~ 36 (217)
.+..-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 455668899999999999999654
No 392
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.37 E-value=0.0018 Score=51.80 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999873
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.36 E-value=0.002 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.36 E-value=0.0011 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999843
No 395
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.35 E-value=0.0026 Score=44.38 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.35 E-value=0.0022 Score=45.40 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998865
No 397
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.35 E-value=0.002 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.--|+++|+.||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34699999999999999999865
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.32 E-value=0.0019 Score=53.55 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.|+|+|++|||||||++.+++-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998743
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.28 E-value=0.0036 Score=44.94 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...+.|.|+|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45688999999999999999998763
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.28 E-value=0.0022 Score=52.68 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=49.7
Q ss_pred EEEEEeeCCCcccccchh----hh-------c-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 64 IKLQIWDTAGQERFRTIT----TA-------Y-YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~----~~-------~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
+.+.|+||+|........ .. + ....+-+++++|+...... ......+.... + ...+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--C-CCEEEEEcCC
Confidence 457789999964322111 11 1 1124568889998655321 12233333322 2 2367899999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
-.. ..-.+..+....+.++.++. +|.+++++
T Consensus 450 ~ta-----kgG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 GTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp GCS-----CCTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred Ccc-----cccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 421 22345566677787776643 45555544
No 401
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.003 Score=46.38 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=69.2
Q ss_pred EEEEE--cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEe-eCCCc-ccc-cchh----hhcccC
Q 027918 17 KLLLI--GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW-DTAGQ-ERF-RTIT----TAYYRG 87 (217)
Q Consensus 17 ~I~v~--G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Dt~G~-~~~-~~~~----~~~~~~ 87 (217)
||+|+ |.++.|||+|++++++..... .. ......+.-+.....+-|| |.-.. ... ..+. .....-
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~~~~--~~----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v 102 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCSSTG--IS----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV 102 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCCCCS--SC----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred ceEEEecCcccccHHHHHHHHhcccccc--cc----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence 45555 999999999999999863222 11 1112223333334455543 33211 110 0111 111123
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhCCeEEEEcCC---
Q 027918 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYGIKFFETSAK--- 161 (217)
Q Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~--- 161 (217)
..++|+|++...+...+.+.. .+. -...+..+++|+.-.+. .....+...+. +..+++.|+.....
T Consensus 103 iggII~~f~~p~~~~~~~i~~---~~~-~~~~dg~~v~Vg~~~~~----~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~ 174 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELLHQ---FMI-AAHRNTFVVLVNVNEEV----EQDEIDELNEIWSNAFTNVIEFVNWKRSKPT 174 (233)
T ss_dssp EEEEEEEECHHHHCGGGTHHH---HHH-HSCTTCEEEEEECCTTC----CHHHHHHHHHHHTTSSSSCEEEEECC----C
T ss_pred cceEEEEEeCCCcchHHHHHH---Hhc-cCCCCceEEEEecCCcc----CCCchhhHHHHHHHHHhcCeEEEEecCCCcc
Confidence 477899998654443333332 222 22223334444432221 11111222222 22346677765331
Q ss_pred -------CCCCHHHHHHHHHHHHHHH
Q 027918 162 -------TNLNVEQVFFSIARDIKQR 180 (217)
Q Consensus 162 -------~~~~i~~l~~~l~~~~~~~ 180 (217)
+..|++.+.+.|-....+.
T Consensus 175 ~~~ne~gE~~Gi~RI~E~Le~h~W~~ 200 (233)
T 3uc9_A 175 VNHNDYGEKLGLDRIQEIIDTHDWLN 200 (233)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHCCCTT
T ss_pred cccccccchhCHHHHHHHHHhCCCCC
Confidence 2346778777777666544
No 402
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.27 E-value=0.0016 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.0024 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|+++|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999863
No 404
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.25 E-value=0.002 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|+|.|++|+|||+|++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988763
No 405
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.22 E-value=0.0033 Score=47.04 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0024 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.0023 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0022 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999999874
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.21 E-value=0.0026 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
++.|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.20 E-value=0.0028 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.-|+|+|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.20 E-value=0.0028 Score=46.82 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..-|+|.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999763
No 412
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.19 E-value=0.003 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.++|.|++|+|||+|++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.19 E-value=0.0032 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.16 E-value=0.0025 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..-++|+|+.|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 345789999999999999999965
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.16 E-value=0.003 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 416
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.16 E-value=0.012 Score=42.19 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=55.6
Q ss_pred EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccCh
Q 027918 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPT 141 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~~ 141 (217)
+.+.|+|+|+.. .......+..+|.+++++..+... ..+..+++.+.... ..+.++.+|+|+.|.. ....
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~----~~~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM----ATML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT----EEEE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC----chHH
Confidence 578999999865 334455667799999999886544 66666666666543 2346778999999842 1223
Q ss_pred HHHHHHHHHhCCeEE
Q 027918 142 SKGQALADEYGIKFF 156 (217)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (217)
.+..++....+.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 444555555665544
No 417
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.15 E-value=0.003 Score=46.66 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999874
No 418
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.15 E-value=0.0034 Score=45.15 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 419
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.15 E-value=0.0031 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998854
No 420
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.07 E-value=0.0028 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.+++.|+||+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988876
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.02 E-value=0.0039 Score=47.86 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.-|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 422
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.99 E-value=0.0044 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999998743
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.98 E-value=0.0038 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
-.|+|+|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0042 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
No 425
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.91 E-value=0.0042 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998853
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.91 E-value=0.0042 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 427
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.004 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-++++|+.|||||||++.|.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999884
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.90 E-value=0.0043 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999866
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.89 E-value=0.0046 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 430
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.88 E-value=0.0048 Score=46.16 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...|++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999976
No 431
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.86 E-value=0.0057 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...+++.|+|+|||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998854
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0047 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|+|||||++.|.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999874
No 433
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.85 E-value=0.0052 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.+++.|++|+|||+|++.+.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999764
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.85 E-value=0.0047 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999999874
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.83 E-value=0.0061 Score=41.82 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027918 18 LLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~ 36 (217)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.80 E-value=0.0047 Score=52.13 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999874
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.79 E-value=0.0054 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.79 E-value=0.0048 Score=46.90 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 439
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.72 E-value=0.006 Score=43.92 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.-|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998754
No 440
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.70 E-value=0.0067 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-+++.|+||+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788899999999999999764
No 441
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.69 E-value=0.0056 Score=47.11 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred EEEEEeeCCCcccccch----hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918 64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~ 137 (217)
..+.|+||+|....... ....+. ..+.+++|+|++.. ...+..+...+.. .+ ..-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence 47899999996643321 112222 35677888887643 2334443332221 11 2356679999632
Q ss_pred ccChHHHHHHHHHhCCeEEEEc
Q 027918 138 AVPTSKGQALADEYGIKFFETS 159 (217)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~S 159 (217)
....+.......+.++..++
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 --SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CCHHHHHHHHTCSCCCSEEC
T ss_pred --chhHHHHHHHHHCcCEEEEE
Confidence 12355566677777765554
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.68 E-value=0.0059 Score=47.40 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998763
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.66 E-value=0.0062 Score=51.57 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|+|+.|+|||||++.|.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999874
No 444
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.66 E-value=0.0067 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 445
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.65 E-value=0.0064 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
...|++.|++|+|||+|++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999986654
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.65 E-value=0.0044 Score=46.65 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998764
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.65 E-value=0.0062 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-|+++|.+||||||+.+.|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999763
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0076 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~ 37 (217)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 449
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.64 E-value=0.012 Score=45.55 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=51.1
Q ss_pred EEEEEeeCCCcccccchh-------hhc-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918 64 IKLQIWDTAGQERFRTIT-------TAY-----YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131 (217)
Q Consensus 64 ~~~~l~Dt~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D 131 (217)
..+.|+|+||........ ... ....+.+++|+|..... +.+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 468899999953222111 111 12478889999986432 22222 22233221 1 2356789999
Q ss_pred CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169 (217)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (217)
... ..-.+..+....+.|+.++.. |+.++++
T Consensus 261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 261 GTA-----KGGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp GCS-----CTTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred Ccc-----chHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 532 223466777888888777654 3444443
No 450
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.62 E-value=0.01 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 13 DCLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 13 ~~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34467999999999999999999874
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.0062 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|+.|||||||++.|.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998843
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.60 E-value=0.0075 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|+.|||||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.59 E-value=0.0068 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.++|+|+.|+|||||++.|.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999843
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.56 E-value=0.0075 Score=47.81 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027918 18 LLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~ 36 (217)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999876
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.56 E-value=0.0073 Score=44.64 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 027918 17 KLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~ 37 (217)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999877754
No 456
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0074 Score=48.81 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
--|++.|+||+|||+|++.+.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999873
No 457
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.53 E-value=0.0092 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHc
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~ 37 (217)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987754
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.51 E-value=0.0078 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0076 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..-.|++.|+||+|||+|++.+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3447999999999999999999874
No 460
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.50 E-value=0.0048 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 461
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.48 E-value=0.0071 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-+.|+|++|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.0077 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999874
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.0072 Score=47.70 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998763
No 464
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.47 E-value=0.0054 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999999874
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.0082 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~~ 39 (217)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998853
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.45 E-value=0.0085 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 467
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0084 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 14 CLIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 14 ~~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..--|++.|+||+|||+|++.+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3347999999999999999999874
No 468
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.0083 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 469
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.41 E-value=0.0047 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999988874
No 470
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.41 E-value=0.013 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998763
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.40 E-value=0.0095 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 472
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.37 E-value=0.0096 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999764
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.37 E-value=0.01 Score=46.34 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.36 E-value=0.0097 Score=46.57 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3689999999999999999875
No 475
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.34 E-value=0.011 Score=41.90 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
|+|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.31 E-value=0.0064 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 477
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.0098 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.--|++.|+||+|||.|++.+.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346999999999999999999873
No 478
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.28 E-value=0.06 Score=41.59 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 027918 18 LLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~~~ 38 (217)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999764
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.24 E-value=0.012 Score=45.55 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4889999999999999999864
No 480
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.23 E-value=0.0047 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999763
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.011 Score=46.19 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 482
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.16 E-value=0.013 Score=45.33 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.+++.|++|+|||+|+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.14 E-value=0.12 Score=37.29 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=54.2
Q ss_pred EEEEEeeCCCc-ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027918 64 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 142 (217)
Q Consensus 64 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~ 142 (217)
+.+.|+|+|+. .. ......+..+|.+|+++..+ ..+...+..+++.+.... +.++.+|+|+.|-.. .....
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~---~~~~~ 139 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYP---SKDGD 139 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTT---SCHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCcc---chHHH
Confidence 57889999986 32 23445667899988888875 455666666776676533 467889999998421 01233
Q ss_pred HHHHHHHHhCCeEE
Q 027918 143 KGQALADEYGIKFF 156 (217)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (217)
+..++.++.+.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 44455555665544
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.13 E-value=0.013 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-|+|+|++|||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35889999999999999999763
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.12 E-value=0.01 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.12 E-value=0.015 Score=40.93 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
.=|++.|++|+|||||.-.|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998754
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.12 E-value=0.014 Score=42.62 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHc
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSD 37 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~ 37 (217)
.-|+|.|.+||||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 488
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.0095 Score=46.24 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
...++|.|+||+|||++++.++..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.10 E-value=0.015 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.-|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 490
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.09 E-value=0.012 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999864
No 491
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.09 E-value=0.0083 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-.|+|+|++|||||||++.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 57999999999999999998764
No 492
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.07 E-value=0.012 Score=48.64 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.06 E-value=0.013 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.++|.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 494
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.013 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 15 ~~~I~v~G~~~~GKttli~~l~~~ 38 (217)
.--|++.|+||+|||+|++.+.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 346999999999999999999874
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.04 E-value=0.013 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~ 38 (217)
.|+++|++|+|||+|++.+.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999873
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.04 E-value=0.014 Score=43.87 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~~ 39 (217)
..|+|.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 479999999999999999998653
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.01 E-value=0.012 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
..++++|++|+|||||++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999998763
No 498
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.01 E-value=0.016 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (217)
Q Consensus 17 ~I~v~G~~~~GKttli~~l~~~~~ 40 (217)
.++|+|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999996544
No 499
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.01 E-value=0.012 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHcC
Q 027918 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (217)
Q Consensus 16 ~~I~v~G~~~~GKttli~~l~~~ 38 (217)
-+++++|+||+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988653
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.00 E-value=0.016 Score=41.89 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 027918 18 LLLIGDSGVGKSCLLLRFS 36 (217)
Q Consensus 18 I~v~G~~~~GKttli~~l~ 36 (217)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999998763
Done!