BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027919
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 6/198 (3%)
Query: 23 ADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAAN 79
+DP+ LQD CVADL + VNG CK D FS KL K T+ GS VT +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVS 136
V PG NTLGVS+AR+D+APGG NPPH HPRATEI V++G+L VG + N L S
Sbjct: 61 VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 137 KSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLT 196
+ ++ GE FV PRGL+HFQ N G A ++ FNSQ G + LTLF S PP+ VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 197 KTFQIGTKEVEKIKSRLA 214
K ++ VE +KS+ A
Sbjct: 181 KALRVEAGVVELLKSKFA 198
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 119/198 (60%), Gaps = 6/198 (3%)
Query: 23 ADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAAN 79
+DP+ LQD CVADL + VNG CK D FS KL K T+ GS VT +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 80 VQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVS 136
V PG NTLGVS+ R+D+APGG NPPH HPRATEI V++G+L VG + N L S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 137 KSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLT 196
+ ++ GE FV PRGL+HFQ N G A ++ FNSQ G + LTLF S PP+ VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 197 KTFQIGTKEVEKIKSRLA 214
K ++ VE +KS+ A
Sbjct: 181 KALRVEAGVVELLKSKFA 198
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/197 (48%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Query: 24 DPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANV 80
DP+ LQD CVADL + VNG CK D FS KL K T+ GS VT +V
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 81 QTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSK 137
PG NTLGVS+ R+D+APGG NPPH HPRATEI V++G+L VG + N L S+
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 138 SIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLTK 197
++ GE FV PRGL+HFQ N G A ++ FNSQ G + LTLF S PP+ VLTK
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 198 TFQIGTKEVEKIKSRLA 214
++ VE +KS+ A
Sbjct: 182 ALRVEAGVVELLKSKFA 198
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 72 GSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA 131
G+ + A+ + PG + ++ A I PG + H HP A E +VL+G++D+ F +
Sbjct: 217 GNELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASE 274
Query: 132 NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIAL-TLFASTPPV 190
+++G+ P+G H +N+ P ++ FN Q+I L T AS P
Sbjct: 275 GKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFND--GDYQSIDLSTWLASNP-- 330
Query: 191 ADNVLTKTFQIGTKEVEKI 209
+VL TFQI + +K+
Sbjct: 331 -SSVLGNTFQISPELTKKL 348
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPR 149
G++ + PG I H H A E +V+EG+ + + + + KG + FPR
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPR 110
Query: 150 GLVH 153
G H
Sbjct: 111 GWGH 114
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Query: 57 FSDKLAKPAATN--NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATE 114
+ +A+P+ + N ++ N T+P L G+S + GI PH + A
Sbjct: 330 LHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANS 389
Query: 115 IVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQL 173
+++V G+ V N + +++G+ V P+ V ++ V+ F +
Sbjct: 390 VIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHH 447
Query: 174 QGTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKIK 210
+ +F + P VL+ ++ +G +V ++K
Sbjct: 448 NAVSSYIKDVFRAIP---SEVLSNSYNLGQSQVRQLK 481
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Query: 57 FSDKLAKPAATN--NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATE 114
+ +A+P+ + N ++ N T+P L G+S + GI PH + A
Sbjct: 331 LHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANS 390
Query: 115 IVFVLEGQLDVGFFT-TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQL 173
+++V G+ V N + +++G+ V P+ V ++ V+ F +
Sbjct: 391 VIYVTRGKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVV--FKTHH 448
Query: 174 QGTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKIK 210
+ +F + P VL+ ++ +G +V ++K
Sbjct: 449 NAVSSYIKDVFRAIP---SEVLSNSYNLGQSQVRQLK 482
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 75 VTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFT-TANV 133
++ N +P L L +S R + GI PH + A +V+V+ G V +
Sbjct: 378 ISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDA 437
Query: 134 LVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIAL--TLFASTP--- 188
++ + +++G+ F+ P +N+G + + GF T+ A TL T
Sbjct: 438 ILDQEVQQGQLFIVP-------QNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTSFLR 490
Query: 189 PVADNVLTKTFQIGTKEVEKIK 210
+ D VL +QI ++ ++K
Sbjct: 491 ALPDEVLANAYQISREQARQLK 512
>pdb|2G9Z|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2G9Z|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 348
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 35 DLTSPIKVNGFPCKANFSEMDFFS-----DKLAKPAATNNTFGSTVTAANVQTIPGLNTL 89
D T I + N ++ ++F D LAK N V ++ TI LN +
Sbjct: 155 DFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDIDI-TIYVLNAI 213
Query: 90 GVSLARIDYAPGGINPPH----THPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145
G R D IN + +P+ T V F TT +++ +KKG N+
Sbjct: 214 G---GRFDQTVQSINQLYIMNEDYPKVT-----------VFFITTNDIIFL--LKKGVNY 257
Query: 146 VFPRGLVHFQKNNGNVP 162
+ + + F K+NG+ P
Sbjct: 258 ISYKNRLMFHKDNGSSP 274
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 93 LARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLV 152
L + +P G PPH H EI +VLEG + + ++ + GE PRG
Sbjct: 41 LTEFEVSPNGSTPPHFHEWEHEI-YVLEGSMGLVLPDQGR---TEEVGPGEAIFIPRGEP 96
Query: 153 H 153
H
Sbjct: 97 H 97
>pdb|2HH9|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans
pdb|2HH9|B Chain B, Thiamin Pyrophosphokinase From Candida Albicans
Length = 339
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 35 DLTSPIKVNGFPCKANFSEMDFFS-----DKLAKPAATNNTFGSTVTAANVQTIPGLNTL 89
D T I + N ++ ++F D LAK N V ++ TI LN +
Sbjct: 155 DFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDIDI-TIYVLNAI 213
Query: 90 GVSLARIDYAPGGINPPHT----HPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145
G R D IN + +P+ T V F TT +++ +KKG N+
Sbjct: 214 G---GRFDQTVQSINQLYIMNEDYPKVT-----------VFFITTNDIIFL--LKKGVNY 257
Query: 146 VFPRGLVHFQKNNGNVP 162
+ + + F K+NG+ P
Sbjct: 258 ISYKNRLMFHKDNGSSP 274
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 0.77, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 42 VNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPG 101
V+GF C A+ + +D + L+ P T + GS GL L VS +D+ PG
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC---------SGLKFLNVSSNTLDF-PG 139
Query: 102 GIN 104
++
Sbjct: 140 KVS 142
>pdb|3DDD|A Chain A, Crystal Structure Of A Putative Acetyltransferase
(Np_142035.1) From Pyrococcus Horikoshii At 2.25 A
Resolution
Length = 288
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 183 LFASTPPVADNVLTKTFQIGTKEV 206
L A +P VA+ +L K FQ+G +E+
Sbjct: 216 LVADSPRVAEKILLKAFQLGAREI 239
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 0.89, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 42 VNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPG 101
V+GF C A+ + +D + L+ P T + GS GL L VS +D+ PG
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC---------SGLKFLNVSSNTLDF-PG 142
Query: 102 GIN 104
++
Sbjct: 143 KVS 145
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 93 LARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLV 152
L + +P G PPH H EI +VLEG + + ++ + GE PRG
Sbjct: 41 LTEFEVSPNGSTPPHFHEWEHEI-YVLEGSXGL---VLPDQGRTEEVGPGEAIFIPRGEP 96
Query: 153 H 153
H
Sbjct: 97 H 97
>pdb|1VJ2|A Chain A, Crystal Structure Of A Novel Family Of
Manganese-Containing Cupin (Tm1459) From Thermotoga
Maritima At 1.65 A Resolution
pdb|1VJ2|B Chain B, Crystal Structure Of A Novel Family Of
Manganese-Containing Cupin (Tm1459) From Thermotoga
Maritima At 1.65 A Resolution
Length = 126
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 99 APGGINPPHTHPRATEIVFVLEGQLDV 125
PGG+ H+HP EI FVL+G+L V
Sbjct: 56 EPGGLIDRHSHPWEHEI-FVLKGKLTV 81
>pdb|2I45|A Chain A, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|B Chain B, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|C Chain C, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|D Chain D, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|E Chain E, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|F Chain F, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|G Chain G, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|H Chain H, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|I Chain I, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|J Chain J, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
Length = 107
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 107 HTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVH 153
HTH + +++F +EG V F S +I++GE V P+ + H
Sbjct: 43 HTHGYSDKVLFAVEGDXAVDFADGG----SXTIREGEXAVVPKSVSH 85
>pdb|1JLY|A Chain A, Crystal Structure Of Amaranthus Caudatus Agglutinin
pdb|1JLY|B Chain B, Crystal Structure Of Amaranthus Caudatus Agglutinin
Length = 304
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 116 VFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNG 159
+F Q+D G +V+ KSI F FP+G V F+ NNG
Sbjct: 135 LFAESSQIDTGSKDVFHVIDWKSI-----FQFPKGYVTFKGNNG 173
>pdb|1JLX|A Chain A, Agglutinin In Complex With T-Disaccharide
pdb|1JLX|B Chain B, Agglutinin In Complex With T-Disaccharide
Length = 303
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 116 VFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNG 159
+F Q+D G +V+ KSI F FP+G V F+ NNG
Sbjct: 134 LFAESSQIDTGSKDVFHVIDWKSI-----FQFPKGYVTFKGNNG 172
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 316
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 317 MGHYVENIGDEP 328
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 316
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 317 MGHYVENIGDEP 328
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 316
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 317 MGHYVENIGDEP 328
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 316
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 317 MGHYVENIGDEP 328
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 255 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 314
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 315 MGHYVENIGDEP 326
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 257 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 316
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 317 MGHYVENIGDEP 328
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 32/72 (44%)
Query: 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150
++ A + PG + H HP E + + G+ + F + + + + G+ P
Sbjct: 252 IASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFA 311
Query: 151 LVHFQKNNGNVP 162
+ H+ +N G+ P
Sbjct: 312 MGHYVENIGDEP 323
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 30 DVCVADLTSPIKVNGFPCKANFSE--MDFFSDKLAKPAATNNTFGS 73
+VC L +NGF C FSE F SD K A+ + + S
Sbjct: 300 EVCSTYLGRDCVINGFGCSGTFSEDSTSFLSDFEGKNIASASAYTS 345
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 137 KSIKKGENFVFPRGLVHFQKNNGNVP 162
+ +++G+ F P G+ H+ NNG+ P
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQP 157
>pdb|3PAY|A Chain A, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|B Chain B, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|C Chain C, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
pdb|3PAY|D Chain D, Crystal Structure Of A Putative Adhesin (Bacova_04077)
From Bacteroides Ovatus At 2.50 A Resolution
Length = 314
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 52 SEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPR 111
E+DF S K+ + ++ F + A N + +PG TL + + GG+N H
Sbjct: 70 DELDFGSYKVLTVGSLSDRFRLSDNAGN-KLVPGTTTLQQVIVSLKRETGGVNFEFQHLY 128
Query: 112 ATEIVFV 118
E+V V
Sbjct: 129 FGEVVEV 135
>pdb|1Y7P|A Chain A, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
pdb|1Y7P|B Chain B, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
pdb|1Y7P|C Chain C, 1.9 A Crystal Structure Of A Protein Of Unknown Function
Af1403 From Archaeoglobus Fulgidus, Probable Metabolic
Regulator
Length = 223
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 175 GTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKIKSR 212
G + I+L++F S P VAD V++ GT V I +
Sbjct: 171 GIRVISLSMFGSVPDVADVVISDPVMAGTLAVMHISEK 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,962,312
Number of Sequences: 62578
Number of extensions: 226679
Number of successful extensions: 621
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 41
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)