Query 027919
Match_columns 217
No_of_seqs 345 out of 1843
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 2.8E-25 6E-30 200.4 18.4 153 52-212 210-362 (367)
2 TIGR03404 bicupin_oxalic bicup 99.9 4E-22 8.8E-27 179.9 18.3 135 70-212 48-185 (367)
3 PLN00212 glutelin; Provisional 99.9 7.5E-22 1.6E-26 182.8 18.2 146 65-214 322-470 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 1.6E-21 3.5E-26 154.3 10.9 131 64-207 6-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 1.5E-19 3.3E-24 143.3 17.2 135 69-207 8-146 (146)
6 COG2140 Thermophilic glucose-6 99.7 2.3E-17 4.9E-22 136.8 12.9 151 52-214 49-201 (209)
7 PLN00212 glutelin; Provisional 99.7 5.9E-17 1.3E-21 150.3 16.4 134 75-212 64-249 (493)
8 PF07883 Cupin_2: Cupin domain 99.5 2.6E-14 5.7E-19 98.7 6.5 70 95-169 2-71 (71)
9 PRK13290 ectC L-ectoine syntha 99.5 9.5E-13 2.1E-17 102.2 11.9 82 89-177 33-115 (125)
10 COG0662 {ManC} Mannose-6-phosp 99.5 1.2E-12 2.6E-17 101.7 12.1 83 89-176 34-116 (127)
11 COG1917 Uncharacterized conser 99.4 1.2E-12 2.7E-17 101.6 11.5 85 82-171 34-118 (131)
12 PRK04190 glucose-6-phosphate i 99.4 1.5E-11 3.3E-16 101.9 13.3 97 75-172 53-157 (191)
13 PRK11171 hypothetical protein; 99.3 6.6E-11 1.4E-15 102.8 15.5 108 50-172 30-138 (266)
14 PRK09943 DNA-binding transcrip 99.3 4.1E-11 8.8E-16 98.5 12.0 76 89-170 105-181 (185)
15 TIGR01479 GMP_PMI mannose-1-ph 99.3 5.9E-11 1.3E-15 110.6 12.6 78 90-172 375-452 (468)
16 PRK15460 cpsB mannose-1-phosph 99.2 7.2E-11 1.6E-15 110.2 12.3 79 89-172 383-461 (478)
17 COG3837 Uncharacterized conser 99.2 5.6E-11 1.2E-15 94.3 9.8 93 81-180 34-129 (161)
18 COG4101 Predicted mannose-6-ph 99.2 2.1E-10 4.5E-15 87.2 9.9 85 90-176 45-129 (142)
19 PF01050 MannoseP_isomer: Mann 99.2 3.1E-10 6.6E-15 90.8 10.8 77 89-170 61-137 (151)
20 TIGR03214 ura-cupin putative a 99.2 8.2E-10 1.8E-14 95.7 13.6 78 90-172 57-135 (260)
21 PRK11171 hypothetical protein; 99.1 7E-10 1.5E-14 96.4 11.4 76 90-170 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.1 2.3E-09 4.9E-14 92.9 12.5 74 90-168 178-251 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 4.5E-09 9.7E-14 82.9 9.9 106 73-182 29-139 (167)
24 PRK13264 3-hydroxyanthranilate 98.8 6.2E-08 1.3E-12 79.0 9.5 70 95-168 38-107 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.8 7.7E-08 1.7E-12 77.3 9.8 67 99-169 36-102 (159)
26 PF06560 GPI: Glucose-6-phosph 98.7 3.4E-07 7.4E-12 75.3 11.1 84 89-172 48-147 (182)
27 PF02311 AraC_binding: AraC-li 98.5 3E-07 6.4E-12 69.5 7.3 65 100-170 12-76 (136)
28 PF12973 Cupin_7: ChrR Cupin-l 98.5 2.5E-07 5.5E-12 67.5 6.6 81 71-167 8-88 (91)
29 TIGR02451 anti_sig_ChrR anti-s 98.5 4.5E-07 9.7E-12 76.6 7.7 72 91-172 127-198 (215)
30 PRK15457 ethanolamine utilizat 98.4 3.4E-06 7.4E-11 71.4 11.6 71 90-170 156-226 (233)
31 PF11699 CENP-C_C: Mif2/CENP-C 98.4 1.8E-06 3.8E-11 62.6 8.4 73 90-168 11-84 (85)
32 PF03079 ARD: ARD/ARD' family; 98.4 2.9E-06 6.2E-11 68.4 9.7 67 104-171 85-151 (157)
33 PRK10371 DNA-binding transcrip 98.4 1.7E-06 3.8E-11 76.2 8.9 60 95-160 30-89 (302)
34 PF06339 Ectoine_synth: Ectoin 98.3 1.4E-05 3E-10 61.6 10.4 85 86-176 30-114 (126)
35 TIGR02272 gentisate_1_2 gentis 98.2 6.6E-06 1.4E-10 73.7 9.6 75 90-169 80-154 (335)
36 COG1791 Uncharacterized conser 98.2 1.7E-05 3.7E-10 64.1 9.5 86 92-179 67-161 (181)
37 PF05523 FdtA: WxcM-like, C-te 98.2 2.3E-05 5.1E-10 61.2 10.1 95 72-172 15-112 (131)
38 PRK10296 DNA-binding transcrip 98.1 2.1E-05 4.6E-10 67.9 10.2 52 101-158 33-84 (278)
39 COG3257 GlxB Uncharacterized p 98.1 2.8E-05 6.1E-10 65.2 10.1 76 92-172 62-138 (264)
40 COG4297 Uncharacterized protei 98.1 9.6E-06 2.1E-10 63.4 6.8 66 101-169 52-118 (163)
41 PF14499 DUF4437: Domain of un 98.1 1.3E-05 2.9E-10 69.0 8.0 104 51-166 3-106 (251)
42 PRK13501 transcriptional activ 98.1 1.7E-05 3.7E-10 69.1 8.2 55 99-159 26-80 (290)
43 PRK13500 transcriptional activ 98.0 2.6E-05 5.7E-10 68.9 8.9 56 99-160 56-111 (312)
44 COG3435 Gentisate 1,2-dioxygen 98.0 1.6E-05 3.4E-10 69.7 6.6 95 70-170 67-166 (351)
45 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.7E-05 5.9E-10 67.3 7.7 61 101-166 33-93 (287)
46 KOG2107 Uncharacterized conser 97.9 2.6E-05 5.6E-10 62.7 6.0 56 105-161 87-142 (179)
47 PRK13503 transcriptional activ 97.9 4.5E-05 9.7E-10 65.6 7.4 53 100-158 24-76 (278)
48 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00015 3.3E-09 57.5 9.6 78 94-175 36-113 (151)
49 PRK13502 transcriptional activ 97.9 7.9E-05 1.7E-09 64.4 8.6 56 99-160 26-81 (282)
50 PF05899 Cupin_3: Protein of u 97.8 5E-05 1.1E-09 53.5 5.3 59 91-156 7-65 (74)
51 TIGR02272 gentisate_1_2 gentis 97.6 0.00039 8.4E-09 62.5 8.8 65 96-168 255-319 (335)
52 COG4766 EutQ Ethanolamine util 97.6 0.0015 3.2E-08 52.1 10.8 70 90-169 99-168 (176)
53 PF05995 CDO_I: Cysteine dioxy 97.4 0.0036 7.9E-08 51.1 11.9 86 90-175 74-168 (175)
54 PF06249 EutQ: Ethanolamine ut 97.4 0.00069 1.5E-08 54.2 7.4 70 91-170 77-146 (152)
55 COG3450 Predicted enzyme of th 97.2 0.0032 7E-08 48.2 8.3 60 91-157 45-104 (116)
56 COG1898 RfbC dTDP-4-dehydrorha 96.9 0.0071 1.5E-07 49.5 8.7 81 100-180 54-146 (173)
57 COG3435 Gentisate 1,2-dioxygen 96.9 0.0037 8E-08 55.1 7.1 65 97-168 267-331 (351)
58 TIGR01221 rmlC dTDP-4-dehydror 96.8 0.027 5.8E-07 46.2 11.1 78 99-176 52-139 (176)
59 PF00908 dTDP_sugar_isom: dTDP 96.6 0.023 4.9E-07 46.6 9.7 78 99-176 51-139 (176)
60 COG3806 ChrR Transcriptional a 96.5 0.014 3.1E-07 48.4 8.1 87 71-172 113-199 (216)
61 PF02678 Pirin: Pirin; InterP 96.4 0.013 2.9E-07 44.2 6.4 64 101-168 39-105 (107)
62 PF14499 DUF4437: Domain of un 96.1 0.0075 1.6E-07 52.1 4.4 94 69-171 153-246 (251)
63 PF13621 Cupin_8: Cupin-like d 95.9 0.043 9.4E-07 45.9 8.0 69 93-162 132-236 (251)
64 COG1741 Pirin-related protein 95.8 0.11 2.4E-06 45.6 10.3 71 95-169 48-122 (276)
65 PF04209 HgmA: homogentisate 1 95.8 0.075 1.6E-06 49.2 9.5 107 51-168 86-195 (424)
66 PF08007 Cupin_4: Cupin superf 95.7 0.1 2.2E-06 46.5 10.1 65 94-159 116-200 (319)
67 COG3257 GlxB Uncharacterized p 95.7 0.043 9.3E-07 46.4 7.0 80 82-167 173-253 (264)
68 PRK10572 DNA-binding transcrip 95.5 0.057 1.2E-06 46.7 7.6 49 106-160 44-92 (290)
69 PF07385 DUF1498: Protein of u 95.5 0.079 1.7E-06 44.9 7.9 71 95-167 91-184 (225)
70 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.048 1E-06 40.1 5.6 73 96-169 5-100 (101)
71 PRK05341 homogentisate 1,2-dio 95.3 0.18 4E-06 46.7 10.2 59 104-168 146-204 (438)
72 KOG3995 3-hydroxyanthranilate 95.3 0.028 6.2E-07 47.2 4.5 55 99-155 41-95 (279)
73 PF12852 Cupin_6: Cupin 95.2 0.16 3.5E-06 41.2 8.8 43 113-158 36-78 (186)
74 TIGR02466 conserved hypothetic 95.1 0.11 2.3E-06 43.6 7.7 76 92-170 97-197 (201)
75 PLN02658 homogentisate 1,2-dio 94.9 0.25 5.4E-06 45.8 10.0 57 106-168 141-197 (435)
76 TIGR01015 hmgA homogentisate 1 94.6 0.29 6.3E-06 45.3 9.6 58 104-168 140-197 (429)
77 PF06865 DUF1255: Protein of u 94.5 0.35 7.6E-06 35.7 8.0 67 95-169 27-93 (94)
78 COG3822 ABC-type sugar transpo 94.4 0.24 5.2E-06 41.1 7.7 68 94-161 89-179 (225)
79 PRK12335 tellurite resistance 94.3 0.23 5E-06 43.3 8.0 62 98-159 18-82 (287)
80 PRK10579 hypothetical protein; 94.1 0.43 9.4E-06 35.1 7.8 65 97-169 29-93 (94)
81 PRK09685 DNA-binding transcrip 94.0 0.43 9.4E-06 41.3 9.2 66 90-160 44-114 (302)
82 PF05118 Asp_Arg_Hydrox: Aspar 93.9 0.2 4.4E-06 40.3 6.4 82 81-167 68-156 (163)
83 PRK00924 5-keto-4-deoxyuronate 93.7 0.46 9.9E-06 41.7 8.6 83 90-174 174-262 (276)
84 PF05726 Pirin_C: Pirin C-term 93.2 0.27 5.8E-06 36.5 5.6 69 94-170 2-70 (104)
85 PF07847 DUF1637: Protein of u 93.1 0.6 1.3E-05 39.1 8.1 84 88-172 41-144 (200)
86 PF02373 JmjC: JmjC domain, hy 92.5 0.24 5.2E-06 36.5 4.6 29 133-161 79-107 (114)
87 PF11142 DUF2917: Protein of u 92.2 0.27 5.8E-06 33.5 4.0 56 96-156 2-57 (63)
88 COG5553 Predicted metal-depend 91.7 1 2.3E-05 36.5 7.4 33 91-124 73-105 (191)
89 PF14525 AraC_binding_2: AraC- 91.6 2.4 5.1E-05 32.9 9.6 65 91-160 34-98 (172)
90 PF09313 DUF1971: Domain of un 91.2 1.5 3.2E-05 31.5 7.1 51 110-160 23-75 (82)
91 PRK15131 mannose-6-phosphate i 90.8 1.8 3.9E-05 39.8 9.2 59 90-156 320-378 (389)
92 PLN02288 mannose-6-phosphate i 90.7 0.84 1.8E-05 42.1 6.9 58 90-151 333-390 (394)
93 COG3508 HmgA Homogentisate 1,2 90.3 4.1 8.9E-05 37.1 10.6 57 105-167 139-195 (427)
94 KOG3706 Uncharacterized conser 90.3 0.19 4E-06 47.2 2.3 60 99-159 325-405 (629)
95 COG2850 Uncharacterized conser 90.1 0.75 1.6E-05 41.8 5.8 61 97-158 125-202 (383)
96 TIGR00218 manA mannose-6-phosp 89.0 3.2 7E-05 36.6 9.1 60 89-156 233-292 (302)
97 KOG2757 Mannose-6-phosphate is 87.2 3.1 6.7E-05 37.9 7.7 71 90-166 332-402 (411)
98 PF06172 Cupin_5: Cupin superf 86.2 15 0.00032 28.9 10.6 77 91-168 41-124 (139)
99 PRK09391 fixK transcriptional 86.2 8.3 0.00018 32.2 9.6 77 90-167 35-112 (230)
100 COG3123 Uncharacterized protei 85.5 3.1 6.6E-05 30.1 5.5 42 111-155 40-81 (94)
101 PF00027 cNMP_binding: Cyclic 85.4 2.2 4.8E-05 29.1 4.9 47 97-145 3-51 (91)
102 PF04622 ERG2_Sigma1R: ERG2 an 84.7 2.3 5E-05 36.1 5.4 87 112-206 119-207 (216)
103 PRK11753 DNA-binding transcrip 84.0 12 0.00026 30.2 9.4 74 94-168 21-99 (211)
104 PRK03606 ureidoglycolate hydro 83.0 8.2 0.00018 31.3 7.8 79 90-168 55-140 (162)
105 PF04115 Ureidogly_hydro: Urei 80.5 9 0.0002 30.9 7.2 82 90-171 56-146 (165)
106 PF04962 KduI: KduI/IolB famil 79.7 11 0.00024 32.8 8.0 95 74-173 136-247 (261)
107 COG1482 ManA Phosphomannose is 79.5 16 0.00035 32.7 9.1 38 112-154 260-297 (312)
108 PRK00924 5-keto-4-deoxyuronate 79.1 16 0.00035 32.1 8.8 53 112-169 73-128 (276)
109 PRK13918 CRP/FNR family transc 78.5 9.2 0.0002 30.8 6.8 54 94-147 7-62 (202)
110 PHA02984 hypothetical protein; 76.8 17 0.00037 31.8 8.1 53 113-167 92-146 (286)
111 PF07172 GRP: Glycine rich pro 75.6 2.9 6.3E-05 30.8 2.7 15 1-16 1-15 (95)
112 PF04962 KduI: KduI/IolB famil 75.3 15 0.00032 32.0 7.5 70 91-167 27-104 (261)
113 PLN02868 acyl-CoA thioesterase 74.8 12 0.00026 34.4 7.2 53 94-147 32-84 (413)
114 PHA02890 hypothetical protein; 74.1 27 0.00058 30.4 8.5 58 113-174 91-151 (278)
115 COG3718 IolB Uncharacterized e 70.8 40 0.00086 29.2 8.7 69 91-160 29-102 (270)
116 cd00038 CAP_ED effector domain 70.4 21 0.00046 24.7 6.3 53 94-147 18-71 (115)
117 PF13640 2OG-FeII_Oxy_3: 2OG-F 69.9 5.4 0.00012 28.5 3.1 71 96-166 4-94 (100)
118 PRK15186 AraC family transcrip 69.0 17 0.00037 32.0 6.6 46 113-162 39-84 (291)
119 TIGR00218 manA mannose-6-phosp 68.4 3 6.5E-05 36.8 1.7 20 136-155 152-171 (302)
120 COG1482 ManA Phosphomannose is 67.6 5 0.00011 35.9 2.9 21 136-156 159-179 (312)
121 PRK15131 mannose-6-phosphate i 67.2 6 0.00013 36.4 3.4 22 135-156 237-258 (389)
122 PRK13395 ureidoglycolate hydro 65.9 36 0.00078 27.8 7.4 65 105-169 72-142 (171)
123 smart00100 cNMP Cyclic nucleot 65.8 37 0.00081 23.4 6.8 54 94-148 18-72 (120)
124 KOG2130 Phosphatidylserine-spe 65.3 10 0.00022 34.2 4.3 45 133-177 261-305 (407)
125 COG3717 KduI 5-keto 4-deoxyuro 64.3 30 0.00065 29.9 6.8 83 90-174 176-264 (278)
126 PRK10202 ebgC cryptic beta-D-g 63.3 73 0.0016 25.1 8.6 52 105-156 58-127 (149)
127 PHA00672 hypothetical protein 62.2 50 0.0011 25.8 7.1 66 90-162 46-111 (152)
128 COG2731 EbgC Beta-galactosidas 61.4 68 0.0015 25.8 8.0 57 104-160 61-137 (154)
129 PRK09392 ftrB transcriptional 61.4 44 0.00095 27.6 7.4 73 95-168 32-107 (236)
130 PRK10402 DNA-binding transcrip 60.6 32 0.0007 28.4 6.5 52 95-147 33-85 (226)
131 COG0664 Crp cAMP-binding prote 58.8 38 0.00083 26.7 6.4 56 93-149 23-79 (214)
132 PRK11161 fumarate/nitrate redu 57.0 46 0.00099 27.4 6.8 51 96-147 40-91 (235)
133 COG1741 Pirin-related protein 54.6 1.5E+02 0.0033 26.0 12.1 42 83-126 166-207 (276)
134 KOG3416 Predicted nucleic acid 53.8 56 0.0012 25.5 6.1 65 84-157 12-80 (134)
135 TIGR03697 NtcA_cyano global ni 53.4 32 0.00069 27.2 5.1 35 112-146 11-46 (193)
136 PF06719 AraC_N: AraC-type tra 51.7 62 0.0013 25.4 6.4 70 90-168 5-77 (155)
137 KOG4281 Uncharacterized conser 51.1 7.5 0.00016 33.0 1.0 38 89-126 73-110 (236)
138 TIGR00022 uncharacterized prot 50.5 90 0.002 24.2 7.1 25 104-128 61-85 (142)
139 PLN02288 mannose-6-phosphate i 50.1 13 0.00027 34.4 2.4 21 136-156 252-272 (394)
140 KOG1633 F-box protein JEMMA an 48.6 22 0.00048 35.7 4.0 75 94-169 139-230 (776)
141 PF04074 DUF386: Domain of unk 48.4 96 0.0021 24.3 7.0 67 90-156 45-134 (153)
142 PF14801 GCD14_N: tRNA methylt 48.1 40 0.00088 22.2 3.9 30 124-153 11-40 (54)
143 PF13994 PgaD: PgaD-like prote 46.5 25 0.00054 27.4 3.3 24 189-212 100-123 (138)
144 PRK14585 pgaD putative PGA bio 45.2 25 0.00055 27.6 3.1 25 188-212 88-112 (137)
145 PRK14584 hmsS hemin storage sy 42.4 32 0.00068 27.6 3.3 25 188-212 97-121 (153)
146 PF10913 DUF2706: Protein of u 41.5 38 0.00083 22.2 3.0 29 21-49 21-50 (60)
147 PLN03192 Voltage-dependent pot 41.3 61 0.0013 32.6 5.9 52 93-145 397-448 (823)
148 KOG2131 Uncharacterized conser 40.8 16 0.00035 33.5 1.6 59 101-161 208-294 (427)
149 PF05721 PhyH: Phytanoyl-CoA d 39.6 52 0.0011 25.8 4.3 27 135-161 180-207 (211)
150 PF13348 Y_phosphatase3C: Tyro 38.4 32 0.00069 23.0 2.4 23 191-213 45-67 (68)
151 PF02787 CPSase_L_D3: Carbamoy 37.5 37 0.0008 26.0 2.9 26 189-214 72-97 (123)
152 PF05962 HutD: HutD; InterPro 36.6 63 0.0014 26.4 4.4 33 112-149 135-167 (184)
153 KOG0498 K+-channel ERG and rel 35.3 66 0.0014 32.2 5.0 48 97-145 446-493 (727)
154 PF12937 F-box-like: F-box-lik 33.7 56 0.0012 19.9 2.9 21 189-209 3-24 (47)
155 PRK02290 3-dehydroquinate synt 32.5 2.1E+02 0.0046 26.0 7.3 85 69-157 249-336 (344)
156 KOG2132 Uncharacterized conser 32.5 43 0.00093 30.3 2.9 76 82-158 241-349 (355)
157 PF13384 HTH_23: Homeodomain-l 31.2 60 0.0013 19.9 2.7 26 189-214 17-42 (50)
158 PRK05467 Fe(II)-dependent oxyg 30.9 1.6E+02 0.0035 25.1 6.0 24 135-158 141-164 (226)
159 KOG1356 Putative transcription 29.7 20 0.00043 36.2 0.3 56 99-159 763-823 (889)
160 KOG0501 K+-channel KCNQ [Inorg 28.8 82 0.0018 31.0 4.2 46 95-145 573-618 (971)
161 PF01238 PMI_typeI: Phosphoman 28.6 39 0.00085 30.8 2.1 22 136-157 251-272 (373)
162 PF00325 Crp: Bacterial regula 28.4 66 0.0014 18.8 2.3 25 190-214 3-27 (32)
163 COG5553 Predicted metal-depend 27.2 1.9E+02 0.0042 23.6 5.5 38 138-175 132-176 (191)
164 PF12071 DUF3551: Protein of u 26.8 1.3E+02 0.0028 21.5 4.0 19 16-34 15-35 (82)
165 TIGR02408 ectoine_ThpD ectoine 23.7 98 0.0021 26.7 3.6 37 136-172 212-250 (277)
166 PF01959 DHQS: 3-dehydroquinat 23.2 3.8E+02 0.0082 24.5 7.2 85 70-158 260-347 (354)
167 PF02796 HTH_7: Helix-turn-hel 23.0 1E+02 0.0022 18.9 2.6 29 182-212 16-44 (45)
168 PF08400 phage_tail_N: Prophag 22.7 3.8E+02 0.0082 21.0 6.5 76 118-202 33-110 (134)
169 KOG1596 Fibrillarin and relate 22.6 55 0.0012 28.7 1.7 19 103-125 84-102 (317)
170 PF07771 TSGP1: Tick salivary 22.3 1.2E+02 0.0025 23.4 3.3 9 40-48 55-63 (120)
171 KOG0500 Cyclic nucleotide-gate 21.2 1.8E+02 0.0039 27.9 4.9 47 96-145 333-379 (536)
172 PRK01322 6-carboxyhexanoate--C 20.4 2.1E+02 0.0044 24.8 4.7 55 20-81 167-221 (242)
173 PF02209 VHP: Villin headpiece 20.3 1.1E+02 0.0023 18.4 2.2 21 190-210 2-22 (36)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.94 E-value=2.8e-25 Score=200.41 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=137.8
Q ss_pred cCCCeeeeCCCCCCCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC
Q 027919 52 SEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA 131 (217)
Q Consensus 52 ~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~ 131 (217)
.++.|+|+....++. ...|++++.++..+||++++ +++++++++||+..++|||++++|++||++|++++++.+++
T Consensus 210 ~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~ 285 (367)
T TIGR03404 210 VPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAG 285 (367)
T ss_pred CCccEEEEhhhCCce--ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecC
Confidence 345688888766653 46678999999999999874 69999999999999999999999999999999999998766
Q ss_pred CeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcceecchhhhcCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 027919 132 NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKIKS 211 (217)
Q Consensus 132 ~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~p~~vla~af~~~~~~v~~l~~ 211 (217)
++.+++.+++||+++||+|..|+++|.|+++++++++|++..++.+.++.++ + .+|++||+++|+++++++++|++
T Consensus 286 g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l-~---~~p~~vl~~~~~~~~~~~~~l~~ 361 (367)
T TIGR03404 286 GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWL-A---LTPPQLVAAHLNLDDEVIDSLKK 361 (367)
T ss_pred CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHH-h---hCCHHHHHHHhCcCHHHHHhccc
Confidence 6667889999999999999999999999999999999999999999988876 4 49999999999999999999997
Q ss_pred h
Q 027919 212 R 212 (217)
Q Consensus 212 ~ 212 (217)
.
T Consensus 362 ~ 362 (367)
T TIGR03404 362 E 362 (367)
T ss_pred c
Confidence 5
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.89 E-value=4e-22 Score=179.87 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=119.4
Q ss_pred CCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcC
Q 027919 70 TFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPR 149 (217)
Q Consensus 70 ~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~ 149 (217)
..|+.++.++..+||++++ +++.++++.||+..++|||. +.|++||++|++++++++++|+.+.+.|++||+++||+
T Consensus 48 ~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~ 124 (367)
T TIGR03404 48 ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPP 124 (367)
T ss_pred ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECC
Confidence 3678999999999999986 59999999999999999997 48999999999999999877887777899999999999
Q ss_pred CCeEEEEecCCCcEEEEEEEcCCC---CcceecchhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 150 GLVHFQKNNGNVPASVIAGFNSQL---QGTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 150 g~~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~~f~~~~~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
|.+|+++|.+ +.+++++++++.. +..+.+..+ |+ .+|++||+|+|+++++++++|+++
T Consensus 125 g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~---~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 125 GIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LA---HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HH---hCCHHHHHHHhCCCHHHHHhcccc
Confidence 9999999984 6688888888764 456667665 46 399999999999999999999875
No 3
>PLN00212 glutelin; Provisional
Probab=99.89 E-value=7.5e-22 Score=182.82 Aligned_cols=146 Identities=19% Similarity=0.320 Sum_probs=124.3
Q ss_pred CCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC-CeEEEEEeCCCC
Q 027919 65 AATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGE 143 (217)
Q Consensus 65 ~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-~~~~~~~L~~GD 143 (217)
.++.++.+++++.++..++|+|+++++++.+++|.||++.+||||++|.|++||++|++.+++++++ ++++..+|++||
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd 401 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ 401 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999866 577888999999
Q ss_pred EEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcceecc--hhhhcCCCCCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027919 144 NFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIA--LTLFASTPPVADNVLTKTFQIGTKEVEKIKSRLA 214 (217)
Q Consensus 144 ~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~p~~vla~af~~~~~~v~~l~~~~~ 214 (217)
+++||+|.+|..... ++...+++.-.+.++-...++ .++|. .||.+||+++|+++++++++||..+.
T Consensus 402 vfVVPqg~~v~~~A~-~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 402 LLIIPQHYAVLKKAE-REGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred EEEECCCCeEEEeec-CCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 999999999976553 455666655444443222222 57888 59999999999999999999998753
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.86 E-value=1.6e-21 Score=154.26 Aligned_cols=131 Identities=33% Similarity=0.530 Sum_probs=109.1
Q ss_pred CCCccCCCCceEEEEecCCcCCCCcCc-eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCC-----eEEEE
Q 027919 64 PAATNNTFGSTVTAANVQTIPGLNTLG-VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN-----VLVSK 137 (217)
Q Consensus 64 ~~~~~~~~g~~v~~~~~~~~Pgl~~~g-is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~-----~~~~~ 137 (217)
+.+.....+++++.++..++|.+.+.. +.+.++.+.||++..|||| ++.|++||++|++++++..+.+ +....
T Consensus 6 ~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~ 84 (144)
T PF00190_consen 6 PRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQ 84 (144)
T ss_dssp SSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEE
T ss_pred CCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeec
Confidence 333445678899999999999655544 4556677799999999999 8999999999999999998755 34455
Q ss_pred E--eCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcceecchhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 027919 138 S--IKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLTKTFQIGTKEVE 207 (217)
Q Consensus 138 ~--L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~p~~vla~af~~~~~~v~ 207 (217)
+ +++||++++|+|.+|++.|.++++...+.++.+.+|..+ +|+++++++|+++++++|
T Consensus 85 ~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 85 KVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 5 999999999999999999999899999999988887765 899999999999998864
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.84 E-value=1.5e-19 Score=143.30 Aligned_cols=135 Identities=33% Similarity=0.623 Sum_probs=115.4
Q ss_pred CCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC-CeEEEEEeCCCCEEEE
Q 027919 69 NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-NVLVSKSIKKGENFVF 147 (217)
Q Consensus 69 ~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-~~~~~~~L~~GD~~~~ 147 (217)
+..|+++..++...+|.+++.++.+.+++++||+..++|+|++..|++||++|++++.+.++. ++.+.+.+++||++++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 566778898998899999999999999999999999999998779999999999999997642 3446789999999999
Q ss_pred cCCCeEEEEecCCCcEEEEEEEcCCCCcceecc---hhhhcCCCCCCHHHHHHHcCCCHHHHH
Q 027919 148 PRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIA---LTLFASTPPVADNVLTKTFQIGTKEVE 207 (217)
Q Consensus 148 P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~---~~~f~~~~~~p~~vla~af~~~~~~v~ 207 (217)
|+|..|++.|.+++++++++ +.+++|...... .++|+ ++++++++++|++++++++
T Consensus 88 p~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 146 (146)
T smart00835 88 PQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEVR 146 (146)
T ss_pred CCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHcC
Confidence 99999999999999999984 666776553222 35666 6999999999999998763
No 6
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=136.77 Aligned_cols=151 Identities=20% Similarity=0.302 Sum_probs=131.5
Q ss_pred cCCCeeeeCCCCCCCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcE--EEEEEecEEEEEEEe
Q 027919 52 SEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATE--IVFVLEGQLDVGFFT 129 (217)
Q Consensus 52 ~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~E--i~yVl~G~~~~~~~~ 129 (217)
..+||+|..+.+... ..++.+.......+|+. .-..+.+.||++...||||+++| +.||++|+.++.+..
T Consensus 49 ~~~~~~yel~~~~~~---~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPG---ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccc---ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 688999998766443 33889999999999986 34578899999999999999988 999999999999998
Q ss_pred cCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcceecchhhhcCCCCCCHHHHHHHcCCCHHHHHHH
Q 027919 130 TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVADNVLTKTFQIGTKEVEKI 209 (217)
Q Consensus 130 ~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~p~~vla~af~~~~~~v~~l 209 (217)
+.|+..+..+++||++++|++..|+..|+|+++.+++.++....+.......++++ ++..+++..++.+.+.++.+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccccCc
Confidence 88888899999999999999999999999999999999999888888777777654 78888888998888888888
Q ss_pred HhhcC
Q 027919 210 KSRLA 214 (217)
Q Consensus 210 ~~~~~ 214 (217)
+.++.
T Consensus 197 ~~~~~ 201 (209)
T COG2140 197 RIKFA 201 (209)
T ss_pred ccccc
Confidence 77665
No 7
>PLN00212 glutelin; Provisional
Probab=99.74 E-value=5.9e-17 Score=150.33 Aligned_cols=134 Identities=17% Similarity=0.346 Sum_probs=112.4
Q ss_pred EEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC-----Ce----------------
Q 027919 75 VTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-----NV---------------- 133 (217)
Q Consensus 75 v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-----~~---------------- 133 (217)
+++.+..+-+-+...|+++.|+++.|++...||+|. +.+++||++|++.++++.+. .+
T Consensus 64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~n-a~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~ 142 (493)
T PLN00212 64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYSN-TPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF 142 (493)
T ss_pred eeeecCCCChhhcccceEEEEEEecCCcccCccccC-CCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence 677777889999999999999999999999999994 79999999999999998531 01
Q ss_pred ----EEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcc--------eecc-------------------hh
Q 027919 134 ----LVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGT--------QNIA-------------------LT 182 (217)
Q Consensus 134 ----~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~--------~~~~-------------------~~ 182 (217)
...+.+++||++.+|+|++||+.|.|+++++.+++++..++.. +.++ .+
T Consensus 143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~n 222 (493)
T PLN00212 143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQN 222 (493)
T ss_pred ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccccCc
Confidence 1126999999999999999999999999999888887665421 1111 24
Q ss_pred hhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 183 LFASTPPVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 183 ~f~~~~~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
+|+ ++++++|+.||+++.++++||+..
T Consensus 223 ifs---GF~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 223 IFS---GFSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred hhh---cCCHHHHHHHHCCCHHHHHHHhcc
Confidence 787 799999999999999999999854
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.52 E-value=2.6e-14 Score=98.70 Aligned_cols=70 Identities=30% Similarity=0.586 Sum_probs=63.8
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
+++++||+..++|+|+...|++||++|++++.++ |+ ...+++||.+++|++..|.+.|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999845999999999999964 44 7799999999999999999999999999999875
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.46 E-value=9.5e-13 Score=102.18 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=71.4
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEE-EEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVG-FFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
.++++.+++++||+..+.|+|.. .|++||++|++++. +++ ++ .+.|++||++++|++.+|++.|. +++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~--g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT--GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC--CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence 46788999999999999999976 79999999999999 641 34 68999999999999999999997 8999999
Q ss_pred EEcCCCCcce
Q 027919 168 GFNSQLQGTQ 177 (217)
Q Consensus 168 ~~~s~~pg~~ 177 (217)
+++...+|..
T Consensus 106 v~tP~~~~~~ 115 (125)
T PRK13290 106 VFNPPLTGRE 115 (125)
T ss_pred EECCCCCCcc
Confidence 9987666543
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.2e-12 Score=101.71 Aligned_cols=83 Identities=29% Similarity=0.360 Sum_probs=74.0
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
...++.++.+.||+...+|.|.+.+|++||++|++.+.+++ + ...|++||++++|+|.+|+..|.|..+..++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~---~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG---E--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC---E--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 45688999999999988888877899999999999999974 3 779999999999999999999999999999999
Q ss_pred EcCCCCcc
Q 027919 169 FNSQLQGT 176 (217)
Q Consensus 169 ~~s~~pg~ 176 (217)
......+.
T Consensus 109 ~~p~~~~e 116 (127)
T COG0662 109 QSPPYLGE 116 (127)
T ss_pred ecCCcCCC
Confidence 77665544
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.45 E-value=1.2e-12 Score=101.58 Aligned_cols=85 Identities=28% Similarity=0.489 Sum_probs=72.5
Q ss_pred CcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCC
Q 027919 82 TIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV 161 (217)
Q Consensus 82 ~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 161 (217)
-++...+..+.+.++.++||+..++|+||...+.+||++|++++++.+ + .+.+++||++++|+|..|++.|.++.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g---~--~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG---E--KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC---C--ceEecCCCEEEECCCCeeeeccCCCC
Confidence 444445566788999999999999999994489999999999999873 3 67999999999999999999999988
Q ss_pred cEEEEEEEcC
Q 027919 162 PASVIAGFNS 171 (217)
Q Consensus 162 ~a~~l~~~~s 171 (217)
+...++++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 7677777665
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.36 E-value=1.5e-11 Score=101.88 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=79.4
Q ss_pred EEEEecCCcCCCCcCceEEEEEEEcCCCc------CCCCCCCCC--cEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEE
Q 027919 75 VTAANVQTIPGLNTLGVSLARIDYAPGGI------NPPHTHPRA--TEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFV 146 (217)
Q Consensus 75 v~~~~~~~~Pgl~~~gis~~~~~l~PG~~------~p~H~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~ 146 (217)
+..+.. ..|.....++.+....++||.. .+.|+|+.. .|+.||++|+..+.+.+.+++.....+++||+++
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 444433 3334555678999999999986 557999753 5999999999999998765555678999999999
Q ss_pred EcCCCeEEEEecCCCcEEEEEEEcCC
Q 027919 147 FPRGLVHFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 147 ~P~g~~H~~~N~g~~~a~~l~~~~s~ 172 (217)
||+|..|+..|.|++++++++++...
T Consensus 132 IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 132 VPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred ECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 99999999999999999999988664
No 13
>PRK11171 hypothetical protein; Provisional
Probab=99.32 E-value=6.6e-11 Score=102.83 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=82.5
Q ss_pred CccCCCeeeeCCCCCCCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCC-CCcEEEEEEecEEEEEEE
Q 027919 50 NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHP-RATEIVFVLEGQLDVGFF 128 (217)
Q Consensus 50 ~v~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp-~a~Ei~yVl~G~~~~~~~ 128 (217)
.+++++.+++.| |+ ..+..++.+... ..+..+.+.+++++||+....|.|+ +.+|++||++|++++.++
T Consensus 30 ~~~p~~~v~~~l--p~----~~~~~~~~L~~~----~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~ 99 (266)
T PRK11171 30 VIPPDDIVTSVL--PG----WENTRAWVLARP----GLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE 99 (266)
T ss_pred EECCcCEEeecC--CC----CCCeEEEEEeCC----CCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC
Confidence 446667777655 32 223444544432 2234688999999999987666664 568999999999999986
Q ss_pred ecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCC
Q 027919 129 TTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 129 ~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~ 172 (217)
+ + ++.|++||+++||++..|.+.|.++++++++++...-
T Consensus 100 g---~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y 138 (266)
T PRK11171 100 G---K--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRY 138 (266)
T ss_pred C---E--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcCC
Confidence 3 4 7899999999999999999999999999999986443
No 14
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.29 E-value=4.1e-11 Score=98.48 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=65.8
Q ss_pred CceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE
Q 027919 89 LGVSLARIDYAPGGIN-PPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~-p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
..+.+.+.+++||+.. +.|+|++ .|++||++|++++.+++ + .+.|++||+++||++.+|.+.|.+++++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~~---~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTING---Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEECC---E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 3456777889999864 4677886 99999999999999864 3 67999999999999999999999999999999
Q ss_pred EEc
Q 027919 168 GFN 170 (217)
Q Consensus 168 ~~~ 170 (217)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 865
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.26 E-value=5.9e-11 Score=110.64 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=70.5
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.+.+.+++++||+..+.|+|+...|.+||++|++++.+++ + ++.|++||+++||+|.+|++.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg---~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD---E--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC---E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 5688899999999888888887789999999999999874 4 6799999999999999999999999999999997
Q ss_pred cCC
Q 027919 170 NSQ 172 (217)
Q Consensus 170 ~s~ 172 (217)
...
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 644
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.24 E-value=7.2e-11 Score=110.17 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=70.1
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.++.+.+++++||+....|+|...+|++||++|++++.+++ + ++.|++||+++||+|.+|++.|.|+++++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg---~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG---D--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC---E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 35788999999999877777766689999999999999974 4 789999999999999999999999999999998
Q ss_pred EcCC
Q 027919 169 FNSQ 172 (217)
Q Consensus 169 ~~s~ 172 (217)
....
T Consensus 458 ~~g~ 461 (478)
T PRK15460 458 RSGS 461 (478)
T ss_pred EcCC
Confidence 6543
No 17
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.24 E-value=5.6e-11 Score=94.30 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=75.5
Q ss_pred CCcCCCCcCceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCC--CeEEEEe
Q 027919 81 QTIPGLNTLGVSLARIDYAPGGI-NPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG--LVHFQKN 157 (217)
Q Consensus 81 ~~~Pgl~~~gis~~~~~l~PG~~-~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g--~~H~~~N 157 (217)
..+-||..-|+. ...++||+. ...|||...+|++|||+|++++.+++ . .+.|+|||++-||+| ..|.+.|
T Consensus 34 G~~~Gl~~fGvn--~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~---~--e~~lrpGD~~gFpAG~~~aHhliN 106 (161)
T COG3837 34 GDALGLKRFGVN--LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG---G--ETRLRPGDSAGFPAGVGNAHHLIN 106 (161)
T ss_pred hhhcChhhcccc--eEEeCCCCccccccccccCceEEEEEcCceEEEECC---e--eEEecCCceeeccCCCcceeEEee
Confidence 356666655444 567899985 56799998999999999999999874 3 679999999999999 9999999
Q ss_pred cCCCcEEEEEEEcCCCCcceecc
Q 027919 158 NGNVPASVIAGFNSQLQGTQNIA 180 (217)
Q Consensus 158 ~g~~~a~~l~~~~s~~pg~~~~~ 180 (217)
.++...+++++-+...-....++
T Consensus 107 ~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 107 RSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred cCCceEEEEEeccccccceeecC
Confidence 99999999998766544444443
No 18
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.1e-10 Score=87.19 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=73.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
+|.+-.++++||+....|.|.+-+-.+||++|+...++++. -.+..+.++||.+|+|+|++|.-.|.+++++..+.+-
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIaR 122 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIAR 122 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEEc
Confidence 67888999999999999999887778999999999999742 2245689999999999999999999999999998887
Q ss_pred cCCCCcc
Q 027919 170 NSQLQGT 176 (217)
Q Consensus 170 ~s~~pg~ 176 (217)
+..++..
T Consensus 123 sDp~~~E 129 (142)
T COG4101 123 SDPNPQE 129 (142)
T ss_pred cCCCCCc
Confidence 7665543
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.17 E-value=3.1e-10 Score=90.84 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=69.6
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.++.+.++.+.||...++|.|....|.++|++|++.+.+++ + .+.+++||++++|+|..|++.|.|+.+..++-+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~---~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD---E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECC---E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 35788999999999999999987899999999999999864 3 679999999999999999999999999999876
Q ss_pred Ec
Q 027919 169 FN 170 (217)
Q Consensus 169 ~~ 170 (217)
-.
T Consensus 136 q~ 137 (151)
T PF01050_consen 136 QT 137 (151)
T ss_pred ec
Confidence 43
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.15 E-value=8.2e-10 Score=95.71 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=67.3
Q ss_pred ceEEEEEEEcCCCcC-CCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 90 GVSLARIDYAPGGIN-PPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 90 gis~~~~~l~PG~~~-p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.+.+.+++++||+.. .+|+|++.+|++||++|++++.+++ + ++.|++||++++|++..|++.|.++++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g---~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEG---E--THELREGGYAYLPPGSKWTLANAQAEDARFFLY 131 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECC---E--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence 578899999998764 4566777789999999999999864 3 679999999999999999999999999999987
Q ss_pred EcCC
Q 027919 169 FNSQ 172 (217)
Q Consensus 169 ~~s~ 172 (217)
-..-
T Consensus 132 ~k~y 135 (260)
T TIGR03214 132 KKRY 135 (260)
T ss_pred Eeee
Confidence 6443
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.11 E-value=7e-10 Score=96.42 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=65.8
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.+.+.+++++||+..+.|.|.+.+|.+||++|++++.+++ + .+.|++||++.|+++.+|++.|.|+++++++..=
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~---~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k 257 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN---D--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK 257 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC---E--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence 3588999999999988853444599999999999999863 4 7799999999999999999999999999998754
Q ss_pred c
Q 027919 170 N 170 (217)
Q Consensus 170 ~ 170 (217)
+
T Consensus 258 ~ 258 (266)
T PRK11171 258 D 258 (266)
T ss_pred c
Confidence 3
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.06 E-value=2.3e-09 Score=92.93 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
++.+.+++++||+..+.|.|...+|.+|||+|+..+.++ |+ .+.+++||++++|++.+|++.|.|+++.++|..
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~---g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD---NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC---CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 567888999999999964444458999999999999986 34 779999999999999999999999999998854
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.98 E-value=4.5e-09 Score=82.88 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=63.6
Q ss_pred ceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC----CeEEEEEeCCCCEEEEc
Q 027919 73 STVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA----NVLVSKSIKKGENFVFP 148 (217)
Q Consensus 73 ~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~----~~~~~~~L~~GD~~~~P 148 (217)
+.+|.+.. -.-|+. .+.+..-++.||...|.|.|.. +|+++|++|+.+..+.... |+..+..+.+++.+.||
T Consensus 29 sH~TvAGa-~~hGmk--evEVwlQTfAPG~~TPiHRHsC-EEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IP 104 (167)
T PF02041_consen 29 SHITVAGA-LLHGMK--EVEVWLQTFAPGSATPIHRHSC-EEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIP 104 (167)
T ss_dssp EEEEEE-H-HHH--S--SEEEEEEEE-TT-B--EEEESS--EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-
T ss_pred ceEEeehh-hhcCce--eeeEEeeeecCCCCCCCccccc-cEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeC
Confidence 44554432 234444 4588889999999999999995 9999999999999998653 66678899999999999
Q ss_pred CCCeEEEEecC-CCcEEEEEEEcCCCCcceecchh
Q 027919 149 RGLVHFQKNNG-NVPASVIAGFNSQLQGTQNIALT 182 (217)
Q Consensus 149 ~g~~H~~~N~g-~~~a~~l~~~~s~~pg~~~~~~~ 182 (217)
.+..|..+|.+ .+++.++++++...-..+.+.++
T Consensus 105 vn~~HQv~NT~e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 105 VNDAHQVWNTNEHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp TT--EEEE---SSS-EEEEEEEESSS--EEEESST
T ss_pred CCCcceeecCCCCcceEEEEEecCCCeEEEEeccc
Confidence 99999999999 48999998877544344454444
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.75 E-value=6.2e-08 Score=79.01 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=56.3
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.+.=.||....+|+|+. +|++|+++|++.+.+.+ +|+.....|++||++++|+|++|+.... +..+.+.+
T Consensus 38 mvvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 38 MVVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEEccCCcccccccCCC-ceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 34447787888999995 99999999999999976 3544578999999999999999998763 45555554
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.75 E-value=7.7e-08 Score=77.31 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=53.8
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.||....+|.|+ .+|++|+++|++.+.+.+. |+.....|++||++++|+|++|..... +.++.+.+=
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvIE 102 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVIE 102 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEEE
Confidence 666777899998 5999999999999998763 544578999999999999999998764 345555443
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.65 E-value=3.4e-07 Score=75.30 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=58.3
Q ss_pred CceEEEEEEEcCCCcC------CCCCCCC------CcEEEEEEecEEEEEEEecCC----eEEEEEeCCCCEEEEcCCCe
Q 027919 89 LGVSLARIDYAPGGIN------PPHTHPR------ATEIVFVLEGQLDVGFFTTAN----VLVSKSIKKGENFVFPRGLV 152 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~------p~H~Hp~------a~Ei~yVl~G~~~~~~~~~~~----~~~~~~L~~GD~~~~P~g~~ 152 (217)
.++......+.||.+. .-|+|+. ..|+.+|++|+..+.+-+..+ +.+...+++||+++||++..
T Consensus 48 ~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 48 RNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp --EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-E
T ss_pred eeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCce
Confidence 3567777888998653 3599987 799999999999999988776 67778999999999999999
Q ss_pred EEEEecCCCcEEEEEEEcCC
Q 027919 153 HFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 153 H~~~N~g~~~a~~l~~~~s~ 172 (217)
|...|+|+++.++.....+.
T Consensus 128 H~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 128 HRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp EEEEE-SSS-EEEEEEEETT
T ss_pred EEEEECCCCcEEEEEEEecC
Confidence 99999999999988877653
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.54 E-value=3e-07 Score=69.47 Aligned_cols=65 Identities=28% Similarity=0.346 Sum_probs=47.5
Q ss_pred CCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 100 PGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 100 PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
++...++|+|+. -|+.||++|+.++.++ ++ .+.+++||++++|+|.+|.....++++...+++.-
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~---~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHID---GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEET---TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEEC---CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 445567899996 9999999999999886 34 67999999999999999999988776777766543
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.54 E-value=2.5e-07 Score=67.50 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=59.0
Q ss_pred CCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCC
Q 027919 71 FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150 (217)
Q Consensus 71 ~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g 150 (217)
.|.++..+. ..+.- .|..+..++++||+..|.|.|++ .|.+|||+|++... .+ .+.+||.++.|+|
T Consensus 8 ~Gv~~~~L~--~~~~~--~g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d~----~~-----~~~~G~~~~~p~g 73 (91)
T PF12973_consen 8 PGVSVKPLH--RDEGE--TGERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSDG----DG-----RYGAGDWLRLPPG 73 (91)
T ss_dssp TTEEEEEEE--ECSSS--TTEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEET----TC-----EEETTEEEEE-TT
T ss_pred CCEEEEEec--cCCCc--ccCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEEC----Cc-----cCCCCeEEEeCCC
Confidence 455666655 23322 24578889999999999999997 78889999998853 22 5699999999999
Q ss_pred CeEEEEecCCCcEEEEE
Q 027919 151 LVHFQKNNGNVPASVIA 167 (217)
Q Consensus 151 ~~H~~~N~g~~~a~~l~ 167 (217)
..|.... ++.|.++.
T Consensus 74 ~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 74 SSHTPRS--DEGCLILV 88 (91)
T ss_dssp EEEEEEE--SSCEEEEE
T ss_pred CccccCc--CCCEEEEE
Confidence 9999884 56677664
No 29
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.49 E-value=4.5e-07 Score=76.58 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
..+..++++||+..|.|.|.+ .|+.+||+|++. ++ ...+.+||.+..|.|..|...+.+++++.++++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 356788999999999999986 999999999954 22 23689999999999999999999989999999987
Q ss_pred CC
Q 027919 171 SQ 172 (217)
Q Consensus 171 s~ 172 (217)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 54
No 30
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.43 E-value=3.4e-06 Score=71.44 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=51.8
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.++...+.+.. ... +||....|+.||++|++++.++ |+ ++.+++||+++||+|..|.+.+++ .++++.+.
T Consensus 156 ~m~aGf~~~~~-~sf--~wtl~~dEi~YVLEGe~~l~Id---G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-AFF--PWTLNYDEIDMVLEGELHVRHE---GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-Ccc--ceeccceEEEEEEEeEEEEEEC---CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 44555555554 333 4555569999999999999996 44 789999999999999996665553 66666654
Q ss_pred c
Q 027919 170 N 170 (217)
Q Consensus 170 ~ 170 (217)
.
T Consensus 226 ~ 226 (233)
T PRK15457 226 W 226 (233)
T ss_pred e
Confidence 3
No 31
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.42 E-value=1.8e-06 Score=62.65 Aligned_cols=73 Identities=27% Similarity=0.438 Sum_probs=54.5
Q ss_pred ceEEEEEEEcCCCcCC-CCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 90 GVSLARIDYAPGGINP-PHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 90 gis~~~~~l~PG~~~p-~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.++...++|+||+.-+ .+.+.. .-++||++|.+++.+.+ . +..+.+|+++++|+|-.-.+.|.++++|+++-+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~-~~vF~V~~G~v~Vti~~---~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDN-TMVFYVIKGKVEVTIHE---T--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SE-EEEEEEEESEEEEEETT---E--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCc-EEEEEEEeCEEEEEEcC---c--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 3567789999999754 466664 88999999999999964 3 679999999999999999999999999998753
No 32
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.39 E-value=2.9e-06 Score=68.38 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=49.9
Q ss_pred CCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcC
Q 027919 104 NPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNS 171 (217)
Q Consensus 104 ~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s 171 (217)
...|.|.+ +|+-|+++|++.+.+-..+++.....+++||.+++|+|+.|++.-..+...+++=.|..
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 35799997 99999999999999987667655689999999999999999998655566666655543
No 33
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.37 E-value=1.7e-06 Score=76.23 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=50.6
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
...-+|..+.++|||.. -|+.|+++|++.+.++ |+ ...+++||.++++++.+|.....++
T Consensus 30 ~~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~---g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 30 IEFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLIN---NE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEeeCCCCCCCCCcccc-EEEEEecCCcEEEEEC---CE--EEEEcCCcEEEEecCCcccccccCC
Confidence 34556777889999996 9999999999999886 44 6799999999999999998765543
No 34
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.26 E-value=1.4e-05 Score=61.60 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=73.5
Q ss_pred CCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEE
Q 027919 86 LNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASV 165 (217)
Q Consensus 86 l~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~ 165 (217)
-.+.|+|+-.-.+.+|.....|+-.. -|.+||++|+.++...+ .|+ .+.++||.++...+...|..+... ++++
T Consensus 30 ~DgmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~ 103 (126)
T PF06339_consen 30 DDGMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRL 103 (126)
T ss_pred cCCCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEE
Confidence 35568999999999999998888776 99999999999998774 465 779999999999999999998754 9999
Q ss_pred EEEEcCCCCcc
Q 027919 166 IAGFNSQLQGT 176 (217)
Q Consensus 166 l~~~~s~~pg~ 176 (217)
+++|++.--|.
T Consensus 104 vCVFnPpltG~ 114 (126)
T PF06339_consen 104 VCVFNPPLTGR 114 (126)
T ss_pred EEEcCCCCcCc
Confidence 99999876554
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.24 E-value=6.6e-06 Score=73.74 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=62.4
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.|....-.+.||...++|.|.. .-+.+|++|+..+..++ |+ ...+++||+++.|++.+|...|.|++++..+...
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 4455667789999999999985 89999999999755553 54 6799999999999999999999999987665443
No 36
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.17 E-value=1.7e-05 Score=64.08 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=66.3
Q ss_pred EEEEEEEcCCCc---------CCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCc
Q 027919 92 SLARIDYAPGGI---------NPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 92 s~~~~~l~PG~~---------~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 162 (217)
....+.+.|+.- ..-|.|.+ .|+-|++.|++.+.+...+|+.+...+.+||.+.+|+|+-||+.-..+..
T Consensus 67 ~~Dvvsv~~~~pk~del~akF~~EH~H~d-~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~ 145 (181)
T COG1791 67 NRDVVSVSPSNPKLDELRAKFLQEHLHTD-DEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPN 145 (181)
T ss_pred eeeEEEeCCCCccHHHHHHHHHHHhccCC-ceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCc
Confidence 344556666442 13599986 99999999999999998888999999999999999999999998665555
Q ss_pred EEEEEEEcCCCCcceec
Q 027919 163 ASVIAGFNSQLQGTQNI 179 (217)
Q Consensus 163 a~~l~~~~s~~pg~~~~ 179 (217)
.+.+=.|. ..+|.+.+
T Consensus 146 f~AvRlF~-~~~gWVa~ 161 (181)
T COG1791 146 FKAVRLFT-EPEGWVAI 161 (181)
T ss_pred EEEEEEee-CCCCceee
Confidence 55555554 46676544
No 37
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.16 E-value=2.3e-05 Score=61.18 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=53.4
Q ss_pred CceEEEEecCC-cCCCCcCceEEEEE-EEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCC-EEEEc
Q 027919 72 GSTVTAANVQT-IPGLNTLGVSLARI-DYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGE-NFVFP 148 (217)
Q Consensus 72 g~~v~~~~~~~-~Pgl~~~gis~~~~-~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD-~~~~P 148 (217)
.|.++.+.... .|. .-. .+..+ ..++|....+|.|....|+++|++|++++.+.+..++ ....|...+ .+++|
T Consensus 15 RG~L~~~e~~~~ipf-~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 15 RGSLSVIERFDDIPF-EIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCcEEEEeccCCCCC-Ccc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 34676665442 443 111 23333 3445555889999999999999999999999864333 567787775 88999
Q ss_pred CCCeEEEEecCCCcEEEEEEEcCC
Q 027919 149 RGLVHFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 149 ~g~~H~~~N~g~~~a~~l~~~~s~ 172 (217)
+|++|.+.|.+++ +++++ +.+.
T Consensus 91 pg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp TT-EEEEE---TT--EEEE-EESS
T ss_pred CchhhHhhccCCC-cEEEE-EcCC
Confidence 9999999999766 66665 4443
No 38
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.13 E-value=2.1e-05 Score=67.89 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEec
Q 027919 101 GGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 101 G~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
+...++|||.. .|++||++|++++.++ ++ .+.+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~---~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDY-YEFTLVLTGRYYQEIN---GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccccc-EEEEEEEeceEEEEEC---CE--EEEECCCcEEEeCCCCccceeee
Confidence 34568999985 9999999999999986 44 67999999999999999976543
No 39
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.12 E-value=2.8e-05 Score=65.24 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=64.8
Q ss_pred EEEEEEEcCCC-cCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 92 SLARIDYAPGG-INPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 92 s~~~~~l~PG~-~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
+-..+++.|++ ...+-.-++++-++||++|++++.+.+ + ++.|++|+..++|+|..|.++|...+++++.++-.
T Consensus 62 ~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G---~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 62 VQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG---K--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred hhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC---e--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEee
Confidence 34568887876 566777788899999999999999874 4 88999999999999999999999999999988754
Q ss_pred CC
Q 027919 171 SQ 172 (217)
Q Consensus 171 s~ 172 (217)
.-
T Consensus 137 ~Y 138 (264)
T COG3257 137 RY 138 (264)
T ss_pred cc
Confidence 43
No 40
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.11 E-value=9.6e-06 Score=63.37 Aligned_cols=66 Identities=23% Similarity=0.403 Sum_probs=53.5
Q ss_pred CCcCC-CCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 101 GGINP-PHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 101 G~~~p-~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
|++.+ -|+|.++.|++.|++|+..+.+++++|. ...+++||++++|+|+-|. ++....+..++..|
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~-rl~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHC-RLHSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccc-cccCCCCeEEEccc
Confidence 44444 4899999999999999999999998776 6799999999999999996 44445566665554
No 41
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.09 E-value=1.3e-05 Score=68.98 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=57.0
Q ss_pred ccCCCeeeeCCCCCCCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEec
Q 027919 51 FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT 130 (217)
Q Consensus 51 v~~~df~~~~~~~~~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~ 130 (217)
+.++|..|.-+.-.. ...+.....+. ..|.-. |-+..++++++|-..|||+|. +++-+|||+|++..+ +
T Consensus 3 v~~~d~~w~~~~p~~---~~~~~~~~~L~--gd~~~~--g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~- 71 (251)
T PF14499_consen 3 VHADDVKWGPLNPAR---GDKGPGAAVLW--GDPTKD--GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D- 71 (251)
T ss_dssp GGS--EEEE--TTS----TTS--EEEEEE--EE--TT--S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-
T ss_pred cchhhccccccCCCC---CCCCcceeeee--cCcccC--CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-
Confidence 567888887332111 22334444443 444333 558899999999999999999 499999999987764 2
Q ss_pred CCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEE
Q 027919 131 ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 166 (217)
Q Consensus 131 ~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l 166 (217)
.+...+-|.+|..+..|+|..|.....+++.+.++
T Consensus 72 -~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 72 -PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp -EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred -CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 23344679999999999999998876665555444
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.05 E-value=1.7e-05 Score=69.06 Aligned_cols=55 Identities=24% Similarity=0.129 Sum_probs=46.6
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecC
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNG 159 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 159 (217)
.+....++|||.. .|++||++|++++.+++ + .+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~~---~--~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQF-CEIVIVWRGNGLHVLND---H--PYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCccccccc-eeEEEEecCceEEEECC---e--eeeecCCeEEEEcCCCcccccccC
Confidence 4444567999986 99999999999999863 4 779999999999999999987543
No 43
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.03 E-value=2.6e-05 Score=68.89 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=47.2
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
.|....++|||+. .|++||++|++.+.+++ + .+.+++||+++++++.+|.+....+
T Consensus 56 ~~~~~~~~H~H~~-~el~~v~~G~g~~~v~~---~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHDF-CELVIVWRGNGLHVLND---R--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccce-EEEEEEEcCeEEEEECC---E--EEeecCCeEEEECCCCeecccccCC
Confidence 3444578999985 99999999999999864 3 6799999999999999999876543
No 44
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.99 E-value=1.6e-05 Score=69.66 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=74.1
Q ss_pred CCCceEEEEecCCcCCCCcCc-----eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCE
Q 027919 70 TFGSTVTAANVQTIPGLNTLG-----VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGEN 144 (217)
Q Consensus 70 ~~g~~v~~~~~~~~Pgl~~~g-----is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~ 144 (217)
..++..+.+ .-+-|+++++. +....--+.||...|.|.|.. .-+-+|+||+..+..++ |+ ...+++||.
T Consensus 67 ~~~a~RRvi-~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDf 140 (351)
T COG3435 67 AREAVRRVI-YLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGKGAYTVVD--GE--RTPMEAGDF 140 (351)
T ss_pred cccceeEEE-EecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEeccceeEeec--Cc--eeeccCCCE
Confidence 444444333 34667777763 122334578999999999985 89999999999988885 54 678999999
Q ss_pred EEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 145 FVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 145 ~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
+.-|++.+|...|.|++|+..+-.++
T Consensus 141 ilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 141 ILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred EEccCceeccCCCCCCCceEEEcccc
Confidence 99999999999999999999886544
No 45
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.96 E-value=2.7e-05 Score=67.27 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEE
Q 027919 101 GGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 166 (217)
Q Consensus 101 G~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l 166 (217)
+...++|||.+.-|++|+++|++.+.+++ + .+.+++||++++|+|.+|.+...++....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~---~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDE---H--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECC---E--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 45578999974489999999999988863 4 6799999999999999999876554433333
No 46
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.91 E-value=2.6e-05 Score=62.67 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=50.0
Q ss_pred CCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCC
Q 027919 105 PPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV 161 (217)
Q Consensus 105 p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 161 (217)
..|.|.. +|+-||++|+..+-+.+.+++....-+++||.+++|+|+-|++.-..+.
T Consensus 87 EEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n 142 (179)
T KOG2107|consen 87 EEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN 142 (179)
T ss_pred HHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence 5799997 9999999999999999888888888899999999999999999765433
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.87 E-value=4.5e-05 Score=65.55 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEec
Q 027919 100 PGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 100 PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
+....++|||.. .|++||++|++++.+++ + .+.+++||++++|++..|.+...
T Consensus 24 ~~~~~~~H~H~~-~ei~~v~~G~~~~~i~~---~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHDF-HEIVIVEHGTGIHVFNG---Q--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccCc-eeEEEEecCceeeEecC---C--cccccCCcEEEECCCccchhhhc
Confidence 445678999986 99999999999999874 3 67999999999999999987654
No 48
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.86 E-value=0.00015 Score=57.49 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=50.6
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCC
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQL 173 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~ 173 (217)
..+.=.|+...-.|.-+. +|++|.++|.+.+.+.+ +|+.....+++||++..|++++|+-.-.. ..+.+++-....
T Consensus 36 VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~ 111 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRP 111 (151)
T ss_dssp EEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---
T ss_pred EEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccC
Confidence 445567777888899986 99999999999999987 57777889999999999999999876653 455555544444
Q ss_pred Cc
Q 027919 174 QG 175 (217)
Q Consensus 174 pg 175 (217)
++
T Consensus 112 ~~ 113 (151)
T PF06052_consen 112 EG 113 (151)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 49
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.85 E-value=7.9e-05 Score=64.36 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=46.8
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
.|....++|||.. -|++||++|++++.++ ++ .+.+++||++++|++.+|.+...++
T Consensus 26 ~~~~~~~~H~h~~-~~l~~v~~G~~~~~i~---~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHEF-CELVMVWRGNGLHVLN---ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccce-EEEEEEecCcEEEEEC---CE--EEeecCCcEEEECCCCcccccccCC
Confidence 4555578999985 9999999999999986 34 6799999999999999998765443
No 50
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.79 E-value=5e-05 Score=53.45 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=43.1
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
++....+-.||.. +.++. ..|++|||+|++++... +|+ ++++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEE
Confidence 3455566777652 23333 39999999999999964 365 689999999999999866554
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.57 E-value=0.00039 Score=62.46 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=53.5
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 96 IDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
..+++|....+|.|.. ..+++|++|+.+..+++ + +...++||+|++|....|...|. +++.++.+
T Consensus 255 q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig~---~--~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 255 QLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIGD---A--VFRFSPKDVFVVPSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred hccCCCCCCCCccccc-cEEEEEEeCeEEEEECC---E--EEEecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence 4678888899999985 99999999999999974 3 67999999999999988877764 45555444
No 52
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0015 Score=52.06 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=51.4
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.+++...++.+ ...||--. -+|+-|||||++.+.+.+ + +.+.++||++++|.|.---+.-+|. ++++-+.
T Consensus 99 ~l~aG~m~~~~-~tf~wtl~--yDe~d~VlEGrL~V~~~g---~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTLN--YDEIDYVLEGRLHVRIDG---R--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred ccccceeeecc-ccCcceec--ccceeEEEeeeEEEEEcC---C--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 44555667777 55555433 489999999999999874 4 6799999999999998776665553 6665543
No 53
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.41 E-value=0.0036 Score=51.13 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=58.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC-C-------eEEEEEeCCCCEEEEcCCCeEEEEecC-C
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-N-------VLVSKSIKKGENFVFPRGLVHFQKNNG-N 160 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-~-------~~~~~~L~~GD~~~~P~g~~H~~~N~g-~ 160 (217)
.+++..+...||...+.|=|.++.=++.|++|+++-..-... + ......+..|....++.+.+|...|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 467888999999999999999867788899999876543222 2 112345778888889999999999987 8
Q ss_pred CcEEEEEEEcCCCCc
Q 027919 161 VPASVIAGFNSQLQG 175 (217)
Q Consensus 161 ~~a~~l~~~~s~~pg 175 (217)
++++-+=+|......
T Consensus 154 ~~avSLHvYspPl~~ 168 (175)
T PF05995_consen 154 EPAVSLHVYSPPLEQ 168 (175)
T ss_dssp S-EEEEEEEES--SE
T ss_pred CCEEEEEEcCCChhh
Confidence 899888888775433
No 54
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.40 E-value=0.00069 Score=54.23 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=46.2
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
++...+++... +.-|.-.-+|+.||++|++++... |+ +++.++||+++||+|.-=.+..+ ..++++-+..
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~---G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y 146 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID---GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY 146 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC---CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence 34444555542 344665569999999999999854 55 77999999999999987766544 3466555443
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.15 E-value=0.0032 Score=48.17 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=45.9
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEe
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN 157 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 157 (217)
++...-+-.||. ++++-...|+.++|+|++++.-++ |+ ..++++||+++||+|..=.+.-
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~--Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG--GE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC--Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence 344555656654 566655699999999999998553 54 7799999999999998766554
No 56
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.0071 Score=49.46 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCCcCCCCCCCCC-cEEEEEEecEEEEEEEecC------CeEEEEEeCCC--CEEEEcCCCeEEEEecCCCcEEEEE---
Q 027919 100 PGGINPPHTHPRA-TEIVFVLEGQLDVGFFTTA------NVLVSKSIKKG--ENFVFPRGLVHFQKNNGNVPASVIA--- 167 (217)
Q Consensus 100 PG~~~p~H~Hp~a-~Ei~yVl~G~~~~~~~~~~------~~~~~~~L~~G--D~~~~P~g~~H~~~N~g~~~a~~l~--- 167 (217)
||-...+|+|..- .+++.|++|++.....+-- |+.....|.+- ..+++|+|..|.+.|.+++...++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~ 133 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE 133 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence 8888899999876 8999999999987776521 45566677766 7999999999999999988755444
Q ss_pred EEcCCCCcceecc
Q 027919 168 GFNSQLQGTQNIA 180 (217)
Q Consensus 168 ~~~s~~pg~~~~~ 180 (217)
.++.+.|+.....
T Consensus 134 ~Y~p~~~~~i~~n 146 (173)
T COG1898 134 EYDPEHERGIPWN 146 (173)
T ss_pred eeCccccccccCC
Confidence 3455555444433
No 57
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.86 E-value=0.0037 Score=55.08 Aligned_cols=65 Identities=23% Similarity=0.163 Sum_probs=55.1
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 97 DYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 97 ~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
-++||-...+|.|.+ .-+..|.+|+.+..+++ + ++..++||+|++|.-..|.+.|- .+++.+++.
T Consensus 267 lL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~---~--rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGG---E--RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceeccC-CEEEEEEecceeEEECC---E--EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 467888888999987 88899999999999874 4 67999999999999999998885 677777654
No 58
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.76 E-value=0.027 Score=46.22 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=57.6
Q ss_pred cCCCcCCCCCCC--CCcEEEEEEecEEEEEEEec------CCeEEEEEeCC--CCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 99 APGGINPPHTHP--RATEIVFVLEGQLDVGFFTT------ANVLVSKSIKK--GENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 99 ~PG~~~p~H~Hp--~a~Ei~yVl~G~~~~~~~~~------~~~~~~~~L~~--GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.+|.+..+|.|. ....+++|++|++...+++- -|+.....|.+ +..++||+|..|.+.+.+++...++.+
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 567788899983 35899999999998887763 15767778887 559999999999999988664444433
Q ss_pred EcCCCCcc
Q 027919 169 FNSQLQGT 176 (217)
Q Consensus 169 ~~s~~pg~ 176 (217)
-..-+|+.
T Consensus 132 ~~~y~p~~ 139 (176)
T TIGR01221 132 TDYYAPEY 139 (176)
T ss_pred CCCcCccc
Confidence 23334544
No 59
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.60 E-value=0.023 Score=46.64 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred cCCCcCCCCCCCCC---cEEEEEEecEEEEEEEec------CCeEEEEEeCCCC--EEEEcCCCeEEEEecCCCcEEEEE
Q 027919 99 APGGINPPHTHPRA---TEIVFVLEGQLDVGFFTT------ANVLVSKSIKKGE--NFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a---~Ei~yVl~G~~~~~~~~~------~~~~~~~~L~~GD--~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
.+|.+..+|.|... ..++.|++|++...+.+- -|+.....|.+++ .++||+|..|.+.+.+++...++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 45777889998763 589999999998877762 2677888898886 799999999999999776444444
Q ss_pred EEcCCCCcc
Q 027919 168 GFNSQLQGT 176 (217)
Q Consensus 168 ~~~s~~pg~ 176 (217)
+-..-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 433345544
No 60
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=96.54 E-value=0.014 Score=48.44 Aligned_cols=87 Identities=21% Similarity=0.165 Sum_probs=67.6
Q ss_pred CCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCC
Q 027919 71 FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRG 150 (217)
Q Consensus 71 ~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g 150 (217)
.|+++..+....- ...+++++.+.||...|-|+|-+ .|.+.|++|.. .+++| .+.+||...-+.+
T Consensus 113 ~G~rv~~v~l~~d-----ds~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~~----sde~G-----~y~vgD~~~~d~~ 177 (216)
T COG3806 113 PGGRVEPVRLPTD-----DSRRVALLKIEPGRSFPDHTHVG-IERTAVLEGAF----SDENG-----EYLVGDFTLADGT 177 (216)
T ss_pred CCcceeecccCCC-----CCceeEEEEeccCcccccccccc-eEEEEEEeecc----ccCCC-----ccccCceeecCCc
Confidence 3555555543332 24589999999999999999996 99999999984 44445 5889999999999
Q ss_pred CeEEEEecCCCcEEEEEEEcCC
Q 027919 151 LVHFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 151 ~~H~~~N~g~~~a~~l~~~~s~ 172 (217)
+-|.-.-..+.+|..+++++-+
T Consensus 178 v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 178 VQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred cccccccCCCCCceEEEEcCCC
Confidence 9998766677888888887643
No 61
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.36 E-value=0.013 Score=44.18 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=47.3
Q ss_pred CCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcC--CCeEEEEecCC-CcEEEEEE
Q 027919 101 GGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPR--GLVHFQKNNGN-VPASVIAG 168 (217)
Q Consensus 101 G~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~--g~~H~~~N~g~-~~a~~l~~ 168 (217)
+...++|-|.+-+-+-||++|+++-. |+.|. ..+|++||+-.+-+ |+.|.-.|.++ ++++++-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 55678999998666678999998766 44454 56899999888776 69999999887 77777643
No 62
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.11 E-value=0.0075 Score=52.12 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=53.3
Q ss_pred CCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEc
Q 027919 69 NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFP 148 (217)
Q Consensus 69 ~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P 148 (217)
.+.|..++.+.- -|. +.++.-..+.++.|.....|+|+. .|-.|||+|++.++..+. ....+|.+|..+.-|
T Consensus 153 ~~~g~~~a~Lwg--d~~--~g~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~---~~~~~L~~GSYf~s~ 224 (251)
T PF14499_consen 153 PPPGAQIAFLWG--DPN--TGQYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGA---SNFGTLDPGSYFGSP 224 (251)
T ss_dssp TT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEE---ETTEEEEE-TT-EE-
T ss_pred CCCcceEEEEec--CCC--CCceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeeccc---CCCccccCCcccccC
Confidence 456777776653 232 113445667788888889999996 999999999999976431 124689999999999
Q ss_pred CCCeEEEEecCCCcEEEEEEEcC
Q 027919 149 RGLVHFQKNNGNVPASVIAGFNS 171 (217)
Q Consensus 149 ~g~~H~~~N~g~~~a~~l~~~~s 171 (217)
.+..|... .+++++.++.-.+.
T Consensus 225 ~~~~H~~~-~~e~~~vlyIRtdG 246 (251)
T PF14499_consen 225 GHITHGIF-ITEDECVLYIRTDG 246 (251)
T ss_dssp -E-------EESS-EEEEEEESS
T ss_pred Cccccccc-ccCCCEEEEEEECC
Confidence 99999998 77888888876543
No 63
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.89 E-value=0.043 Score=45.87 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=47.6
Q ss_pred EEEEEEcC-CCcCCCCCCCCCcEEEEEEecEEEEEEEecC--------C---------------------------eEEE
Q 027919 93 LARIDYAP-GGINPPHTHPRATEIVFVLEGQLDVGFFTTA--------N---------------------------VLVS 136 (217)
Q Consensus 93 ~~~~~l~P-G~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~--------~---------------------------~~~~ 136 (217)
...+.+.+ |...++|+.+. .-++.++.|+=++.+..+. . +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~-~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPS-HNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SS-EEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECch-hhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 34566666 45678899884 8888999999887776542 0 3457
Q ss_pred EEeCCCCEEEEcCCCeEEEEecCCCc
Q 027919 137 KSIKKGENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 137 ~~L~~GD~~~~P~g~~H~~~N~g~~~ 162 (217)
.+|+|||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984344
No 64
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.78 E-value=0.11 Score=45.57 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=53.7
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcC--CCeEEEEec--CCCcEEEEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPR--GLVHFQKNN--GNVPASVIAGF 169 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~--g~~H~~~N~--g~~~a~~l~~~ 169 (217)
..++.||...++|-|.+-+-+.||++|+++-.= +.|. ...+++||+-.+-+ |+.|.-.|. .+++...+-+.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrD--S~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRD--SLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEee--cCCc--eeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 345889999999999985666789999988773 2343 45899999988876 699999987 34466665443
No 65
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.76 E-value=0.075 Score=49.22 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred ccCCCeeeeCCCCC--CCccCCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCc-CCCCCCCCCcEEEEEEecEEEEEE
Q 027919 51 FSEMDFFSDKLAKP--AATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGI-NPPHTHPRATEIVFVLEGQLDVGF 127 (217)
Q Consensus 51 v~~~df~~~~~~~~--~~~~~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~-~p~H~Hp~a~Ei~yVl~G~~~~~~ 127 (217)
++++.+.|..+..| .++ ...-+..+... .+.|..+. |+.+...... ..+ ...-.+.+++|++++-+|++++.-
T Consensus 86 ~~p~~lrw~p~~~p~~~~~-dfvdgl~ti~g-~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~T 161 (424)
T PF04209_consen 86 PTPNQLRWDPFPIPSDEPT-DFVDGLRTIAG-AGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLET 161 (424)
T ss_dssp ---S-EEE-S----TT-----TTTTEEEEEE-ECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEE
T ss_pred CCccccccCCCCCCCcCCC-Ccccccccccc-CccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEe
Confidence 46778888876555 222 22233334333 34444332 3332222211 223 233446677999999999998875
Q ss_pred EecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 128 FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 128 ~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
. -|+ ..+++||.++||+|+.+++.-. ++++.+.+
T Consensus 162 e--~G~---L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 162 E--FGR---LDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp T--TEE---EEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred c--Cee---EEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 3 353 5799999999999999998765 56766654
No 66
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.71 E-value=0.1 Score=46.47 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=44.2
Q ss_pred EEEEEcCCC--cCCCCCCCCCcEEEEEEecEEEEEEEecC------------------CeEEEEEeCCCCEEEEcCCCeE
Q 027919 94 ARIDYAPGG--INPPHTHPRATEIVFVLEGQLDVGFFTTA------------------NVLVSKSIKKGENFVFPRGLVH 153 (217)
Q Consensus 94 ~~~~l~PG~--~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~P~g~~H 153 (217)
+.+.+.|++ ..++|+-.. +-+++=++|+=++.+.... ......+|+|||++|+|+|.+|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 445567776 688998875 7788888998888777521 0134689999999999999999
Q ss_pred EEEecC
Q 027919 154 FQKNNG 159 (217)
Q Consensus 154 ~~~N~g 159 (217)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999887
No 67
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.70 E-value=0.043 Score=46.44 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=62.1
Q ss_pred CcCCCCcCceEEEEEEEcCCCcCCC-CCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 82 TIPGLNTLGVSLARIDYAPGGINPP-HTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 82 ~~Pgl~~~gis~~~~~l~PG~~~p~-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
-.|.--.-.+.+..+.++||+.+|. -+|-- +-=+|||||+..+.++. . ...+++||.+...+-.+.+...-|.
T Consensus 173 v~P~d~r~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn~---d--wv~V~aGD~mwm~A~cpQacyagG~ 246 (264)
T COG3257 173 VLPKELRFDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLNN---N--WVPVEAGDYIWMGAYCPQACYAGGR 246 (264)
T ss_pred eCccccCcceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeecC---c--eEEeecccEEEeeccChhhhccCCC
Confidence 3444444567888999999999884 56653 55599999999999863 2 6799999999999999988887777
Q ss_pred CcEEEEE
Q 027919 161 VPASVIA 167 (217)
Q Consensus 161 ~~a~~l~ 167 (217)
...+.+.
T Consensus 247 g~frYLl 253 (264)
T COG3257 247 GAFRYLL 253 (264)
T ss_pred CceEEEE
Confidence 7666553
No 68
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.53 E-value=0.057 Score=46.74 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 106 PHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 106 ~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
+|-+.+ .++.++++|++.+.++ ++ .+.+++||++++|+|.+|.+....+
T Consensus 44 ~~~~~~-~~i~~~~~G~~~~~~~---~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMKG-YILNLTIRGQGVIFNG---GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCccc-eEEEEEEeccEEEecC---Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 455443 7899999999998865 34 6799999999999999998765443
No 69
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.49 E-value=0.079 Score=44.86 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=42.9
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEe-cEEEEEEEecC----------------CeEE------EEEeCCCCEEEEcCCC
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLE-GQLDVGFFTTA----------------NVLV------SKSIKKGENFVFPRGL 151 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~-G~~~~~~~~~~----------------~~~~------~~~L~~GD~~~~P~g~ 151 (217)
.+-+.+|...|+|.|..-.|=++.-- |.+.+.+-.+. |..+ ..+|+||+++-+++|+
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 46678999999999987677666554 57666554331 1111 4689999999999999
Q ss_pred eEEEEecCCCcEEEEE
Q 027919 152 VHFQKNNGNVPASVIA 167 (217)
Q Consensus 152 ~H~~~N~g~~~a~~l~ 167 (217)
.|+++..+.. +++.
T Consensus 171 yH~Fw~e~g~--vLig 184 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIG 184 (225)
T ss_dssp EEEEEE-TTS--EEEE
T ss_pred eeeEEecCCC--EEEE
Confidence 9999976544 4444
No 70
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.36 E-value=0.048 Score=40.14 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=32.9
Q ss_pred EEEcCCCcCCCCCCCCCc--EEEEEE--ecEEEEEEEecC------------------CeEEEEEeCCCCEEEEcCCCeE
Q 027919 96 IDYAPGGINPPHTHPRAT--EIVFVL--EGQLDVGFFTTA------------------NVLVSKSIKKGENFVFPRGLVH 153 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp~a~--Ei~yVl--~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~P~g~~H 153 (217)
....+|+..++|.|+++. =++||- ++...+.+.++. ........++||+++||+-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 445688888999998731 222321 122122222211 1234568899999999999999
Q ss_pred EEE-ecCCCcEEEEEEE
Q 027919 154 FQK-NNGNVPASVIAGF 169 (217)
Q Consensus 154 ~~~-N~g~~~a~~l~~~ 169 (217)
... |.++ .-|+..+|
T Consensus 85 ~v~p~~~~-~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSD-EERISISF 100 (101)
T ss_dssp EE----SS-S-EEEEEE
T ss_pred eccCcCCC-CCEEEEEc
Confidence 886 4444 34444333
No 71
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.27 E-value=0.18 Score=46.74 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 104 NPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 104 ~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
...-.+.+++|++++-+|++.+.-. -|+ ..+++||.++||+|+.+++.-. +++++.+++
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~-~gp~rgyi~ 204 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVELP-DGPARGYVC 204 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEecC-CCCeeEEEE
Confidence 3345566779999999999998864 354 5799999999999999987633 456666554
No 72
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.26 E-value=0.028 Score=47.23 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=47.1
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEE
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQ 155 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~ 155 (217)
.|+.....|..++ +|++|-.+|.+.+-+.++ ++....++++||++..|+.++|+-
T Consensus 41 GPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 41 GPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred CCCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCCh
Confidence 5666667898886 999999999999999874 555678999999999999999963
No 73
>PF12852 Cupin_6: Cupin
Probab=95.18 E-value=0.16 Score=41.18 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=35.8
Q ss_pred cEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEec
Q 027919 113 TEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 113 ~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
.-+.+|++|+..+.+.+. + ....|++||++++|+|..|.+...
T Consensus 36 ~~fh~V~~G~~~l~~~~~-~--~~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG-G--EPIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcCC-C--CeEEecCCCEEEEcCCCCeEeCCC
Confidence 677889999999997641 2 367999999999999999998643
No 74
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.14 E-value=0.11 Score=43.59 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=45.4
Q ss_pred EEEEEEEcCCCcCCCCCCCCC--cEEEEEE----ecEEEEEEEecC------------------CeEEEEEeCCCCEEEE
Q 027919 92 SLARIDYAPGGINPPHTHPRA--TEIVFVL----EGQLDVGFFTTA------------------NVLVSKSIKKGENFVF 147 (217)
Q Consensus 92 s~~~~~l~PG~~~p~H~Hp~a--~Ei~yVl----~G~~~~~~~~~~------------------~~~~~~~L~~GD~~~~ 147 (217)
.+....+.+|+....|.|+++ +-+.||- .|.+.+. ++. .......-++|++++|
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~--~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFE--DPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEe--cCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 345566789999999999974 2334443 2222222 110 0011234589999999
Q ss_pred cCCCeEEEE-ecCCCcEEEEEEEc
Q 027919 148 PRGLVHFQK-NNGNVPASVIAGFN 170 (217)
Q Consensus 148 P~g~~H~~~-N~g~~~a~~l~~~~ 170 (217)
|+-+.|... |.++ .-++-..|+
T Consensus 175 PS~L~H~v~p~~~~-~~RISiSFN 197 (201)
T TIGR02466 175 ESWLRHEVPPNESE-EERISVSFN 197 (201)
T ss_pred CCCCceecCCCCCC-CCEEEEEEe
Confidence 999999876 5553 344444443
No 75
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.91 E-value=0.25 Score=45.82 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=44.1
Q ss_pred CCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 106 PHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 106 ~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
.-.+.+++|++++-+|++.+.-. -|+ ..+++||.++||+|+.+++.-. +++++.+++
T Consensus 141 ~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~ 197 (435)
T PLN02658 141 AFCNADGDFLIVPQQGRLWIKTE--LGK---LQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVL 197 (435)
T ss_pred eeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEecCccEEEEecC-CCCeeEEEE
Confidence 35566779999999999998854 354 4799999999999999887643 356666543
No 76
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.59 E-value=0.29 Score=45.32 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEE
Q 027919 104 NPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 104 ~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~ 168 (217)
...-...+++|++++-+|++.+... -|+ ..+++||.++||+|+.+++.-.+ +++.+.+
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~g--p~rgyi~ 197 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLE--PARGYIC 197 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCC--CceEEEE
Confidence 3344556679999999999998864 354 57999999999999999887654 6665543
No 77
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=94.46 E-value=0.35 Score=35.65 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=43.8
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.-.+.||. .+....+.|+.-|++|++++.+.++. ..+++++|+.|.+|++.--.++.. ++..+++.|
T Consensus 27 lGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~---ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 27 LGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGED---EWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-S---S-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc---ccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 33456665 33344468999999999999997532 367999999999999987766653 566666544
No 78
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.41 E-value=0.24 Score=41.11 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=43.4
Q ss_pred EEEEEcCCCcCCCCCCCCCcE-EEEEEecEEEEEEEecC----------------CeE------EEEEeCCCCEEEEcCC
Q 027919 94 ARIDYAPGGINPPHTHPRATE-IVFVLEGQLDVGFFTTA----------------NVL------VSKSIKKGENFVFPRG 150 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~E-i~yVl~G~~~~~~~~~~----------------~~~------~~~~L~~GD~~~~P~g 150 (217)
..+.+.+|...|+|.|++-.| ++===.|++.+.+.... |+. -...|+||+++-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 356678999999999985333 22222233433332211 111 1357999999999999
Q ss_pred CeEEEEecCCC
Q 027919 151 LVHFQKNNGNV 161 (217)
Q Consensus 151 ~~H~~~N~g~~ 161 (217)
+.|+++..+..
T Consensus 169 ~~HsFwae~g~ 179 (225)
T COG3822 169 LYHSFWAEEGG 179 (225)
T ss_pred ceeeeeecCCc
Confidence 99999975433
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.26 E-value=0.23 Score=43.33 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=47.3
Q ss_pred EcCCCcCCCCCC-CCCcEEEEEEecEEEEEEEecCCe-EEEEEeCCC-CEEEEcCCCeEEEEecC
Q 027919 98 YAPGGINPPHTH-PRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKG-ENFVFPRGLVHFQKNNG 159 (217)
Q Consensus 98 l~PG~~~p~H~H-p~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~L~~G-D~~~~P~g~~H~~~N~g 159 (217)
--|++...+|.| ++..|.+.|++|++.+.+-++.+. .....+.+. +.-++|++.+|+..-.+
T Consensus 18 ~~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 18 TLPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred hchHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 346777889999 678999999999999988766654 233456664 56579999999988653
No 80
>PRK10579 hypothetical protein; Provisional
Probab=94.13 E-value=0.43 Score=35.14 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=46.8
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 97 DYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 97 ~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.+.||. .+.-..+.|+.-|++|++++.+.++ ...+++++|+.|.+|++.--.++.. +...+++.|
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~---~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~y 93 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLPGA---TDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCRY 93 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECCCC---cccEEeCCCCEEEECCCCeEEEEEC--cceeeEEEc
Confidence 345554 2333446899999999999999753 2367999999999999987766653 455555543
No 81
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.99 E-value=0.43 Score=41.34 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=46.4
Q ss_pred ceEEEEEEEcCCCcC-----CCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 90 GVSLARIDYAPGGIN-----PPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 90 gis~~~~~l~PG~~~-----p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
++.+.+++..+.... ..|.+.+...++++++|++.+..+ |+ ...+++||+++++++.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~---g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD---DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC---Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 356667776665332 134444445577789999998875 44 5689999999999999998765443
No 82
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.92 E-value=0.2 Score=40.29 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=48.1
Q ss_pred CCcCCCCc-Cc-eEEEEEEEcCCCcCCCCCCCCCcE----EEEEE-ecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeE
Q 027919 81 QTIPGLNT-LG-VSLARIDYAPGGINPPHTHPRATE----IVFVL-EGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVH 153 (217)
Q Consensus 81 ~~~Pgl~~-~g-is~~~~~l~PG~~~p~H~Hp~a~E----i~yVl-~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H 153 (217)
+++|...+ .. ..+....+.||+.+.+|.-+.... +-+++ .+...+.++ ++ .+..++|++++|.-...|
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~---~~--~~~w~~G~~~~fD~s~~H 142 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG---GE--TRHWREGECWVFDDSFEH 142 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET---TE--EEB--CTEEEEE-TTS-E
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC---Ce--EEEeccCcEEEEeCCEEE
Confidence 45555443 12 244556679999999998764222 22233 234555554 33 678999999999999999
Q ss_pred EEEecCCCcEEEEE
Q 027919 154 FQKNNGNVPASVIA 167 (217)
Q Consensus 154 ~~~N~g~~~a~~l~ 167 (217)
...|.|+++-+.+.
T Consensus 143 ~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 143 EVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEESSSS-EEEEE
T ss_pred EEEeCCCCCEEEEE
Confidence 99999876655543
No 83
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.70 E-value=0.46 Score=41.69 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred ceEEEEEEEcCCC---cCCCCCCCCCcEEEE---EEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcE
Q 027919 90 GVSLARIDYAPGG---INPPHTHPRATEIVF---VLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 163 (217)
Q Consensus 90 gis~~~~~l~PG~---~~p~H~Hp~a~Ei~y---Vl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a 163 (217)
.+-+....+.||+ ..|||.|.+..|..+ +-++...+.+.++.++.....++-+|.++.|+-.+|.- .|...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g--~gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG--VGTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC--cCcccc
Confidence 4566667778988 469999996667433 33444555555444553347899999999999999975 456677
Q ss_pred EEEEEEcCCCC
Q 027919 164 SVIAGFNSQLQ 174 (217)
Q Consensus 164 ~~l~~~~s~~p 174 (217)
.+|+...-+|-
T Consensus 252 ~fiw~m~gen~ 262 (276)
T PRK00924 252 TFIWGMAGENQ 262 (276)
T ss_pred EEEEEecccCc
Confidence 78877665553
No 84
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.19 E-value=0.27 Score=36.51 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=43.5
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEc
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFN 170 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~ 170 (217)
..+.+.||+......-++..-++||++|++.+. ++ ...+.+|+.+++..|..=.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 467888888643222223367899999997664 22 247999999999976655555553 7777766543
No 85
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.10 E-value=0.6 Score=39.08 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=58.8
Q ss_pred cCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCC----------eEEEE-------EeCCCC-EEEEcC
Q 027919 88 TLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN----------VLVSK-------SIKKGE-NFVFPR 149 (217)
Q Consensus 88 ~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~----------~~~~~-------~L~~GD-~~~~P~ 149 (217)
...+++..+-++||..+|+|=||+-.-+.-||.|++.+.--+--. +.... .-.+++ .+..|.
T Consensus 41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~ 120 (200)
T PF07847_consen 41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPT 120 (200)
T ss_pred CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccC
Confidence 335788889999999999999999666666999999876432110 00001 122333 555665
Q ss_pred --CCeEEEEecCCCcEEEEEEEcCC
Q 027919 150 --GLVHFQKNNGNVPASVIAGFNSQ 172 (217)
Q Consensus 150 --g~~H~~~N~g~~~a~~l~~~~s~ 172 (217)
|-+|.+.+.+ +++-++-++...
T Consensus 121 ~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 121 SGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred CCCeeEEEEeCC-CCeEEEEEccCC
Confidence 4899999987 899999888654
No 86
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.54 E-value=0.24 Score=36.46 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCEEEEcCCCeEEEEecCCC
Q 027919 133 VLVSKSIKKGENFVFPRGLVHFQKNNGNV 161 (217)
Q Consensus 133 ~~~~~~L~~GD~~~~P~g~~H~~~N~g~~ 161 (217)
+.+..+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 34577899999999999999999999864
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.17 E-value=0.27 Score=33.47 Aligned_cols=56 Identities=14% Similarity=0.088 Sum_probs=41.2
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 96 IDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
+++.||....++...+ .+ +.|.+|++-++..+ ...-+.|++||.+.+++|..=...
T Consensus 2 ~~L~~g~~~~lr~~~~-~~-l~v~~G~vWlT~~g---~~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-QR-LRVESGRVWLTREG---DPDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EEeCCCceEEeEcCCC-cE-EEEccccEEEECCC---CCCCEEECCCCEEEeCCCCEEEEE
Confidence 4567887776665543 44 99999999888754 334579999999999998765444
No 88
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=91.69 E-value=1 Score=36.46 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=27.3
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEE
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLD 124 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~ 124 (217)
+++..+++.||...|+|-|-- .-++=|+.|.-+
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~ 105 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLM-WGLVGILWGGET 105 (191)
T ss_pred EEEEEEEeCCCcccCCcccch-heeeeeeecccc
Confidence 578899999999999999974 777778887643
No 89
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.63 E-value=2.4 Score=32.90 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=43.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
+.+.++.....-.+...-+.+.--+.+.++|+..+..+ ++ ...+.+||+++++.+.++.+...++
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~---g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG---GR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC---CE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 45666665543332221122235567788899988865 34 6799999999999999998776543
No 90
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=91.15 E-value=1.5 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCCcEEEEEEecEEEEEEEecCCe--EEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 110 PRATEIVFVLEGQLDVGFFTTANV--LVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 110 p~a~Ei~yVl~G~~~~~~~~~~~~--~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
.+.-..+.|++|++.+..-++.+. .....+.+|+..++++..+|++.-.++
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 344566889999999998875431 235689999999999999999987764
No 91
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.79 E-value=1.8 Score=39.82 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=40.9
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
.+.+.++++..+.. +......++++|++|++++... +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKG---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeC---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 35666777655422 2222347999999999998642 33 568999999999998766544
No 92
>PLN02288 mannose-6-phosphate isomerase
Probab=90.70 E-value=0.84 Score=42.09 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=40.8
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCC
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGL 151 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~ 151 (217)
.+++.++++.++.......+. ..++++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~-gp~Illv~~G~~~i~~~---~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVP-GPSVFLVIEGEGVLSTG---SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCC-CCEEEEEEcCEEEEecC---CccceEEEeceeEEEEeCCC
Confidence 467788888877543222244 48999999999998643 22123579999999999864
No 93
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.35 E-value=4.1 Score=37.06 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE
Q 027919 105 PPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 105 p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
..-...+.+|++++-+|++++..+- | ...+++||..+||+|+..+.+-.+.+ ++.+.
T Consensus 139 ~~f~NADge~Livpq~G~l~l~te~--G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 139 RFFRNADGELLIVPQQGELRLKTEL--G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred hhhhcCCCCEEEEeecceEEEEEee--c---eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 3455667799999999999887542 4 46899999999999999988876444 45443
No 94
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=0.19 Score=47.17 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=43.2
Q ss_pred cCCC-cCCCCCCCCCcEEEEEEecEEEEEEEecC-------------------Ce-EEEEEeCCCCEEEEcCCCeEEEEe
Q 027919 99 APGG-INPPHTHPRATEIVFVLEGQLDVGFFTTA-------------------NV-LVSKSIKKGENFVFPRGLVHFQKN 157 (217)
Q Consensus 99 ~PG~-~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-------------------~~-~~~~~L~~GD~~~~P~g~~H~~~N 157 (217)
+||+ ..+|||-.- +-+++-++|+=.+.+-.+. |+ +....|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4554 478999874 6677789998776654331 11 234689999999999999998765
Q ss_pred cC
Q 027919 158 NG 159 (217)
Q Consensus 158 ~g 159 (217)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 43
No 95
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=0.75 Score=41.83 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=45.9
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCC-----------------eEEEEEeCCCCEEEEcCCCeEEEEec
Q 027919 97 DYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN-----------------VLVSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 97 ~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
-.++||.+.+|+-+. +-+++=..|+=+..++...+ -....+|.|||++|+|+|.+|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 457889999999987 77777777777777764311 01135799999999999999987765
No 96
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=89.04 E-value=3.2 Score=36.60 Aligned_cols=60 Identities=25% Similarity=0.208 Sum_probs=41.8
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
..+.+.++++..... ...+. ...+++|++|++++... +. ...|++|+++++|++.-....
T Consensus 233 ~~F~~~~~~~~~~~~--~~~~~-~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAE--FIQQQ-SALILSVLEGSGRIKSG---GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCcee--eccCC-CcEEEEEEcceEEEEEC---CE--EEEEecccEEEEccCCccEEE
Confidence 356777777754321 11233 58899999999998642 33 568999999999998865444
No 97
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=87.20 E-value=3.1 Score=37.94 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=49.3
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVI 166 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l 166 (217)
.+.+.++++++|...-.-.-++ .-++.|++|+.++...+ +. ...+++||+++||+...-.+. ..+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~~-~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~-~~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVDG-PSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLS-SSSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecCCC-ceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceee-ccCcceeee
Confidence 4577888888876533333343 88999999999998763 22 568999999999998665443 334444443
No 98
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=86.16 E-value=15 Score=28.93 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=52.7
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEec-EEEEEEEecCCeEEEEEeCC----CC--EEEEcCCCeEEEEecCCCcE
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEG-QLDVGFFTTANVLVSKSIKK----GE--NFVFPRGLVHFQKNNGNVPA 163 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~L~~----GD--~~~~P~g~~H~~~N~g~~~a 163 (217)
.+....-+.++....+|.= +++|+++-..| .+++.+.+++|+....+|.. |+ .+++|+|.+...+..+...-
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y 119 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGDY 119 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSSE
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCCE
Confidence 3455555777777766654 46999999998 68999998888766667744 43 68899999988765444555
Q ss_pred EEEEE
Q 027919 164 SVIAG 168 (217)
Q Consensus 164 ~~l~~ 168 (217)
.+++.
T Consensus 120 ~Lvsc 124 (139)
T PF06172_consen 120 SLVSC 124 (139)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 99
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=86.16 E-value=8.3 Score=32.21 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=50.1
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
+.......+++|..+-..=.+ ...+++|++|.+.+...+++|+. ....+.+||++-+..+.++.....-.++++++.
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 345667888998865333233 47888999999999887666653 344568999887666554433333345555554
No 100
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.47 E-value=3.1 Score=30.11 Aligned_cols=42 Identities=24% Similarity=0.118 Sum_probs=34.2
Q ss_pred CCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEE
Q 027919 111 RATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQ 155 (217)
Q Consensus 111 ~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~ 155 (217)
.+.|+..|+.|.+++.+.++ ...++..+|+.+.+|.+.-..+
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs---~dWq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS---DDWQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC---cccEEecCCceEEcCCCCeEEE
Confidence 35899999999999999764 2377999999999999755433
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.41 E-value=2.2 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=33.1
Q ss_pred EEcCCCcC-CCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEE
Q 027919 97 DYAPGGIN-PPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENF 145 (217)
Q Consensus 97 ~l~PG~~~-p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~ 145 (217)
++++|..+ ..+-+ ...+++|++|.+.+...+.+++. ....+.+||.+
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 45666543 22322 48999999999999998766653 24678888876
No 102
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=84.71 E-value=2.3 Score=36.07 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=57.0
Q ss_pred CcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcce--ecchhhhcCCCC
Q 027919 112 ATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQ--NIALTLFASTPP 189 (217)
Q Consensus 112 a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~--~~~~~~f~~~~~ 189 (217)
++...+|++|+...... |+....+.+|||..+.++|......-.. .+-++.--..--|-.. .+++.+|++
T Consensus 119 ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~--~tw~LEY~RG~IP~~lpf~~~dt~~sT--- 190 (216)
T PF04622_consen 119 ADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPP--GTWALEYGRGWIPSMLPFGFADTLFST--- 190 (216)
T ss_pred eeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCC--CeEEEEecCCchhhhhHHHHHHHHHhc---
Confidence 57889999999988765 4445678999999999999998777553 3333333222233222 233556663
Q ss_pred CCHHHHHHHcCCCHHHH
Q 027919 190 VADNVLTKTFQIGTKEV 206 (217)
Q Consensus 190 ~p~~vla~af~~~~~~v 206 (217)
++-..+-++..+..+++
T Consensus 191 lDf~t~~~T~~~~~~~m 207 (216)
T PF04622_consen 191 LDFPTLYRTVYITAREM 207 (216)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 67667777776654443
No 103
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=83.99 E-value=12 Score=30.23 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=45.5
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCe-EEEEEeCCCCEEEEc----CCCeEEEEecCCCcEEEEEE
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKGENFVFP----RGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~~~P----~g~~H~~~N~g~~~a~~l~~ 168 (217)
....+++|..+-..=.+ ...+++|++|.+.+...+.+|+ .....+.+||.+-.. ....+...-...+++.++.+
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 45678888765333233 4789999999999987765554 334578999987432 22233222223455666553
No 104
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=83.04 E-value=8.2 Score=31.25 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=54.1
Q ss_pred ceEEEEEEEc--CCCcCCCCCCCCCcEEEEEEecEEEEEEEecC-----CeEEEEEeCCCCEEEEcCCCeEEEEecCCCc
Q 027919 90 GVSLARIDYA--PGGINPPHTHPRATEIVFVLEGQLDVGFFTTA-----NVLVSKSIKKGENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 90 gis~~~~~l~--PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~-----~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 162 (217)
++++.|..-. |-....+-.|+..+|.++-+.|+-.+.++.++ ++......++|+.+.+-+|++|.-.-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 4555555422 22233456788789999999999887777643 2456789999999999999999654333445
Q ss_pred EEEEEE
Q 027919 163 ASVIAG 168 (217)
Q Consensus 163 a~~l~~ 168 (217)
..++++
T Consensus 135 ~dF~vv 140 (162)
T PRK03606 135 SDFLVV 140 (162)
T ss_pred ceEEEE
Confidence 666544
No 105
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=80.51 E-value=9 Score=30.89 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=46.3
Q ss_pred ceEEEEEEEcCCC--cCCCCCCCCCcEEEEEEecEE-EEEEEecC------CeEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 90 GVSLARIDYAPGG--INPPHTHPRATEIVFVLEGQL-DVGFFTTA------NVLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 90 gis~~~~~l~PG~--~~p~H~Hp~a~Ei~yVl~G~~-~~~~~~~~------~~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
++++.+..-.+.. +.-+-.|+..+|.++-+.|+. .+.++..+ ++.....+.+|+.+.+.+|++|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4555555333222 223456777899999999988 44444333 35667899999999999999997654445
Q ss_pred CcEEEEEEEcC
Q 027919 161 VPASVIAGFNS 171 (217)
Q Consensus 161 ~~a~~l~~~~s 171 (217)
+++.++++-..
T Consensus 136 ~~~~f~vv~~~ 146 (165)
T PF04115_consen 136 EPADFLVVDRI 146 (165)
T ss_dssp SEEEEEEEEEE
T ss_pred CcceEEEEeCC
Confidence 77777766433
No 106
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=79.73 E-value=11 Score=32.79 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=49.2
Q ss_pred eEEEEecCCcCCCCcCceEEEEEEEcCCC---cCCCCCCCCC--------cEEEEE-Ee---cEEEEEEEec-CCeEEEE
Q 027919 74 TVTAANVQTIPGLNTLGVSLARIDYAPGG---INPPHTHPRA--------TEIVFV-LE---GQLDVGFFTT-ANVLVSK 137 (217)
Q Consensus 74 ~v~~~~~~~~Pgl~~~gis~~~~~l~PG~---~~p~H~Hp~a--------~Ei~yV-l~---G~~~~~~~~~-~~~~~~~ 137 (217)
.|......+.+.. -.+-+.++. .|++ .-|||.|.+. +|+.|- +. |-+...+-+. .......
T Consensus 136 ~V~~~i~~~~~~~--~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~ 212 (261)
T PF04962_consen 136 TVRNIIDPNVPPA--SRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY 212 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred EEEEeeCCCCccc--ceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence 4444444444422 234555555 5554 4699999862 455443 22 3222122111 1123467
Q ss_pred EeCCCCEEEEcCCCeEEEEe-cCCCcEEEEEEEcCCC
Q 027919 138 SIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQL 173 (217)
Q Consensus 138 ~L~~GD~~~~P~g~~H~~~N-~g~~~a~~l~~~~s~~ 173 (217)
.++-||++.+|.| .|.+.. +| ...-++++....+
T Consensus 213 ~V~~~d~V~iP~g-yHp~~aapG-y~~Yylw~maG~~ 247 (261)
T PF04962_consen 213 VVRNGDAVLIPSG-YHPVVAAPG-YDMYYLWVMAGEN 247 (261)
T ss_dssp EEETTEEEEESTT-B-SEEEEEE-SSEEEEEEEESSS
T ss_pred EEECCCEEEeCCC-CCCcCcCCC-cCcEEEEEEEcCC
Confidence 8999999999999 344443 44 4445888877766
No 107
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=79.50 E-value=16 Score=32.67 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=31.8
Q ss_pred CcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEE
Q 027919 112 ATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHF 154 (217)
Q Consensus 112 a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~ 154 (217)
...+++|++|++++... + .+..|++|+++++|+...-+
T Consensus 260 ~~~il~v~eG~~~l~~~---~--~~~~l~~G~s~~ipa~~~~~ 297 (312)
T COG1482 260 SFSILLVLEGEGTLIGG---G--QTLKLKKGESFFIPANDGPY 297 (312)
T ss_pred CcEEEEEEcCeEEEecC---C--EEEEEcCCcEEEEEcCCCcE
Confidence 58999999999999865 3 37799999999999985443
No 108
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=79.07 E-value=16 Score=32.10 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=38.3
Q ss_pred CcEE-EEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEe--cCCCcEEEEEEE
Q 027919 112 ATEI-VFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN--NGNVPASVIAGF 169 (217)
Q Consensus 112 a~Ei-~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N--~g~~~a~~l~~~ 169 (217)
..|+ ++.+.|++++.++ |+ ++.|.+.|++++|+|..-.... ....++++...-
T Consensus 73 rrE~giV~lgG~~~V~vd---G~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~s 128 (276)
T PRK00924 73 RRELGIINIGGAGTVTVD---GE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYLNS 128 (276)
T ss_pred CcEEEEEEccceEEEEEC---CE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEc
Confidence 3665 6688899999976 44 5579999999999997755553 234567776543
No 109
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=78.52 E-value=9.2 Score=30.77 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.1
Q ss_pred EEEEEcCCCcCCCCCCC-CCcEEEEEEecEEEEEEEecCCeEE-EEEeCCCCEEEE
Q 027919 94 ARIDYAPGGINPPHTHP-RATEIVFVLEGQLDVGFFTTANVLV-SKSIKKGENFVF 147 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~~-~~~L~~GD~~~~ 147 (217)
....+++|...-.-=-+ ....+++|++|.+.+...+++|+.. ...+.+||++=.
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 34567777654222121 2367899999999999887777643 345699998744
No 110
>PHA02984 hypothetical protein; Provisional
Probab=76.84 E-value=17 Score=31.80 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=40.0
Q ss_pred cEE--EEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE
Q 027919 113 TEI--VFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA 167 (217)
Q Consensus 113 ~Ei--~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~ 167 (217)
.|. +.+++|+..+.... .++..+..+++||.|.+.-+.-|..... +...++++
T Consensus 92 nEy~FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~V 146 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLAV 146 (286)
T ss_pred ccEEEEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEeC-CCceEEEE
Confidence 454 45778999988875 3555788999999999999999988743 45555554
No 111
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.62 E-value=2.9 Score=30.84 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=8.0
Q ss_pred CcchhHHHHHHHHHHH
Q 027919 1 MAAAGALTLFVVTVAV 16 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (217)
|| ++.|||+.+++++
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 77 5655555544333
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=75.28 E-value=15 Score=31.97 Aligned_cols=70 Identities=14% Similarity=0.072 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCC--------CEEEEcCCCeEEEEecCCCc
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKG--------ENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~G--------D~~~~P~g~~H~~~N~g~~~ 162 (217)
+.+..+++++|.....-...+ +-.++.|+|++++.++ |+ ....+..- |++++|+|..-.+...++
T Consensus 27 ~~~~~l~L~~g~~~~~~~~~~-E~~vv~l~G~~~v~~~---g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-- 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELERR-ELGVVNLGGKATVTVD---GE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD-- 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCCSE-EEEEEEESSSEEEEET---TE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST--
T ss_pred cceEEEEecCCCEEeccCCCc-EEEEEEeCCEEEEEeC---Cc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC--
Confidence 355678889988665544332 4456688999999985 32 24566666 999999999877777544
Q ss_pred EEEEE
Q 027919 163 ASVIA 167 (217)
Q Consensus 163 a~~l~ 167 (217)
+++..
T Consensus 100 ae~~~ 104 (261)
T PF04962_consen 100 AEFAV 104 (261)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 55553
No 113
>PLN02868 acyl-CoA thioesterase family protein
Probab=74.78 E-value=12 Score=34.41 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEE
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVF 147 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~ 147 (217)
....+++|..+-.-=.+ ...+++|++|++++...+++++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 34677888765322233 478999999999998876656555667899998863
No 114
>PHA02890 hypothetical protein; Provisional
Probab=74.14 E-value=27 Score=30.44 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=41.9
Q ss_pred cEEE--EEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEE-EEcCCCC
Q 027919 113 TEIV--FVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIA-GFNSQLQ 174 (217)
Q Consensus 113 ~Ei~--yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~-~~~s~~p 174 (217)
.|.+ .+++|+..+.... +++..+..+++||.|.+.-+.-|.... ....+++ .+.+.-|
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 4554 4788999988764 356678899999999999999999875 4455444 3444333
No 115
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=70.85 E-value=40 Score=29.16 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=49.3
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC----C-eEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 91 VSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA----N-VLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 91 is~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~----~-~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
+.+..+++.+|.....-.-.+ +-++++++|++++...++. | |.-.+.=++-|++++|.|..-.....++
T Consensus 29 VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 29 VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 356677899998877766654 6778889999999876532 2 2222344567999999999887776543
No 116
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=70.36 E-value=21 Score=24.68 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=35.3
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCe-EEEEEeCCCCEEEE
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKGENFVF 147 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~L~~GD~~~~ 147 (217)
....+.+|...-..-.+ ...+.+|++|.+.+...+++|+ .....+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 34567787754222222 3789999999999988765543 34567888887633
No 117
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=69.91 E-value=5.4 Score=28.50 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=38.6
Q ss_pred EEEcCCCcCCCCCCC---CCcEEEEE--Ee--------cEEEEEEEe-cCCeEEEEE-----eCCCCEEEEcC-CCeEEE
Q 027919 96 IDYAPGGINPPHTHP---RATEIVFV--LE--------GQLDVGFFT-TANVLVSKS-----IKKGENFVFPR-GLVHFQ 155 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp---~a~Ei~yV--l~--------G~~~~~~~~-~~~~~~~~~-----L~~GD~~~~P~-g~~H~~ 155 (217)
....+|+...||+.. ....+-++ |. |++++.-.. ..+...... .++|++++|+. ..+|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 345788888888876 32333333 33 333333100 011112223 88999999999 999998
Q ss_pred EecCCCcEEEE
Q 027919 156 KNNGNVPASVI 166 (217)
Q Consensus 156 ~N~g~~~a~~l 166 (217)
.-.+.+..++.
T Consensus 84 ~~v~~~~~R~~ 94 (100)
T PF13640_consen 84 TPVGEGGRRYS 94 (100)
T ss_dssp EEE-EESEEEE
T ss_pred cccCCCCCEEE
Confidence 86633444443
No 118
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=69.05 E-value=17 Score=32.00 Aligned_cols=46 Identities=2% Similarity=-0.023 Sum_probs=37.4
Q ss_pred cEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCc
Q 027919 113 TEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 113 ~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 162 (217)
.=++++.+|.+++.-.+ ++ ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~--g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS--GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC--Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 56789999999988542 33 568999999999999999999876444
No 119
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=68.36 E-value=3 Score=36.77 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.1
Q ss_pred EEEeCCCCEEEEcCCCeEEE
Q 027919 136 SKSIKKGENFVFPRGLVHFQ 155 (217)
Q Consensus 136 ~~~L~~GD~~~~P~g~~H~~ 155 (217)
...+++||++++|+|.+|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred ccccCCCCEEEeCCCCcccc
Confidence 56899999999999999983
No 120
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=67.56 E-value=5 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEeCCCCEEEEcCCCeEEEE
Q 027919 136 SKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 136 ~~~L~~GD~~~~P~g~~H~~~ 156 (217)
...|+|||.+++|+|.+|.+.
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 568999999999999999865
No 121
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=67.23 E-value=6 Score=36.40 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=19.5
Q ss_pred EEEEeCCCCEEEEcCCCeEEEE
Q 027919 135 VSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 135 ~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
....|+|||.+++|+|.+|.+.
T Consensus 237 N~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEc
Confidence 3578999999999999999865
No 122
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=65.91 E-value=36 Score=27.79 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=47.1
Q ss_pred CCCCCCCCcEEEEEEec-EEEEEEEecC-----CeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEE
Q 027919 105 PPHTHPRATEIVFVLEG-QLDVGFFTTA-----NVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGF 169 (217)
Q Consensus 105 p~H~Hp~a~Ei~yVl~G-~~~~~~~~~~-----~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~ 169 (217)
.+-.|+..++.++-+.| ...+.++.+. +....+...+|+.+.+-+|++|.-.-.=+.+..++++-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 34567777898888988 6666665432 24567899999999999999998664444556666654
No 123
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=65.76 E-value=37 Score=23.43 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=36.1
Q ss_pred EEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCC-eEEEEEeCCCCEEEEc
Q 027919 94 ARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN-VLVSKSIKKGENFVFP 148 (217)
Q Consensus 94 ~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~-~~~~~~L~~GD~~~~P 148 (217)
....+.+|... .+.......+.+|++|.+.+...+.+| +.....+.+||.+-..
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 34667888765 233333578999999999988764444 3345678899877443
No 124
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=65.31 E-value=10 Score=34.19 Aligned_cols=45 Identities=18% Similarity=0.003 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCEEEEcCCCeEEEEecCCCcEEEEEEEcCCCCcce
Q 027919 133 VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQ 177 (217)
Q Consensus 133 ~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~~l~~~~s~~pg~~ 177 (217)
+..+-..+||+.+++|.|-+|-+.|...+-|+---..+..|.+++
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 344678999999999999999999986554443333444555544
No 125
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=64.28 E-value=30 Score=29.88 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=54.3
Q ss_pred ceEEEEEEEcCCCc---CCCCCCCCCcEEEEEE---ecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcE
Q 027919 90 GVSLARIDYAPGGI---NPPHTHPRATEIVFVL---EGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPA 163 (217)
Q Consensus 90 gis~~~~~l~PG~~---~p~H~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a 163 (217)
.+++....++||.. .|.|.|.+..|..+-. +-+-.+.+-++.++.....++--+.++-|+-.+|.- .|...-
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG--~GT~~Y 253 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSG--VGTANY 253 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecC--ccccce
Confidence 34566678999985 6899999878864422 233344444444444455677778888888888864 355666
Q ss_pred EEEEEEcCCCC
Q 027919 164 SVIAGFNSQLQ 174 (217)
Q Consensus 164 ~~l~~~~s~~p 174 (217)
.+++....+|-
T Consensus 254 tFIWaMaGeN~ 264 (278)
T COG3717 254 TFIWAMAGENQ 264 (278)
T ss_pred EEEEEeccccc
Confidence 77777655543
No 126
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=63.25 E-value=73 Score=25.14 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCCCCCCcEEEEEEecEEEEEEEecCC------------------eEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 105 PPHTHPRATEIVFVLEGQLDVGFFTTAN------------------VLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 105 p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~------------------~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
.+-.|.+-..+-|+++|+-.+++....+ ......|++|+.++|-++..|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4455666689999999998877654210 112568999999999999999865
No 127
>PHA00672 hypothetical protein
Probab=62.24 E-value=50 Score=25.82 Aligned_cols=66 Identities=12% Similarity=0.032 Sum_probs=50.0
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCc
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVP 162 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~ 162 (217)
|+....+.++.|....--.|. -|-+++.+|.+++..++ + .+.|+.=.++.-|+|.-.....-.|+.
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdg---e--~~rl~g~~~i~~~aG~KragyAHeDT~ 111 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGG---E--AVELRGYHVIPASAGRKQAFVAHADTD 111 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCC---c--EEEEecceeeecCCCcccceeeeccce
Confidence 889999999999876666664 45569999999999863 3 567888888888888776666544443
No 128
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=61.43 E-value=68 Score=25.75 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCCCCCCCCcEEEEEEecEEEEEEEecCC--------------------eEEEEEeCCCCEEEEcCCCeEEEEecCC
Q 027919 104 NPPHTHPRATEIVFVLEGQLDVGFFTTAN--------------------VLVSKSIKKGENFVFPRGLVHFQKNNGN 160 (217)
Q Consensus 104 ~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~--------------------~~~~~~L~~GD~~~~P~g~~H~~~N~g~ 160 (217)
.-+-.|.+--++-++++|+=.+.+....+ .....+|.+|+..+|=+|.+|+-.-...
T Consensus 61 ~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 61 KKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred cchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 33455555689999999987776654321 1246789999999999999998664433
No 129
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=61.36 E-value=44 Score=27.59 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=43.5
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEc---CCCeEEEEecCCCcEEEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFP---RGLVHFQKNNGNVPASVIAG 168 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P---~g~~H~~~N~g~~~a~~l~~ 168 (217)
...+++|...- +-......+++|++|.+.+.....+++.....+.+||.+-.. .+.++...-...+++.++.+
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 45677777543 233335789999999999887654444455678899976432 12233222223455555543
No 130
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=60.59 E-value=32 Score=28.41 Aligned_cols=52 Identities=2% Similarity=-0.070 Sum_probs=36.1
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEEEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENFVF 147 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~ 147 (217)
...+++|...-.. ......+.+|++|.+.+...+++|+. ....+.+||++-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 4567777754222 22247899999999999988766653 3456889998754
No 131
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=58.81 E-value=38 Score=26.66 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=37.7
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEEEEcC
Q 027919 93 LARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENFVFPR 149 (217)
Q Consensus 93 ~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~P~ 149 (217)
.....+++|...-..--+ +.-+.+|++|.+.+....++|+. ....+.+||.+-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 345566777544333333 35588899999999998876653 334688999886654
No 132
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=57.05 E-value=46 Score=27.41 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=34.4
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEEEE
Q 027919 96 IDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENFVF 147 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~~~ 147 (217)
..+++|...-.- -.....+.+|++|.+.+...+++|+. ....+.+||++-.
T Consensus 40 ~~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECC-CCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 457777654222 22247789999999999988766654 3334689998853
No 133
>COG1741 Pirin-related protein [General function prediction only]
Probab=54.65 E-value=1.5e+02 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.1
Q ss_pred cCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEE
Q 027919 83 IPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVG 126 (217)
Q Consensus 83 ~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~ 126 (217)
.|--... +.+..+.+++|.....+ =.+-.-++||++|++++.
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 3444444 67778888899877666 223366899999988775
No 134
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=53.79 E-value=56 Score=25.48 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEE----ecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEe
Q 027919 84 PGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVL----EGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN 157 (217)
Q Consensus 84 Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N 157 (217)
|+++.. ....+.+++|....- -. ..|+..++ +|++.+++.++.+. .++|||.+.+-.|..-.+++
T Consensus 12 P~~kN~--~v~fIvl~~g~~tkT--kd-g~~v~~~kVaD~TgsI~isvW~e~~~----~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLKNI--NVTFIVLEYGRATKT--KD-GHEVRSCKVADETGSINISVWDEEGC----LIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhhcc--eEEEEEEeeceeeec--cC-CCEEEEEEEecccceEEEEEecCcCc----ccCCccEEEecccchhhhcC
Confidence 566644 666777777764322 12 25655544 47788888764443 79999999999987776654
No 135
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.42 E-value=32 Score=27.22 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=27.1
Q ss_pred CcEEEEEEecEEEEEEEecCCeEE-EEEeCCCCEEE
Q 027919 112 ATEIVFVLEGQLDVGFFTTANVLV-SKSIKKGENFV 146 (217)
Q Consensus 112 a~Ei~yVl~G~~~~~~~~~~~~~~-~~~L~~GD~~~ 146 (217)
...+++|++|.+.+...+++|+.. ...+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 467889999999998877666533 46789999774
No 136
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=51.70 E-value=62 Score=25.44 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=47.2
Q ss_pred ceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEe---cCCCcEEEE
Q 027919 90 GVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN---NGNVPASVI 166 (217)
Q Consensus 90 gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N---~g~~~a~~l 166 (217)
|+++.|.+-+- ... |.-.. .-+.+|++|+=++.+++ + .+...+|+.++.+.+++=...- ..++|...+
T Consensus 5 gl~i~r~~~~~-~~~--~~~y~-p~i~~vlQG~K~~~~g~---~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l 75 (155)
T PF06719_consen 5 GLSIFRSSRPT-PPM--PCVYE-PSICIVLQGSKRVHLGD---Q--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLAL 75 (155)
T ss_pred CEEEEEECCCC-CCc--ceecC-CeEEEEEeeeEEEEECC---c--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEE
Confidence 45666655322 222 32222 66899999999999874 3 6799999999999998875543 345666666
Q ss_pred EE
Q 027919 167 AG 168 (217)
Q Consensus 167 ~~ 168 (217)
.+
T Consensus 76 ~l 77 (155)
T PF06719_consen 76 SL 77 (155)
T ss_pred EE
Confidence 53
No 137
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.08 E-value=7.5 Score=32.96 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=31.1
Q ss_pred CceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEE
Q 027919 89 LGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVG 126 (217)
Q Consensus 89 ~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~ 126 (217)
-++|+..+-++|++++|.|-||+-.-+.=++=|++.+-
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVk 110 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVK 110 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEee
Confidence 36688889999999999999998666666777888764
No 138
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=50.53 E-value=90 Score=24.23 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=18.9
Q ss_pred CCCCCCCCCcEEEEEEecEEEEEEE
Q 027919 104 NPPHTHPRATEIVFVLEGQLDVGFF 128 (217)
Q Consensus 104 ~p~H~Hp~a~Ei~yVl~G~~~~~~~ 128 (217)
..+-.|.+-..+-|+++|+=.+++.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEe
Confidence 3445565568999999999888874
No 139
>PLN02288 mannose-6-phosphate isomerase
Probab=50.10 E-value=13 Score=34.42 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=18.9
Q ss_pred EEEeCCCCEEEEcCCCeEEEE
Q 027919 136 SKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 136 ~~~L~~GD~~~~P~g~~H~~~ 156 (217)
...|+|||.+++|+|.+|.+.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 468999999999999999865
No 140
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=48.58 E-value=22 Score=35.71 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=48.7
Q ss_pred EEEEEcCCCcCCC-CCCCCCcEEEEEEecEEE----------------EEEEecCCeEEEEEeCCCCEEEEcCCCeEEEE
Q 027919 94 ARIDYAPGGINPP-HTHPRATEIVFVLEGQLD----------------VGFFTTANVLVSKSIKKGENFVFPRGLVHFQK 156 (217)
Q Consensus 94 ~~~~l~PG~~~p~-H~Hp~a~Ei~yVl~G~~~----------------~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~ 156 (217)
....+.+|+...| |.+.+ .-++|.+.++-. +-|++...+-+.-.|++|+.++||.|.+|...
T Consensus 139 tdfhidfggtsvwyhil~G-~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 139 TDFHIDFGGTSVWYHILAG-EKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred cccccCCCCcchhhhhhcc-ccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeee
Confidence 3455667776554 88876 778887777533 12222223445678999999999999999988
Q ss_pred ecCCCcEEEEEEE
Q 027919 157 NNGNVPASVIAGF 169 (217)
Q Consensus 157 N~g~~~a~~l~~~ 169 (217)
-+.+.-+...-.+
T Consensus 218 Tp~d~l~fgGnfl 230 (776)
T KOG1633|consen 218 TPTDCLVFGGNFL 230 (776)
T ss_pred cCcchheeccchh
Confidence 7654444333333
No 141
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=48.38 E-value=96 Score=24.28 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=36.0
Q ss_pred ceEEEEEEEcCCC--cCCCCCCCCCcEEEEEEecEEEEEEE-ecC-------------------C-eEEEEEeCCCCEEE
Q 027919 90 GVSLARIDYAPGG--INPPHTHPRATEIVFVLEGQLDVGFF-TTA-------------------N-VLVSKSIKKGENFV 146 (217)
Q Consensus 90 gis~~~~~l~PG~--~~p~H~Hp~a~Ei~yVl~G~~~~~~~-~~~-------------------~-~~~~~~L~~GD~~~ 146 (217)
++.+...+..... ...+-.|.+--.+-|+++|+=.+++. ... + ......|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 3444444444333 23455677678999999999888873 211 0 11245799999999
Q ss_pred EcCCCeEEEE
Q 027919 147 FPRGLVHFQK 156 (217)
Q Consensus 147 ~P~g~~H~~~ 156 (217)
|-++.+|.-.
T Consensus 125 ffP~d~H~p~ 134 (153)
T PF04074_consen 125 FFPEDAHRPG 134 (153)
T ss_dssp E-TT--EEEE
T ss_pred ECCCcccccc
Confidence 9999999844
No 142
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=48.08 E-value=40 Score=22.23 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=20.5
Q ss_pred EEEEEecCCeEEEEEeCCCCEEEEcCCCeE
Q 027919 124 DVGFFTTANVLVSKSIKKGENFVFPRGLVH 153 (217)
Q Consensus 124 ~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H 153 (217)
++++.++.++.++.+|++|..+.--+|.++
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~ 40 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIR 40 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEE
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccc
Confidence 577778888889999999999988887654
No 143
>PF13994 PgaD: PgaD-like protein
Probab=46.54 E-value=25 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.652 Sum_probs=22.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 189 PVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 189 ~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
+++++-+|+.|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999999874
No 144
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=45.18 E-value=25 Score=27.63 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 188 PPVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 188 ~~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
|.++++-||+.|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 5799999999999999999999874
No 145
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=42.38 E-value=32 Score=27.65 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 188 PPVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 188 ~~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
|.+++|-+|+.|+++++.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4699999999999999999999874
No 146
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=41.54 E-value=38 Score=22.22 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=17.0
Q ss_pred hccCCCCCccEEee-cCCCCccccCccccc
Q 027919 21 AAADPEMLQDVCVA-DLTSPIKVNGFPCKA 49 (217)
Q Consensus 21 ~~~d~~~~~dfcva-~~~~~~~~~g~~ck~ 49 (217)
..+.|--+.-=||+ |......+|=-||-.
T Consensus 21 tpsapyeikspcvs~didd~s~ls~npcir 50 (60)
T PF10913_consen 21 TPSAPYEIKSPCVSADIDDNSSLSVNPCIR 50 (60)
T ss_pred CCCCCccccCCccccccCCCcccccccccc
Confidence 34555567778998 444333444448875
No 147
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=41.27 E-value=61 Score=32.57 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=33.7
Q ss_pred EEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEE
Q 027919 93 LARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145 (217)
Q Consensus 93 ~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 145 (217)
+....++||..+-.-=.. ..++.+|++|++.+......++.....+++||.+
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 344567888754322223 4789999999999865322223334679999977
No 148
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=40.83 E-value=16 Score=33.48 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=39.5
Q ss_pred CCcCCCC---CCCCCcEEEEEEecEEEEEEEecCC-------------------------eEEEEEeCCCCEEEEcCCCe
Q 027919 101 GGINPPH---THPRATEIVFVLEGQLDVGFFTTAN-------------------------VLVSKSIKKGENFVFPRGLV 152 (217)
Q Consensus 101 G~~~p~H---~Hp~a~Ei~yVl~G~~~~~~~~~~~-------------------------~~~~~~L~~GD~~~~P~g~~ 152 (217)
|.-.|.| +|. .-+-..+-|.=+.-+..+.. +..+..=+||+.+++|.|-.
T Consensus 208 gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW~ 285 (427)
T KOG2131|consen 208 GSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGWH 285 (427)
T ss_pred CCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCccc
Confidence 4456777 553 45566677766655543211 11233457999999999999
Q ss_pred EEEEecCCC
Q 027919 153 HFQKNNGNV 161 (217)
Q Consensus 153 H~~~N~g~~ 161 (217)
|...|.+++
T Consensus 286 hQV~NL~dT 294 (427)
T KOG2131|consen 286 HQVLNLGDT 294 (427)
T ss_pred cccccccce
Confidence 999999875
No 149
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=39.64 E-value=52 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEeCCCCEEEEcCCCeEEEE-ecCCC
Q 027919 135 VSKSIKKGENFVFPRGLVHFQK-NNGNV 161 (217)
Q Consensus 135 ~~~~L~~GD~~~~P~g~~H~~~-N~g~~ 161 (217)
....+++||++++...++|.-. |.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 4567999999999999999765 55544
No 150
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=38.36 E-value=32 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=17.1
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhc
Q 027919 191 ADNVLTKTFQIGTKEVEKIKSRL 213 (217)
Q Consensus 191 p~~vla~af~~~~~~v~~l~~~~ 213 (217)
.+.-|.+.++++++++++||+++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 56788888999999999999875
No 151
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=37.54 E-value=37 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027919 189 PVADNVLTKTFQIGTKEVEKIKSRLA 214 (217)
Q Consensus 189 ~~p~~vla~af~~~~~~v~~l~~~~~ 214 (217)
++++..|++..++++++|+++|+..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 69999999999999999999998754
No 152
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=36.62 E-value=63 Score=26.42 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred CcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEEEEcC
Q 027919 112 ATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPR 149 (217)
Q Consensus 112 a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~ 149 (217)
..-++|+++|++.+... .....|.+||.+++..
T Consensus 135 ~~~l~~~~~G~~~i~~~-----~~~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEG-----GNCISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCC-----EEEEEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecC-----CCceEcCCCCEEEEeC
Confidence 46778999998776532 1367999999998877
No 153
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=35.35 E-value=66 Score=32.21 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=33.5
Q ss_pred EEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEE
Q 027919 97 DYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145 (217)
Q Consensus 97 ~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 145 (217)
.+.||..+-..=.+- +|+.+|++|.+++.-.+..+......|++||.+
T Consensus 446 ~f~pge~iireGd~v-~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDPV-TDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 355666554444553 899999999998776543333456789999988
No 154
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=33.74 E-value=56 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.550 Sum_probs=15.7
Q ss_pred CCCHHHHHHHcC-CCHHHHHHH
Q 027919 189 PVADNVLTKTFQ-IGTKEVEKI 209 (217)
Q Consensus 189 ~~p~~vla~af~-~~~~~v~~l 209 (217)
.+|+|++.+.|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 599999999997 788877654
No 155
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=32.53 E-value=2.1e+02 Score=26.02 Aligned_cols=85 Identities=13% Similarity=0.120 Sum_probs=58.3
Q ss_pred CCCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeE-EEEEeCCCCEE--
Q 027919 69 NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVL-VSKSIKKGENF-- 145 (217)
Q Consensus 69 ~~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~-~~~~L~~GD~~-- 145 (217)
...|.++..++.++- +.-..+.|+.++.-.+.--+.+.+...+-.+++..-++.+.+++|+. -...|++||-+
T Consensus 249 L~sG~eVlvVd~~G~----tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~ 324 (344)
T PRK02290 249 LRSGDEVLVVDADGN----TREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLG 324 (344)
T ss_pred hcCCCEEEEEeCCCC----EEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEE
Confidence 345777777764432 23456778888876654444443558999999999999999888763 34679999965
Q ss_pred EEcCCCeEEEEe
Q 027919 146 VFPRGLVHFQKN 157 (217)
Q Consensus 146 ~~P~g~~H~~~N 157 (217)
+.+.+--|+-..
T Consensus 325 ~~~~~~RHfG~~ 336 (344)
T PRK02290 325 YLEEAARHFGMA 336 (344)
T ss_pred EecCCcccccce
Confidence 456666676543
No 156
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=32.53 E-value=43 Score=30.31 Aligned_cols=76 Identities=16% Similarity=0.303 Sum_probs=49.3
Q ss_pred CcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecC--C---------------------------
Q 027919 82 TIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA--N--------------------------- 132 (217)
Q Consensus 82 ~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~--~--------------------------- 132 (217)
.+|+.++.++.+...-.+.|.+.|.|.-+. .-++.-+-|+.++.+.-+. +
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 455555544454444444488888886665 6677777888777665321 1
Q ss_pred ----eEEEEEeCCCCEEEEcCCCeEEEEec
Q 027919 133 ----VLVSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 133 ----~~~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
+.....|++||++++|+...|+.+..
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 01134688899999999999987643
No 157
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=31.15 E-value=60 Score=19.93 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=18.8
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhhcC
Q 027919 189 PVADNVLTKTFQIGTKEVEKIKSRLA 214 (217)
Q Consensus 189 ~~p~~vla~af~~~~~~v~~l~~~~~ 214 (217)
+.+..-+++.++++..+|.+..++|.
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 57888999999999999999998874
No 158
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=30.88 E-value=1.6e+02 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEeCCCCEEEEcCCCeEEEEec
Q 027919 135 VSKSIKKGENFVFPRGLVHFQKNN 158 (217)
Q Consensus 135 ~~~~L~~GD~~~~P~g~~H~~~N~ 158 (217)
....+++|++++||...+|...-+
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeec
Confidence 467899999999999999988764
No 159
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=29.65 E-value=20 Score=36.16 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=38.0
Q ss_pred cCCCcCCCCCCCCCcEEEEEEecE-----EEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecC
Q 027919 99 APGGINPPHTHPRATEIVFVLEGQ-----LDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNG 159 (217)
Q Consensus 99 ~PG~~~p~H~Hp~a~Ei~yVl~G~-----~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g 159 (217)
+-|..+++-.||-.++-+|+-.+- -++++. ..+..=..||.++||+|.+|..+|.-
T Consensus 763 E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe-----~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 763 EQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVE-----PWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HhcCCCCcccCCCcccceeccHHHHHHHHHHhCCC-----ccchhhcccceEEecCCCcHHhhhhh
Confidence 334455565688767777766552 123332 24566778999999999999999864
No 160
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=28.83 E-value=82 Score=31.02 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=32.4
Q ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEE
Q 027919 95 RIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145 (217)
Q Consensus 95 ~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 145 (217)
...-+||... .|.-..-+-+.+|++|++++.-++ + ..-.|.+||+|
T Consensus 573 ~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQDD---E-VVAILGKGDVF 618 (971)
T KOG0501|consen 573 TNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQDD---E-VVAILGKGDVF 618 (971)
T ss_pred hccCCCccee-eecCCccceEEEEEecceEEeecC---c-EEEEeecCccc
Confidence 3445565533 354454577899999999998653 3 46789999998
No 161
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=28.60 E-value=39 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.2
Q ss_pred EEEeCCCCEEEEcCCCeEEEEe
Q 027919 136 SKSIKKGENFVFPRGLVHFQKN 157 (217)
Q Consensus 136 ~~~L~~GD~~~~P~g~~H~~~N 157 (217)
...|+||+.+++|+|.+|.+..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 4589999999999999998763
No 162
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=28.44 E-value=66 Score=18.78 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=18.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcC
Q 027919 190 VADNVLTKTFQIGTKEVEKIKSRLA 214 (217)
Q Consensus 190 ~p~~vla~af~~~~~~v~~l~~~~~ 214 (217)
+..+-++...++..++|.++-++|.
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6678899999999999998877653
No 163
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=27.21 E-value=1.9e+02 Score=23.62 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=23.2
Q ss_pred EeCCCCEEEEc---C---CCeEEEE-ecCCCcEEEEEEEcCCCCc
Q 027919 138 SIKKGENFVFP---R---GLVHFQK-NNGNVPASVIAGFNSQLQG 175 (217)
Q Consensus 138 ~L~~GD~~~~P---~---g~~H~~~-N~g~~~a~~l~~~~s~~pg 175 (217)
+|.|||+..|- + |.+|... |.|.++-..++++...+|-
T Consensus 132 ~lSpgdihsv~n~~sdrs~aiHvy~a~ig~~~r~~fsi~ge~~Pk 176 (191)
T COG5553 132 HLSPGDIHSVANTGSDRSGAIHVYLADIGGTDRQLFSILGENRPK 176 (191)
T ss_pred eeCCCCeeeecccCCCccceEEEEecccCCCcceeeeecccCCCC
Confidence 46777766665 2 3666544 4666666666666666663
No 164
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=26.76 E-value=1.3e+02 Score=21.49 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=11.4
Q ss_pred HHHHHhccCCCCCcc--EEee
Q 027919 16 VILNTAAADPEMLQD--VCVA 34 (217)
Q Consensus 16 ~~~~~~~~d~~~~~d--fcva 34 (217)
++..+.+..|..-.| +|.-
T Consensus 15 ~~~~~~~~~pA~A~dyp~Clq 35 (82)
T PF12071_consen 15 AALLALAAAPAQARDYPYCLQ 35 (82)
T ss_pred HHHHhccccchhhcCCcEEEe
Confidence 333344555666667 8986
No 165
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=23.75 E-value=98 Score=26.74 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=26.6
Q ss_pred EEEeCCCCEEEEcCCCeEEEE-ecCCCc-EEEEEEEcCC
Q 027919 136 SKSIKKGENFVFPRGLVHFQK-NNGNVP-ASVIAGFNSQ 172 (217)
Q Consensus 136 ~~~L~~GD~~~~P~g~~H~~~-N~g~~~-a~~l~~~~s~ 172 (217)
...+++||+++|...++|.-. |.++.+ ..++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 456899999999999999764 666544 3344566653
No 166
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=23.16 E-value=3.8e+02 Score=24.53 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCCceEEEEecCCcCCCCcCceEEEEEEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEE-EEEeCCCCEE--E
Q 027919 70 TFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLV-SKSIKKGENF--V 146 (217)
Q Consensus 70 ~~g~~v~~~~~~~~Pgl~~~gis~~~~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~-~~~L~~GD~~--~ 146 (217)
..|.++..++.++- +.-..+.|+.++.-.+..-+...+..++-.+++..-++.+.+++|+.. ...|++||-+ +
T Consensus 260 ~sG~~VlvVd~~G~----tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADGR----TRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCCC----EEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 44667766654332 224567788887666543333335589999999999999998887633 4579999965 4
Q ss_pred EcCCCeEEEEec
Q 027919 147 FPRGLVHFQKNN 158 (217)
Q Consensus 147 ~P~g~~H~~~N~ 158 (217)
++.+--|+-...
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 666777765443
No 167
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=22.95 E-value=1e+02 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred hhhcCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 027919 182 TLFASTPPVADNVLTKTFQIGTKEVEKIKSR 212 (217)
Q Consensus 182 ~~f~~~~~~p~~vla~af~~~~~~v~~l~~~ 212 (217)
.++.. +++-.-+++.|+++..+|-+..+.
T Consensus 16 ~l~~~--G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 16 ELYAE--GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHT--T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHC--CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 45565 699999999999999999987653
No 168
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=22.73 E-value=3.8e+02 Score=20.99 Aligned_cols=76 Identities=22% Similarity=0.149 Sum_probs=41.5
Q ss_pred EEecEEEEEEEecCCeEEEEEeCCCCEEEEcCCCeEEEEecCCCcEE--EEEEEcCCCCcceecchhhhcCCCCCCHHHH
Q 027919 118 VLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPAS--VIAGFNSQLQGTQNIALTLFASTPPVADNVL 195 (217)
Q Consensus 118 Vl~G~~~~~~~~~~~~~~~~~L~~GD~~~~P~g~~H~~~N~g~~~a~--~l~~~~s~~pg~~~~~~~~f~~~~~~p~~vl 195 (217)
|+.+..-...-++.|+ |...++||..-+.= .-.|..+.. -|.++....||..+.--... ....++||+|
T Consensus 33 Vv~~t~as~~t~~~G~-Ys~~~epG~Y~V~l-------~~~g~~~~~vG~I~V~~dS~pGTLN~fL~~~-~e~dl~Pevl 103 (134)
T PF08400_consen 33 VVVGTVASVVTGEAGE-YSFDVEPGVYRVTL-------KVEGRPPVYVGDITVYEDSKPGTLNDFLTAP-DEDDLRPEVL 103 (134)
T ss_pred eEEEEEEEEEcCCCce-EEEEecCCeEEEEE-------EECCCCceeEEEEEEecCCCCCcHHHHhhcc-ccccCCHHHH
Confidence 4555555555444454 88888888744321 111221222 35678888999864322111 1236889998
Q ss_pred HHHcCCC
Q 027919 196 TKTFQIG 202 (217)
Q Consensus 196 a~af~~~ 202 (217)
.+.=.+-
T Consensus 104 k~fe~m~ 110 (134)
T PF08400_consen 104 KRFEEMV 110 (134)
T ss_pred HHHHHHH
Confidence 8654443
No 169
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=22.64 E-value=55 Score=28.68 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=15.0
Q ss_pred cCCCCCCCCCcEEEEEEecEEEE
Q 027919 103 INPPHTHPRATEIVFVLEGQLDV 125 (217)
Q Consensus 103 ~~p~H~Hp~a~Ei~yVl~G~~~~ 125 (217)
.+.||.|.+ +|+.+|.-..
T Consensus 84 ~vEPHRh~G----Vfi~rgkeDa 102 (317)
T KOG1596|consen 84 LVEPHRHAG----VFIARGKEDA 102 (317)
T ss_pred Eeccccccc----eEEEcCchhh
Confidence 367999998 8888887554
No 170
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=22.32 E-value=1.2e+02 Score=23.36 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=5.0
Q ss_pred ccccCcccc
Q 027919 40 IKVNGFPCK 48 (217)
Q Consensus 40 ~~~~g~~ck 48 (217)
.+.||.||.
T Consensus 55 ~~~dGt~C~ 63 (120)
T PF07771_consen 55 FYGDGTPCF 63 (120)
T ss_pred EecCCCccc
Confidence 455555555
No 171
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.16 E-value=1.8e+02 Score=27.89 Aligned_cols=47 Identities=28% Similarity=0.303 Sum_probs=31.7
Q ss_pred EEEcCCCcCCCCCCCCCcEEEEEEecEEEEEEEecCCeEEEEEeCCCCEE
Q 027919 96 IDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENF 145 (217)
Q Consensus 96 ~~l~PG~~~p~H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~L~~GD~~ 145 (217)
-.+.||..+---=- -+.|..+|.+|.+.+--+ +|...-.+|++|+++
T Consensus 333 qvfSPgDyICrKGd-vgkEMyIVk~G~L~Vv~d--Dg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKGD-VGKEMYIVKEGKLAVVAD--DGVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecCc-ccceEEEEEccEEEEEec--CCcEEEEEecCCcee
Confidence 34556654322212 258999999999887654 465566799999876
No 172
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=20.37 E-value=2.1e+02 Score=24.80 Aligned_cols=55 Identities=11% Similarity=0.295 Sum_probs=35.3
Q ss_pred HhccCCCCCccEEeecCCCCccccCcccccCccCCCeeeeCCCCCCCccCCCCceEEEEecC
Q 027919 20 TAAADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQ 81 (217)
Q Consensus 20 ~~~~d~~~~~dfcva~~~~~~~~~g~~ck~~v~~~df~~~~~~~~~~~~~~~g~~v~~~~~~ 81 (217)
-.++.|.-+--+|+.|... ...||.|-+ +|.|--+..--....+.|+++-.+...
T Consensus 167 KV~~~pgivAElC~SDDP~--YtTGYVA~~-----~~gY~RI~~mK~~G~~~GGRvffv~~~ 221 (242)
T PRK01322 167 KVIAHPGVIAELCWSDDPD--YTTGYVATK-----KLGYHRITNLKEEGTPYGGRIFFVDDS 221 (242)
T ss_pred HHhcCCCeEEEEEecCCCC--CeeEEEEeC-----CCCeEeCccccccCCCCCCEEEEEeCc
Confidence 4578999999999997554 666986653 554432211112235788888776643
No 173
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=20.25 E-value=1.1e+02 Score=18.42 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=15.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHH
Q 027919 190 VADNVLTKTFQIGTKEVEKIK 210 (217)
Q Consensus 190 ~p~~vla~af~~~~~~v~~l~ 210 (217)
++++--.+.|+++.++..+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP 22 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLP 22 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-
T ss_pred cCHHHHHHHHCCCHHHHHHCh
Confidence 567888899999999988764
Done!