Query 027921
Match_columns 217
No_of_seqs 157 out of 1015
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 19.5 51 0.0018 22.7 1.8 27 29-68 31-57 (118)
2 2qho_B E3 ubiquitin-protein li 13.8 1.6E+02 0.0054 17.8 2.7 19 126-144 17-35 (53)
3 2kii_A Putative uncharacterize 9.2 4.9E+02 0.017 19.4 5.0 72 74-151 2-79 (181)
4 1p58_D Envelope protein M; fla 8.6 4E+02 0.014 17.3 3.6 33 6-39 30-62 (75)
5 1fs1_B SKP1, cyclin A/CDK2-ass 8.5 3.4E+02 0.012 19.4 3.7 37 109-145 101-139 (141)
6 2ksd_A Aerobic respiration con 6.9 28 0.00095 25.1 -2.9 68 6-85 9-76 (115)
7 2hwn_E A kinase binding peptid 6.5 2.8E+02 0.0097 14.0 1.6 11 27-37 10-20 (26)
8 2qdj_A Retinoblastoma-associat 6.3 4.2E+02 0.014 22.0 3.6 71 134-206 93-166 (304)
9 2cmx_A ORF F-112, F112, hypoth 5.2 2.8E+02 0.0095 19.4 1.5 11 30-40 32-42 (118)
10 3mp7_B Preprotein translocase 5.1 3.1E+02 0.011 17.1 1.6 28 55-82 25-52 (61)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=19.46 E-value=51 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHHh
Q 027921 29 GVGDIAAQYITHATAKSRLQLSDADEKFKVNWKRVAVTSS 68 (217)
Q Consensus 29 ~~gD~laQ~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~ 68 (217)
.+-|++||.-.... ..++..|++++.+
T Consensus 31 sledilaqfeis~~-------------sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVP-------------SAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHH-------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-------------hHhHHHHHHHHHH
Confidence 35688888765443 4678888888765
No 2
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=13.82 E-value=1.6e+02 Score=17.80 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.7
Q ss_pred HHhhCCCChHHHHHHHHhh
Q 027921 126 MGFSTGKNVAQVKEDLKRD 144 (217)
Q Consensus 126 ~~~l~g~s~~~~~~~lk~~ 144 (217)
..+|+|+|.+-|.+++++.
T Consensus 17 q~VLqgksR~vIirELqrT 35 (53)
T 2qho_B 17 QVVLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HHHSTTCCHHHHHHHHHHT
T ss_pred HHHhcCCcHHHHHHHHHHh
Confidence 4589999988899988764
No 3
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=9.15 E-value=4.9e+02 Score=19.38 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHHHhhhhcCCCCCchHHHHHHHHhhhhhhhhh------HHHHHHHHHHhhCCCChHHHHHHHHhhhHH
Q 027921 74 VGPVGHFWYEGLDRFIRLKLQLPPKSARFVATKVAMDSIIFGPL------DLFVFFTYMGFSTGKNVAQVKEDLKRDFLP 147 (217)
Q Consensus 74 ~gP~~h~wy~~Ld~~~~~~~~~~~~~~~~~~~Kvl~DQ~v~~P~------~~~~f~~~~~~l~g~s~~~~~~~lk~~~~~ 147 (217)
.|-+...|-.++...++. ..|..+..+.-++.-+|.|. .+.-.+...+-.-|.+.+++.+.+-+.+..
T Consensus 2 ~G~I~~~~~~~v~~~~G~------e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s~~~g~~~~~ll~~fG~~~~~ 75 (181)
T 2kii_A 2 KGIIFNVLEDMVVAQCGM------SVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFN 75 (181)
T ss_dssp CCHHHHHHHHHHHHHTCH------HHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHcCH------HHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356677888888888853 35666677776666666664 244444455556788988888887776655
Q ss_pred HHHh
Q 027921 148 ALVL 151 (217)
Q Consensus 148 ~l~~ 151 (217)
.+..
T Consensus 76 ~~~~ 79 (181)
T 2kii_A 76 GLAS 79 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=8.57 E-value=4e+02 Score=17.31 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=25.8
Q ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHhhhh
Q 027921 6 KWYQNCLAVHPLKTQVISSGFLWGVGDIAAQYIT 39 (217)
Q Consensus 6 ~~Y~~~l~~~Pl~tk~~ts~~l~~~gD~laQ~~~ 39 (217)
.+-.++.-|||..+-++. .+.+.+|+...|++.
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrvi 62 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRVL 62 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHHH
Confidence 445667778999988877 788888888888764
No 5
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=8.51 E-value=3.4e+02 Score=19.40 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=18.3
Q ss_pred hhhhhhhhhHHHHHHHHHHhhCCCChHHHHHH--HHhhh
Q 027921 109 MDSIIFGPLDLFVFFTYMGFSTGKNVAQVKED--LKRDF 145 (217)
Q Consensus 109 ~DQ~v~~P~~~~~f~~~~~~l~g~s~~~~~~~--lk~~~ 145 (217)
+|.+=.-++.-.+--.+...++|++.+|+++. ++++|
T Consensus 101 AnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~ 139 (141)
T 1fs1_B 101 ANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139 (141)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-----
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCC
Confidence 33333334433333334456799999998875 34554
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=6.91 E-value=28 Score=25.07 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHHhhcccccchhHHHHHHHH
Q 027921 6 KWYQNCLAVHPLKTQVISSGFLWGVGDIAAQYITHATAKSRLQLSDADEKFKVNWKRVAVTSSFGFGFVGPVGHFWYEGL 85 (217)
Q Consensus 6 ~~Y~~~l~~~Pl~tk~~ts~~l~~~gD~laQ~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~~G~~~~gP~~h~wy~~L 85 (217)
..|.++..|-=.+.-++...++.++-+++.|.+...--. .++++.-..|..+||. +.+|+.-|++..+
T Consensus 9 q~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~-----------G~v~~~Di~rsI~Fgl-i~aP~viYFls~v 76 (115)
T 2ksd_A 9 QYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLH-----------GQVESIDVIRSIFFGL-LITPWAVYFLSVV 76 (115)
T ss_dssp ------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSC-----------CCSSSSSCCSTTTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhc-----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445555555544445556667777778888877654321 1233333445577787 5899998888765
No 7
>2hwn_E A kinase binding peptide; PKA, AKAP, dimerization/docking, D/D, regulatory subunit, TR; 1.60A {Rattus norvegicus}
Probab=6.47 E-value=2.8e+02 Score=14.02 Aligned_cols=11 Identities=27% Similarity=0.163 Sum_probs=7.9
Q ss_pred HHHHHHHHHhh
Q 027921 27 LWGVGDIAAQY 37 (217)
Q Consensus 27 l~~~gD~laQ~ 37 (217)
.+.+.|++.|.
T Consensus 10 kmiv~dvmqq~ 20 (26)
T 2hwn_E 10 KMIVSDVMQQC 20 (26)
T ss_pred HHHHHHHHHHH
Confidence 45677888885
No 8
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=6.25 E-value=4.2e+02 Score=22.01 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=35.4
Q ss_pred hHHHHHHHHhhhHHHHHhccccchhhhhhheeeecCcc---chhhhhHHHHHHHHHHHHhhccccccchhhhcccc
Q 027921 134 VAQVKEDLKRDFLPALVLEGGIWPIVQVANFRYVPVRY---QLLYVNIFCLLDSAFLSWVEQQKDAAWKQWFTSFH 206 (217)
Q Consensus 134 ~~~~~~~lk~~~~~~l~~~~~~Wp~~q~inF~~VP~~~---Rvlf~n~v~~~W~~yLS~~~~~~~~~~~~~~~~~~ 206 (217)
+++-.++++++|.-+....=++=+..+-| |.-.|..- +.-..-+..++|..||...++-... .+-.++|+|
T Consensus 93 ~~~~i~~Le~~f~v~~~l~kky~~if~~i-F~~~~~~~~~~~~~~~~l~~f~W~LFL~~K~~~~~~-~~DLV~s~~ 166 (304)
T 2qdj_A 93 VDNAMSRLLKKYDVLFALFSKLERTCELI-YLTQPSSSISTEINSALVLKVSWITFLLAKGEVLQM-EDDLVISFQ 166 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-BCCBCCCSSSCCBCSHHHHHHHHHHHHHHHHHCC----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcccCCCCCCHHHHHHHHHHHHHHHhccCCCc-cccHHHHHH
Confidence 34445556666544333322333333333 22223222 1225567889999999998875432 444444443
No 9
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=5.19 E-value=2.8e+02 Score=19.36 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=5.9
Q ss_pred HHHHHHhhhhh
Q 027921 30 VGDIAAQYITH 40 (217)
Q Consensus 30 ~gD~laQ~~~~ 40 (217)
+-|++||.=..
T Consensus 32 ~eDIlaqfeIS 42 (118)
T 2cmx_A 32 LEDILAQFEIS 42 (118)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHhccc
Confidence 34666665443
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.08 E-value=3.1e+02 Score=17.06 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHhhcccccchhHHHHH
Q 027921 55 KFKVNWKRVAVTSSFGFGFVGPVGHFWY 82 (217)
Q Consensus 55 ~~~~D~~R~~~~~~~G~~~~gP~~h~wy 82 (217)
+..=++.+.++....|+++.|-+.+.-+
T Consensus 25 Pd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 25 PNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678999999999988888765544
Done!