Query 027921
Match_columns 217
No_of_seqs 157 out of 1015
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 04:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027921.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027921hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 30.9 12 0.00085 22.1 1.8 27 29-68 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 16.2 37 0.0027 19.3 1.8 25 57-81 7-31 (52)
3 d2v9va1 a.4.5.35 (A:377-437) C 11.7 58 0.0042 18.2 1.8 11 32-42 5-15 (61)
4 d1wfza_ d.224.1.2 (A:) Iron-su 10.5 1.3E+02 0.0097 20.0 3.9 73 114-206 58-130 (130)
5 d1ee8a1 a.156.1.2 (A:122-210) 10.3 41 0.003 21.0 0.9 18 103-120 24-41 (89)
6 d1k3xa1 a.156.1.2 (A:125-213) 10.2 33 0.0024 21.4 0.4 18 103-120 28-45 (89)
7 d1tdza1 a.156.1.2 (A:132-219) 9.8 37 0.0027 21.2 0.5 18 103-120 24-41 (88)
8 d1r2za1 a.156.1.2 (A:135-228) 9.8 40 0.0029 21.3 0.7 25 103-127 24-50 (94)
9 d1h2vc1 a.118.1.14 (C:29-290) 7.9 3.8E+02 0.027 19.4 6.2 69 101-169 37-114 (262)
10 d1k82a1 a.156.1.2 (A:129-216) 7.7 51 0.0037 20.5 0.5 18 103-120 24-41 (88)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=30.89 E-value=12 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhhhhhhhhhccccccccccchHHHHHHHHh
Q 027921 29 GVGDIAAQYITHATAKSRLQLSDADEKFKVNWKRVAVTSS 68 (217)
Q Consensus 29 ~~gD~laQ~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~ 68 (217)
.+-|++||.-.... ..++..|++++.+
T Consensus 22 ~ledilaqfeis~~-------------~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVP-------------SAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHH-------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccc-------------hHhHHHHHHHHHH
Confidence 35689999765443 3678888888764
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=16.25 E-value=37 Score=19.32 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=16.0
Q ss_pred cchHHHHHHHHhhcccccchhHHHH
Q 027921 57 KVNWKRVAVTSSFGFGFVGPVGHFW 81 (217)
Q Consensus 57 ~~D~~R~~~~~~~G~~~~gP~~h~w 81 (217)
-+|.+|++.-.....+..+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799998765544444556666653
No 3
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=11.66 E-value=58 Score=18.23 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=8.5
Q ss_pred HHHHhhhhhhh
Q 027921 32 DIAAQYITHAT 42 (217)
Q Consensus 32 D~laQ~~~~~~ 42 (217)
.++||.+.+.+
T Consensus 5 kilaqiiqehr 15 (61)
T d2v9va1 5 KILAQIIQEHR 15 (61)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHHH
Confidence 47899988765
No 4
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=10.54 E-value=1.3e+02 Score=19.96 Aligned_cols=73 Identities=12% Similarity=-0.077 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHhhCCCChHHHHHHHHhhhHHHHHhccccchhhhhhheeeecCccchhhhhHHHHHHHHHHHHhhcc
Q 027921 114 FGPLDLFVFFTYMGFSTGKNVAQVKEDLKRDFLPALVLEGGIWPIVQVANFRYVPVRYQLLYVNIFCLLDSAFLSWVEQQ 193 (217)
Q Consensus 114 ~~P~~~~~f~~~~~~l~g~s~~~~~~~lk~~~~~~l~~~~~~Wp~~q~inF~~VP~~~Rvlf~n~v~~~W~~yLS~~~~~ 193 (217)
.+.+.+++--++..++.|++.+|+.+--.++.. +.+. +|+. =..|..+.|.++-.-++.-
T Consensus 58 GC~is~AsaS~~tel~~Gkt~~ea~~i~~~~i~-------------~~l~---l~p~----R~~CA~La~~aL~~Al~~y 117 (130)
T d1wfza_ 58 GCGSAIASSSLATEWVKGKTVEEALTIKNTDIA-------------KELC---LPPV----KLHCSMLAEDAIKAALADY 117 (130)
T ss_dssp SCHHHHHHHHHHHHHHTTSBHHHHHHCCHHHHH-------------HHHT---CCGG----GHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHhccCHHHHHhcCcHHHH-------------HHcC---CCcc----hhhHHHHHHHHHHHHHHHH
Confidence 445555666666678899999887653223322 2222 2332 3578889999998888877
Q ss_pred ccccchhhhcccc
Q 027921 194 KDAAWKQWFTSFH 206 (217)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (217)
....+++..|+.+
T Consensus 118 ~~k~~~~~~p~~~ 130 (130)
T d1wfza_ 118 KLKQESKSGPSSG 130 (130)
T ss_dssp HHHHHCSSCSCCC
T ss_pred HHhccCccCCCCC
Confidence 7777777777653
No 5
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=10.31 E-value=41 Score=21.04 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=14.7
Q ss_pred HHHHHHhhhhhhhhhHHH
Q 027921 103 VATKVAMDSIIFGPLDLF 120 (217)
Q Consensus 103 ~~~Kvl~DQ~v~~P~~~~ 120 (217)
.++.+++||-+++-+.+.
T Consensus 24 ~ik~~LlDQ~~iaGiGN~ 41 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGNI 41 (89)
T ss_dssp BHHHHHHHSSSSTTCCHH
T ss_pred cHHHHHHhccccCCCCcH
Confidence 377899999999988543
No 6
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=10.16 E-value=33 Score=21.42 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhhHHH
Q 027921 103 VATKVAMDSIIFGPLDLF 120 (217)
Q Consensus 103 ~~~Kvl~DQ~v~~P~~~~ 120 (217)
.++.+++||-+++-+.+.
T Consensus 28 ~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 28 QFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp CHHHHTTCTTTSBTCCHH
T ss_pred hHHHHHhcCccccccCcH
Confidence 478899999999998543
No 7
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=9.83 E-value=37 Score=21.22 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhhHHH
Q 027921 103 VATKVAMDSIIFGPLDLF 120 (217)
Q Consensus 103 ~~~Kvl~DQ~v~~P~~~~ 120 (217)
.++.+++||-+++-+.+.
T Consensus 24 ~ik~~LldQ~~iaGIGNi 41 (88)
T d1tdza1 24 KIKPYLLEQTLVAGLGNI 41 (88)
T ss_dssp BHHHHHHTSSSSSCCCHH
T ss_pred cHHHHHHhccccCCcChH
Confidence 478899999999988543
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.79 E-value=40 Score=21.30 Aligned_cols=25 Identities=4% Similarity=0.013 Sum_probs=17.5
Q ss_pred HHHHHHhhhhhhhhhHH--HHHHHHHH
Q 027921 103 VATKVAMDSIIFGPLDL--FVFFTYMG 127 (217)
Q Consensus 103 ~~~Kvl~DQ~v~~P~~~--~~f~~~~~ 127 (217)
.++.+++||.+++-+.+ ..=+.+.+
T Consensus 24 ~ik~~LlDQ~~~aGiGN~y~~EiLf~a 50 (94)
T d1r2za1 24 SVKALLLDQTVVAGFGNIYVDESLFRA 50 (94)
T ss_dssp BHHHHHHCTTTSSSCCHHHHHHHHHHH
T ss_pred cHHHHHHhccccCCcccHHHHHHHHHH
Confidence 46889999999998843 33344443
No 9
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.90 E-value=3.8e+02 Score=19.40 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhhCCCChH---HHHHHHHhhhHHHHHh-cc-----ccchhhhhhheeeecC
Q 027921 101 RFVATKVAMDSIIFGPLDLFVFFTYMGFSTGKNVA---QVKEDLKRDFLPALVL-EG-----GIWPIVQVANFRYVPV 169 (217)
Q Consensus 101 ~~~~~Kvl~DQ~v~~P~~~~~f~~~~~~l~g~s~~---~~~~~lk~~~~~~l~~-~~-----~~Wp~~q~inF~~VP~ 169 (217)
+..+.+.+++.....|..++.|=+..++++-+..+ ++.+++.+.+-..+.. +| .+--+++++|+..++.
T Consensus 37 ~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~~ 114 (262)
T d1h2vc1 37 KSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 114 (262)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCcH
Confidence 45667788888888888888877777877766532 4455555555555544 22 1345566667666654
No 10
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=7.71 E-value=51 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhhhhhHHH
Q 027921 103 VATKVAMDSIIFGPLDLF 120 (217)
Q Consensus 103 ~~~Kvl~DQ~v~~P~~~~ 120 (217)
.++.+++||-+++-+.+.
T Consensus 24 ~ik~~LlDQ~~iaGiGN~ 41 (88)
T d1k82a1 24 AIKPWLMDNKLVVGVGNI 41 (88)
T ss_dssp BHHHHHTCTTTCSSCCHH
T ss_pred hHHHHHHccccccccchH
Confidence 467899999999988543
Done!