Query 027923
Match_columns 217
No_of_seqs 121 out of 1084
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692 Putative cargo transpo 100.0 1.4E-48 3E-53 293.2 18.6 184 28-217 18-201 (201)
2 KOG1691 emp24/gp25L/p24 family 100.0 1.2E-45 2.6E-50 282.6 25.0 205 12-217 4-210 (210)
3 KOG1690 emp24/gp25L/p24 family 100.0 4.1E-45 8.9E-50 275.4 21.1 198 18-217 8-215 (215)
4 KOG1693 emp24/gp25L/p24 family 100.0 1.2E-42 2.6E-47 262.6 19.0 191 20-215 13-205 (209)
5 KOG3287 Membrane trafficking p 100.0 3.6E-37 7.9E-42 235.4 21.0 184 28-215 33-227 (236)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 2.8E-39 6E-44 251.3 0.8 180 30-212 1-183 (183)
7 smart00557 IG_FLMN Filamin-typ 94.6 0.67 1.5E-05 31.6 9.4 45 67-111 31-78 (93)
8 PF04151 PPC: Bacterial pre-pe 92.7 0.85 1.8E-05 29.2 6.8 61 41-107 3-68 (70)
9 PF01835 A2M_N: MG2 domain; I 92.4 2.2 4.8E-05 29.2 9.1 62 49-110 13-86 (99)
10 PF00630 Filamin: Filamin/ABP2 89.6 4.9 0.00011 27.3 8.8 64 48-111 18-92 (101)
11 PF13860 FlgD_ig: FlgD Ig-like 89.5 3.4 7.5E-05 27.3 7.5 43 51-97 12-56 (81)
12 PF11589 DUF3244: Domain of un 85.5 5.6 0.00012 27.8 7.0 56 50-111 36-95 (106)
13 PF13473 Cupredoxin_1: Cupredo 84.6 4.2 9.2E-05 28.1 6.0 70 29-107 21-92 (104)
14 PRK05842 flgD flagellar basal 83.3 7 0.00015 32.7 7.6 60 50-109 148-220 (295)
15 PRK06655 flgD flagellar basal 81.4 8.7 0.00019 30.9 7.3 56 50-109 112-178 (225)
16 PRK14081 triple tyrosine motif 80.9 32 0.0007 32.2 11.5 73 50-126 401-476 (667)
17 COG2372 CopC Uncharacterized p 80.8 19 0.00041 26.2 9.9 41 69-109 61-108 (127)
18 PRK12813 flgD flagellar basal 79.7 9.6 0.00021 30.6 7.0 55 50-109 110-173 (223)
19 PF09315 DUF1973: Domain of un 79.4 27 0.00058 27.0 9.8 65 40-111 18-88 (179)
20 PF13620 CarboxypepD_reg: Carb 78.8 4.3 9.3E-05 26.4 4.1 42 68-109 15-56 (82)
21 PF13897 GOLD_2: Golgi-dynamic 78.1 3.4 7.4E-05 30.3 3.6 30 94-125 104-133 (136)
22 PF07495 Y_Y_Y: Y_Y_Y domain; 77.0 15 0.00032 22.7 8.0 57 67-125 7-65 (66)
23 PRK12812 flgD flagellar basal 76.0 12 0.00027 30.7 6.7 55 51-109 128-193 (259)
24 PF05738 Cna_B: Cna protein B- 73.9 17 0.00038 22.7 5.9 41 69-109 3-45 (70)
25 PF14524 Wzt_C: Wzt C-terminal 73.2 14 0.0003 26.5 5.9 61 48-109 32-92 (142)
26 PRK12633 flgD flagellar basal 68.7 23 0.00049 28.6 6.6 54 52-109 117-181 (230)
27 PF04728 LPP: Lipoprotein leuc 67.1 27 0.00059 21.5 6.3 28 143-170 5-32 (56)
28 cd03447 FAS_MaoC FAS_MaoC, the 64.1 51 0.0011 23.6 9.0 41 43-84 77-118 (126)
29 PF10572 UPF0556: Uncharacteri 63.5 62 0.0014 24.4 8.7 35 27-62 22-57 (158)
30 PRK15396 murein lipoprotein; P 63.2 41 0.00089 22.3 6.1 45 141-185 25-69 (78)
31 PRK12634 flgD flagellar basal 62.2 27 0.00058 28.0 5.8 41 68-108 122-173 (221)
32 PF10528 PA14_2: GLEYA domain; 61.8 27 0.00059 24.8 5.3 45 37-85 56-102 (113)
33 PF08372 PRT_C: Plant phosphor 59.9 60 0.0013 24.6 7.0 49 140-188 51-99 (156)
34 PF15284 PAGK: Phage-encoded v 59.5 5.5 0.00012 24.9 1.1 18 1-22 1-18 (61)
35 PF10779 XhlA: Haemolysin XhlA 59.2 45 0.00098 21.4 8.5 23 143-165 8-30 (71)
36 PF05753 TRAP_beta: Translocon 58.7 84 0.0018 24.3 9.7 30 45-76 32-61 (181)
37 PRK09619 flgD flagellar basal 58.0 51 0.0011 26.4 6.8 54 51-109 110-171 (218)
38 PF10805 DUF2730: Protein of u 57.3 35 0.00076 23.9 5.1 48 138-185 32-88 (106)
39 PRK14081 triple tyrosine motif 56.7 52 0.0011 30.9 7.4 63 46-109 202-264 (667)
40 PRK09973 putative outer membra 56.6 59 0.0013 21.9 5.9 46 141-186 24-69 (85)
41 KOG0518 Actin-binding cytoskel 55.3 65 0.0014 31.8 7.8 45 67-111 882-929 (1113)
42 PF10648 Gmad2: Immunoglobulin 54.7 27 0.00058 23.6 4.1 36 50-85 11-46 (88)
43 PF09753 Use1: Membrane fusion 50.9 1.3E+02 0.0028 24.4 8.3 23 187-210 228-250 (251)
44 COG5415 Predicted integral mem 49.8 1.3E+02 0.0029 24.0 9.0 68 142-209 16-88 (251)
45 PF08842 Mfa2: Fimbrillin-A as 48.7 24 0.00053 28.5 3.7 62 48-109 5-76 (283)
46 PF04678 DUF607: Protein of un 48.5 1.2E+02 0.0027 23.3 8.9 47 147-193 56-102 (180)
47 PF05739 SNARE: SNARE domain; 48.3 62 0.0013 19.7 6.3 44 141-184 4-47 (63)
48 COG4856 Uncharacterized protei 48.2 1.9E+02 0.004 25.3 8.8 55 51-108 52-111 (403)
49 cd03446 MaoC_like MoaC_like 47.3 1E+02 0.0022 22.0 7.8 46 41-86 84-135 (140)
50 PF10779 XhlA: Haemolysin XhlA 46.9 76 0.0016 20.3 6.4 28 145-172 3-30 (71)
51 PF14109 GldH_lipo: GldH lipop 46.8 1.1E+02 0.0024 22.2 6.6 42 67-108 67-113 (131)
52 PF04136 Sec34: Sec34-like fam 45.4 1.3E+02 0.0028 22.6 7.2 51 145-195 32-82 (157)
53 KOG1693 emp24/gp25L/p24 family 45.3 1.5E+02 0.0033 23.4 13.8 158 27-196 32-197 (209)
54 PF05506 DUF756: Domain of unk 44.2 94 0.002 20.6 6.6 35 41-79 47-81 (89)
55 KOG3202 SNARE protein TLG1/Syn 42.7 1.8E+02 0.004 23.6 8.3 25 140-164 151-175 (235)
56 COG4467 Regulator of replicati 42.5 1.2E+02 0.0026 21.4 5.6 44 141-184 8-51 (114)
57 KOG2861 Uncharacterized conser 41.8 65 0.0014 28.3 5.3 56 145-206 337-392 (399)
58 PF14584 DUF4446: Protein of u 41.4 78 0.0017 23.8 5.1 48 135-182 33-80 (151)
59 PRK02710 plastocyanin; Provisi 41.2 1.3E+02 0.0028 21.3 10.3 74 27-108 27-105 (119)
60 KOG0518 Actin-binding cytoskel 41.1 1.5E+02 0.0033 29.4 7.9 54 69-123 790-845 (1113)
61 PF10794 DUF2606: Protein of u 41.0 1.4E+02 0.0029 21.6 6.2 22 89-110 86-107 (131)
62 PF06156 DUF972: Protein of un 40.7 1.3E+02 0.0028 21.2 6.0 26 143-168 10-35 (107)
63 PF12669 P12: Virus attachment 40.2 35 0.00075 21.1 2.6 9 207-215 17-25 (58)
64 PF05377 FlaC_arch: Flagella a 39.7 90 0.002 19.2 5.8 27 143-169 2-28 (55)
65 KOG3091 Nuclear pore complex, 39.0 1.5E+02 0.0033 26.8 7.1 51 142-192 349-399 (508)
66 PF07125 DUF1378: Protein of u 38.9 54 0.0012 20.0 3.1 29 184-214 7-35 (59)
67 PF11166 DUF2951: Protein of u 37.3 1.4E+02 0.003 20.6 8.8 37 173-211 60-96 (98)
68 COG5415 Predicted integral mem 37.3 1.8E+02 0.0039 23.2 6.6 52 144-202 11-62 (251)
69 cd03455 SAV4209 SAV4209 is a S 37.1 1.5E+02 0.0032 20.8 9.0 43 43-85 76-118 (123)
70 PF07835 COX4_pro_2: Bacterial 36.8 88 0.0019 18.2 4.1 23 179-201 19-41 (44)
71 PF09323 DUF1980: Domain of un 36.0 51 0.0011 25.4 3.5 33 181-213 27-59 (182)
72 COG1723 Uncharacterized conser 35.8 56 0.0012 27.7 3.8 55 145-205 270-324 (331)
73 PF14257 DUF4349: Domain of un 35.5 1.8E+02 0.004 23.6 6.9 30 141-170 162-191 (262)
74 PF11166 DUF2951: Protein of u 34.8 1.5E+02 0.0033 20.3 5.5 37 150-186 41-77 (98)
75 PF13464 DUF4115: Domain of un 33.7 1.1E+02 0.0023 19.8 4.3 39 69-109 8-46 (77)
76 TIGR03503 conserved hypothetic 33.3 3.3E+02 0.0072 23.8 11.4 42 67-108 241-285 (374)
77 PF07888 CALCOCO1: Calcium bin 32.3 4.1E+02 0.0089 24.5 9.7 74 32-109 14-96 (546)
78 PHA02650 hypothetical protein; 31.7 61 0.0013 21.4 2.7 29 181-209 44-72 (81)
79 PRK13169 DNA replication intia 30.7 2E+02 0.0043 20.4 6.1 24 144-167 11-34 (110)
80 PF13584 BatD: Oxygen toleranc 30.6 1.8E+02 0.004 25.9 6.7 61 46-106 23-90 (484)
81 PRK14148 heat shock protein Gr 30.1 2.7E+02 0.0059 21.9 7.3 36 143-178 42-77 (195)
82 PF13715 DUF4480: Domain of un 29.9 1.6E+02 0.0034 19.1 7.0 37 68-109 16-52 (88)
83 PF03908 Sec20: Sec20; InterP 28.9 1.8E+02 0.004 19.5 7.4 12 180-191 67-78 (92)
84 PF05371 Phage_Coat_Gp8: Phage 28.9 1E+02 0.0022 18.7 3.1 22 192-213 30-51 (52)
85 PRK01026 tetrahydromethanopter 28.9 1.8E+02 0.0038 19.2 7.8 51 140-197 14-64 (77)
86 PF00517 GP41: Retroviral enve 28.7 2.6E+02 0.0057 22.0 6.5 21 182-202 148-168 (204)
87 PHA03054 IMV membrane protein; 28.6 78 0.0017 20.4 2.8 28 181-208 43-70 (72)
88 PHA02819 hypothetical protein; 28.4 83 0.0018 20.3 2.9 29 181-209 41-69 (71)
89 PF03554 Herpes_UL73: UL73 vir 27.8 1E+02 0.0023 20.6 3.4 28 180-207 44-71 (82)
90 TIGR01149 mtrG N5-methyltetrah 27.7 1.7E+02 0.0038 18.8 7.0 49 141-196 12-60 (70)
91 TIGR02542 B_forsyth_147 Bacter 27.7 43 0.00094 24.0 1.7 13 99-111 115-127 (145)
92 PRK13791 lysozyme inhibitor; P 27.6 2.3E+02 0.005 20.2 8.9 23 36-58 25-47 (113)
93 PF07210 DUF1416: Protein of u 27.2 2E+02 0.0043 19.3 6.9 58 47-108 4-61 (85)
94 PRK14153 heat shock protein Gr 27.2 3.1E+02 0.0067 21.5 7.7 28 145-172 44-71 (194)
95 KOG2678 Predicted membrane pro 26.8 3.4E+02 0.0074 21.9 9.0 34 181-214 210-243 (244)
96 PF04210 MtrG: Tetrahydrometha 26.5 1.8E+02 0.004 18.7 6.7 51 141-198 12-62 (70)
97 KOG3385 V-SNARE [Intracellular 26.4 2.5E+02 0.0054 20.1 5.6 25 140-164 35-59 (118)
98 PF00957 Synaptobrevin: Synapt 26.1 2E+02 0.0043 19.0 9.9 32 156-187 32-63 (89)
99 PF04234 CopC: CopC domain; I 26.0 1.3E+02 0.0029 20.3 3.9 41 69-109 34-80 (97)
100 COG3915 Uncharacterized protei 25.6 1.4E+02 0.003 22.2 3.9 35 11-45 6-40 (155)
101 PF11797 DUF3324: Protein of u 25.6 2.1E+02 0.0046 20.9 5.2 44 67-110 60-115 (140)
102 PHA02975 hypothetical protein; 25.4 1.3E+02 0.0028 19.3 3.3 28 182-209 40-67 (69)
103 cd05866 Ig1_NCAM-2 First immun 25.0 2.2E+02 0.0047 19.0 8.6 71 47-125 12-91 (92)
104 PF01166 TSC22: TSC-22/dip/bun 25.0 1.8E+02 0.0039 18.1 4.3 31 140-170 13-43 (59)
105 PF13874 Nup54: Nucleoporin co 24.9 2.8E+02 0.0061 20.3 7.6 48 140-187 43-90 (141)
106 PF02083 Urotensin_II: Urotens 24.9 26 0.00056 14.5 0.1 8 38-45 2-9 (12)
107 COG4676 Uncharacterized protei 24.9 3.7E+02 0.008 21.7 7.6 83 23-108 108-209 (268)
108 COG4549 Uncharacterized protei 24.8 3.2E+02 0.007 20.9 11.0 39 47-86 32-70 (178)
109 PF12904 Collagen_bind_2: Puta 24.8 1.9E+02 0.0041 19.7 4.4 9 69-77 48-56 (93)
110 PRK14155 heat shock protein Gr 24.3 3.7E+02 0.0079 21.4 7.2 35 143-177 22-56 (208)
111 PF10754 DUF2569: Protein of u 23.9 3E+02 0.0066 20.3 6.0 30 187-216 54-83 (149)
112 PRK01844 hypothetical protein; 23.9 2.1E+02 0.0046 18.6 4.2 26 188-213 6-31 (72)
113 PHA02844 putative transmembran 23.6 1.1E+02 0.0024 20.0 2.8 26 184-209 46-71 (75)
114 cd03453 SAV4209_like SAV4209_l 23.5 2.7E+02 0.0058 19.5 8.3 42 43-84 77-121 (127)
115 KOG2662 Magnesium transporters 23.2 5.2E+02 0.011 22.9 7.7 17 152-168 319-335 (414)
116 PRK00523 hypothetical protein; 23.0 2.3E+02 0.0049 18.5 4.3 27 187-213 6-32 (72)
117 PF09394 Inhibitor_I42: Chagas 23.0 2.3E+02 0.005 18.6 5.2 35 92-126 56-91 (92)
118 PF11857 DUF3377: Domain of un 22.8 64 0.0014 21.1 1.6 16 10-25 33-48 (74)
119 PF08114 PMP1_2: ATPase proteo 22.7 1.4E+02 0.003 17.1 2.8 24 192-215 15-38 (43)
120 PHA03163 hypothetical protein; 22.6 2.2E+02 0.0048 19.3 4.2 28 180-207 53-80 (92)
121 PF03061 4HBT: Thioesterase su 22.5 2E+02 0.0043 17.7 4.2 39 43-82 40-78 (79)
122 PF10670 DUF4198: Domain of un 22.4 3.6E+02 0.0078 20.6 6.7 16 90-105 192-207 (215)
123 PF09425 CCT_2: Divergent CCT 22.1 50 0.0011 17.1 0.8 10 206-215 7-16 (27)
124 PF10805 DUF2730: Protein of u 21.7 85 0.0019 21.9 2.3 28 186-213 7-34 (106)
125 cd05753 Ig2_FcgammaR_like Seco 21.5 2.2E+02 0.0047 18.4 4.2 56 46-109 10-68 (83)
126 PF02927 CelD_N: N-terminal ig 21.5 2.6E+02 0.0056 18.6 5.3 40 69-108 35-85 (91)
127 PF12690 BsuPI: Intracellular 21.4 2.5E+02 0.0055 18.5 5.9 19 68-86 24-42 (82)
128 PF07076 DUF1344: Protein of u 21.3 2.1E+02 0.0046 18.0 3.7 33 29-61 15-52 (61)
129 PF01519 DUF16: Protein of unk 21.3 3E+02 0.0065 19.2 6.4 43 143-185 55-97 (102)
130 PF14054 DUF4249: Domain of un 21.2 4.6E+02 0.0099 21.4 8.2 42 20-61 6-51 (298)
131 PRK10378 inactive ferrous ion 21.2 3.9E+02 0.0084 23.4 6.6 68 29-106 30-103 (375)
132 PF10651 DUF2479: Domain of un 21.2 3.7E+02 0.008 20.3 10.3 109 53-162 35-159 (170)
133 cd03441 R_hydratase_like (R)-h 20.9 2.9E+02 0.0062 18.9 7.7 46 39-84 73-121 (127)
134 PF07172 GRP: Glycine rich pro 20.9 77 0.0017 21.8 1.8 7 12-18 8-14 (95)
135 PRK14163 heat shock protein Gr 20.7 4.5E+02 0.0097 21.0 7.2 55 140-194 46-100 (214)
136 PF15468 DUF4636: Domain of un 20.5 78 0.0017 25.3 2.0 21 6-26 36-56 (243)
137 PF13544 N_methyl_2: Type IV p 20.4 1.1E+02 0.0024 16.2 2.0 22 180-201 8-29 (31)
138 PRK14155 heat shock protein Gr 20.2 4.5E+02 0.0098 20.9 7.8 52 143-194 15-66 (208)
No 1
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-48 Score=293.18 Aligned_cols=184 Identities=25% Similarity=0.423 Sum_probs=171.9
Q ss_pred ceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEE
Q 027923 28 SDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACF 107 (217)
Q Consensus 28 ~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf 107 (217)
+.++.+.+++.+++||+|++..|+.+.++|++.+++ .+++++.|++|+|+.++..++.+.|+|+|+++.+|.|++||
T Consensus 18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg---~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF 94 (201)
T KOG1692|consen 18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG---FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCF 94 (201)
T ss_pred hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC---ccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEe
Confidence 889999999999999999999999999999999863 67999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027923 108 WVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAW 187 (217)
Q Consensus 108 ~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~ 187 (217)
.| ..++..++.|.|+++.|...+. ++.+++++.+++++.+.+|...|..++.||.|+..|+++||.++|+|++|++|
T Consensus 95 ~N--~~s~mtpk~V~F~ihvg~~~~~-~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~ 171 (201)
T KOG1692|consen 95 SN--KMSTMTPKTVMFTIHVGHAPQR-DDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVL 171 (201)
T ss_pred cC--CCCCCCceEEEEEEEEeecccc-chhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeeh
Confidence 76 4466678999999999877654 34778888899999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923 188 YSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217 (217)
Q Consensus 188 ~si~~~~vli~~~~~Qv~~lk~fF~~kkli 217 (217)
||++|.++||++++.|+|||||||+.|+++
T Consensus 172 wsife~~vLi~~s~~QVyYLkRfFEvkrvv 201 (201)
T KOG1692|consen 172 WSIFEALVLIAMSVLQVYYLKRFFEVKRVV 201 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence 999999999999999999999999999864
No 2
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-45 Score=282.63 Aligned_cols=205 Identities=54% Similarity=0.882 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHhhcceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccc
Q 027923 12 LFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYG 91 (217)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~ 91 (217)
..+..++++++++...+.++.|+++++.++|+.|++.++..+.|.|.+.+...+..+.+++.|+||.|+.+++.++.++|
T Consensus 4 ~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~g 83 (210)
T KOG1691|consen 4 PCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKG 83 (210)
T ss_pred HhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccc
Confidence 45556666677778889999999999999999999999999999999997643323689999999999999999999999
Q ss_pred eEEEEecccceeeEEEEeCC--CCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 92 QFAFTTHEAGNYLACFWVDG--HNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKT 169 (217)
Q Consensus 92 ~~~f~~~~~G~y~iCf~n~~--~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~ 169 (217)
+|+|++.++|.|.+||.+.. +.. .....|.|+|..|.+++||+++||+++++++|-++++|++.+.+|.++.-|+|.
T Consensus 84 qFaFta~e~~~y~~Cf~~~~~~~~p-~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~ 162 (210)
T KOG1691|consen 84 QFAFTAEESGMYEACFTADVPGHKP-ETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLRE 162 (210)
T ss_pred eEEEEeccCCcEEEEEecccCCCCC-CcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999833 222 235899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923 170 KEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217 (217)
Q Consensus 170 re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kkli 217 (217)
||+++|+++++||+||.|+|++.++++++++.||++|||+||++||+|
T Consensus 163 REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI 210 (210)
T KOG1691|consen 163 REEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI 210 (210)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999997
No 3
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-45 Score=275.40 Aligned_cols=198 Identities=27% Similarity=0.399 Sum_probs=174.8
Q ss_pred HHHHHHHhhcceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCC-------CCCCceEEEEEECCCCC--eeeeeecc
Q 027923 18 AFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDD-------HSHSPTISVKVTSPYGN--NLHNRENV 88 (217)
Q Consensus 18 ~~~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~-------~~~~~~i~~~v~~p~g~--~v~~~~~~ 88 (217)
.+++++++..++|++|++.+++++||++++|+|+.+.|+|.+.-.+ +.++.++.+.|.+|.++ +|+++...
T Consensus 8 ~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~s 87 (215)
T KOG1690|consen 8 LLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYS 87 (215)
T ss_pred HHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCC
Confidence 3445667778999999999999999999999999999999986432 12356889999999888 99999999
Q ss_pred ccceEEEEecccceeeEEEEeCCCC-CCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 027923 89 TYGQFAFTTHEAGNYLACFWVDGHN-PGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYL 167 (217)
Q Consensus 89 ~~~~~~f~~~~~G~y~iCf~n~~~~-~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~ 167 (217)
++|.|+|++..+|+|+||+.+..+. ......+|.+++++|+++.++. ..+++.+.++.++..|.+++.+|+.||+++
T Consensus 88 s~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~ 165 (215)
T KOG1690|consen 88 SEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKEQNLQ 165 (215)
T ss_pred CCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999854442 2345789999999999887754 345667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923 168 KTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217 (217)
Q Consensus 168 ~~re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kkli 217 (217)
|.||+++|++.||+|+|++||+++|+++++++|+||+.+||+||.++|++
T Consensus 166 R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv 215 (215)
T KOG1690|consen 166 REREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV 215 (215)
T ss_pred HHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999986
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=262.59 Aligned_cols=191 Identities=23% Similarity=0.406 Sum_probs=168.6
Q ss_pred HHHHHhhcceeEEEEEcCCCcceEeeeccCCcE-EEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEec
Q 027923 20 YFTINAIVSDAIWLNLPATGTKCVSEEIQNNVV-VLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTH 98 (217)
Q Consensus 20 ~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~-i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~ 98 (217)
+++.++..+..++|+||++.++|||+++++++. +.++|+|..|| +.+|++.|++|+|++|++.+++..+.|.|++.
T Consensus 13 lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG---~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae 89 (209)
T KOG1693|consen 13 LLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG---HFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAE 89 (209)
T ss_pred HHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC---ceeeEEEEECCCCCEEeeccccccccEEEEEe
Confidence 344455558899999999999999999999765 99999999874 78999999999999999999999999999999
Q ss_pred ccceeeEEEEeCCCCCCCCeEEEEEEEeeccccccchHH-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 99 EAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESV-ARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREV 177 (217)
Q Consensus 99 ~~G~y~iCf~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~-~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~ 177 (217)
+.|+|++||+| +.++..+|.++++++.|.+..-.... .+....+.++.++..+...|..|.+.|.|.|.||+|.|.+
T Consensus 90 ~~G~Y~fCFsN--~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t 167 (209)
T KOG1693|consen 90 GKGEYTFCFSN--EFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST 167 (209)
T ss_pred cceEEEEEecC--ccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999976 66777889999999988654322221 1233457899999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 027923 178 SEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKK 215 (217)
Q Consensus 178 ~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kk 215 (217)
++++++||+|||++++++++++++.|++.||.||+.|+
T Consensus 168 v~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r 205 (209)
T KOG1693|consen 168 VESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR 205 (209)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999876
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-37 Score=235.40 Aligned_cols=184 Identities=21% Similarity=0.344 Sum_probs=160.2
Q ss_pred ceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEE
Q 027923 28 SDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACF 107 (217)
Q Consensus 28 ~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf 107 (217)
.-.+++.||||+++|||+.++.+..+..+|+|++| + ++.+|++.+.+|-|.++.+...+.+|.+++...++|.|++||
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~-GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~Cf 110 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-A-GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCF 110 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-C-CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEE
Confidence 35789999999999999999999999999999987 2 367999999999999999988889999999999999999999
Q ss_pred EeCCCCCCCCeEEEEEEEee---ccc---cccchHHhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 108 WVDGHNPGGGDVSVNIDWKT---GIA---AKDWESVARK-----EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMRE 176 (217)
Q Consensus 108 ~n~~~~~~~~~~~v~f~~~~---g~~---~~d~~~~~~~-----~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~ 176 (217)
+| ++|..+.|.|+|++-. |+. +..|++.++. ..++.+++.++.+.++|..+...|..+|.||.|+|.
T Consensus 111 DN--sFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~ 188 (236)
T KOG3287|consen 111 DN--SFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRN 188 (236)
T ss_pred cC--ccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 76 4555567899998732 322 2234333222 246789999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 027923 177 VSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKK 215 (217)
Q Consensus 177 ~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kk 215 (217)
+.+++..||.|||++|+.+||+++.+|||+|||+|+.|+
T Consensus 189 L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~ 227 (236)
T KOG3287|consen 189 LQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS 227 (236)
T ss_pred HHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence 999999999999999999999999999999999999875
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=2.8e-39 Score=251.27 Aligned_cols=180 Identities=31% Similarity=0.554 Sum_probs=5.5
Q ss_pred eEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEE--CCCCCeeeeeecc-ccceEEEEecccceeeEE
Q 027923 30 AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVT--SPYGNNLHNRENV-TYGQFAFTTHEAGNYLAC 106 (217)
Q Consensus 30 ~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~--~p~g~~v~~~~~~-~~~~~~f~~~~~G~y~iC 106 (217)
|++|.|+||+++||++++++|+.+.++|++.+++ +..++++.|+ +|+|+++++.... ++|+|+|+++++|+|++|
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iC 78 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQIC 78 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEE
Confidence 6899999999999999999999999999999864 2468999999 5566888888555 457999999999999999
Q ss_pred EEeCCCCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027923 107 FWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVA 186 (217)
Q Consensus 107 f~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~ 186 (217)
|+|+.+.+.. ++.|+|+++.|.+..|.++.++++++++++..|++|.+.+..|+++|+|++.|+++|+++++++++|++
T Consensus 79 f~n~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~ 157 (183)
T PF01105_consen 79 FDNSSSSFSP-SKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIM 157 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCCCCccc-cEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence 9986543221 389999999987766666788899999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhh
Q 027923 187 WYSLMSLGVCIVVSGVQVWHLKRFFQ 212 (217)
Q Consensus 187 ~~si~~~~vli~~~~~Qv~~lk~fF~ 212 (217)
+|+++++++++++++||+++||+||+
T Consensus 158 ~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 158 WWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp --------------------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999996
No 7
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=94.61 E-value=0.67 Score=31.62 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=32.6
Q ss_pred CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCC
Q 027923 67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDG 111 (217)
Q Consensus 67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~ 111 (217)
...+.+.|.+|+|+.+..+ .+...|. .+|++...|.|++.+.-.+
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 3589999999999755332 3334565 4788899999999987543
No 8
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=92.66 E-value=0.85 Score=29.23 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=41.8
Q ss_pred ceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccc-----cceEEEEecccceeeEEE
Q 027923 41 KCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVT-----YGQFAFTTHEAGNYLACF 107 (217)
Q Consensus 41 ~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~-----~~~~~f~~~~~G~y~iCf 107 (217)
..|..++++|+.+.+.- ... ..+.++.+.+++|..+.+....+ .....|+++.+|.|.+=+
T Consensus 3 D~y~f~v~ag~~l~i~l--~~~----~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTIDL--SGG----SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEEE--CET----TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEE--cCC----CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 45777888988876653 322 12677999999988776633222 345778899999998754
No 9
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=92.43 E-value=2.2 Score=29.15 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCcEEEEEEEEeeCCC----CCCceEEEEEECCCCCeeeeeec---cccceEEEEe--c---ccceeeEEEEeC
Q 027923 49 NNVVVLADYVVVSDDH----SHSPTISVKVTSPYGNNLHNREN---VTYGQFAFTT--H---EAGNYLACFWVD 110 (217)
Q Consensus 49 ~~~~i~~~y~v~~~~~----~~~~~i~~~v~~p~g~~v~~~~~---~~~~~~~f~~--~---~~G~y~iCf~n~ 110 (217)
+|+.+.+.-.+.+.+. ..+..+.+.|.||+|+.+..... ...|.++++. + ..|.|++=+...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4777777666554431 12458999999999999877665 2356554433 3 359999998763
No 10
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=89.60 E-value=4.9 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=38.6
Q ss_pred cCCcEEEEEEEEeeCCCC----CCceEEEEEECCCCC----eee-eeeccccce--EEEEecccceeeEEEEeCC
Q 027923 48 QNNVVVLADYVVVSDDHS----HSPTISVKVTSPYGN----NLH-NRENVTYGQ--FAFTTHEAGNYLACFWVDG 111 (217)
Q Consensus 48 ~~~~~i~~~y~v~~~~~~----~~~~i~~~v~~p~g~----~v~-~~~~~~~~~--~~f~~~~~G~y~iCf~n~~ 111 (217)
..|....+.....+.... +...+.+.|.+|++. .+. .-....+|. .+|++...|.|++++.-++
T Consensus 18 ~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 18 VVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp ETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred ECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 345555555444433111 123678999999997 332 223334565 4778889999999987543
No 11
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=89.51 E-value=3.4 Score=27.32 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=28.8
Q ss_pred cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEe
Q 027923 51 VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTT 97 (217)
Q Consensus 51 ~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~ 97 (217)
....+.|.+... ...+.+.|+|.+|++|++.. ..+.|.+.|..
T Consensus 12 ~~~~~~~~l~~~----a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W 56 (81)
T PF13860_consen 12 TKGSIEYTLPED----ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW 56 (81)
T ss_dssp CEEEEEEEECSS----CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred EEEEEEEeCCCc----ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence 478888877653 24789999999999998753 22345555544
No 12
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=85.52 E-value=5.6 Score=27.79 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=36.4
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecccc--ceEEEEe--cccceeeEEEEeCC
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTY--GQFAFTT--HEAGNYLACFWVDG 111 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~--~~~~f~~--~~~G~y~iCf~n~~ 111 (217)
+..+.+.|... ...+.+.|+|.+|+++|+..-... ...++.. ...|.|.+=+.+.+
T Consensus 36 ~~~l~I~F~~~------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~ 95 (106)
T PF11589_consen 36 GNNLSIEFESP------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGN 95 (106)
T ss_dssp TTEEEEEESS--------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECT
T ss_pred CCEEEEEEcCC------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCC
Confidence 56677777422 347999999999999998754432 2355555 46899999998754
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=84.56 E-value=4.2 Score=28.14 Aligned_cols=70 Identities=7% Similarity=0.019 Sum_probs=28.5
Q ss_pred eeEEEEEcCCCcceE--eeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEE
Q 027923 29 DAIWLNLPATGTKCV--SEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLAC 106 (217)
Q Consensus 29 ~~l~~~l~~~~~~Cf--~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iC 106 (217)
+.+.+.+.++ .|- ...+++|+.+.+.+.-.+.. .-++.+.+ ...-..-..-....+.|++..+|+|.+=
T Consensus 21 ~~v~I~~~~~--~f~P~~i~v~~G~~v~l~~~N~~~~-----~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 21 QTVTITVTDF--GFSPSTITVKAGQPVTLTFTNNDSR-----PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ---------E--EEES-EEEEETTCEEEEEEEE-SSS------EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEEEB
T ss_pred ccccccccCC--eEecCEEEEcCCCeEEEEEEECCCC-----cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEEEE
Confidence 4455555433 333 23567788787776544321 23344433 1111111111245678888999999975
Q ss_pred E
Q 027923 107 F 107 (217)
Q Consensus 107 f 107 (217)
.
T Consensus 92 C 92 (104)
T PF13473_consen 92 C 92 (104)
T ss_dssp -
T ss_pred c
Confidence 4
No 14
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.33 E-value=7 Score=32.74 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=39.5
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecc----ccceEEEEec---------ccceeeEEEEe
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENV----TYGQFAFTTH---------EAGNYLACFWV 109 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~----~~~~~~f~~~---------~~G~y~iCf~n 109 (217)
+..+.+.|............+.+.|+|.+|++|++-... +.|.+.|... ..|.|+|=...
T Consensus 148 g~~~~~~~~l~~~~~~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 148 NNKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred CCceEEEEeccccccccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 335666665543211123479999999999999876433 2477777753 26899998853
No 15
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=81.42 E-value=8.7 Score=30.91 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=39.5
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeec--cccceEEEEec---------ccceeeEEEEe
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNREN--VTYGQFAFTTH---------EAGNYLACFWV 109 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~--~~~~~~~f~~~---------~~G~y~iCf~n 109 (217)
+....+.|...+. ...+.+.|+|.+|++|++-.. .+.|.+.|... .+|.|++=+..
T Consensus 112 ~~~~~~~~~l~~~----a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 112 GGTTPFGVELPSA----ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CCceEEEEEcCCC----CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 3456677765543 247999999999999986543 44677777553 37899998864
No 16
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=80.88 E-value=32 Score=32.24 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=48.1
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEeCCCCCC---CCeEEEEEEEe
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPG---GGDVSVNIDWK 126 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n~~~~~~---~~~~~v~f~~~ 126 (217)
|+.+.+.-.+.++ .+..+.+.|+. +|+.+...+-.....+.|++..+|.|++=+...+..+. ...+.|.+.+.
T Consensus 401 G~~i~i~v~a~gg---~~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 401 GEEIKIRVIAEGG---TNLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred CCeEEEEEEecCC---CeEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 4455554433322 24566677766 77777666666678999999999999998876554432 24577777664
No 17
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=80.79 E-value=19 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=25.2
Q ss_pred eEEEEEECCCCCeeeeeecc-ccce-EEEEec-----ccceeeEEEEe
Q 027923 69 TISVKVTSPYGNNLHNRENV-TYGQ-FAFTTH-----EAGNYLACFWV 109 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~~~~~-~~~~-~~f~~~-----~~G~y~iCf~n 109 (217)
.-.+.+++|+|..+...... .+++ ..+..+ ..|.|.+=+..
T Consensus 61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~Wrv 108 (127)
T COG2372 61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRV 108 (127)
T ss_pred cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEE
Confidence 45688899999987654322 1221 223332 56999988764
No 18
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=79.69 E-value=9.6 Score=30.62 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=39.1
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEec---------ccceeeEEEEe
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTH---------EAGNYLACFWV 109 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~---------~~G~y~iCf~n 109 (217)
+..+.+.|...+. ...+.+.|+|.+|++|++... +.|.+.|... ..|.|+|=..-
T Consensus 110 g~~~~~~~~l~~~----a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 110 GTPVTISPNPAAD----ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred CceeEEEEeccCC----CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 5577777776653 247999999999999987654 3455555443 36899998864
No 19
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=79.36 E-value=27 Score=27.02 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=37.6
Q ss_pred cceEeeeccCC--cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeee-eeccccceEEEEe---cccceeeEEEEeCC
Q 027923 40 TKCVSEEIQNN--VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHN-RENVTYGQFAFTT---HEAGNYLACFWVDG 111 (217)
Q Consensus 40 ~~Cf~~~v~~~--~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~-~~~~~~~~~~f~~---~~~G~y~iCf~n~~ 111 (217)
.-+|+.+-.-| +.+.+.+... ....+.+.+|+|+.+.. ..+.......+.. .+.|.+++.+.|.+
T Consensus 18 ~gtv~ID~tvG~~T~f~v~w~~~-------~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~ 88 (179)
T PF09315_consen 18 TGTVYIDSTVGNNTVFTVTWQNS-------SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTS 88 (179)
T ss_pred EeEEEECCCCCCCeEEEEEECCC-------CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCC
Confidence 45555544433 4555544322 14567799999998865 2223233334444 46799999986643
No 20
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=78.82 E-value=4.3 Score=26.41 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=28.4
Q ss_pred ceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEe
Q 027923 68 PTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 68 ~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
....+.+.+.++.......-..+|.|.|..-..|.|.+=+.-
T Consensus 15 ~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~ 56 (82)
T PF13620_consen 15 PGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSA 56 (82)
T ss_dssp TT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEB
T ss_pred CCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEE
Confidence 367788888777776665555699999996666999999964
No 21
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=78.12 E-value=3.4 Score=30.31 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=21.9
Q ss_pred EEEecccceeeEEEEeCCCCCCCCeEEEEEEE
Q 027923 94 AFTTHEAGNYLACFWVDGHNPGGGDVSVNIDW 125 (217)
Q Consensus 94 ~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f~~ 125 (217)
++.++..|.|-++|+|+-+.+ ..|++...+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~--rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWF--RSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCcceeE--EeeEEEEEE
Confidence 567788999999998865443 356776654
No 22
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=77.03 E-value=15 Score=22.74 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=32.7
Q ss_pred CceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEeCCC--CCCCCeEEEEEEE
Q 027923 67 SPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGH--NPGGGDVSVNIDW 125 (217)
Q Consensus 67 ~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n~~~--~~~~~~~~v~f~~ 125 (217)
+......+.+.+++-+......+ ..+|+...+|.|++-+...+. .+......+.|.|
T Consensus 7 ~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 7 NIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp TEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred ceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 44666777777766544433222 889999999999999875432 2222235665554
No 23
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=76.01 E-value=12 Score=30.74 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=39.4
Q ss_pred cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEecc---------cceeeEEEEe
Q 027923 51 VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTTHE---------AGNYLACFWV 109 (217)
Q Consensus 51 ~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~~---------~G~y~iCf~n 109 (217)
..+.+.|.+... ...+.+.|+|.+|++|++.. ..+.|.+.|.... .|.|+|=+..
T Consensus 128 ~~~~~~~~l~~~----a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 128 ELIALKLYFPED----SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred ceeEEEEecCCc----CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 466777766543 23799999999999998764 3345777776643 6999999863
No 24
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=73.91 E-value=17 Score=22.74 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=32.4
Q ss_pred eEEEEEECCCCCeeee--eeccccceEEEEecccceeeEEEEe
Q 027923 69 TISVKVTSPYGNNLHN--RENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~--~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
.+.|.+++.++..+.. ..-...|.+.|.--..|.|.+=...
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~ 45 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETK 45 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEE
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEE
Confidence 4678888888887664 4444589999999899999998875
No 25
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=73.21 E-value=14 Score=26.50 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=29.9
Q ss_pred cCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEe
Q 027923 48 QNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 48 ~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
..|+.+.+.+.+.-...-.+..+.+.|++.+|..++..... .....+.....|.|++++.-
T Consensus 32 ~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t~-~~~~~~~~~~~g~~~~~~~i 92 (142)
T PF14524_consen 32 ESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNTY-DSGFPIPLSEGGTYEVTFTI 92 (142)
T ss_dssp ETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEHH-HHT--EEE-TT-EEEEEEEE
T ss_pred eCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECcc-ccCccccccCCCEEEEEEEE
Confidence 34555555444443221224688999999999888763322 22233333336666666654
No 26
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=68.71 E-value=23 Score=28.62 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred EEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEec---------ccceeeEEEEe
Q 027923 52 VVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTTH---------EAGNYLACFWV 109 (217)
Q Consensus 52 ~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~---------~~G~y~iCf~n 109 (217)
...+.|...+. ...+.+.|+|.+|++|++.+ ..+.|.+.|+.. ..|.|++=+.-
T Consensus 117 ~~~~~~~l~~~----a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 117 ATPFGIDLQGD----ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred ceeEEEecCCc----CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 44555655432 34799999999999998754 344677777653 35899999864
No 27
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.15 E-value=27 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.367 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKTK 170 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~r 170 (217)
++.|...++.|..++..+..+..-++.-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665543
No 28
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=64.12 E-value=51 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=28.9
Q ss_pred EeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCC-CCeeee
Q 027923 43 VSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPY-GNNLHN 84 (217)
Q Consensus 43 f~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~-g~~v~~ 84 (217)
|.-.+..|+.+.+..++...+.+ ...+++.+.+++ |+++.+
T Consensus 77 f~~PV~~gdtl~~~~~v~~~~~~-~~~~~~~~~nq~~g~~V~~ 118 (126)
T cd03447 77 FVGMVLPNDELEVRLEHVGMVDG-RKVIKVEARNEETGELVLR 118 (126)
T ss_pred EcccCcCCCEEEEEEEEEEEeCC-eEEEEEEEEECCCCCEEEE
Confidence 66677779999998888764322 347777888887 776543
No 29
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=63.46 E-value=62 Score=24.42 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCc-ceEeeeccCCcEEEEEEEEeeC
Q 027923 27 VSDAIWLNLPATGT-KCVSEEIQNNVVVLADYVVVSD 62 (217)
Q Consensus 27 ~~~~l~~~l~~~~~-~Cf~~~v~~~~~i~~~y~v~~~ 62 (217)
.....-|.+.||.. .-|-+.+. .-...++|.+..|
T Consensus 22 e~~t~eFdvkP~G~~~t~~~~~~-~~~C~FTYAaqGG 57 (158)
T PF10572_consen 22 EPTTKEFDVKPGGVVHTFSESLG-KYKCTFTYAAQGG 57 (158)
T ss_pred cccceeEEecCCCEEEEeEEecC-ceEEEEEEEecCC
Confidence 44667799999976 33333333 5567888877743
No 30
>PRK15396 murein lipoprotein; Provisional
Probab=63.20 E-value=41 Score=22.26 Aligned_cols=45 Identities=11% Similarity=0.364 Sum_probs=27.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRV 185 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv 185 (217)
.+++.|...++.|......+..+..-++.--..-.+-++..|.|+
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777666654333333444444443
No 31
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=62.22 E-value=27 Score=28.05 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.2
Q ss_pred ceEEEEEECCCCCeeeeee--ccccceEEEEecc---------cceeeEEEE
Q 027923 68 PTISVKVTSPYGNNLHNRE--NVTYGQFAFTTHE---------AGNYLACFW 108 (217)
Q Consensus 68 ~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~~---------~G~y~iCf~ 108 (217)
..+.+.|+|.+|++|++.. ..+.|.+.|.... .|.|++-..
T Consensus 122 ~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~ 173 (221)
T PRK12634 122 GFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTAT 173 (221)
T ss_pred CeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 4789999999999998764 3446777777643 599999995
No 32
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=61.82 E-value=27 Score=24.78 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=25.5
Q ss_pred CCCcceEeeeccCCc--EEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee
Q 027923 37 ATGTKCVSEEIQNNV--VVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR 85 (217)
Q Consensus 37 ~~~~~Cf~~~v~~~~--~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~ 85 (217)
.+...++...+.+|. +|++-|. ..+ +...+++.|++|+|..+.+.
T Consensus 56 ~~~~~~~tv~L~aG~yyPiRi~~~-N~~---g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 56 TGASKSVTVYLTAGTYYPIRIVYA-NGG---GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp S-SEEEEEEEE-TT-BEEEEEEEE-E-S---S-EEEEEEEEETT-S--B--
T ss_pred CCCceEEEEEEECCcEEEEEEEEE-cCC---CceEEEEEEECCCCcEEecC
Confidence 445678888888886 5566552 322 24589999999999987654
No 33
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=59.86 E-value=60 Score=24.55 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=36.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWY 188 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~ 188 (217)
+...+.+..+.++|.+....+++-.......-+|.+.+..=...+..+.
T Consensus 51 ~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~l 99 (156)
T PF08372_consen 51 SRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATAL 99 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHH
Confidence 3455678888889998888888888888888888877765444444443
No 34
>PF15284 PAGK: Phage-encoded virulence factor
Probab=59.48 E-value=5.5 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=11.6
Q ss_pred CcccccccchhhHHHHHHHHHH
Q 027923 1 MAKIANVHGEVLFPVFFAFYFT 22 (217)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (217)
|+|+++ ++|++.|++..+
T Consensus 1 Mkk~ks----ifL~l~~~LsA~ 18 (61)
T PF15284_consen 1 MKKFKS----IFLALVFILSAA 18 (61)
T ss_pred ChHHHH----HHHHHHHHHHHh
Confidence 778877 466666665443
No 35
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.18 E-value=45 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLL 165 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~ 165 (217)
+..++..++.+.+.+..+.....
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~ 30 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDA 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444433
No 36
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.71 E-value=84 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=22.4
Q ss_pred eeccCCcEEEEEEEEeeCCCCCCceEEEEEEC
Q 027923 45 EEIQNNVVVLADYVVVSDDHSHSPTISVKVTS 76 (217)
Q Consensus 45 ~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~ 76 (217)
..+..|+.+.++|.+...|. ..-.++.+.|
T Consensus 32 ~~~v~g~~v~V~~~iyN~G~--~~A~dV~l~D 61 (181)
T PF05753_consen 32 KYLVEGEDVTVTYTIYNVGS--SAAYDVKLTD 61 (181)
T ss_pred ccccCCcEEEEEEEEEECCC--CeEEEEEEEC
Confidence 34556899999999886543 4577888888
No 37
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=58.04 E-value=51 Score=26.38 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=37.5
Q ss_pred cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEec------ccceeeEEEEe
Q 027923 51 VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTTH------EAGNYLACFWV 109 (217)
Q Consensus 51 ~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~------~~G~y~iCf~n 109 (217)
....+.|...+. ...+.+.|+|.+|++ ++.. ..+.|.+.|+.. ..|.|++=+..
T Consensus 110 ~~~~~~~~L~~~----a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a 171 (218)
T PRK09619 110 DPVAGRLTLKHP----APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVS 171 (218)
T ss_pred CeeEEEEecCCc----CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEE
Confidence 456677775543 347999999999997 4432 234577777764 36999999864
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.33 E-value=35 Score=23.89 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=26.3
Q ss_pred hhhcccchH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHH
Q 027923 138 ARKEKLEGV-------ELELRKLEGAVEAI--HENLLYLKTKEAEMREVSEKTNSRV 185 (217)
Q Consensus 138 ~~~~~~~~l-------~~~l~~l~~~l~~i--~~~q~~~~~re~~~r~~~es~~~rv 185 (217)
+++++++.+ +.+++.++..+.++ +++..-++..-.+.+.....++.++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555 55555566555555 4444555555555555555555554
No 39
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=56.68 E-value=52 Score=30.93 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=41.2
Q ss_pred eccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEe
Q 027923 46 EIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 46 ~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
++-.|+.+.+.-.+...+ +...-..|.+.+++|.....+.-.....|++++..+|.|++=...
T Consensus 202 ~~i~~~eI~f~~~a~~~~-g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~V 264 (667)
T PRK14081 202 ELICDEELVFEVESVYEE-DRTILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLV 264 (667)
T ss_pred ceecCcEEEEEEEEEeCC-CceEEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEE
Confidence 333355555554444322 223456666777888777666666678999999999999986544
No 40
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=56.64 E-value=59 Score=21.93 Aligned_cols=46 Identities=11% Similarity=0.322 Sum_probs=31.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVA 186 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~ 186 (217)
.+++.+...++.|..+...+..+.+-.+.--..-.+.++..|.|+=
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566777778888877777777777666555555555566666653
No 41
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=55.34 E-value=65 Score=31.78 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=32.7
Q ss_pred CceEEEEEECCCCCeeeee-eccccc--eEEEEecccceeeEEEEeCC
Q 027923 67 SPTISVKVTSPYGNNLHNR-ENVTYG--QFAFTTHEAGNYLACFWVDG 111 (217)
Q Consensus 67 ~~~i~~~v~~p~g~~v~~~-~~~~~~--~~~f~~~~~G~y~iCf~n~~ 111 (217)
..++...+.||+|+..-.. ....++ +..|++.+.|.|++|+.+..
T Consensus 882 ~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~ 929 (1113)
T KOG0518|consen 882 SQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKD 929 (1113)
T ss_pred ccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecC
Confidence 4589999999999864222 222344 45888999999999998644
No 42
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=54.73 E-value=27 Score=23.60 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=22.4
Q ss_pred CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee
Q 027923 50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR 85 (217)
Q Consensus 50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~ 85 (217)
|+.+...+.+.......+..+++.|.|.+|+++.+.
T Consensus 11 g~~V~sp~~V~G~A~~FEgtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 11 GDTVSSPVKVSGKARVFEGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred cCCcCCCEEEEEEEEEeeeEEEEEEEcCCCcEEEEe
Confidence 444444444443322234589999999999998543
No 43
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=50.92 E-value=1.3e+02 Score=24.40 Aligned_cols=23 Identities=9% Similarity=0.207 Sum_probs=10.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Q 027923 187 WYSLMSLGVCIVVSGVQVWHLKRF 210 (217)
Q Consensus 187 ~~si~~~~vli~~~~~Qv~~lk~f 210 (217)
||..+-+++ +++.++-++.+=|+
T Consensus 228 ~~~~~~i~~-v~~~Fi~mvl~iri 250 (251)
T PF09753_consen 228 CWTWLMIFV-VIIVFIMMVLFIRI 250 (251)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhee
Confidence 455443333 33344445544443
No 44
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=49.79 E-value=1.3e+02 Score=23.96 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHH----HHhhHHHHHHHHHHHHHHHHHH
Q 027923 142 KLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTN-SRVAW----YSLMSLGVCIVVSGVQVWHLKR 209 (217)
Q Consensus 142 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~-~rv~~----~si~~~~vli~~~~~Qv~~lk~ 209 (217)
+++.++..+.+++-.+..++...+-.+.|-.-..-..-... +.+.| |+=.+.+.+.+++.+..|+.|.
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slymfrw 88 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYMFRW 88 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHHHHH
Confidence 34455666666665555555555444444332211111111 33333 4445555555555555655553
No 45
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=48.71 E-value=24 Score=28.54 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=31.0
Q ss_pred cCCcEEEEEEEEeeCCCC----CCceEEEEEECCCCCeeeeeeccc---c-ceEEE--EecccceeeEEEEe
Q 027923 48 QNNVVVLADYVVVSDDHS----HSPTISVKVTSPYGNNLHNRENVT---Y-GQFAF--TTHEAGNYLACFWV 109 (217)
Q Consensus 48 ~~~~~i~~~y~v~~~~~~----~~~~i~~~v~~p~g~~v~~~~~~~---~-~~~~f--~~~~~G~y~iCf~n 109 (217)
+.+-.+.+.|.-..++.. .-..+++.|+|.+|+.+....... . +.|.. .....|.|+++.-.
T Consensus 5 ~~~~~l~f~y~~~~~~~~~~~~~v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~ 76 (283)
T PF08842_consen 5 PGGLTLKFSYDYNMGNADAFEDEVKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWG 76 (283)
T ss_dssp ---EEEEEE---STT-S--HHHH--EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEE
T ss_pred CceEEEEEEEeCCccccccccceEeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEE
Confidence 345566666654411110 133899999999999665433221 2 45554 22457999999865
No 46
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=48.50 E-value=1.2e+02 Score=23.26 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 027923 147 ELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSL 193 (217)
Q Consensus 147 ~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~ 193 (217)
......+...+..++.+..-+.....+....++...+|+.|.+++-+
T Consensus 56 ~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l 102 (180)
T PF04678_consen 56 NSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALL 102 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888887777777888888888887554433
No 47
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=48.32 E-value=62 Score=19.74 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=25.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSR 184 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~r 184 (217)
+.++.++..+..|......|..+..-.-..-++....++.+..+
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 45667777777777777777666555444444443444444433
No 48
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.21 E-value=1.9e+02 Score=25.34 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=33.0
Q ss_pred cEEEEEEEEeeCC-CCCCceEEEEEECCCCCeeeeeeccccceEEEEe----cccceeeEEEE
Q 027923 51 VVVLADYVVVSDD-HSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTT----HEAGNYLACFW 108 (217)
Q Consensus 51 ~~i~~~y~v~~~~-~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~----~~~G~y~iCf~ 108 (217)
-.+.+.|.-...- ++....+.+.+.+|++..++.....+ |...+ ...|.|+.=+.
T Consensus 52 vpvdvlYD~~~y~isg~~etV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~ 111 (403)
T COG4856 52 VPVDVLYDSDKYFISGQPETVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQ 111 (403)
T ss_pred ceeEEEEccccccccCCceEEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeE
Confidence 3566666532211 12245899999999998887665443 54444 34566666654
No 49
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=47.34 E-value=1e+02 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=30.1
Q ss_pred ce-EeeeccCCcEEEEEEEEeeCCC---C--CCceEEEEEECCCCCeeeeee
Q 027923 41 KC-VSEEIQNNVVVLADYVVVSDDH---S--HSPTISVKVTSPYGNNLHNRE 86 (217)
Q Consensus 41 ~C-f~~~v~~~~~i~~~y~v~~~~~---~--~~~~i~~~v~~p~g~~v~~~~ 86 (217)
.| |...+..|+.+.+..++.+... + +-..+...+++.+|+.+.+.+
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~ 135 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGE 135 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEE
Confidence 44 5567888999999999875321 1 112456666788888776543
No 50
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.88 E-value=76 Score=20.33 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 145 GVELELRKLEGAVEAIHENLLYLKTKEA 172 (217)
Q Consensus 145 ~l~~~l~~l~~~l~~i~~~q~~~~~re~ 172 (217)
.+.+.+.+++..++++.+..+-+..+.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~ 30 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDA 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444433
No 51
>PF14109 GldH_lipo: GldH lipoprotein
Probab=46.80 E-value=1.1e+02 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=27.1
Q ss_pred CceEEEEEECCCCCeeeeeec-cccceEE----EEecccceeeEEEE
Q 027923 67 SPTISVKVTSPYGNNLHNREN-VTYGQFA----FTTHEAGNYLACFW 108 (217)
Q Consensus 67 ~~~i~~~v~~p~g~~v~~~~~-~~~~~~~----f~~~~~G~y~iCf~ 108 (217)
...+++.+.||+|+.+-+.-. ..+.++- +..+.+|.|+|.+.
T Consensus 67 ~dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~ 113 (131)
T PF14109_consen 67 TDTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIE 113 (131)
T ss_pred eeeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEE
Confidence 347888888888887654322 2233332 34467899999986
No 52
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=45.36 E-value=1.3e+02 Score=22.62 Aligned_cols=51 Identities=10% Similarity=0.257 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 027923 145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGV 195 (217)
Q Consensus 145 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~v 195 (217)
.+...-..+.++...+...-.-+-..+.+....++++.+++.+|.-++-+.
T Consensus 32 ~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~it 82 (157)
T PF04136_consen 32 ELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPIT 82 (157)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 333344444444444444445556677888889999999999998887654
No 53
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=1.5e+02 Score=23.39 Aligned_cols=158 Identities=12% Similarity=0.086 Sum_probs=82.9
Q ss_pred cceeEEEEEcCCCcceEe-eeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecc---cce
Q 027923 27 VSDAIWLNLPATGTKCVS-EEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHE---AGN 102 (217)
Q Consensus 27 ~~~~l~~~l~~~~~~Cf~-~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~---~G~ 102 (217)
.-++++-+++.+...|-+ ..|..|..+.+.|.+.+++ | ..|--.=.-..+...+..++ .|.|+|=... +-.
T Consensus 32 aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPd-g--kvI~~~~kk~~~~~~f~ae~--~G~Y~fCFsN~fstf~ 106 (209)
T KOG1693|consen 32 AKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPD-G--KVIYSEKKKRYDSFLFKAEG--KGEYTFCFSNEFSTFS 106 (209)
T ss_pred chhheeeecccCCceEEEEEEEEeCCceeeEEEEECCC-C--CEEeeccccccccEEEEEec--ceEEEEEecCcccccc
Confidence 348899999987774544 4888899999999988754 1 12211111122233444333 5666553321 112
Q ss_pred eeEEEEeCCCCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 027923 103 YLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIH--ENLLYLKTKEAEMREVSEK 180 (217)
Q Consensus 103 y~iCf~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~--~~q~~~~~re~~~r~~~es 180 (217)
+++-.. +....... ...-+....+.....-++-++.+++.|+.+.+.....+ ..+++.+....++|-+.=|
T Consensus 107 ~Kiv~~-~~q~~~~~------~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~S 179 (209)
T KOG1693|consen 107 HKIVYM-DFQVGEEP------PLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWS 179 (209)
T ss_pred ceEeee-hhhhcccc------ccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHH
Confidence 222211 11110000 11111111222222223446788999999988876554 4556666666677777666
Q ss_pred HhHH--HHHHHhhHHHHH
Q 027923 181 TNSR--VAWYSLMSLGVC 196 (217)
Q Consensus 181 ~~~r--v~~~si~~~~vl 196 (217)
.... ++..|++|+.++
T Consensus 180 l~e~~~vv~iSi~Qv~il 197 (209)
T KOG1693|consen 180 LLEIIAVVVISIAQVFIL 197 (209)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 6655 444566666654
No 54
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=44.23 E-value=94 Score=20.65 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=15.7
Q ss_pred ceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCC
Q 027923 41 KCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYG 79 (217)
Q Consensus 41 ~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g 79 (217)
.+....+++|+.....+.+... ..-.++.|..|+|
T Consensus 47 ~~~~~~v~ag~~~~~~w~l~~s----~gwYDl~v~~~~~ 81 (89)
T PF05506_consen 47 GPWTYTVAAGQTVSLTWPLAAS----GGWYDLTVTGPNG 81 (89)
T ss_pred CCEEEEECCCCEEEEEEeecCC----CCcEEEEEEcCCC
Confidence 3444455555555444443211 1144455555554
No 55
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.71 E-value=1.8e+02 Score=23.57 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=15.1
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENL 164 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q 164 (217)
.++++.++..+.++...-..|..+.
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~EL 175 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEEL 175 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566777777777665555555433
No 56
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=42.54 E-value=1.2e+02 Score=21.43 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=29.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSR 184 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~r 184 (217)
+.++.++..+..+...+..++.+...+.+-....|--++....|
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 34567788888888888888887777665544454444555444
No 57
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.82 E-value=65 Score=28.28 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Q 027923 145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWH 206 (217)
Q Consensus 145 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~ 206 (217)
++..+++-|+.+++.+.+..+.++.. ++++...++-||-++-+++-++..++|++.
T Consensus 337 eI~qRv~vLN~kl~~i~~~~~~l~e~------ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~ 392 (399)
T KOG2861|consen 337 EIGQRVNVLNYKLKVIEDLLDILQEN------LNERHSERLEWIIIILIAFEVAIEIYQIVV 392 (399)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH------hhhccccceehhhHHHHHHHHHHHHHHHHH
Confidence 36667777888888888888777754 446677789999999999989999988753
No 58
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=41.42 E-value=78 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=31.5
Q ss_pred hHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027923 135 ESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTN 182 (217)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~ 182 (217)
+.+.+-.+-+.+++.+.+..+.+..++.+.+-++.+-+..........
T Consensus 33 ~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 33 DALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444555678888888888888888887777666655555544433
No 59
>PRK02710 plastocyanin; Provisional
Probab=41.19 E-value=1.3e+02 Score=21.33 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=34.9
Q ss_pred cceeEEEEEcCCC-cceEe---eeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee-eccccceEEEEecccc
Q 027923 27 VSDAIWLNLPATG-TKCVS---EEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR-ENVTYGQFAFTTHEAG 101 (217)
Q Consensus 27 ~~~~l~~~l~~~~-~~Cf~---~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~-~~~~~~~~~f~~~~~G 101 (217)
.+...++.+.... .-.|. ..++.|+.|.. . +.++.++ ++ .+.+.. ..-.+. ...+...++++...+|
T Consensus 27 ~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~~--~-N~~~~~H--~v--~~~~~~-~~~~~~~~~~pg~t~~~tF~~~G 98 (119)
T PRK02710 27 SAETVEVKMGSDAGMLAFEPSTLTIKAGDTVKW--V-NNKLAPH--NA--VFDGAK-ELSHKDLAFAPGESWEETFSEAG 98 (119)
T ss_pred ccceEEEEEccCCCeeEEeCCEEEEcCCCEEEE--E-ECCCCCc--eE--EecCCc-cccccccccCCCCEEEEEecCCE
Confidence 3455666664332 33555 35677887544 2 3222121 22 222221 111111 1223445777777799
Q ss_pred eeeEEEE
Q 027923 102 NYLACFW 108 (217)
Q Consensus 102 ~y~iCf~ 108 (217)
.|.+=..
T Consensus 99 ~y~y~C~ 105 (119)
T PRK02710 99 TYTYYCE 105 (119)
T ss_pred EEEEEcC
Confidence 9986553
No 60
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=41.08 E-value=1.5e+02 Score=29.40 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=34.3
Q ss_pred eEEEEEECCCCCeeeeeeccccc--eEEEEecccceeeEEEEeCCCCCCCCeEEEEE
Q 027923 69 TISVKVTSPYGNNLHNRENVTYG--QFAFTTHEAGNYLACFWVDGHNPGGGDVSVNI 123 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~~~~~~~~--~~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f 123 (217)
.+.+.+.+|+..-+-- ++.++| +..|+++++|.|.+-+.-.+.+-..++-+|..
T Consensus 790 gLsi~~~Gpskvd~~~-~d~~dGt~kV~ytPtepG~Y~I~i~Fad~~I~gSPftVkv 845 (1113)
T KOG0518|consen 790 GLSISVQGPSKVDLNV-EDREDGTCKVSYTPTEPGTYIINIKFADEHIKGSPFTVKV 845 (1113)
T ss_pred ceEEEEeCCcccccce-eecCCCeEEEEEeCCCCceEEEEEEEcCccCCCCceEEEe
Confidence 6889999999433322 223344 67899999999999987544432223444433
No 61
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=41.00 E-value=1.4e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=18.9
Q ss_pred ccceEEEEecccceeeEEEEeC
Q 027923 89 TYGQFAFTTHEAGNYLACFWVD 110 (217)
Q Consensus 89 ~~~~~~f~~~~~G~y~iCf~n~ 110 (217)
.+|++.......|.|-+-|.|+
T Consensus 86 ~~Gki~Wk~~~kG~Y~v~l~n~ 107 (131)
T PF10794_consen 86 EEGKIIWKNGRKGKYIVFLPNG 107 (131)
T ss_pred CCCcEEEecCCcceEEEEEcCC
Confidence 3788999999999999999764
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.71 E-value=1.3e+02 Score=21.20 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLK 168 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~ 168 (217)
++.++..+..+...+..++.....+-
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~ 35 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELL 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 63
>PF12669 P12: Virus attachment protein p12 family
Probab=40.24 E-value=35 Score=21.14 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=6.4
Q ss_pred HHHHhhhcc
Q 027923 207 LKRFFQKKK 215 (217)
Q Consensus 207 lk~fF~~kk 215 (217)
+|++++++|
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488887764
No 64
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.72 E-value=90 Score=19.17 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKT 169 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~ 169 (217)
++.++..+.++...+..++++..-++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665554443
No 65
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.05 E-value=1.5e+02 Score=26.78 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=37.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 027923 142 KLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMS 192 (217)
Q Consensus 142 ~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~ 192 (217)
.++.-..+|+.+.+.+.+++.++----.+-++++....+.+.|++.-.+.+
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888887776667777788888888999988755544
No 66
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=38.92 E-value=54 Score=20.05 Aligned_cols=29 Identities=14% Similarity=0.495 Sum_probs=19.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 027923 184 RVAWYSLMSLGVCIVVSGVQVWHLKRFFQKK 214 (217)
Q Consensus 184 rv~~~si~~~~vli~~~~~Qv~~lk~fF~~k 214 (217)
-+.||+.+-+++.++.+.|- .+|.||++|
T Consensus 7 ~lLyFctvVcaLYLvsGGyk--~IRnY~r~K 35 (59)
T PF07125_consen 7 ILLYFCTVVCALYLVSGGYK--VIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHhccHH--HHHHHHHHH
Confidence 45666666666666666654 468888765
No 67
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=37.33 E-value=1.4e+02 Score=20.56 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 027923 173 EMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFF 211 (217)
Q Consensus 173 ~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF 211 (217)
.....+..+-+-+-.|-+.-++.+++.-+ +-.||.+|
T Consensus 60 e~k~~n~Knir~~KmwilGlvgTi~gsli--ia~lr~~f 96 (98)
T PF11166_consen 60 ENKKKNDKNIRDIKMWILGLVGTIFGSLI--IALLRTIF 96 (98)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 44444445444466777766666554433 34455555
No 68
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=37.32 E-value=1.8e+02 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHH
Q 027923 144 EGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGV 202 (217)
Q Consensus 144 ~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vli~~~~~ 202 (217)
.++...|.+|+.++.......+ +.+.+..+..+|++.+|++-.++-+....|
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~-------~~qs~l~~~~~r~tv~slAl~~l~~S~iy~ 62 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALK-------KSQSILSQWQSRLTVYSLALTVLALSYIYW 62 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3555566666555544433322 233444555566666665544443333333
No 69
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=37.07 E-value=1.5e+02 Score=20.80 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=28.9
Q ss_pred EeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee
Q 027923 43 VSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR 85 (217)
Q Consensus 43 f~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~ 85 (217)
|.-.+..|+.+.+.-.+.+...+.-..+.+.+.+++|+.+.+.
T Consensus 76 f~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g 118 (123)
T cd03455 76 LGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNSEGDHVMAG 118 (123)
T ss_pred eeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEEEeE
Confidence 3335677999999998886421112357777889999876543
No 70
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=36.78 E-value=88 Score=18.19 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=11.1
Q ss_pred HHHhHHHHHHHhhHHHHHHHHHH
Q 027923 179 EKTNSRVAWYSLMSLGVCIVVSG 201 (217)
Q Consensus 179 es~~~rv~~~si~~~~vli~~~~ 201 (217)
+.--+-..|.+++-+++++.+++
T Consensus 19 ~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 19 DGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555543
No 71
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=36.00 E-value=51 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=28.3
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 027923 181 TNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQK 213 (217)
Q Consensus 181 ~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~ 213 (217)
.+-|..+++.+-.+++++++++|++.+-+--..
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~ 59 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR 59 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 677899999999999999999999987665554
No 72
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=35.82 E-value=56 Score=27.72 Aligned_cols=55 Identities=16% Similarity=0.375 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH
Q 027923 145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205 (217)
Q Consensus 145 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~ 205 (217)
++..+++-|+.+++-|.+..+.+.. .++++...++-||-++-+++-+++++++++
T Consensus 270 dI~~RvnvLN~Rl~vi~d~l~il~e------~ln~~~s~~lEWivIiLI~~eVllsl~~i~ 324 (331)
T COG1723 270 DINPRVNVLNRRLEVISDLLDILNE------QLNHSHSTRLEWIVIILIGLEVLLSLYNII 324 (331)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH------HhhhcccceeEEEehhHHHHHHHHHHHHHH
Confidence 4566677777777777776665543 455777889999999999999999987765
No 73
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.49 E-value=1.8e+02 Score=23.59 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=22.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTK 170 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 170 (217)
+++-.++.+|.+++..++.+..+++++..+
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344478888888888888888888887655
No 74
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=34.77 E-value=1.5e+02 Score=20.34 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027923 150 LRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVA 186 (217)
Q Consensus 150 l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~ 186 (217)
.++++..+++|+.+-.--...-+..+.-......+++
T Consensus 41 ~~kld~tlD~i~reRe~dee~k~~n~Knir~~Kmwil 77 (98)
T PF11166_consen 41 NQKLDRTLDEINREREEDEENKKKNDKNIRDIKMWIL 77 (98)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555555655544433333334333344454544
No 75
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=33.74 E-value=1.1e+02 Score=19.77 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=28.0
Q ss_pred eEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEe
Q 027923 69 TISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
+.=+.|+|.+|+.+++....+-..+++ .....+++=+-|
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGn 46 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGN 46 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeC
Confidence 567888999999999877665556666 445566666654
No 76
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=33.35 E-value=3.3e+02 Score=23.80 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=26.0
Q ss_pred CceEEEEEECCCCCeeeeeeccccceEEEEe---cccceeeEEEE
Q 027923 67 SPTISVKVTSPYGNNLHNRENVTYGQFAFTT---HEAGNYLACFW 108 (217)
Q Consensus 67 ~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~---~~~G~y~iCf~ 108 (217)
...+++.+++|+|..........++...+.. .+.|.|++-..
T Consensus 241 s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~ 285 (374)
T TIGR03503 241 SLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGT 285 (374)
T ss_pred cEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEE
Confidence 3478888889999843333333344444433 35799998764
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.29 E-value=4.1e+02 Score=24.54 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=42.3
Q ss_pred EEEEcCCCcceEeeeccC----CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEec-----ccce
Q 027923 32 WLNLPATGTKCVSEEIQN----NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTH-----EAGN 102 (217)
Q Consensus 32 ~~~l~~~~~~Cf~~~v~~----~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~-----~~G~ 102 (217)
.+++|++.-+|-|--.+. .-.-+|-|.|..... .+..--+++..|.+..-.+. ......|.+. ....
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~-rdY~Tf~Wa~~p~~~~~~s~---~~~~V~F~ayyLPk~~~e~ 89 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSST-RDYYTFVWAPVPENYVEGSA---VNCQVQFQAYYLPKDDDEF 89 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCch-hheeeEEeeccCccccCCCc---cceEEEECcccCCCCCCCe
Confidence 468899999999976543 345778888876432 12223345556655321111 1223444442 3567
Q ss_pred eeEEEEe
Q 027923 103 YLACFWV 109 (217)
Q Consensus 103 y~iCf~n 109 (217)
|.||..+
T Consensus 90 YqfcYv~ 96 (546)
T PF07888_consen 90 YQFCYVD 96 (546)
T ss_pred EEEEEEC
Confidence 9999875
No 78
>PHA02650 hypothetical protein; Provisional
Probab=31.67 E-value=61 Score=21.42 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=19.1
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027923 181 TNSRVAWYSLMSLGVCIVVSGVQVWHLKR 209 (217)
Q Consensus 181 ~~~rv~~~si~~~~vli~~~~~Qv~~lk~ 209 (217)
....-+++-++-+++++++.++-..|||-
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566667777777777777774
No 79
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.67 E-value=2e+02 Score=20.40 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 027923 144 EGVELELRKLEGAVEAIHENLLYL 167 (217)
Q Consensus 144 ~~l~~~l~~l~~~l~~i~~~q~~~ 167 (217)
..++..+..+...+..++.....+
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544333
No 80
>PF13584 BatD: Oxygen tolerance
Probab=30.59 E-value=1.8e+02 Score=25.89 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=30.6
Q ss_pred eccCCcEEEEEEEEeeCCCCCCc-e-EEEEEECCCCCe---eeeee--ccccceEEEEecccceeeEE
Q 027923 46 EIQNNVVVLADYVVVSDDHSHSP-T-ISVKVTSPYGNN---LHNRE--NVTYGQFAFTTHEAGNYLAC 106 (217)
Q Consensus 46 ~v~~~~~i~~~y~v~~~~~~~~~-~-i~~~v~~p~g~~---v~~~~--~~~~~~~~f~~~~~G~y~iC 106 (217)
.+..|+.+.+.+.+.+....... . =+|.|.+|.-.. +.... ....-.|.+.+...|.|+|=
T Consensus 23 ~v~~ge~~~l~i~~~~~~~~~~~p~l~~f~v~~~~~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~IP 90 (484)
T PF13584_consen 23 EVGLGETFQLTITINGDGDDPDLPELDGFEVLGPSQSSSTSIINGKVSSSTTYTYTLQPKKTGTFTIP 90 (484)
T ss_pred EEcCCCEEEEEEEEecCcccCCCCCCCCeEEcceEEEEEEEEecCceEEEEEEEEEEEecccceEEEc
Confidence 36788999999887753211000 1 133343332211 11101 11234567777888888765
No 81
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.11 E-value=2.7e+02 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVS 178 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~ 178 (217)
++.++..+..+...+..+++...+.++-.++.|.-.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555444433333333333
No 82
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=29.92 E-value=1.6e+02 Score=19.07 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=24.5
Q ss_pred ceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEe
Q 027923 68 PTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWV 109 (217)
Q Consensus 68 ~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n 109 (217)
+.+.+.+.+++ .....+ .+|.|.+.. ..|.|.+-|+.
T Consensus 16 ~~a~V~~~~~~---~~~~Td-~~G~F~i~~-~~g~~~l~is~ 52 (88)
T PF13715_consen 16 PGATVYLKNTK---KGTVTD-ENGRFSIKL-PEGDYTLKISY 52 (88)
T ss_pred cCeEEEEeCCc---ceEEEC-CCeEEEEEE-cCCCeEEEEEE
Confidence 36667766654 112222 389999994 47999999964
No 83
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=28.94 E-value=1.8e+02 Score=19.47 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=6.0
Q ss_pred HHhHHHHHHHhh
Q 027923 180 KTNSRVAWYSLM 191 (217)
Q Consensus 180 s~~~rv~~~si~ 191 (217)
.+...++|++++
T Consensus 67 ~~D~~li~~~~~ 78 (92)
T PF03908_consen 67 KTDRILIFFAFL 78 (92)
T ss_pred HHhHHHHHHHHH
Confidence 344555555543
No 84
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=28.93 E-value=1e+02 Score=18.65 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 027923 192 SLGVCIVVSGVQVWHLKRFFQK 213 (217)
Q Consensus 192 ~~~vli~~~~~Qv~~lk~fF~~ 213 (217)
-+++.+..+++=+.+.|+|+++
T Consensus 30 ~vvv~v~gafigirlFKKf~sk 51 (52)
T PF05371_consen 30 PVVVLVTGAFIGIRLFKKFASK 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888889999999864
No 85
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=28.88 E-value=1.8e+02 Score=19.23 Aligned_cols=51 Identities=12% Similarity=0.297 Sum_probs=29.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCI 197 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vli 197 (217)
.++.+.+..+|+.++++++....| -++|.=..--|+. -+.|-.++.+++++
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~E-i~Qr~GkkvGRDi------GIlYG~viGlli~~ 64 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAE-IFQRIGKKVGRDI------GILYGLVIGLLIVL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHhhhHH------HHHHHHHHHHHHHH
Confidence 345567778888888887776666 2333333333333 35665555555543
No 86
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=28.71 E-value=2.6e+02 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=6.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHH
Q 027923 182 NSRVAWYSLMSLGVCIVVSGV 202 (217)
Q Consensus 182 ~~rv~~~si~~~~vli~~~~~ 202 (217)
.....|+..+.++++|+++++
T Consensus 148 fdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 148 FDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HCHHHHHHHHHH---------
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666555544
No 87
>PHA03054 IMV membrane protein; Provisional
Probab=28.61 E-value=78 Score=20.45 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=18.8
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027923 181 TNSRVAWYSLMSLGVCIVVSGVQVWHLK 208 (217)
Q Consensus 181 ~~~rv~~~si~~~~vli~~~~~Qv~~lk 208 (217)
..++-+++-++-++.++++.++-..|||
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566667777777777788876
No 88
>PHA02819 hypothetical protein; Provisional
Probab=28.39 E-value=83 Score=20.32 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.2
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027923 181 TNSRVAWYSLMSLGVCIVVSGVQVWHLKR 209 (217)
Q Consensus 181 ~~~rv~~~si~~~~vli~~~~~Qv~~lk~ 209 (217)
..++-+++-++-++.++++.++-..|||-
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYLK~ 69 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYLKV 69 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666677777777777888773
No 89
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=27.78 E-value=1e+02 Score=20.59 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=21.9
Q ss_pred HHhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027923 180 KTNSRVAWYSLMSLGVCIVVSGVQVWHL 207 (217)
Q Consensus 180 s~~~rv~~~si~~~~vli~~~~~Qv~~l 207 (217)
+.++-..+|.++..+++++.+.+=+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999988887766554
No 90
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.74 E-value=1.7e+02 Score=18.82 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=27.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVC 196 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vl 196 (217)
.+.+.+..+|+.++++++....| -++|.=...-|+. -+.|-.++.++++
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~E-~~Qr~Gkk~GRDi------GIlYG~viGlli~ 60 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNGE-VAQRIGKKVGRDI------GILYGLVIGLILF 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHhhhHH------HHHHHHHHHHHHH
Confidence 44566777788887777766665 2333333333333 3555555554443
No 91
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=27.73 E-value=43 Score=23.99 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.3
Q ss_pred ccceeeEEEEeCC
Q 027923 99 EAGNYLACFWVDG 111 (217)
Q Consensus 99 ~~G~y~iCf~n~~ 111 (217)
..|.|++||.-.+
T Consensus 115 P~GsYRiCFrL~~ 127 (145)
T TIGR02542 115 PEGSYRICFRLFN 127 (145)
T ss_pred CCCceEEEEEEec
Confidence 4699999997644
No 92
>PRK13791 lysozyme inhibitor; Provisional
Probab=27.58 E-value=2.3e+02 Score=20.16 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=13.8
Q ss_pred cCCCcceEeeeccCCcEEEEEEE
Q 027923 36 PATGTKCVSEEIQNNVVVLADYV 58 (217)
Q Consensus 36 ~~~~~~Cf~~~v~~~~~i~~~y~ 58 (217)
.+.+..=.......+..+.+.|.
T Consensus 25 ~~~~~~t~~YqC~~~~~l~V~y~ 47 (113)
T PRK13791 25 ASQEITKSIYTCNDNQVLEVIYV 47 (113)
T ss_pred CCCCcccEEEECCCCCeEEEEEe
Confidence 44455555555666666777775
No 93
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=27.21 E-value=2e+02 Score=19.34 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=34.4
Q ss_pred ccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEE
Q 027923 47 IQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFW 108 (217)
Q Consensus 47 v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~ 108 (217)
+.+...|.+... .++ ++-..--+.+.|++|+.--+---.++|+|.|-+. +|.+++=--
T Consensus 4 ~~ke~VItG~V~-~~G--~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaa-pG~WtvRal 61 (85)
T PF07210_consen 4 VEKETVITGRVT-RDG--EPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAA-PGSWTVRAL 61 (85)
T ss_pred ccceEEEEEEEe-cCC--cCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeC-CCceEEEEE
Confidence 344456666654 222 1223455777899998754444456888888663 566666543
No 94
>PRK14153 heat shock protein GrpE; Provisional
Probab=27.16 E-value=3.1e+02 Score=21.54 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 145 GVELELRKLEGAVEAIHENLLYLKTKEA 172 (217)
Q Consensus 145 ~l~~~l~~l~~~l~~i~~~q~~~~~re~ 172 (217)
.++..+..+.+.+.....+..-+|.|..
T Consensus 44 ~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 44 KCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333343433
No 95
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=26.82 E-value=3.4e+02 Score=21.90 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=25.5
Q ss_pred HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc
Q 027923 181 TNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKK 214 (217)
Q Consensus 181 ~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~k 214 (217)
+.+...+|--+.++++++++++-.+++=++|++-
T Consensus 210 ~ksk~s~wf~~~miI~v~~sFVsMiliiqifkkl 243 (244)
T KOG2678|consen 210 DKSKLSYWFYITMIIFVILSFVSMILIIQIFKKL 243 (244)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344467777778888888888889998988753
No 96
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=26.50 E-value=1.8e+02 Score=18.72 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=28.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 027923 141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIV 198 (217)
Q Consensus 141 ~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~vli~ 198 (217)
++.+.++++|+.++++++-...| -++|.=..--|+. -+.|-.++.++++++
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~E-i~Qr~GkkiGRDi------GIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAE-IAQRAGKKIGRDI------GILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHhHHhhhHH------HHHHHHHHHHHHHHH
Confidence 44567778888888887776666 3333333333333 355555555544443
No 97
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=2.5e+02 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=12.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENL 164 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q 164 (217)
++.++.+..++..|.+.--+|-+|.
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev 59 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEV 59 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445556666666555444444433
No 98
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=26.12 E-value=2e+02 Score=18.97 Aligned_cols=32 Identities=13% Similarity=0.357 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027923 156 AVEAIHENLLYLKTKEAEMREVSEKTNSRVAW 187 (217)
Q Consensus 156 ~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~ 187 (217)
.++++.+.-.-+......++..+...+++.+|
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555443
No 99
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=25.96 E-value=1.3e+02 Score=20.34 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=25.2
Q ss_pred eEEEEEECCCCCeeeeeeccc---cceEEEEecc---cceeeEEEEe
Q 027923 69 TISVKVTSPYGNNLHNRENVT---YGQFAFTTHE---AGNYLACFWV 109 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~~~~~~---~~~~~f~~~~---~G~y~iCf~n 109 (217)
.-.+.|.||+|+.+-...... ...+....+. .|.|.+=...
T Consensus 34 ~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrv 80 (97)
T PF04234_consen 34 FSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRV 80 (97)
T ss_dssp C-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEE
T ss_pred ccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEE
Confidence 566888899887654322111 2355555554 6999988865
No 100
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=1.4e+02 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHhhcceeEEEEEcCCCcceEee
Q 027923 11 VLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSE 45 (217)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Cf~~ 45 (217)
.+|..|++|+++.++..+.-+++.+..|..+.|.-
T Consensus 6 ~ll~~fL~l~~~slaqa~~ilTiq~ad~~~~~ft~ 40 (155)
T COG3915 6 VLLLTFLALISSSLAQAEPILTIQIADGPTVSFTL 40 (155)
T ss_pred HHHHHHHHHHhhHHhhcCceEEEEecCCCceeecH
Confidence 46667788888888876777888877777776643
No 101
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=25.62 E-value=2.1e+02 Score=20.91 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=31.5
Q ss_pred CceEEEEEECCCC-Ceeeeee-----ccccceEEEEec------ccceeeEEEEeC
Q 027923 67 SPTISVKVTSPYG-NNLHNRE-----NVTYGQFAFTTH------EAGNYLACFWVD 110 (217)
Q Consensus 67 ~~~i~~~v~~p~g-~~v~~~~-----~~~~~~~~f~~~------~~G~y~iCf~n~ 110 (217)
+..++..|++..+ +++++.+ -.|...|.|..+ .+|.|++=....
T Consensus 60 ~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 60 KLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAK 115 (140)
T ss_pred CcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEE
Confidence 4588888888876 5666543 336778888765 469999998653
No 102
>PHA02975 hypothetical protein; Provisional
Probab=25.43 E-value=1.3e+02 Score=19.34 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=19.1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027923 182 NSRVAWYSLMSLGVCIVVSGVQVWHLKR 209 (217)
Q Consensus 182 ~~rv~~~si~~~~vli~~~~~Qv~~lk~ 209 (217)
.++-++|-++-++.++++.++-..|||-
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLKL 67 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666677777777788888873
No 103
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=25.00 E-value=2.2e+02 Score=19.01 Aligned_cols=71 Identities=15% Similarity=0.297 Sum_probs=36.8
Q ss_pred ccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecc---ccc---eEEEEe---cccceeeEEEEeCCCCCCCC
Q 027923 47 IQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENV---TYG---QFAFTT---HEAGNYLACFWVDGHNPGGG 117 (217)
Q Consensus 47 v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~---~~~---~~~f~~---~~~G~y~iCf~n~~~~~~~~ 117 (217)
+..|+.+.+.-.+.+ .+. .+..+-|+|..+....+. ..| .+.+.. ...|.|+ |... |......
T Consensus 12 v~~G~~v~l~C~~~G-----~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~-C~A~-N~~G~~~ 83 (92)
T cd05866 12 LSVGESKFFTCTAIG-----EPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYR-CQAT-DAKGQTQ 83 (92)
T ss_pred EcCCCeEEEEEEEEE-----eCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEE-EEEE-cCCCcEE
Confidence 556888888877653 223 566666777665432111 122 233322 3579998 6543 2221122
Q ss_pred eEEEEEEE
Q 027923 118 DVSVNIDW 125 (217)
Q Consensus 118 ~~~v~f~~ 125 (217)
.+.+.|++
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 46666653
No 104
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=24.99 E-value=1.8e+02 Score=18.08 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.6
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENLLYLKTK 170 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~r 170 (217)
.|.++-+.+.+..|..+...+..+-.+++..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667888888999888888888887777643
No 105
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.94 E-value=2.8e+02 Score=20.29 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=34.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAW 187 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~ 187 (217)
.+.++.....++.+.+.+..+.....-...|-++.+........|++-
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888898888888777666777777777777777777544
No 106
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=24.90 E-value=26 Score=14.46 Aligned_cols=8 Identities=13% Similarity=0.418 Sum_probs=5.2
Q ss_pred CCcceEee
Q 027923 38 TGTKCVSE 45 (217)
Q Consensus 38 ~~~~Cf~~ 45 (217)
+..+||+-
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45678864
No 107
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.87 E-value=3.7e+02 Score=21.65 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=51.0
Q ss_pred HHhhcceeEEEEEcCCCc---ceEeeeccCC-cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee------cc----
Q 027923 23 INAIVSDAIWLNLPATGT---KCVSEEIQNN-VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE------NV---- 88 (217)
Q Consensus 23 ~~~~~~~~l~~~l~~~~~---~Cf~~~v~~~-~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~------~~---- 88 (217)
+|...++++.+.-++|+- --||+-- .+ ..-.+..- ++.++ ++.++++.|..|+|+-.+... +.
T Consensus 108 aFg~GSNsVeV~sadG~~rqRvQFY~~~-~g~~~arlRvv-LsWD~-d~tdlDlHvvtPdG~Hawygn~~lsngg~LDvD 184 (268)
T COG4676 108 AFGEGSNSVEVRSADGQSRQRVQFYETN-AGKTRARLRVV-LSWDT-DNTDLDLHVVTPDGDHAWYGNPVLSNGGALDVD 184 (268)
T ss_pred eccCCCCceEEECCCcchhheEEEEecC-CCccCceEEEE-EEECC-CCCceeEEEecCCCceeeecCceecCCcccCcc
Confidence 345678888888888863 3566543 33 33333332 23332 366999999999997543211 10
Q ss_pred -c----cceEEEEecccceeeEEEE
Q 027923 89 -T----YGQFAFTTHEAGNYLACFW 108 (217)
Q Consensus 89 -~----~~~~~f~~~~~G~y~iCf~ 108 (217)
. -..|+..++..|.|.+-+.
T Consensus 185 vttGyGPEifa~paP~~G~ylvYVN 209 (268)
T COG4676 185 VTTGYGPEIFAMPAPVHGTYLVYVN 209 (268)
T ss_pred cccCCCcceeccCCCCCccEEEEEE
Confidence 1 1257777888999998874
No 108
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=3.2e+02 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=24.6
Q ss_pred ccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee
Q 027923 47 IQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE 86 (217)
Q Consensus 47 v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~ 86 (217)
.+.|.......+|..+-.+ ...-.+.|.=|.|-+..+.+
T Consensus 32 a~~gs~~~atlrVPhgcdg-kaTtkV~vklPeGvi~~kp~ 70 (178)
T COG4549 32 AAAGSTYKATLRVPHGCDG-KATTKVRVKLPEGVIFAKPQ 70 (178)
T ss_pred ccCCceEEEEEecCCCCCC-CcceEEEEeCCCceeeeccc
Confidence 5678888888888876323 23445566668885544433
No 109
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=24.78 E-value=1.9e+02 Score=19.74 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=5.2
Q ss_pred eEEEEEECC
Q 027923 69 TISVKVTSP 77 (217)
Q Consensus 69 ~i~~~v~~p 77 (217)
.+...-+||
T Consensus 48 ~~~a~WfdP 56 (93)
T PF12904_consen 48 KVKAWWFDP 56 (93)
T ss_dssp EEEEEEEET
T ss_pred ceeEEEEcC
Confidence 455566666
No 110
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.29 E-value=3.7e+02 Score=21.38 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKTKEAEMREV 177 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~ 177 (217)
++.++..+..+.+.+.....+..-+|.|.++.+..
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444433
No 111
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=23.92 E-value=3e+02 Score=20.30 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=23.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhccC
Q 027923 187 WYSLMSLGVCIVVSGVQVWHLKRFFQKKKL 216 (217)
Q Consensus 187 ~~si~~~~vli~~~~~Qv~~lk~fF~~kkl 216 (217)
....++++.-+++.++.++.+-.||++||.
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~ 83 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRR 83 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 445567777778888899999999999874
No 112
>PRK01844 hypothetical protein; Provisional
Probab=23.88 E-value=2.1e+02 Score=18.59 Aligned_cols=26 Identities=4% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhh
Q 027923 188 YSLMSLGVCIVVSGVQVWHLKRFFQK 213 (217)
Q Consensus 188 ~si~~~~vli~~~~~Qv~~lk~fF~~ 213 (217)
|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555666666654
No 113
>PHA02844 putative transmembrane protein; Provisional
Probab=23.58 E-value=1.1e+02 Score=19.97 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=16.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027923 184 RVAWYSLMSLGVCIVVSGVQVWHLKR 209 (217)
Q Consensus 184 rv~~~si~~~~vli~~~~~Qv~~lk~ 209 (217)
+-+++-++-++.++++.++-..|||-
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 44444445566666777777777763
No 114
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=23.48 E-value=2.7e+02 Score=19.55 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=26.7
Q ss_pred EeeeccCCcEEEEEEEEeeCCCC---CCceEEEEEECCCCCeeee
Q 027923 43 VSEEIQNNVVVLADYVVVSDDHS---HSPTISVKVTSPYGNNLHN 84 (217)
Q Consensus 43 f~~~v~~~~~i~~~y~v~~~~~~---~~~~i~~~v~~p~g~~v~~ 84 (217)
|.-.+..|+.+.+..++.+.... .-..+.+.+.+++|+.+.+
T Consensus 77 f~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~ 121 (127)
T cd03453 77 FTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVL 121 (127)
T ss_pred ECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEE
Confidence 34456679999988888653111 1225667777888877654
No 115
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=23.20 E-value=5.2e+02 Score=22.85 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027923 152 KLEGAVEAIHENLLYLK 168 (217)
Q Consensus 152 ~l~~~l~~i~~~q~~~~ 168 (217)
++.+..+.|.+..+|..
T Consensus 319 k~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 319 KLESLREYIDDTEDIIN 335 (414)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 33333344444444443
No 116
>PRK00523 hypothetical protein; Provisional
Probab=22.98 E-value=2.3e+02 Score=18.48 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=13.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 027923 187 WYSLMSLGVCIVVSGVQVWHLKRFFQK 213 (217)
Q Consensus 187 ~~si~~~~vli~~~~~Qv~~lk~fF~~ 213 (217)
.|-++-++.+++-.+.=.|.-|++|++
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555565666653
No 117
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=22.97 E-value=2.3e+02 Score=18.56 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=21.8
Q ss_pred eEEEEecccceeeEEEEeCCCCCCCC-eEEEEEEEe
Q 027923 92 QFAFTTHEAGNYLACFWVDGHNPGGG-DVSVNIDWK 126 (217)
Q Consensus 92 ~~~f~~~~~G~y~iCf~n~~~~~~~~-~~~v~f~~~ 126 (217)
.|.|.+...|..++=|.....+.... ...+.+++.
T Consensus 56 ~f~f~a~~~G~~~i~~~y~r~we~~~~~~~~~~~V~ 91 (92)
T PF09394_consen 56 TFTFKALKPGTTTIKFEYRRPWEKGSPIKTFTITVT 91 (92)
T ss_dssp EEEEEESSSEEEEEEEEEEBTTTBSTTSEEEEEEEE
T ss_pred EEEEEEecCeeEEEEEEEECcCCCCCccEEEEEEEE
Confidence 58888888999998887543322222 245555543
No 118
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=22.80 E-value=64 Score=21.09 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHh
Q 027923 10 EVLFPVFFAFYFTINA 25 (217)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (217)
++.+|.++++|++.+.
T Consensus 33 aVviPl~L~LCiLvl~ 48 (74)
T PF11857_consen 33 AVVIPLVLLLCILVLI 48 (74)
T ss_pred EEeHHHHHHHHHHHHH
Confidence 4678999888776554
No 119
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.68 E-value=1.4e+02 Score=17.12 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 027923 192 SLGVCIVVSGVQVWHLKRFFQKKK 215 (217)
Q Consensus 192 ~~~vli~~~~~Qv~~lk~fF~~kk 215 (217)
-++-+++++++-.+..|++..+|+
T Consensus 15 ~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888887775
No 120
>PHA03163 hypothetical protein; Provisional
Probab=22.62 E-value=2.2e+02 Score=19.30 Aligned_cols=28 Identities=4% Similarity=0.093 Sum_probs=21.0
Q ss_pred HHhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027923 180 KTNSRVAWYSLMSLGVCIVVSGVQVWHL 207 (217)
Q Consensus 180 s~~~rv~~~si~~~~vli~~~~~Qv~~l 207 (217)
+..+--.+|.++...++++.+.+=+.|+
T Consensus 53 sL~SFSSIWaliNv~Ivl~A~~iyL~y~ 80 (92)
T PHA03163 53 QLLSFSSIWAILNVLIMLIACIIYCIYM 80 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677899999999888877655553
No 121
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=22.45 E-value=2e+02 Score=17.66 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=26.3
Q ss_pred EeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCee
Q 027923 43 VSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNL 82 (217)
Q Consensus 43 f~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v 82 (217)
|.-.+..|+.+.+.-++..-+. ....+.+.+++.++..+
T Consensus 40 f~~p~~~gd~l~~~~~v~~~g~-~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 40 FLRPVRPGDTLRVEARVVRVGR-KSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp ESS-BBTTSEEEEEEEEEEEES-SEEEEEEEEEETTSCEE
T ss_pred EccccCCCeEEEEEEEEEEECC-EEEEEEEEEEECCCcEE
Confidence 4446777888888888876432 23477888888777654
No 122
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=22.38 E-value=3.6e+02 Score=20.62 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=9.5
Q ss_pred cceEEEEecccceeeE
Q 027923 90 YGQFAFTTHEAGNYLA 105 (217)
Q Consensus 90 ~~~~~f~~~~~G~y~i 105 (217)
+|.++|+.+..|.|-+
T Consensus 192 ~G~~~~~~~~~G~wli 207 (215)
T PF10670_consen 192 NGRATFTLPRPGLWLI 207 (215)
T ss_pred CCEEEEecCCCEEEEE
Confidence 5666666666666544
No 123
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=22.09 E-value=50 Score=17.14 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=6.7
Q ss_pred HHHHHhhhcc
Q 027923 206 HLKRFFQKKK 215 (217)
Q Consensus 206 ~lk~fF~~kk 215 (217)
.|.||++++|
T Consensus 7 SLqRFLeKRK 16 (27)
T PF09425_consen 7 SLQRFLEKRK 16 (27)
T ss_dssp HHHHHHHHH-
T ss_pred HHHHHHHHHH
Confidence 5778887765
No 124
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.65 E-value=85 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=21.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 027923 186 AWYSLMSLGVCIVVSGVQVWHLKRFFQK 213 (217)
Q Consensus 186 ~~~si~~~~vli~~~~~Qv~~lk~fF~~ 213 (217)
.+|+++..++.++.++++.++=|+|-++
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~~ 34 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAKR 34 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 4788888888888888888777766543
No 125
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=21.50 E-value=2.2e+02 Score=18.41 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=27.4
Q ss_pred eccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEE---EecccceeeEEEEe
Q 027923 46 EIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAF---TTHEAGNYLACFWV 109 (217)
Q Consensus 46 ~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f---~~~~~G~y~iCf~n 109 (217)
.+.+|+.+.+.-.+..+ ....++..+ .+|+.+... ...+.+.+ +....|.|. |...
T Consensus 10 ~V~~G~~vtL~C~~~~~----~~~~~~~w~-k~g~~~~~~--~~~~~l~I~~~~~~dsG~Y~-C~~~ 68 (83)
T cd05753 10 VVFEGEPLVLRCHGWKN----KPVYKVTYY-RDGKAKKYS--HSNSNLSIPQATLSDSGSYH-CSGI 68 (83)
T ss_pred eecCCCCEEEEeeCCCC----CcceEEEEE-ECCeEcccc--CCCceEEECccCHHHCEEEE-EEEE
Confidence 36678888887775322 122334433 234333211 11234444 234679998 7653
No 126
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=21.49 E-value=2.6e+02 Score=18.63 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=19.9
Q ss_pred eEEEEEECCCCCeeeeeecc------ccceEEEEe-----cccceeeEEEE
Q 027923 69 TISVKVTSPYGNNLHNRENV------TYGQFAFTT-----HEAGNYLACFW 108 (217)
Q Consensus 69 ~i~~~v~~p~g~~v~~~~~~------~~~~~~f~~-----~~~G~y~iCf~ 108 (217)
...+.|.|.+++.+++..-. ..+...+.+ +++|.|.|...
T Consensus 35 ~~~f~l~d~~~~~V~~g~~~~~~~~~~s~~~~~~~DFS~~~~~G~Y~i~~~ 85 (91)
T PF02927_consen 35 PSTFELVDASGGKVYTGKLSPAGVDPWSGEYVYRIDFSDLTTPGTYYIRVG 85 (91)
T ss_dssp --EEEEEETTSBEEEEEEEEEEEECTTTTEEEEEEE-TT--S-EEEEEEET
T ss_pred eeEEEEEcCCCCEEEEEEeeCccccCCCCCeEEEEEcCCcCCCEEEEEEEC
Confidence 45677777776666543211 123333322 46788888873
No 127
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=21.40 E-value=2.5e+02 Score=18.48 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=12.3
Q ss_pred ceEEEEEECCCCCeeeeee
Q 027923 68 PTISVKVTSPYGNNLHNRE 86 (217)
Q Consensus 68 ~~i~~~v~~p~g~~v~~~~ 86 (217)
...++.|+|++|+.|+.+.
T Consensus 24 q~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 24 QRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp --EEEEEE-TT--EEEETT
T ss_pred CEEEEEEECCCCCEEEEec
Confidence 4899999999999998765
No 128
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=21.28 E-value=2.1e+02 Score=17.95 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCc-----ceEeeeccCCcEEEEEEEEee
Q 027923 29 DAIWLNLPATGT-----KCVSEEIQNNVVVLADYVVVS 61 (217)
Q Consensus 29 ~~l~~~l~~~~~-----~Cf~~~v~~~~~i~~~y~v~~ 61 (217)
...++.|++|+. +-=++-+..|..+.+.|...+
T Consensus 15 ~~~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 15 ETMTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred CceEEEecCCCEEECCCcccccccCCCCEEEEEEEccC
Confidence 456667776652 222444555677777776554
No 129
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=21.26 E-value=3e+02 Score=19.24 Aligned_cols=43 Identities=7% Similarity=0.065 Sum_probs=19.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRV 185 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv 185 (217)
++.+.+.++.....+..+..+++-.-.+-+..-.+..+++.|+
T Consensus 55 I~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 55 INKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555433333333444445555553
No 130
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=21.21 E-value=4.6e+02 Score=21.35 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=22.7
Q ss_pred HHHHHhhcceeEEE-EEcCCC---cceEeeeccCCcEEEEEEEEee
Q 027923 20 YFTINAIVSDAIWL-NLPATG---TKCVSEEIQNNVVVLADYVVVS 61 (217)
Q Consensus 20 ~~~~~~~~~~~l~~-~l~~~~---~~Cf~~~v~~~~~i~~~y~v~~ 61 (217)
++++++.....+.+ .++... -+|+...-.....+.++....-
T Consensus 6 l~l~l~sC~~~i~~~~~~~~~~lVV~~~i~~~~~~~~V~Ls~s~~~ 51 (298)
T PF14054_consen 6 LLLLLSSCEKEIDIDDLDEEPKLVVEGYITNPGDPQTVRLSRSVPY 51 (298)
T ss_pred HHHHHhccCcccccCcCCCCCeEEEEEEEecCCCcEEEEEEEeecc
Confidence 34444444567777 555542 2455554444567777766543
No 131
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.21 E-value=3.9e+02 Score=23.38 Aligned_cols=68 Identities=10% Similarity=0.297 Sum_probs=34.3
Q ss_pred eeEEEEEcCCCcceEee--eccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecccc---ceEEEEeccccee
Q 027923 29 DAIWLNLPATGTKCVSE--EIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTY---GQFAFTTHEAGNY 103 (217)
Q Consensus 29 ~~l~~~l~~~~~~Cf~~--~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~---~~~~f~~~~~G~y 103 (217)
..+.+++.++ .|--. .++.|. ..|.+...+ .....|.+.++ +.++-..++..- +.+.++. .+|.|
T Consensus 30 ~~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~---~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pGtY 99 (375)
T PRK10378 30 PQVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS---QKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPGEY 99 (375)
T ss_pred CceEEEEECC--ccccCceeeCCCC---EEEEEEeCC---CCcceEEeecc-ccccccccccCCCCceEEEEec-CCceE
Confidence 3556666544 56555 556674 334443322 22456666642 223333333322 3444333 69999
Q ss_pred eE-E
Q 027923 104 LA-C 106 (217)
Q Consensus 104 ~i-C 106 (217)
.+ |
T Consensus 100 ~~~C 103 (375)
T PRK10378 100 DMTC 103 (375)
T ss_pred Eeec
Confidence 98 7
No 132
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=21.20 E-value=3.7e+02 Score=20.26 Aligned_cols=109 Identities=9% Similarity=0.147 Sum_probs=44.8
Q ss_pred EEEEEEEeeCCCC-----CCceEEEEEECCCC-Ceeeee---eccccceEEEEec-----ccceee--EEEEeCCCCCCC
Q 027923 53 VLADYVVVSDDHS-----HSPTISVKVTSPYG-NNLHNR---ENVTYGQFAFTTH-----EAGNYL--ACFWVDGHNPGG 116 (217)
Q Consensus 53 i~~~y~v~~~~~~-----~~~~i~~~v~~p~g-~~v~~~---~~~~~~~~~f~~~-----~~G~y~--iCf~n~~~~~~~ 116 (217)
..+.+.+...+.+ .+....+.+..++| ..+... .+..+|.+.|+.+ ..|.++ +=+.........
T Consensus 35 a~l~~~I~~ng~pldLs~~~v~~~l~l~~~dg~~~~~~~~~i~d~~~G~i~y~lp~~~l~~~G~v~a~~~i~~~~~~~~~ 114 (170)
T PF10651_consen 35 AKLRFNITKNGQPLDLSGANVTFKLVLKMSDGSIFIQDDVEIVDPTNGIIQYTLPDEFLKHVGKVKAQLFIYYNGDGQSI 114 (170)
T ss_dssp EEEEEEEEETTEE---TTSEEEEEEE-TTTTSSSSEEEE-SEEETTTTEEEEE--TTTTHSSEEEEEEEEEEEESSSEEE
T ss_pred EEEEEEEEECCEEEECCCCeEEEEEEEEcCCCcEEEEecceEEcCcCcEEEEEECHHHhccCcEEEEEEEEEECCCCCEE
Confidence 4555556554321 11234444457787 333222 2345888888876 468774 334442111111
Q ss_pred CeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHH
Q 027923 117 GDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHE 162 (217)
Q Consensus 117 ~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~ 162 (217)
....++|.+....-...... .....+..+++-.+.+.+.+.++..
T Consensus 115 ~t~~F~F~V~~s~i~~~~~~-~~~~Yi~~fd~l~~~i~~~~~~~~~ 159 (170)
T PF10651_consen 115 STANFTFEVEDSLIDDIIAE-EAEYYISDFDDLKKIIKEKVDEIKE 159 (170)
T ss_dssp E---EEEEEE--TTTSSE---EETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeEEEEEecccccCcccc-chhcchhhHHHHHHHHHHHHHHHHh
Confidence 22445555543211111100 1223344555445555555555533
No 133
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=20.92 E-value=2.9e+02 Score=18.89 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=30.8
Q ss_pred CcceEeeeccCCcEEEEEEEEeeCCCC---CCceEEEEEECCCCCeeee
Q 027923 39 GTKCVSEEIQNNVVVLADYVVVSDDHS---HSPTISVKVTSPYGNNLHN 84 (217)
Q Consensus 39 ~~~Cf~~~v~~~~~i~~~y~v~~~~~~---~~~~i~~~v~~p~g~~v~~ 84 (217)
..-.|...+..|+.+.+..++.+.... +...+...+.+.+|+++..
T Consensus 73 ~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~ 121 (127)
T cd03441 73 QSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLS 121 (127)
T ss_pred eEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEE
Confidence 345577788889999999998864211 1235666667777776654
No 134
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.85 E-value=77 Score=21.80 Aligned_cols=7 Identities=29% Similarity=0.600 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 027923 12 LFPVFFA 18 (217)
Q Consensus 12 ~~~~~~~ 18 (217)
||-++|+
T Consensus 8 lL~l~LA 14 (95)
T PF07172_consen 8 LLGLLLA 14 (95)
T ss_pred HHHHHHH
Confidence 4444443
No 135
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.73 E-value=4.5e+02 Score=21.04 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=0.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Q 027923 140 KEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLG 194 (217)
Q Consensus 140 ~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~ 194 (217)
+..++.++..+..+.+.+.....+..-+|.|..+.+.........-+.-.++.++
T Consensus 46 ~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVl 100 (214)
T PRK14163 46 TAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVL 100 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
No 136
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=20.46 E-value=78 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=15.9
Q ss_pred cccchhhHHHHHHHHHHHHhh
Q 027923 6 NVHGEVLFPVFFAFYFTINAI 26 (217)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (217)
+++|.+||+.|..++++.++.
T Consensus 36 ~~iG~fLlWyfviilvLm~~~ 56 (243)
T PF15468_consen 36 GAIGSFLLWYFVIILVLMFFS 56 (243)
T ss_pred chhhhHHHHHHHHHHHHHHHH
Confidence 578999999988766665554
No 137
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.37 E-value=1.1e+02 Score=16.17 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=9.4
Q ss_pred HHhHHHHHHHhhHHHHHHHHHH
Q 027923 180 KTNSRVAWYSLMSLGVCIVVSG 201 (217)
Q Consensus 180 s~~~rv~~~si~~~~vli~~~~ 201 (217)
+..++--.|+++|+++.+++..
T Consensus 8 ~~~~~~~GFTLiEllVa~~I~~ 29 (31)
T PF13544_consen 8 RRRRRQRGFTLIELLVAMAILA 29 (31)
T ss_dssp ----------HHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHHHHH
Confidence 3445667899999988876654
No 138
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.16 E-value=4.5e+02 Score=20.88 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Q 027923 143 LEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLG 194 (217)
Q Consensus 143 ~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~~si~~~~ 194 (217)
.+.++..+..+...+.++++...+.+.-.++.|.-.+.-......+++-.++
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~ 66 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFA 66 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777776666666666666666666566555554443
Done!