BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027924
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NHR7|CO043_HUMAN Uncharacterized protein C15orf43 OS=Homo sapiens GN=C15orf43 PE=2
           SV=1
          Length = 220

 Score = 33.1 bits (74), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 77  QTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI------GLGSFLLKRPR 130
           Q+LDY++D  + + AY  +AV   K    VA  H FI     +       +GSF+ ++ +
Sbjct: 52  QSLDYIEDNATVFHAYYLSAVANAKIKNSVALGH-FILPPACLQKEIRRKIGSFIWEQDQ 110

Query: 131 HFL 133
           HFL
Sbjct: 111 HFL 113


>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
          Length = 1801

 Score = 32.7 bits (73), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 139  RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQ 198
            R+  +E+SL S A  + +QL   ++ LK +       A  AE+     +++ R+A KQ++
Sbjct: 1648 RMAGTEQSLNS-ASERARQLHALLEALKLKRAGNSLAASTAEETAGSAQSRAREAEKQLR 1706

Query: 199  GVINSAYKI-----ERQAAGML 215
              +   Y+      ER+A G+L
Sbjct: 1707 EQVGDQYQTVRALAERKAEGVL 1728


>sp|Q21UD1|SECA_RHOFD Protein translocase subunit SecA OS=Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118) GN=secA PE=3
           SV=1
          Length = 921

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT---KLRQA-GKQIQGVINSA 204
           SR D ++KQ R+S+ R+ A   +LEK++    DE +RG+T   K R A G+ +  ++  A
Sbjct: 12  SRNDRQLKQYRKSVVRINAMEAELEKLS----DEALRGKTQEFKDRIAKGESLDALLPEA 67

Query: 205 YKIERQAA 212
           + + R+ +
Sbjct: 68  FAVVREGS 75


>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
          Length = 1799

 Score = 31.2 bits (69), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 139  RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQ 198
            R+  +E+SL S A  + +QL   ++ LK +       A  AE+     +++ R+A KQ++
Sbjct: 1646 RMAGAEKSLNS-AGERARQLDALLEALKLKRAGNSLAASTAEETAGSAQSRAREAEKQLR 1704

Query: 199  GVINSAYKI-----ERQAAGML 215
              +   Y+      ER+A G+L
Sbjct: 1705 EQVGDQYQTVRALAERKAEGVL 1726


>sp|Q2M2T9|CO043_BOVIN Uncharacterized protein C15orf43 homolog OS=Bos taurus PE=2 SV=1
          Length = 221

 Score = 30.8 bits (68), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 77  QTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI------GLGSFLLKRPR 130
           Q+LDY++D  + + AY  +AV   +    VA  H FI    ++       +GSF+ ++ +
Sbjct: 52  QSLDYIEDNATVFHAYYLSAVANAEIKNSVALGH-FILPPASLQKEIRRKIGSFIWEQDQ 110

Query: 131 HFL 133
           HFL
Sbjct: 111 HFL 113


>sp|Q2NFJ8|DPHB_METST Diphthine synthase OS=Methanosphaera stadtmanae (strain DSM 3091)
           GN=dphB PE=3 SV=1
          Length = 263

 Score = 30.4 bits (67), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 76  QQTLDYLQDVKSEYA--AYEDAAVGKVKEGIHVAAS-HPFITAGGAIGLGSFLLKRPRHF 132
            Q LDYL  V+SE     ++D    ++  GI  A S HP +  G    + +F   +P H 
Sbjct: 177 NQALDYLSKVESERKEHVFDD---DRIVIGIAQAGSKHPIVKGGRVSDVKNFDFGKPLHC 233

Query: 133 LYYNTLRLFASEESLLSRADTKVKQLRQ 160
           +       F   E+L++ AD   + L+ 
Sbjct: 234 IIVPANLHFIEAEALITLADVDKELLKD 261


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.128    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,153,667
Number of Sequences: 539616
Number of extensions: 2390434
Number of successful extensions: 11154
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 11045
Number of HSP's gapped (non-prelim): 146
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)