Query 027924
Match_columns 217
No_of_seqs 32 out of 34
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05957 DUF883: Bacterial pro 97.8 0.00047 1E-08 51.9 11.0 83 40-125 5-87 (94)
2 PRK10404 hypothetical protein; 96.8 0.026 5.6E-07 44.4 10.8 81 41-125 13-94 (101)
3 PRK10132 hypothetical protein; 95.7 0.23 4.9E-06 39.7 10.9 63 55-125 34-100 (108)
4 COG4575 ElaB Uncharacterized c 94.7 0.46 9.9E-06 38.4 9.7 83 36-125 11-97 (104)
5 PF04156 IncA: IncA protein; 90.5 6.9 0.00015 32.2 11.5 63 111-173 38-115 (191)
6 PF09769 ApoO: Apolipoprotein 87.4 1.4 3.1E-05 36.0 5.3 73 63-139 46-127 (158)
7 PRK10132 hypothetical protein; 86.9 7.5 0.00016 31.1 9.0 77 45-128 28-107 (108)
8 PRK11637 AmiB activator; Provi 85.3 21 0.00046 33.4 12.4 61 147-207 76-136 (428)
9 PF06008 Laminin_I: Laminin Do 83.6 20 0.00044 31.4 11.0 90 124-213 14-112 (264)
10 PRK04654 sec-independent trans 83.1 15 0.00032 33.1 10.0 79 123-205 16-99 (214)
11 PRK08475 F0F1 ATP synthase sub 81.3 30 0.00066 28.8 13.6 76 96-171 3-81 (167)
12 PRK11637 AmiB activator; Provi 79.6 19 0.00041 33.7 9.9 10 110-119 21-30 (428)
13 PF10805 DUF2730: Protein of u 75.7 36 0.00079 26.6 9.2 86 110-198 9-96 (106)
14 PF00261 Tropomyosin: Tropomyo 71.9 51 0.0011 28.7 9.9 58 147-204 107-164 (237)
15 COG4942 Membrane-bound metallo 71.0 52 0.0011 32.3 10.6 70 140-210 33-102 (420)
16 PRK09039 hypothetical protein; 70.8 91 0.002 29.0 19.4 141 43-202 41-186 (343)
17 PRK00888 ftsB cell division pr 69.3 29 0.00062 27.3 7.1 26 148-173 36-61 (105)
18 COG1579 Zn-ribbon protein, pos 64.4 69 0.0015 29.1 9.4 75 134-211 29-105 (239)
19 PRK14471 F0F1 ATP synthase sub 63.6 80 0.0017 25.7 11.7 52 120-171 16-67 (164)
20 PF05700 BCAS2: Breast carcino 62.5 1E+02 0.0023 26.7 10.5 69 143-211 140-212 (221)
21 PRK13460 F0F1 ATP synthase sub 61.8 91 0.002 25.8 10.6 55 117-171 21-75 (173)
22 PF11559 ADIP: Afadin- and alp 61.1 85 0.0018 25.2 10.2 48 155-202 75-122 (151)
23 PF12718 Tropomyosin_1: Tropom 59.6 99 0.0021 25.5 9.6 43 171-213 77-119 (143)
24 PF04156 IncA: IncA protein; 59.2 99 0.0022 25.4 11.7 27 181-207 116-142 (191)
25 CHL00118 atpG ATP synthase CF0 58.3 1E+02 0.0022 25.1 11.8 58 114-171 24-81 (156)
26 TIGR02680 conserved hypothetic 58.2 2.9E+02 0.0063 30.4 17.4 35 73-107 240-274 (1353)
27 PF10337 DUF2422: Protein of u 57.1 1.8E+02 0.0038 27.6 11.2 97 112-208 199-313 (459)
28 PF06103 DUF948: Bacterial pro 56.8 77 0.0017 23.3 11.0 62 145-206 25-86 (90)
29 PRK13454 F0F1 ATP synthase sub 54.7 1.3E+02 0.0028 25.3 10.4 50 122-171 41-90 (181)
30 PF12777 MT: Microtubule-bindi 54.1 1.2E+02 0.0025 27.9 9.3 90 110-199 185-288 (344)
31 PF08898 DUF1843: Domain of un 53.5 23 0.00051 25.7 3.7 31 145-175 20-53 (53)
32 COG2433 Uncharacterized conser 52.3 3E+02 0.0065 28.8 12.9 26 69-97 337-362 (652)
33 PRK07353 F0F1 ATP synthase sub 52.0 1.1E+02 0.0025 23.9 11.1 56 116-171 9-64 (140)
34 PF12072 DUF3552: Domain of un 51.8 1.5E+02 0.0033 25.3 13.0 46 113-162 8-54 (201)
35 PRK05759 F0F1 ATP synthase sub 51.8 1.2E+02 0.0026 24.1 11.2 53 118-170 10-62 (156)
36 TIGR03185 DNA_S_dndD DNA sulfu 50.4 2.2E+02 0.0047 28.4 11.0 109 81-196 138-259 (650)
37 cd01056 Euk_Ferritin eukaryoti 50.0 1.4E+02 0.003 24.2 8.9 62 35-107 84-146 (161)
38 PF14235 DUF4337: Domain of un 49.8 50 0.0011 27.8 5.7 59 148-206 68-131 (157)
39 PF11382 DUF3186: Protein of u 49.8 68 0.0015 29.3 7.0 52 113-177 12-63 (308)
40 PRK08476 F0F1 ATP synthase sub 49.6 1.4E+02 0.003 24.2 11.5 54 120-173 15-68 (141)
41 PRK15022 ferritin-like protein 48.5 1.4E+02 0.0031 25.4 8.3 66 35-111 83-148 (167)
42 PRK14472 F0F1 ATP synthase sub 48.3 1.6E+02 0.0034 24.4 11.8 50 122-171 28-77 (175)
43 PRK11677 hypothetical protein; 48.0 67 0.0014 26.8 6.1 60 113-177 8-67 (134)
44 PF12758 DUF3813: Protein of u 46.6 37 0.0008 25.4 3.9 48 37-85 11-62 (63)
45 KOG4431 Uncharacterized protei 46.4 16 0.00034 29.5 2.1 26 98-126 20-45 (100)
46 PRK13453 F0F1 ATP synthase sub 46.1 1.7E+02 0.0038 24.2 11.3 59 113-171 19-77 (173)
47 PF11657 Activator-TraM: Trans 45.8 1.9E+02 0.004 24.5 9.3 27 98-124 113-139 (144)
48 PRK00888 ftsB cell division pr 45.4 89 0.0019 24.5 6.2 61 115-175 9-70 (105)
49 PF15456 Uds1: Up-regulated Du 45.3 88 0.0019 25.6 6.3 40 160-200 22-61 (124)
50 PF04100 Vps53_N: Vps53-like, 44.9 1.2E+02 0.0026 28.7 8.0 70 139-212 12-81 (383)
51 PF06109 HlyE: Haemolysin E (H 44.6 1.9E+02 0.004 26.8 8.8 72 47-120 11-89 (299)
52 PRK14475 F0F1 ATP synthase sub 44.0 1.8E+02 0.0039 23.9 11.3 60 130-189 28-99 (167)
53 PRK14160 heat shock protein Gr 43.9 2.3E+02 0.005 25.3 9.2 37 143-179 51-87 (211)
54 PRK15422 septal ring assembly 43.8 1.6E+02 0.0034 23.1 8.1 54 147-200 5-61 (79)
55 PRK10884 SH3 domain-containing 43.7 2.2E+02 0.0049 25.0 9.0 105 27-131 72-198 (206)
56 PRK10404 hypothetical protein; 42.3 1.7E+02 0.0037 23.1 10.1 65 57-128 36-101 (101)
57 KOG1962 B-cell receptor-associ 41.3 2.3E+02 0.005 25.6 8.8 29 162-190 153-181 (216)
58 PRK09174 F0F1 ATP synthase sub 41.3 2.4E+02 0.0052 24.5 10.5 42 130-171 71-112 (204)
59 PRK14161 heat shock protein Gr 40.9 2.4E+02 0.0051 24.3 9.0 42 142-183 8-49 (178)
60 cd00632 Prefoldin_beta Prefold 40.6 1.6E+02 0.0035 22.4 11.2 35 73-107 6-42 (105)
61 PRK14474 F0F1 ATP synthase sub 39.8 2.7E+02 0.0059 24.8 12.5 83 115-197 8-102 (250)
62 KOG2412 Nuclear-export-signal 39.4 1.2E+02 0.0026 31.1 7.4 73 58-130 340-422 (591)
63 PF04977 DivIC: Septum formati 39.0 81 0.0018 22.0 4.6 33 140-172 18-50 (80)
64 PF02185 HR1: Hr1 repeat; Int 38.8 1.2E+02 0.0026 21.6 5.5 36 140-175 26-62 (70)
65 KOG2629 Peroxisomal membrane a 38.5 3.6E+02 0.0077 25.7 11.1 73 121-193 96-169 (300)
66 COG3883 Uncharacterized protei 38.4 3.3E+02 0.0072 25.3 10.9 76 128-203 19-95 (265)
67 PF00430 ATP-synt_B: ATP synth 37.1 1.8E+02 0.004 22.0 9.2 42 130-171 17-58 (132)
68 COG1579 Zn-ribbon protein, pos 37.1 2.2E+02 0.0048 25.9 8.1 34 150-183 49-82 (239)
69 PRK00708 sec-independent trans 36.8 3.1E+02 0.0068 24.6 10.4 22 121-142 14-36 (209)
70 PRK11677 hypothetical protein; 35.9 1E+02 0.0023 25.6 5.5 42 51-92 32-73 (134)
71 PF06295 DUF1043: Protein of u 35.7 1.3E+02 0.0029 24.1 6.0 44 51-94 28-71 (128)
72 PRK02195 V-type ATP synthase s 35.7 2.2E+02 0.0047 24.7 7.6 60 25-100 108-167 (201)
73 KOG3501 Molecular chaperone Pr 35.3 2.6E+02 0.0055 23.2 7.5 42 142-183 63-104 (114)
74 PF15136 UPF0449: Uncharacteri 34.0 78 0.0017 25.4 4.3 32 172-203 65-96 (97)
75 PF04799 Fzo_mitofusin: fzo-li 33.9 3.2E+02 0.007 23.9 8.5 48 149-204 116-163 (171)
76 PF05957 DUF883: Bacterial pro 33.7 2E+02 0.0044 21.4 11.1 78 45-128 17-94 (94)
77 PRK12779 putative bifunctional 33.6 1.9E+02 0.0041 30.7 8.1 90 51-140 16-113 (944)
78 PF13815 Dzip-like_N: Iguana/D 33.5 2.4E+02 0.0052 22.2 8.4 54 147-200 60-113 (118)
79 PF07246 Phlebovirus_NSM: Phle 33.4 1.8E+02 0.0039 27.1 7.1 55 135-193 188-242 (264)
80 cd00089 HR1 Protein kinase C-r 33.4 86 0.0019 22.5 4.1 28 147-174 43-70 (72)
81 PF05384 DegS: Sensor protein 33.1 3.1E+02 0.0067 23.4 9.4 64 143-206 14-84 (159)
82 TIGR00984 3a0801s03tim44 mitoc 32.9 2.1E+02 0.0046 27.7 7.7 54 153-206 8-74 (378)
83 CHL00019 atpF ATP synthase CF0 32.4 3E+02 0.0064 23.0 11.5 52 120-171 32-83 (184)
84 PRK06285 chorismate mutase; Pr 32.2 1.2E+02 0.0025 23.1 4.9 32 150-181 4-36 (96)
85 PRK06568 F0F1 ATP synthase sub 32.0 3.1E+02 0.0068 23.1 12.8 45 129-173 21-65 (154)
86 COG2882 FliJ Flagellar biosynt 31.7 2E+02 0.0044 24.4 6.6 52 54-109 15-66 (148)
87 PF06717 DUF1202: Protein of u 31.4 1E+02 0.0023 29.2 5.3 45 145-189 137-181 (308)
88 TIGR01144 ATP_synt_b ATP synth 31.4 2.6E+02 0.0057 22.0 11.4 43 129-171 12-54 (147)
89 PRK14148 heat shock protein Gr 31.1 3E+02 0.0064 24.2 7.7 19 155-173 42-60 (195)
90 PF13997 YqjK: YqjK-like prote 30.9 51 0.0011 24.5 2.6 29 102-133 31-59 (73)
91 PF08285 DPM3: Dolichol-phosph 30.6 44 0.00094 26.0 2.3 25 147-171 62-86 (91)
92 smart00435 TOPEUc DNA Topoisom 30.2 3.3E+02 0.0072 26.6 8.6 23 191-213 339-361 (391)
93 KOG4154 Arginine-rich protein 30.0 51 0.0011 28.6 2.8 31 112-142 7-43 (178)
94 TIGR00998 8a0101 efflux pump m 30.0 3.8E+02 0.0082 23.5 8.8 15 187-201 152-166 (334)
95 PF11727 ISG65-75: Invariant s 29.6 4.2E+02 0.0091 23.9 9.1 80 132-211 59-140 (286)
96 PF12732 YtxH: YtxH-like prote 29.0 2.2E+02 0.0048 20.4 9.2 23 149-171 29-51 (74)
97 PF10779 XhlA: Haemolysin XhlA 28.5 2.3E+02 0.005 20.5 7.7 33 150-182 3-35 (71)
98 PF11157 DUF2937: Protein of u 28.5 2.3E+02 0.005 24.0 6.5 99 45-150 28-139 (167)
99 KOG1655 Protein involved in va 28.3 2.2E+02 0.0047 26.0 6.5 55 148-207 99-155 (218)
100 PRK09343 prefoldin subunit bet 28.2 3E+02 0.0064 22.0 6.7 26 181-206 92-117 (121)
101 PF04588 HIG_1_N: Hypoxia indu 27.7 41 0.00088 23.4 1.5 19 107-125 1-19 (54)
102 COG1394 NtpD Archaeal/vacuolar 27.5 3.1E+02 0.0066 24.6 7.3 61 29-105 120-180 (211)
103 PF12777 MT: Microtubule-bindi 26.5 3.8E+02 0.0082 24.7 8.0 65 136-200 232-296 (344)
104 PRK14473 F0F1 ATP synthase sub 26.3 3.5E+02 0.0077 21.9 12.5 51 121-171 17-67 (164)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.2 3.4E+02 0.0073 21.6 10.2 53 148-200 12-64 (132)
106 PF13805 Pil1: Eisosome compon 25.9 5.1E+02 0.011 24.2 8.6 64 133-203 125-194 (271)
107 PLN02829 Probable galacturonos 25.6 2.2E+02 0.0047 29.7 6.7 92 93-185 181-279 (639)
108 TIGR03321 alt_F1F0_F0_B altern 25.3 4.6E+02 0.01 22.9 11.1 53 119-171 12-64 (246)
109 PF04632 FUSC: Fusaric acid re 25.0 2.7E+02 0.0059 26.8 7.0 96 113-208 137-236 (650)
110 TIGR00309 V_ATPase_subD H(+)-t 24.8 4.5E+02 0.0098 22.6 8.0 64 26-105 119-182 (209)
111 PF13600 DUF4140: N-terminal d 24.6 2.1E+02 0.0045 21.4 5.0 32 152-183 69-100 (104)
112 PLN03098 LPA1 LOW PSII ACCUMUL 24.6 5.2E+02 0.011 25.8 8.9 26 31-56 73-98 (453)
113 PF02388 FemAB: FemAB family; 24.6 4.3E+02 0.0094 24.9 8.1 54 152-209 241-294 (406)
114 KOG3564 GTPase-activating prot 24.3 4.8E+02 0.01 26.9 8.7 67 136-204 20-86 (604)
115 PF12709 Kinetocho_Slk19: Cent 24.2 3E+02 0.0064 21.7 5.9 32 151-182 47-78 (87)
116 PF06305 DUF1049: Protein of u 24.2 87 0.0019 21.6 2.7 11 115-125 28-38 (68)
117 PF05667 DUF812: Protein of un 24.0 7.3E+02 0.016 25.3 10.0 32 142-173 317-348 (594)
118 PF10112 Halogen_Hydrol: 5-bro 23.8 3.8E+02 0.0081 22.5 6.9 33 134-166 59-95 (199)
119 PF14817 HAUS5: HAUS augmin-li 23.6 3.1E+02 0.0068 28.2 7.5 44 150-193 83-126 (632)
120 PRK10304 ferritin; Provisional 23.5 4.4E+02 0.0095 22.0 8.6 37 35-75 83-119 (165)
121 COG4345 Uncharacterized protei 23.4 3.4E+02 0.0074 24.1 6.7 54 137-204 113-169 (181)
122 cd00584 Prefoldin_alpha Prefol 23.3 2.7E+02 0.0059 21.5 5.6 37 148-184 89-125 (129)
123 PRK11530 hypothetical protein; 23.3 1.5E+02 0.0033 26.3 4.6 35 147-181 16-52 (183)
124 PF06698 DUF1192: Protein of u 23.3 1.3E+02 0.0029 22.0 3.6 21 154-174 22-42 (59)
125 PRK07857 hypothetical protein; 23.2 1.7E+02 0.0037 23.6 4.5 30 152-181 27-57 (106)
126 PF10211 Ax_dynein_light: Axon 23.2 4.8E+02 0.01 22.3 8.5 52 151-202 125-187 (189)
127 cd00890 Prefoldin Prefoldin is 23.0 3.4E+02 0.0073 20.5 6.7 40 144-183 85-124 (129)
128 PRK07352 F0F1 ATP synthase sub 22.4 4.4E+02 0.0096 21.7 11.6 45 125-169 32-76 (174)
129 smart00742 Hr1 Rho effector or 22.3 2.3E+02 0.005 19.6 4.5 33 138-170 24-56 (57)
130 TIGR02894 DNA_bind_RsfA transc 22.2 2.7E+02 0.0059 24.2 5.8 35 150-184 108-142 (161)
131 PRK15178 Vi polysaccharide exp 22.2 4.2E+02 0.0092 26.1 7.8 67 145-211 222-295 (434)
132 PRK09239 chorismate mutase; Pr 21.9 2.5E+02 0.0054 22.1 5.1 32 151-182 8-40 (104)
133 PF01920 Prefoldin_2: Prefoldi 21.9 3.2E+02 0.007 19.9 9.0 40 143-182 59-98 (106)
134 PF07989 Microtub_assoc: Micro 21.7 3.5E+02 0.0076 20.2 5.7 34 150-183 40-73 (75)
135 COG4191 Signal transduction hi 21.1 6.3E+02 0.014 26.2 9.0 21 174-195 360-380 (603)
136 PF04977 DivIC: Septum formati 21.1 2.7E+02 0.0058 19.3 4.7 24 150-173 21-44 (80)
137 PF10146 zf-C4H2: Zinc finger- 21.0 6.1E+02 0.013 22.7 10.2 47 133-179 12-58 (230)
138 PF02996 Prefoldin: Prefoldin 20.9 3.7E+02 0.0081 20.2 6.3 42 143-184 74-115 (120)
139 PF08785 Ku_PK_bind: Ku C term 20.6 2.5E+02 0.0055 22.1 5.0 52 53-104 20-77 (120)
140 PRK13729 conjugal transfer pil 20.4 3.1E+02 0.0067 27.5 6.5 29 145-173 68-96 (475)
141 PF08717 nsp8: nsp8 replicase; 20.4 3.1E+02 0.0067 24.7 5.9 17 153-169 33-49 (199)
142 TIGR00999 8a0102 Membrane Fusi 20.3 5.1E+02 0.011 21.6 7.0 54 150-203 20-76 (265)
143 PF08657 DASH_Spc34: DASH comp 20.2 2.6E+02 0.0057 25.4 5.6 61 150-210 177-254 (259)
144 PF09006 Surfac_D-trimer: Lung 20.2 2.1E+02 0.0046 20.3 3.9 23 155-177 1-23 (46)
No 1
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=97.81 E-value=0.00047 Score=51.86 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 027924 40 QQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119 (217)
Q Consensus 40 ~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~ 119 (217)
++..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--..... ..-..+++||+-+.|+|+
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~V~e~P~~svgiAa 81 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAE---QTEDYVRENPWQSVGIAA 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHChHHHHHHHH
Confidence 34445666777777777777788888888888888888777777666554333322222 234567899999999999
Q ss_pred HHHHhh
Q 027924 120 GLGSFL 125 (217)
Q Consensus 120 ~aglll 125 (217)
++|||+
T Consensus 82 gvG~ll 87 (94)
T PF05957_consen 82 GVGFLL 87 (94)
T ss_pred HHHHHH
Confidence 999986
No 2
>PRK10404 hypothetical protein; Provisional
Probab=96.80 E-value=0.026 Score=44.43 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 027924 41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA-YEDAAVGKVKEGIHVAASHPFITAGGAI 119 (217)
Q Consensus 41 qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~-yEd~~f~kiKegv~~A~shP~~a~g~a~ 119 (217)
.-..+-.++.+-..++-+.+.....++|+....++..+++.|.+....+.. +.+ .....-.++++||+-++|+++
T Consensus 13 dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~----aa~~td~yV~e~Pw~avGiaa 88 (101)
T PRK10404 13 DLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQ----AVYRADDYVHEKPWQGIGVGA 88 (101)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhCcHHHHHHHH
Confidence 334455555555555666677777779988888888888777766654322 211 122234667889999999999
Q ss_pred HHHHhh
Q 027924 120 GLGSFL 125 (217)
Q Consensus 120 ~aglll 125 (217)
++|||+
T Consensus 89 gvGlll 94 (101)
T PRK10404 89 AVGLVL 94 (101)
T ss_pred HHHHHH
Confidence 999875
No 3
>PRK10132 hypothetical protein; Provisional
Probab=95.73 E-value=0.23 Score=39.70 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHhhhChhhHHHHHHHHHHhh
Q 027924 55 SAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGGAIGLGSFL 125 (217)
Q Consensus 55 ~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKeg----v~~A~shP~~a~g~a~~aglll 125 (217)
++-+.+.....++|+.-...+.++.+.|.+...- ..+.|+. -..+++||.-++|+++++|||+
T Consensus 34 ~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 34 SWGSDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3333444444556666666666666665543331 1222333 3456789999999999888875
No 4
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.46 Score=38.39 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HhhhCh
Q 027924 36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP 111 (217)
Q Consensus 36 ~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~----~A~shP 111 (217)
+..+.--+.|--++++-.++.=..|.-...+||..--+-+..+++-+.+.. |.+....|+.+. ++.+||
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence 444444444445555555555555666667788776666666666666555 555556666654 568899
Q ss_pred hhHHHHHHHHHHhh
Q 027924 112 FITAGGAIGLGSFL 125 (217)
Q Consensus 112 ~~a~g~a~~aglll 125 (217)
.=++|+++++|||+
T Consensus 84 Wq~VGvaAaVGlll 97 (104)
T COG4575 84 WQGVGVAAAVGLLL 97 (104)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999999875
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.53 E-value=6.9 Score=32.17 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHhhccCchhHHHHHhh---------------hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 111 PFITAGGAIGLGSFLLKRPRHFLYYNTL---------------RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 111 P~~a~g~a~~aglllLr~PRRfLyr~Tl---------------grF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
+.+.+++.++.|++++-.-=.++..... +.....+..++..+++..++...+..+.++..++.
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666554444433322 23333344444444444444444444444444443
No 6
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=87.41 E-value=1.4 Score=36.01 Aligned_cols=73 Identities=25% Similarity=0.272 Sum_probs=52.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh------hhHHHHHHHHHHhhccC---chhHH
Q 027924 63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP------FITAGGAIGLGSFLLKR---PRHFL 133 (217)
Q Consensus 63 ~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP------~~a~g~a~~aglllLr~---PRRfL 133 (217)
.++++|..-..++..+++.++.+++.|...|+.+=+.++. .+..| .+.+|+++.+|++|-|+ ++||+
T Consensus 46 ~i~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~ 121 (158)
T PF09769_consen 46 QIRKAREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFL 121 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhH
Confidence 3445777778889999999999999999999876666643 33333 34567778888888873 55666
Q ss_pred HHHhhh
Q 027924 134 YYNTLR 139 (217)
Q Consensus 134 yr~Tlg 139 (217)
|=-.+|
T Consensus 122 ~P~~~g 127 (158)
T PF09769_consen 122 YPLAFG 127 (158)
T ss_pred HHHHHH
Confidence 655554
No 7
>PRK10132 hypothetical protein; Provisional
Probab=86.95 E-value=7.5 Score=31.08 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=55.3
Q ss_pred HHHHHHHhHHHH---HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHH
Q 027924 45 YRKIVEESIDSA---IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGL 121 (217)
Q Consensus 45 ~qk~~~es~d~a---i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~a 121 (217)
+...+.++.+.+ ++.+|.+.......+...+..+.+..+..+.-....++.+=.++=.+| +|++|+++.+
T Consensus 28 le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~ll 100 (108)
T PRK10132 28 LESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFI 100 (108)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHH
Confidence 333344444333 588888888888888888888777666667767777777767774444 4789999999
Q ss_pred HHhhccC
Q 027924 122 GSFLLKR 128 (217)
Q Consensus 122 glllLr~ 128 (217)
|+|+-||
T Consensus 101 G~Ll~RR 107 (108)
T PRK10132 101 GALLSLR 107 (108)
T ss_pred HHHHhcc
Confidence 9998764
No 8
>PRK11637 AmiB activator; Provisional
Probab=85.28 E-value=21 Score=33.38 Aligned_cols=61 Identities=8% Similarity=0.175 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~ 207 (217)
-++..++++..+...++.+..++..+.+.....++++..=..+|...-.++...++.+|+-
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455555555556666666666666666666667777777777777777777777763
No 9
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.61 E-value=20 Score=31.37 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=61.4
Q ss_pred hhccCchhHHH---------HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 027924 124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG 194 (217)
Q Consensus 124 llLr~PRRfLy---------r~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG 194 (217)
..+|+|.+++| +.-.+.+..-...+...+.++..|.+.++.+.....+....+.....+..+-+..-..-.
T Consensus 14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999998 223333444455688888888888888888888888876666666666555555555666
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 027924 195 KQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 195 ~qIq~l~~s~yK~E~~Aag 213 (217)
..|+.+...|-.+-.++.+
T Consensus 94 ~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777766666655544
No 10
>PRK04654 sec-independent translocase; Provisional
Probab=83.13 E-value=15 Score=33.13 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=46.4
Q ss_pred HhhccCchhHH-HHHh----hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027924 123 SFLLKRPRHFL-YYNT----LRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (217)
Q Consensus 123 lllLr~PRRfL-yr~T----lgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qI 197 (217)
.|++-||-|+= +=++ +|+|++ .++.....+++= ..++.++++.+++.+....++.+++.+...|+++++.+
T Consensus 16 ALlV~GPerLPe~aRtlGk~irk~R~---~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~ 91 (214)
T PRK04654 16 ALVVLGPERLPKAARFAGLWVRRARM---QWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARAL 91 (214)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555777763 3334 444442 455554444322 12355666677766666777778888888888888777
Q ss_pred HHHHHHHH
Q 027924 198 QGVINSAY 205 (217)
Q Consensus 198 q~l~~s~y 205 (217)
++..+.-+
T Consensus 92 ~~~~~~~~ 99 (214)
T PRK04654 92 HDDVSRDI 99 (214)
T ss_pred hhhhhccc
Confidence 75544433
No 11
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=81.26 E-value=30 Score=28.76 Aligned_cols=76 Identities=11% Similarity=-0.118 Sum_probs=44.9
Q ss_pred HHhhhhhhHHHhhhChhhH---HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 96 AVGKVKEGIHVAASHPFIT---AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 96 ~f~kiKegv~~A~shP~~a---~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
||--+--++-+|.+|+++- .-..+...++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.++
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (167)
T PRK08475 3 FFLLLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALK 81 (167)
T ss_pred HHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777777744 222233444444445569999888888776666665555555555555555555544
No 12
>PRK11637 AmiB activator; Provisional
Probab=79.55 E-value=19 Score=33.69 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=6.4
Q ss_pred ChhhHHHHHH
Q 027924 110 HPFITAGGAI 119 (217)
Q Consensus 110 hP~~a~g~a~ 119 (217)
.|.+++.+.+
T Consensus 21 ~~~~~~~ll~ 30 (428)
T PRK11637 21 RPILYASVLS 30 (428)
T ss_pred hhHHHHHHHH
Confidence 5777775544
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.72 E-value=36 Score=26.60 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhH
Q 027924 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRL--KAESEKLEKVALVAEDELIRGR 187 (217)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdll--k~Es~KL~era~~AE~E~~RGr 187 (217)
=|.|.++++++.+++.+.=.|+|- +-.++..=++-+..-+.++..+.+.++.+ +.+..+|+-+..--+.++..=.
T Consensus 9 w~ii~a~~~~~~~~~~~~l~~~~a---~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLWLRRTYA---KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 356666666666665554444432 22223223333344455566666666666 5666665555444443443333
Q ss_pred HHHHHHHHHHH
Q 027924 188 TKLRQAGKQIQ 198 (217)
Q Consensus 188 tkLr~aG~qIq 198 (217)
..|+.-.++..
T Consensus 86 ~~l~~v~~~~~ 96 (106)
T PF10805_consen 86 ARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHH
Confidence 33433333333
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.86 E-value=51 Score=28.67 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~ 204 (217)
.+..++.++.+....+..+..++.+.++|+..+|.....=...|+..|..|+++--+.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555555555555556666666666666666665555555555555555554433
No 15
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.96 E-value=52 Score=32.26 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=55.1
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 027924 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (217)
Q Consensus 140 rF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~ 210 (217)
.+.++ ..++..+++.+.+..++...+.+.+||++-..-.|.++.+=...|++++..+..+-+.|-.++..
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 34444 67889999999999999999999999998888888888777777777777777666666555543
No 16
>PRK09039 hypothetical protein; Validated
Probab=70.85 E-value=91 Score=29.03 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=95.5
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhChhhHHHH
Q 027924 43 MIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH--VAASHPFITAGG 117 (217)
Q Consensus 43 ~~~qk~~~es~d~ai~aa~s~~s~~~---~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~--~A~shP~~a~g~ 117 (217)
|++=.---+..|..++...++++++- +---..-..+++.+..+..+|...|..== .++.-.. ....+|.-
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~---- 115 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAE---- 115 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHH----
Confidence 33333334566777777776665543 33445566777888888888886554211 1111000 00011211
Q ss_pred HHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027924 118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (217)
Q Consensus 118 a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qI 197 (217)
..++-+ -..+..+++..+.+...|.-|++-|+.+++.+..|+.....+|.+-.-=+.++..-+..|
T Consensus 116 -~~~~~l-------------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 116 -GRAGEL-------------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred -HHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 277889999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHH
Q 027924 198 QGVIN 202 (217)
Q Consensus 198 q~l~~ 202 (217)
+..+.
T Consensus 182 ~~a~~ 186 (343)
T PRK09039 182 NVALA 186 (343)
T ss_pred HHHHH
Confidence 88873
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.27 E-value=29 Score=27.30 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
+...+++..+|++.-+.|+.|.+.|.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.36 E-value=69 Score=29.07 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 027924 134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--GKQIQGVINSAYKIERQA 211 (217)
Q Consensus 134 yr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a--G~qIq~l~~s~yK~E~~A 211 (217)
++..+...++ .+.++-+.+..+...++.++++...++....-.++.+.+++.+|.+. -+++..|-.-++....+.
T Consensus 29 ~~~~l~k~~~---e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAKA---ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4444554444 35555556666666666666666666655555666666666665221 234444444444444443
No 19
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=63.60 E-value=80 Score=25.69 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
+..++++--=.+|||.-..+-+..=+..+...-...++.+..++.+..|.++
T Consensus 16 i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 67 (164)
T PRK14471 16 ILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNER 67 (164)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444457899999999998887777777777777777777776666665
No 20
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=62.48 E-value=1e+02 Score=26.70 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027924 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKV----ALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (217)
Q Consensus 143 SEEaLl~~ae~~V~eLr~svdllk~Es~KL~er----a~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~A 211 (217)
.=|+++...++....++..|+.+..+.+.-+.. ...-|.+...|-++--+.+..+..|-..|....+++
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999998886644 234455566666666666666666666666655544
No 21
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=61.80 E-value=91 Score=25.76 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 117 GAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 117 ~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
..++..++++--=++|+|.-..+-+..=+..+...-.+.++++..++.+..|.++
T Consensus 21 ~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 75 (173)
T PRK13460 21 WTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEA 75 (173)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667899998888888877777777777777777776666666655
No 22
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.08 E-value=85 Score=25.18 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~ 202 (217)
++.|+..++.+..|+.-++.+...++.++..=..+++..-.+++++-.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444444444443
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.62 E-value=99 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027924 171 KLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 171 KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~Aag 213 (217)
-|..|..+-|+++-+-..+|+.+...|+..-..+-.+|++...
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~ 119 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA 119 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556667777777777777888887777777777777776554
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.17 E-value=99 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=10.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 181 DELIRGRTKLRQAGKQIQGVINSAYKI 207 (217)
Q Consensus 181 ~E~~RGrtkLr~aG~qIq~l~~s~yK~ 207 (217)
+++...+..++.....++.+-.....+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~l~~~~~~~ 142 (191)
T PF04156_consen 116 EDLQELRELLKSVEERLDSLDESIKEL 142 (191)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444433333
No 25
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=58.35 E-value=1e+02 Score=25.15 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 114 TAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 114 a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
+...-++..++++--=++|||.-..+-+..=+..+...-.+.++.+..++.+..|.++
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQ 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555899999988888877777777777777777777777776666
No 26
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.21 E-value=2.9e+02 Score=30.44 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 027924 73 VHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA 107 (217)
Q Consensus 73 ~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A 107 (217)
..+...++.|..+...|+.|....-..-.+.+..+
T Consensus 240 e~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~ 274 (1353)
T TIGR02680 240 ERLEALERALRNFLQRYRRYARTMLRRRATRLRSA 274 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999986554444444443
No 27
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=57.12 E-value=1.8e+02 Score=27.60 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHhhccCchhHHHHHhhhhhcCh-HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRA--------------DTKVKQLRQSIDRLKAESEKLEKVA 176 (217)
Q Consensus 112 ~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SE-EaLl~~a--------------e~~V~eLr~svdllk~Es~KL~era 176 (217)
++.+|++++..+++||-+=+..+.+.+.-+..+ ...++.. -.+.+.|+..+..+.+...+|+-..
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888899999998777666655433322 1222211 1455888888888999999999888
Q ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Q 027924 177 LVAEDELIRGR---TKLRQAGKQIQGVINSAYKIE 208 (217)
Q Consensus 177 ~~AE~E~~RGr---tkLr~aG~qIq~l~~s~yK~E 208 (217)
..+--|+-+|+ .+|+.--+-++++...+.++.
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~ 313 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLS 313 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 566666666666666555443
No 28
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.77 E-value=77 Score=23.35 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK 206 (217)
...++...+-++.++..+|.+.+|...+.+.+-.--++....--++...-..+..+-.++.+
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34578888888899999999999998877766665566666555555555555555554443
No 29
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=54.67 E-value=1.3e+02 Score=25.33 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=32.3
Q ss_pred HHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 122 GSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 122 glllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
.++|+--..+|+|....+-+..=+..+.+--.+.++++..++.+..|.+.
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445889999888888777766666666666665555555555444
No 30
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.07 E-value=1.2e+02 Score=27.95 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=39.7
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLS--------------RADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~--------------~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
+|-.+..+-.++|-|...--=-+-|+.+...-.--..-+. .++.++.++...+..+.++.+.....
T Consensus 185 ~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 185 NPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp SHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444556666543333333333 33333444444444444333333322
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 027924 176 ALVAEDELIRGRTKLRQAGKQIQG 199 (217)
Q Consensus 176 a~~AE~E~~RGrtkLr~aG~qIq~ 199 (217)
...-+.++.....+|..|.+=|.+
T Consensus 265 ~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 265 KQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhccHHHHHhh
Confidence 333334444444444444443333
No 31
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=53.46 E-value=23 Score=25.70 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027924 145 ESLLSRADTKVK---QLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 145 EaLl~~ae~~V~---eLr~svdllk~Es~KL~er 175 (217)
.+|...|++..+ +++..++.++.|+.||+.|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 567778887765 6888999999999998754
No 32
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.29 E-value=3e+02 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 69 LTASVHFQQTLDYLQDVKSEYAAYEDAAV 97 (217)
Q Consensus 69 ~~ss~h~~~~~d~l~~~~seY~~yEd~~f 97 (217)
+.|..|=| |.|..+..-|++|+..|=
T Consensus 337 ~~~ddH~R---DALAAA~kAY~~yk~kl~ 362 (652)
T COG2433 337 SVSDDHER---DALAAAYKAYLAYKPKLE 362 (652)
T ss_pred CCCCchHH---HHHHHHHHHHHHHHHHHH
Confidence 34556655 678888899999999765
No 33
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=52.00 E-value=1.1e+02 Score=23.87 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 116 GGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 116 g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
+.-++..++|+--=++|||.-..+-+..=+..+.+.-.+.++++..++.+..|.++
T Consensus 9 ~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~ 64 (140)
T PRK07353 9 PLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQ 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555788888888777776776666666666666666666666555
No 34
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=51.84 E-value=1.5e+02 Score=25.27 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcCh-HHHHHHHHHHHHHHHHHH
Q 027924 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRADTKVKQLRQSI 162 (217)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SE-EaLl~~ae~~V~eLr~sv 162 (217)
+++.+++++|+++ +++.++..++....+ +.++..|+.+.+.++...
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~ 54 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEA 54 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666 667777777654443 456666666666554443
No 35
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=51.77 E-value=1.2e+02 Score=24.10 Aligned_cols=53 Identities=8% Similarity=0.103 Sum_probs=28.3
Q ss_pred HHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESE 170 (217)
Q Consensus 118 a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~ 170 (217)
.++..++++--=.+|+|.-..+-+..=+..+...-...++++..++.+.+|.+
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~ 62 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYE 62 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444678888877776665555555444444444444444444433
No 36
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.37 E-value=2.2e+02 Score=28.38 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhhhHHHhh---hChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHH
Q 027924 81 YLQDVKSEYAAYEDAAV---GKVKEGIHVAA---SHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTK 154 (217)
Q Consensus 81 ~l~~~~seY~~yEd~~f---~kiKegv~~A~---shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~ 154 (217)
++..+... .+.+.|| .+|++ +|. ....+..++...+|+=++-+-+.-|=.. .++..++. ..+....+
T Consensus 138 ~i~~ilp~--~~~~~FfFDGE~I~~---la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~-~~~~~~~~-~~~~~~~~ 210 (650)
T TIGR03185 138 FINELLPL--ELADLFFFDGEKIEA---LANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNV-LRRRKKSE-LPSSILSE 210 (650)
T ss_pred HHHHhCCH--hHHHHhcccHHHHHH---HhccccchHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHhcc-cchHHHHH
Confidence 44444433 4666777 67754 343 2334566666666766644444433221 22233322 23444445
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLE-------KVALVAEDELIRGRTKLRQAGKQ 196 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~-------era~~AE~E~~RGrtkLr~aG~q 196 (217)
+++|...++.+..+.+.+. .....++.+...=+.++++.|..
T Consensus 211 ~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 211 IEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 5555555444444444443 33334444444333444444443
No 37
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=50.02 E-value=1.4e+02 Score=24.19 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHh
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVA 107 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~seY~~yEd~~f~kiKegv~~A 107 (217)
+..++..|+-..+.+.+.+...++.|.+ ..|..+.+| |+| +..+--..|+.+= .+-+-+..+
T Consensus 84 ~~e~l~~al~~E~~vt~~~~~l~~~A~~----~~D~~t~~f------l~~~fl~eQ~e~~~~~~-~~l~~l~~~ 146 (161)
T cd01056 84 GLEALELALDLEKLVNQSLLDLHKLASE----HNDPHLADF------LESEFLEEQVESIKKLA-GYITNLKRV 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----cCCHhHHHH------HHHHhhHHHHHHHHHHH-HHHHHHHHh
Confidence 7789999999999999999999999998 677666655 555 5555444444333 333334444
No 38
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=49.84 E-value=50 Score=27.82 Aligned_cols=59 Identities=31% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL-----IRGRTKLRQAGKQIQGVINSAYK 206 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~-----~RGrtkLr~aG~qIq~l~~s~yK 206 (217)
-...++++..++...+..+.|.++|++.+..+|++- ++.+-.+-.+.=||-=++.||.-
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~ 131 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITA 131 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999998887777653 33445555566666656655543
No 39
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=49.78 E-value=68 Score=29.33 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (217)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~ 177 (217)
+++.+|.+.|+++=-+| =.+.|.+.-+.++..||+..+.++.|.+.|..+..
T Consensus 12 ~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 12 AAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred HHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666654444 45678888899999999999999999998887743
No 40
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=49.59 E-value=1.4e+02 Score=24.16 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=40.6
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
+..++++--=++|||.-..+-+..=+..+.+.-...++++..++.+++|.+...
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l 68 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETIL 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455678999999998888888888888888888888888877777733
No 41
>PRK15022 ferritin-like protein; Provisional
Probab=48.48 E-value=1.4e+02 Score=25.37 Aligned_cols=66 Identities=11% Similarity=0.198 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP 111 (217)
+.+++..|+-..|.|++++..-.+.|.. -.|- .+.+||+|+..|=. =|-..|.+|=+=+..+..++
T Consensus 83 ~~e~fe~al~hEk~vt~~I~~L~~~A~~----~~D~------~t~~FL~wfv~EQ~-eEe~~~~~ild~l~~~~~~g 148 (167)
T PRK15022 83 LEELFQKTLEEYEQRSSTLAQLADEAKA----LNDD------STLNFLRDLEKEQQ-HDGLLLQTILDEVRSAKLAG 148 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCH------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999999999999998887 4444 45566777777654 34456777766677776554
No 42
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=48.32 E-value=1.6e+02 Score=24.37 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=29.8
Q ss_pred HHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 122 GSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 122 glllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
.++++--=++|||....+-+..=+..+...-.+.++.+..++.+..|.++
T Consensus 28 Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (175)
T PRK14472 28 FVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRE 77 (175)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444446789998888877766666655555555555544444444443
No 43
>PRK11677 hypothetical protein; Provisional
Probab=48.03 E-value=67 Score=26.76 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (217)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~ 177 (217)
|+..+++++|++++|- +-++. +.=++=|.-+..++.+.+++|+.|+..=.++.+|.+...
T Consensus 8 i~livG~iiG~~~~R~----~~~~~-~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~ 67 (134)
T PRK11677 8 IGLVVGIIIGAVAMRF----GNRKL-RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMA 67 (134)
T ss_pred HHHHHHHHHHHHHHhh----ccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666543 22221 222334567888888888888888888888888877654
No 44
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=46.57 E-value=37 Score=25.45 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhh----hHHHHHHHHHHHH
Q 027924 37 NAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTAS----VHFQQTLDYLQDV 85 (217)
Q Consensus 37 ~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss----~h~~~~~d~l~~~ 85 (217)
+||.+|.--...-. ..+.+|..|++-+|..-.+|| .+++++|+.|+.+
T Consensus 11 ~aV~~a~~~~~~~~-~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~qL~~l 62 (63)
T PF12758_consen 11 DAVEQAVSAASGSE-EQQKAIQRAKNALSSAYANSSDAEREQLRQFQDQLDQL 62 (63)
T ss_pred HHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 34444443333222 677889999998888888887 4788888888753
No 45
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=46.41 E-value=16 Score=29.49 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.2
Q ss_pred hhhhhhHHHhhhChhhHHHHHHHHHHhhc
Q 027924 98 GKVKEGIHVAASHPFITAGGAIGLGSFLL 126 (217)
Q Consensus 98 ~kiKegv~~A~shP~~a~g~a~~aglllL 126 (217)
.|+ +..+++||.+-.|++.++|.++.
T Consensus 20 ekl---~rk~kenP~VPlG~l~t~aal~~ 45 (100)
T KOG4431|consen 20 EKL---LRKAKENPLVPLGCLGTTAALTA 45 (100)
T ss_pred HHH---HHHHHhCCCeeehHHHHHHHHHH
Confidence 566 77889999999999999888864
No 46
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=46.06 E-value=1.7e+02 Score=24.24 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
.+....++..++|+--=++|||+-..+-+..=+..+...-.+.++.+..++.+..|.++
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQ 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666667899999888887776666665555555555555544444443
No 47
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=45.83 E-value=1.9e+02 Score=24.51 Aligned_cols=27 Identities=11% Similarity=-0.086 Sum_probs=14.6
Q ss_pred hhhhhhHHHhhhChhhHHHHHHHHHHh
Q 027924 98 GKVKEGIHVAASHPFITAGGAIGLGSF 124 (217)
Q Consensus 98 ~kiKegv~~A~shP~~a~g~a~~agll 124 (217)
+.+++.-.++.-|=..++-+.++++++
T Consensus 113 ~~~~~~r~~a~~nl~aa~~~~~aa~v~ 139 (144)
T PF11657_consen 113 DLVREARKAAILNLVAAVLVLLAACVA 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666654444444444433
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=45.45 E-value=89 Score=24.54 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhccCchhH-HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 115 AGGAIGLGSFLLKRPRHF-LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 115 ~g~a~~aglllLr~PRRf-Lyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
+++.+.+++.+.-|+.-+ =|+.-......-+.-+...+++-+.|+..|+.+++....+++.
T Consensus 9 l~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 9 LALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 334444444444455433 3444444555555555566666666666666666655555555
No 49
>PF15456 Uds1: Up-regulated During Septation
Probab=45.28 E-value=88 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027924 160 QSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (217)
Q Consensus 160 ~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l 200 (217)
..||.+|+|.+.|..|.-..-.-+. =.+|+|+++.-|.++
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3577888888888887666555555 566777777666655
No 50
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=44.89 E-value=1.2e+02 Score=28.72 Aligned_cols=70 Identities=27% Similarity=0.380 Sum_probs=50.8
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027924 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAA 212 (217)
Q Consensus 139 grF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~Aa 212 (217)
..|.+|+.| +..+.-+..++..+..+.+|+..+.+.-..+- .+|+..|..+-..|+.|...+-.|-.+|.
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888886 67788888888777777777776443322111 46778888888889999988888877764
No 51
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=44.56 E-value=1.9e+02 Score=26.79 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=52.1
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh-------hhChhhHHHHHH
Q 027924 47 KIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA-------ASHPFITAGGAI 119 (217)
Q Consensus 47 k~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A-------~shP~~a~g~a~ 119 (217)
|+..|+.|-|++--..-+.|... -..|..++..|.+|+.+|...-..++|.||--++-- ..--+.-||+++
T Consensus 11 k~ai~tad~aldlynk~ldqvip--w~tf~~tikelsrfk~eysq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~t 88 (299)
T PF06109_consen 11 KNAIDTADKALDLYNKYLDQVIP--WQTFNDTIKELSRFKQEYSQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTT 88 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHhhhCC--chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHH
Confidence 45556666666665555555443 457999999999999999999999999999766643 334566777775
Q ss_pred H
Q 027924 120 G 120 (217)
Q Consensus 120 ~ 120 (217)
-
T Consensus 89 q 89 (299)
T PF06109_consen 89 Q 89 (299)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=44.01 E-value=1.8e+02 Score=23.91 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=29.5
Q ss_pred hhHHHHHhhhhhcChHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHH
Q 027924 130 RHFLYYNTLRLFASEESL-----------LSRADTKVKQLRQSIDRLKAESEKLE-KVALVAEDELIRGRTK 189 (217)
Q Consensus 130 RRfLyr~TlgrF~SEEaL-----------l~~ae~~V~eLr~svdllk~Es~KL~-era~~AE~E~~RGrtk 189 (217)
.+|||.-..+.+..=... -..|+...++++..+...+.|.+.+. +.-..|+.+...-+.+
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~ 99 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEK 99 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887666655444333 34444445555555555555555522 2233344444443333
No 53
>PRK14160 heat shock protein GrpE; Provisional
Probab=43.93 E-value=2.3e+02 Score=25.26 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179 (217)
Q Consensus 143 SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~A 179 (217)
|+|+.+...+..+..|...++.+++|...|.++...+
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~ 87 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRT 87 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777766554433
No 54
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.83 E-value=1.6e+02 Score=23.05 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAED---ELIRGRTKLRQAGKQIQGV 200 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~---E~~RGrtkLr~aG~qIq~l 200 (217)
+|..-|.||+..=.+|.+++-|++.|.+--..... +...||..|.+.-.|++.-
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67788899999999999999999998865444444 3556788888888777653
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.67 E-value=2.2e+02 Score=24.96 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HHHHHHH----hhh
Q 027924 27 SLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYA--AYEDAAV----GKV 100 (217)
Q Consensus 27 ~~~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~--~yEd~~f----~ki 100 (217)
+.++..-||....=+..-=-+.....+..-+...+.++.+++.+........++.+.....+.. .-|+.-. ...
T Consensus 72 ~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 72 DSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred eCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhhh---------------ChhhHHHHHHHHHHhhcc-Cchh
Q 027924 101 KEGIHVAAS---------------HPFITAGGAIGLGSFLLK-RPRH 131 (217)
Q Consensus 101 Kegv~~A~s---------------hP~~a~g~a~~aglllLr-~PRR 131 (217)
+..+..+.. .=+.++|+++.+|++|=+ .|||
T Consensus 152 ~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l~prR 198 (206)
T PRK10884 152 QKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHLIPRR 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccccc
No 56
>PRK10404 hypothetical protein; Provisional
Probab=42.28 E-value=1.7e+02 Score=23.06 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=33.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 027924 57 IEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (217)
Q Consensus 57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~ 128 (217)
++..|+|....-+..-..+..+.+.+-. .+.-....++.+=.++=.+| +|++|+++.+|+|+-||
T Consensus 36 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~av-------GiaagvGlllG~Ll~RR 101 (101)
T PRK10404 36 YVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGI-------GVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcC
Confidence 5555555544444444444444442222 22222233333334443333 47899999999997654
No 57
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=41.32 E-value=2.3e+02 Score=25.56 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 027924 162 IDRLKAESEKLEKVALVAEDELIRGRTKL 190 (217)
Q Consensus 162 vdllk~Es~KL~era~~AE~E~~RGrtkL 190 (217)
.+-++++++||++....-.+++.++.++-
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444444444333
No 58
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=41.28 E-value=2.4e+02 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=21.1
Q ss_pred hhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 130 RRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
.+|+|....+.+..=+..+.+--...+.++...+.+.++.++
T Consensus 71 ~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~ 112 (204)
T PRK09174 71 SRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQ 112 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776655555554444444444444444444444444433
No 59
>PRK14161 heat shock protein GrpE; Provisional
Probab=40.86 E-value=2.4e+02 Score=24.34 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=30.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 142 ~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
.+|+.+..-++.-|..++..++.++.|.+.|.++..-+--||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Aef 49 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEI 49 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888888877776654444443
No 60
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.58 E-value=1.6e+02 Score=22.40 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHh
Q 027924 73 VHFQQTLDYLQDVKSEYAAYEDAAV--GKVKEGIHVA 107 (217)
Q Consensus 73 ~h~~~~~d~l~~~~seY~~yEd~~f--~kiKegv~~A 107 (217)
..|++.++-+..+.++...+|...= ..+.+.+...
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555556666666555555443 3334444444
No 61
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.80 E-value=2.7e+02 Score=24.75 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 027924 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSR-----------ADTKVKQLRQSIDRLKAESEKLE-KVALVAEDE 182 (217)
Q Consensus 115 ~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~-----------ae~~V~eLr~svdllk~Es~KL~-era~~AE~E 182 (217)
...-+...++|+--=++|||+-..+-+.-=+.-+.+ |++..+++++.+...+.|.+.+. +.-..|+.+
T Consensus 8 ~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~ 87 (250)
T PRK14474 8 VVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQ 87 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556789999887766554443333 33344445555555555555532 223334444
Q ss_pred HHhhHHHHHHHHHHH
Q 027924 183 LIRGRTKLRQAGKQI 197 (217)
Q Consensus 183 ~~RGrtkLr~aG~qI 197 (217)
-.+-..+-+....++
T Consensus 88 ~~~il~~A~~ea~~~ 102 (250)
T PRK14474 88 RQHLLNEAREDVATA 102 (250)
T ss_pred HHHHHHHHHHHHHHH
Confidence 433333333333333
No 62
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=39.40 E-value=1.2e+02 Score=31.15 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=56.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH--------HHHHHH--hhhhhhHHHhhhChhhHHHHHHHHHHhhcc
Q 027924 58 EASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA--------YEDAAV--GKVKEGIHVAASHPFITAGGAIGLGSFLLK 127 (217)
Q Consensus 58 ~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~--------yEd~~f--~kiKegv~~A~shP~~a~g~a~~aglllLr 127 (217)
+++.-+||||...+..|..+..|.|+.+...-+. |=..|| .-+|.+-.-+++||-.+.++|.+...|.--
T Consensus 340 r~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q 419 (591)
T KOG2412|consen 340 RAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQ 419 (591)
T ss_pred hhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence 4555679999999999999999999988776653 333344 557888888999999999998877666544
Q ss_pred Cch
Q 027924 128 RPR 130 (217)
Q Consensus 128 ~PR 130 (217)
-|+
T Consensus 420 ~Pd 422 (591)
T KOG2412|consen 420 FPD 422 (591)
T ss_pred Cch
Confidence 444
No 63
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.99 E-value=81 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=19.1
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (217)
Q Consensus 140 rF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL 172 (217)
+..+-..-+...+.+.+.++...+.++.|.++|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455566666666666666666666666
No 64
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=38.80 E-value=1.2e+02 Score=21.62 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=27.4
Q ss_pred hhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 140 LFASEES-LLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 140 rF~SEEa-Ll~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
-|.+... ....|+.+..+-+..|+.++.++++|..+
T Consensus 26 ~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 26 AYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344443 48889999999999999999999988754
No 65
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.51 E-value=3.6e+02 Score=25.70 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=50.9
Q ss_pred HHHhhccCchhHHHHHhhhhhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 027924 121 LGSFLLKRPRHFLYYNTLRLFAS-EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (217)
Q Consensus 121 aglllLr~PRRfLyr~TlgrF~S-EEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a 193 (217)
..+=+.+.-|+|+..+-||-=++ -|+.-+.-+..+....++++.+-.|..++.+....--.|+-+--+.|.++
T Consensus 96 i~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~ 169 (300)
T KOG2629|consen 96 IAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNT 169 (300)
T ss_pred HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788999888888777 34555555666666777777777777777777666666777777777666
No 66
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.36 E-value=3.3e+02 Score=25.29 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=55.2
Q ss_pred CchhHHHHHhhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 128 RPRHFLYYNTLRL-FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 128 ~PRRfLyr~Tlgr-F~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
.|+.-+|-.+++- .+.-+.-++..+.++..+...|+.+-+...++..-..-..+++-.-..++...-++|.-+-..
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888887 788888888888877777777777777777776666666667766666666666666554443
No 67
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=37.14 E-value=1.8e+02 Score=21.99 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=27.8
Q ss_pred hhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 130 RRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
-+|+|....+-|..=++.+.+...++++++..++.+..|.++
T Consensus 17 ~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~ 58 (132)
T PF00430_consen 17 NKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEE 58 (132)
T ss_dssp HHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 567888887777777777777777777777766666666655
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.07 E-value=2.2e+02 Score=25.92 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
..+..+++|+..+-.+..|++++.+|...+|+.|
T Consensus 49 ~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 49 ALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555
No 69
>PRK00708 sec-independent translocase; Provisional
Probab=36.83 E-value=3.1e+02 Score=24.59 Aligned_cols=22 Identities=5% Similarity=0.176 Sum_probs=12.6
Q ss_pred HHHhhccCchhHH-HHHhhhhhc
Q 027924 121 LGSFLLKRPRHFL-YYNTLRLFA 142 (217)
Q Consensus 121 aglllLr~PRRfL-yr~TlgrF~ 142 (217)
+..|++-||.++= .=+++|++.
T Consensus 14 vVaLvV~GPkrLP~~~R~lGk~v 36 (209)
T PRK00708 14 IVLIVVVGPKDLPPMLRAFGKMT 36 (209)
T ss_pred HHHHhhcCchHHHHHHHHHHHHH
Confidence 3345666888863 345566553
No 70
>PRK11677 hypothetical protein; Provisional
Probab=35.87 E-value=1e+02 Score=25.62 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=37.5
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027924 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAY 92 (217)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~y 92 (217)
..+..-++.++.+|.|-++--..||.++-+-|+.+...|+..
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999864
No 71
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.74 E-value=1.3e+02 Score=24.14 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=38.6
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94 (217)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd 94 (217)
..+..-++.++.+|.+-++.=..||.++-+.|..+-..|+..-+
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~ 71 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQ 71 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999987544
No 72
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=35.66 E-value=2.2e+02 Score=24.73 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred CcccCCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027924 25 SQSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKV 100 (217)
Q Consensus 25 ~~~~~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~ki 100 (217)
+-++-++.||+|+|+.. +.+.++.-|+.|-- -..++-..+.+..-...-|+.|....-.+
T Consensus 108 ~Y~~~~t~~~lD~a~~~-------~~~ll~~~i~lAe~---------E~~l~~L~~ei~kT~rRVNalE~v~IP~~ 167 (201)
T PRK02195 108 EYSLLNTPIWVDTGIEL-------LKELVQLKIEAEVL---------QERLLLLEEELRKTTQRVNLFEKVLIPET 167 (201)
T ss_pred CcCCccCCHHHHHHHHH-------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34555688999998743 45555555554433 22344455555555555555555555333
No 73
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.34 E-value=2.6e+02 Score=23.23 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=37.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 142 ~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
.+.+++-+.-+++++..+..|+.+.+--.+|++-++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999998888999988888644
No 74
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=33.98 E-value=78 Score=25.38 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 172 L~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
+-+|...|...+++-.-.|+.+|.+|++.|..
T Consensus 65 ~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666777888888889999999999988764
No 75
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.93 E-value=3.2e+02 Score=23.86 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027924 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (217)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~ 204 (217)
..++..-++|+..|+.+.+|+++|++. +++--.||+-+..|.+-+...
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~--------~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEI--------QSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777777654 566677888887777766543
No 76
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.74 E-value=2e+02 Score=21.42 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHh
Q 027924 45 YRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSF 124 (217)
Q Consensus 45 ~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~agll 124 (217)
+-+.+.+.....++.++.++.+.-+....+..... +.+..+++......=..|++==..+ =+|++|+++.+|+|
T Consensus 17 l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~L 90 (94)
T PF05957_consen 17 LARSAADLAGEKADEARDRAEEALDDARDRAEDAA---DQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGLL 90 (94)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333322 2333333333333333333322222 26789999999999
Q ss_pred hccC
Q 027924 125 LLKR 128 (217)
Q Consensus 125 lLr~ 128 (217)
+=||
T Consensus 91 l~RR 94 (94)
T PF05957_consen 91 LRRR 94 (94)
T ss_pred HhCC
Confidence 8654
No 77
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=33.61 E-value=1.9e+02 Score=30.67 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 027924 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDY--LQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (217)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~--l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~ 128 (217)
++..++++++||++.+|+++-..-..|.|-. ...+.+.=..+-++|+..--+.+.-.-.++.......+.+--|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (944)
T PRK12779 16 EQARSTLESSRSELEELQQSEAVGVFQKQLALLQKRLLNDPASLRNMFIADGTQAIVWEFQQPELGEAFTTTLWELLLRG 95 (944)
T ss_pred HHHhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHhcCCcCHHHHHHHHHHHHcC
Confidence 4556889999999999999876665554433 35666777788889887776777777778888888888888888887
Q ss_pred c------hhHHHHHhhhh
Q 027924 129 P------RHFLYYNTLRL 140 (217)
Q Consensus 129 P------RRfLyr~Tlgr 140 (217)
- -||||+-.|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~ 113 (944)
T PRK12779 96 DDMSIILQRFIWALPLKF 113 (944)
T ss_pred CcHHHHHHHHHHhCchhH
Confidence 5 58999877753
No 78
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.49 E-value=2.4e+02 Score=22.19 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l 200 (217)
||.=|+--++=|=.+-+-+......|+++...+..+..+-+.+++....+|+.|
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777788887777777777777777777666665
No 79
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=33.42 E-value=1.8e+02 Score=27.08 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=38.7
Q ss_pred HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 027924 135 YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (217)
Q Consensus 135 r~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a 193 (217)
++.+-+|++.+++.. ...++..-+..+++|+++|..-..-|.+++++=+.+....
T Consensus 188 ~~~~~~~~~~~~~~~----~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 188 RNDIDKFQEREDEKI----LHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred hchhhhhhhhhhHHH----HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334667777766633 3444555566688899999988889999998877775543
No 80
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=33.36 E-value=86 Score=22.46 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~e 174 (217)
..+.|+.+..+-.+.+++++.+++++..
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888887653
No 81
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.12 E-value=3.1e+02 Score=23.40 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=48.8
Q ss_pred ChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHH
Q 027924 143 SEESLLS---RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI----QGVINSAYK 206 (217)
Q Consensus 143 SEEaLl~---~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qI----q~l~~s~yK 206 (217)
|.+.+|. .|.++++.++..++.++.+....-+..-.-|...++.|.+|+..-+.+ ..-++.+|-
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 4555555 445677788888888888888877777778888899999999988888 556777774
No 82
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=32.88 E-value=2.1e+02 Score=27.69 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHH
Q 027924 153 TKVKQLRQSIDRLKAESEKLEK-----VALVAEDELIRG--------RTKLRQAGKQIQGVINSAYK 206 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~e-----ra~~AE~E~~RG--------rtkLr~aG~qIq~l~~s~yK 206 (217)
++-+||+.+|-.+..|+.||.+ +|..|=+-.+.| ...|+.+|..+...+.-+.+
T Consensus 8 ~kskE~~enik~l~~~~~~~~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~~ 74 (378)
T TIGR00984 8 QKSQELQESIKQLQDRSGKLNESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAWE 74 (378)
T ss_pred HhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999984 333333333444 33455555555555544443
No 83
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=32.44 E-value=3e+02 Score=22.97 Aligned_cols=52 Identities=10% Similarity=-0.109 Sum_probs=28.4
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
...+++|--=++|||.-..+.+..=..-+...-...++.+..++.+..|.++
T Consensus 32 Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 83 (184)
T CHL00019 32 INLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARA 83 (184)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555788888777766655555554444444444444444444333
No 84
>PRK06285 chorismate mutase; Provisional
Probab=32.23 E-value=1.2e+02 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.413 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
.+..+.+++|..||.+-.++-+ |.+|+.++++
T Consensus 4 ~~~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~ 36 (96)
T PRK06285 4 SAEKRLNEIRKRIDEIDEQIIDLIAERTSLAKE 36 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999 5688877764
No 85
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=32.00 E-value=3.1e+02 Score=23.13 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=40.1
Q ss_pred chhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 129 PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
-+.|+|.-..+.+..=+..+...-.+.+.+|+.++.+++|.++.+
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L 65 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQI 65 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999988899999999999988888854
No 86
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=31.66 E-value=2e+02 Score=24.41 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=40.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 027924 54 DSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAAS 109 (217)
Q Consensus 54 d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~s 109 (217)
--.+|-+...+|.++ .+|..+..-|..+...|+.|++-+-.+++-||.++.-
T Consensus 15 ~k~~e~a~~el~k~~----~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~ 66 (148)
T COG2882 15 KKEEEEAAIELSKIR----SEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW 66 (148)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334555666666655 5788888889999999999999999999888877654
No 87
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=31.40 E-value=1e+02 Score=29.24 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK 189 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtk 189 (217)
.+.|+..+....+.+-+|+.|.++..+|..-.+.++++..+=|++
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999999999999999999999886654
No 88
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=31.39 E-value=2.6e+02 Score=22.02 Aligned_cols=43 Identities=0% Similarity=0.081 Sum_probs=27.1
Q ss_pred chhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 129 PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
=.+|||....+-+..=+.-+.+--.+.++.+...+.+..|.++
T Consensus 12 l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~ 54 (147)
T TIGR01144 12 CMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQV 54 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888777777666666665555555555555555555554
No 89
>PRK14148 heat shock protein GrpE; Provisional
Probab=31.08 E-value=3e+02 Score=24.23 Aligned_cols=19 Identities=11% Similarity=0.455 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~ 173 (217)
++.++..++.++.|...|.
T Consensus 42 ~~~l~~~l~~l~~e~~elk 60 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFK 60 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 90
>PF13997 YqjK: YqjK-like protein
Probab=30.88 E-value=51 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=20.0
Q ss_pred hhHHHhhhChhhHHHHHHHHHHhhccCchhHH
Q 027924 102 EGIHVAASHPFITAGGAIGLGSFLLKRPRHFL 133 (217)
Q Consensus 102 egv~~A~shP~~a~g~a~~aglllLr~PRRfL 133 (217)
+++...+.||.+.+|+.+ ++.+++||+++
T Consensus 31 ~~l~~lr~~~~l~~g~~a---~~~ir~P~r~~ 59 (73)
T PF13997_consen 31 QTLRSLRRHPILGSGVLA---LYGIRHPRRLI 59 (73)
T ss_pred HHHHHHHHhHHHHHHHHH---HHHHhChHHHH
Confidence 345577889997666544 55667899854
No 91
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=30.58 E-value=44 Score=26.05 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~K 171 (217)
-||+|+...+||.+.|+..|++.++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998876
No 92
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=30.20 E-value=3.3e+02 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 027924 191 RQAGKQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 191 r~aG~qIq~l~~s~yK~E~~Aag 213 (217)
-..+++|.++-..+-|+|.|+.+
T Consensus 339 ~~~~k~~~~~~~~i~k~~~q~~~ 361 (391)
T smart00435 339 EKKKKQIERLEERIEKLEVQATD 361 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44568999999999999998753
No 93
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=30.04 E-value=51 Score=28.64 Aligned_cols=31 Identities=32% Similarity=0.252 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHhhccCchhH------HHHHhhhhhc
Q 027924 112 FITAGGAIGLGSFLLKRPRHF------LYYNTLRLFA 142 (217)
Q Consensus 112 ~~a~g~a~~aglllLr~PRRf------Lyr~TlgrF~ 142 (217)
+++.|.++.+++-.|||.|.+ .--.|+|||-
T Consensus 7 ~~~~g~~~~la~s~lpgsralk~~dcevci~~l~rf~ 43 (178)
T KOG4154|consen 7 VATIGFAARLALSSLPGSRALKEEDCEVCIKTLGRFA 43 (178)
T ss_pred HHHHHHHHHHHHHhCCccccCCcccchHHHHHHHHHH
Confidence 468899999999999999986 5668899984
No 94
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=29.97 E-value=3.8e+02 Score=23.46 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027924 187 RTKLRQAGKQIQGVI 201 (217)
Q Consensus 187 rtkLr~aG~qIq~l~ 201 (217)
+..+.++-.+++...
T Consensus 152 ~~~~~~a~~~l~~~~ 166 (334)
T TIGR00998 152 RKALLSAKAALNAAI 166 (334)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 95
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=29.61 E-value=4.2e+02 Score=23.86 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=48.5
Q ss_pred HHHHHhhhhhcChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 132 FLYYNTLRLFASEESLLSRADTKVKQLRQ--SIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (217)
Q Consensus 132 fLyr~TlgrF~SEEaLl~~ae~~V~eLr~--svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~ 209 (217)
+|...|-+-+..=+..+...+..++.|+. ...+-..+.+||.+...-|+........+.+.++..+......+-+.=+
T Consensus 59 ~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~ 138 (286)
T PF11727_consen 59 YLVKETEDFLGDIKLHKEQVDHRVERLRSLEKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAA 138 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444444444444431 1122225667777888888888888888888888877777666655555
Q ss_pred hh
Q 027924 210 QA 211 (217)
Q Consensus 210 ~A 211 (217)
.|
T Consensus 139 ~A 140 (286)
T PF11727_consen 139 KA 140 (286)
T ss_pred Hh
Confidence 55
No 96
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=28.95 E-value=2.2e+02 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027924 149 SRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~K 171 (217)
...-...++++..++.+..+...
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 29 EKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555444444333
No 97
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.54 E-value=2.3e+02 Score=20.47 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (217)
..+.++......+|.+.....+|+.+-+..|.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777788888777777766
No 98
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=28.54 E-value=2.3e+02 Score=24.02 Aligned_cols=99 Identities=13% Similarity=0.195 Sum_probs=56.9
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh-hhChhhHHH-------
Q 027924 45 YRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA-ASHPFITAG------- 116 (217)
Q Consensus 45 ~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A-~shP~~a~g------- 116 (217)
|++.+.-.+|+ ++-.+...+.+...||.-. ++.+..+|+.-+|.+|.+=-+.+... .-|.....+
T Consensus 28 Y~QrL~g~~~e----~~~~v~~F~~~A~~~f~~~---~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~ 100 (167)
T PF11157_consen 28 YQQRLGGHLDE----LRRQVAGFQATAARYFGGD---REALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQA 100 (167)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCC---HHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88877666555 4555555777777776543 45677888888888883221111111 112222222
Q ss_pred HHHHHHHhhccCchhHHHHHhhhhhc-----ChHHHHHH
Q 027924 117 GAIGLGSFLLKRPRHFLYYNTLRLFA-----SEESLLSR 150 (217)
Q Consensus 117 ~a~~aglllLr~PRRfLyr~TlgrF~-----SEEaLl~~ 150 (217)
.-..=.+.+++.|..=+.++|+..|+ |.|.+.-+
T Consensus 101 ~~~~r~~~~~~~~d~~i~~~t~~~f~p~vplt~~gi~~g 139 (167)
T PF11157_consen 101 SPFERAWYFLRPADPEIAQETWQNFSPAVPLTPEGIVFG 139 (167)
T ss_pred ChHHHHHHHHhcccHHHHHHHHHhCCCcCcCCHHHHHHH
Confidence 22223356777778888888887775 45554433
No 99
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.28 E-value=2.2e+02 Score=25.96 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEK--LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~K--L~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~ 207 (217)
+..+..-|.-|+..+..+|++.+| .++. ++||----.|...+.+||.++..-|.+
T Consensus 99 LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-----edlQDem~Dlmd~a~EiQE~Lgr~y~~ 155 (218)
T KOG1655|consen 99 LKDTQATVAAMKDTNKEMKKQYKKVNIDKI-----EDLQDEMEDLMDQADEIQEVLGRNYNT 155 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 567888999999999999999988 4454 567777789999999999999988864
No 100
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.25 E-value=3e+02 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027924 181 DELIRGRTKLRQAGKQIQGVINSAYK 206 (217)
Q Consensus 181 ~E~~RGrtkLr~aG~qIq~l~~s~yK 206 (217)
+...+=+.++.+.-.+|+.++.+.|+
T Consensus 92 kq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 92 KQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444455666667777777777665
No 101
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=27.65 E-value=41 Score=23.45 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=12.8
Q ss_pred hhhChhhHHHHHHHHHHhh
Q 027924 107 AASHPFITAGGAIGLGSFL 125 (217)
Q Consensus 107 A~shP~~a~g~a~~aglll 125 (217)
.++||.+..|++.++|.+.
T Consensus 1 ~ke~plv~ig~~~~~~~l~ 19 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALA 19 (54)
T ss_dssp S-S--CHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 3689999999888887754
No 102
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=27.54 E-value=3.1e+02 Score=24.57 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=42.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 027924 29 EDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH 105 (217)
Q Consensus 29 ~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~ 105 (217)
-++.+|+|.|+ ..+.+.++.-|+.|-- -..|+-..+.++.-+..-|+.|...+-.+++.+.
T Consensus 120 ~~t~~~ld~a~-------~~~~elle~li~lae~---------e~~~~~L~~Ei~~T~RRVNalE~~iIP~l~~tik 180 (211)
T COG1394 120 LSTSAWLDEAI-------EKFEELLEKLIELAEL---------ETTLRLLLEEIRKTKRRVNALEYVIIPRLENTIK 180 (211)
T ss_pred cCCcHHHHHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 66889999976 5677777777777654 3456677777777777777777777655544443
No 103
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.47 E-value=3.8e+02 Score=24.66 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred HhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027924 136 NTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (217)
Q Consensus 136 ~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l 200 (217)
.....+.--+..+...+.++..|+...+....|.++|++.+...+..+.|-..=+..-+.+-.|-
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 34455555667778888888888888888888888888777777777776655444444443333
No 104
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=26.32 E-value=3.5e+02 Score=21.91 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=32.8
Q ss_pred HHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 121 aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
..++++--=++|||.-..+.+..=+..+..--...+..+..++.+..|.++
T Consensus 17 nflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 67 (164)
T PRK14473 17 NFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEA 67 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555789999888888776666666555555555555555555544
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.17 E-value=3.4e+02 Score=21.63 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l 200 (217)
+.+.......+...+..++.++++..+.+..|+..|-|--.+=-.+.+.|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~l 64 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQL 64 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44566677777788888888888888899999888776655444444444433
No 106
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.89 E-value=5.1e+02 Score=24.15 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 133 LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 133 Lyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~------era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
-||.+|--.++ .|..|...|.--+.+..|++||. .+....|.||.|--.+...+..||-++=+.
T Consensus 125 ~yR~~LK~IR~-------~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 125 QYRIHLKSIRN-------REESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 36666665544 45555555555556666666665 366778888888888888888888665443
No 107
>PLN02829 Probable galacturonosyltransferase
Probab=25.56 E-value=2.2e+02 Score=29.67 Aligned_cols=92 Identities=21% Similarity=0.124 Sum_probs=61.5
Q ss_pred HHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHH----
Q 027924 93 EDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAE---- 168 (217)
Q Consensus 93 Ed~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~E---- 168 (217)
=|..+..+||-+.+|+..|.|+-.-+-.--.--|+.--+= ..+.+|---+-..|-..+..+++.|.+.+...|.-
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e-~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~~d~ 259 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKE-VQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDC 259 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH-HHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcccCH
Confidence 4788899999999999998766544433322223222211 24455555555556667889999999988776654
Q ss_pred ---HHHHHHHHHHHHHHHHh
Q 027924 169 ---SEKLEKVALVAEDELIR 185 (217)
Q Consensus 169 ---s~KL~era~~AE~E~~R 185 (217)
.+||..-....|+++..
T Consensus 260 ~~~~~KLr~~l~~~Ee~~~~ 279 (639)
T PLN02829 260 SIVVKKLRAMLHSAEEQLRV 279 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788887788877653
No 108
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=25.30 E-value=4.6e+02 Score=22.91 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 119 IGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 119 ~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~K 171 (217)
+...++++--=++|||.-..+-+..=+.-+.+.-...++.+..++.++.|.+.
T Consensus 12 iInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 64 (246)
T TIGR03321 12 LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEE 64 (246)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556789998887777665555555444444444444444444443
No 109
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=25.00 E-value=2.7e+02 Score=26.77 Aligned_cols=96 Identities=18% Similarity=0.086 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhcc-CchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---H
Q 027924 113 ITAGGAIGLGSFLLK-RPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGR---T 188 (217)
Q Consensus 113 ~a~g~a~~aglllLr-~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGr---t 188 (217)
+.+.|++.+..+++| +++.-|-++.-.++..-...+......-..-......+-++...|+.....+.-|-.+++ .
T Consensus 137 iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~~~~~~~ 216 (650)
T PF04632_consen 137 IGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPRLRRRRR 216 (650)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCchhHHHHH
Confidence 344556667778887 677777777777776555555443322111111333444455555555455544443333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027924 189 KLRQAGKQIQGVINSAYKIE 208 (217)
Q Consensus 189 kLr~aG~qIq~l~~s~yK~E 208 (217)
.++..-.++.+++..+.-++
T Consensus 217 ~~~~l~~~~~~l~~~~~~l~ 236 (650)
T PF04632_consen 217 RLRALQARLLRLLALLRSLA 236 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 110
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=24.80 E-value=4.5e+02 Score=22.61 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=42.8
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 027924 26 QSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH 105 (217)
Q Consensus 26 ~~~~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~ 105 (217)
-++-.+.+|+|+|. ..+.+.++.-|+.|-. -..|+.+.+.+..-...-|+.|..+.=.+++.+.
T Consensus 119 y~l~~t~~~~d~a~-------~~~~~~l~~li~lA~~---------e~~~~~L~~eI~~T~RRVNALE~vvIP~l~~~ik 182 (209)
T TIGR00309 119 YGLLFTSYKVDEAA-------EIYEEAVELIVELAEI---------ETTIRLLAEEIEITKRRVNALEHVIIPRLKNTIK 182 (209)
T ss_pred cCcccCCHHHHHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566889999965 5566666666666644 3456677777777777777777777755544443
No 111
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.62 E-value=2.1e+02 Score=21.44 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
..++++|+..++.++.+..++..+...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888888888887776666554
No 112
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=24.60 E-value=5.2e+02 Score=25.80 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=14.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHH
Q 027924 31 GNPWIDNAVQQVMIYRKIVEESIDSA 56 (217)
Q Consensus 31 ~~~wi~~a~~qa~~~qk~~~es~d~a 56 (217)
..||.-+-++.|++-+....++++..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f 98 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQF 98 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34454444455666666666665543
No 113
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.59 E-value=4.3e+02 Score=24.86 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (217)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~ 209 (217)
..-.+.|.+.++.+.++..+|.++..... +=..++++.-.||.++.+.+-.++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777777643333 5567788888888888888777665
No 114
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=24.27 E-value=4.8e+02 Score=26.93 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=56.1
Q ss_pred HhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027924 136 NTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (217)
Q Consensus 136 ~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~ 204 (217)
..||.|. |.-|-+--+--+....+-..+..|..|.++-..-||.++--=-.||+.|.+||..+|+.=
T Consensus 20 ~~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~r 86 (604)
T KOG3564|consen 20 EILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRR 86 (604)
T ss_pred HHhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 3567777 566677778888888899999999999999999999998888889999999999888753
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=24.19 E-value=3e+02 Score=21.74 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (217)
-+++|.+|...++.+..|...|......+-+|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554444443
No 116
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.16 E-value=87 Score=21.61 Aligned_cols=11 Identities=27% Similarity=-0.073 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 027924 115 AGGAIGLGSFL 125 (217)
Q Consensus 115 ~g~a~~aglll 125 (217)
.++++.+|+++
T Consensus 28 f~~G~llg~l~ 38 (68)
T PF06305_consen 28 FLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 117
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.96 E-value=7.3e+02 Score=25.30 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=19.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 142 ~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
.+++......++++.+|+..++.+..++..+.
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~ 348 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELE 348 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666655555544
No 118
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=23.76 E-value=3.8e+02 Score=22.47 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=19.2
Q ss_pred HHHhhhhhcChH----HHHHHHHHHHHHHHHHHHHHH
Q 027924 134 YYNTLRLFASEE----SLLSRADTKVKQLRQSIDRLK 166 (217)
Q Consensus 134 yr~TlgrF~SEE----aLl~~ae~~V~eLr~svdllk 166 (217)
+....|.-..|- ..++.|..+++++++.....+
T Consensus 59 ~~~~~gls~~e~~~~~~~l~ea~~~i~~i~~~~~~i~ 95 (199)
T PF10112_consen 59 FLKEAGLSDREYEYIREILEEAKEKIRRIEKAIKRIR 95 (199)
T ss_pred HhhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456667666663 355566666666666555443
No 119
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.65 E-value=3.1e+02 Score=28.21 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a 193 (217)
..+++|++||..|..+.++++.++.-.+..|.++.+=+.++++.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~ 126 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDS 126 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777776666665555565555555444443
No 120
>PRK10304 ferritin; Provisional
Probab=23.51 E-value=4.4e+02 Score=22.00 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHH
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHF 75 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~ 75 (217)
+.+++.+++-..+.+..++..+++.|.. ..|..+..|
T Consensus 83 ~~e~~~~~l~~E~~vt~~i~~l~~~A~~----~~D~~t~~f 119 (165)
T PRK10304 83 LDELFQETYKHEQLITQKINELAHAAMT----NQDYPTFNF 119 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHhHHHH
Confidence 6789999999999999999999999998 677776665
No 121
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.35 E-value=3.4e+02 Score=24.12 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=36.1
Q ss_pred hhhhhcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027924 137 TLRLFASEESL---LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (217)
Q Consensus 137 TlgrF~SEEaL---l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~ 204 (217)
|+|+|+-++-+ +.+|+.+|++++..++.+..|+.-+.. +||.+-.-|-++++.+
T Consensus 113 ~i~~~V~~~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~--------------~lke~~~~i~~l~~~i 169 (181)
T COG4345 113 TIGIEVYPKELEEKLADAMEEVERIEKTIEELVSELESLAN--------------KLKEVTDVINSLVERI 169 (181)
T ss_pred eeeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 56777766554 567888999998888888777654432 5566555555555443
No 122
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.35 E-value=2.7e+02 Score=21.54 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (217)
..-++++.+.|+..++.+.+++.++.+....-+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888899999999999999888877666555443
No 123
>PRK11530 hypothetical protein; Provisional
Probab=23.31 E-value=1.5e+02 Score=26.29 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=29.6
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRA--DTKVKQLRQSIDRLKAESEKLEKVALVAED 181 (217)
Q Consensus 147 Ll~~a--e~~V~eLr~svdllk~Es~KL~era~~AE~ 181 (217)
++++| +.+|..|+++|..+..|..+|-+++..-|.
T Consensus 16 lLagCa~q~ev~ql~~~vs~LNqem~~Lt~qa~aleq 52 (183)
T PRK11530 16 LLAGCAQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQ 52 (183)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56676 678999999999999999999998776664
No 124
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.29 E-value=1.3e+02 Score=21.97 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~e 174 (217)
+|.||..-|.+|+.|+.+++.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEA 42 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999988764
No 125
>PRK07857 hypothetical protein; Provisional
Probab=23.22 E-value=1.7e+02 Score=23.59 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 152 DTKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 152 e~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
....+++|..||.+-.|+-+ |.+|+.++.+
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~e 57 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQA 57 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999 6688877754
No 126
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.19 E-value=4.8e+02 Score=22.34 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR-----------GRTKLRQAGKQIQGVIN 202 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~R-----------GrtkLr~aG~qIq~l~~ 202 (217)
-+.+.+.|+...+.++.+...|.......|+.... =-..|+..+.||+.-+.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555444443333333322 22345555555554443
No 127
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.97 E-value=3.4e+02 Score=20.51 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 144 EEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
-+.-..-.+++.+.++..++.+.++..++.+....-+..|
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777777766655444444
No 128
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=22.38 E-value=4.4e+02 Score=21.66 Aligned_cols=45 Identities=9% Similarity=-0.020 Sum_probs=23.0
Q ss_pred hccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 125 LLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAES 169 (217)
Q Consensus 125 lLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es 169 (217)
++--=.+|||+...+-+..=+.-+...-...++.+..++.+..|.
T Consensus 32 l~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 32 VIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345688887766665544444444444444444444444333
No 129
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=22.32 E-value=2.3e+02 Score=19.61 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=22.0
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 138 LRLFASEESLLSRADTKVKQLRQSIDRLKAESE 170 (217)
Q Consensus 138 lgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~ 170 (217)
+.-+.+.+-.+..|+.+..+=+..+++++.+++
T Consensus 24 ~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 24 RKLTSNDRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445777777777777777777776654
No 130
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.22 E-value=2.7e+02 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (217)
+-+.+..+|+..++.|.+|.++|.+....=|++|.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888999999999999988888888875
No 131
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.18 E-value=4.2e+02 Score=26.10 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027924 145 ESLLSRADTKVKQLRQSI-----DRLKAESEKLEKVALVAEDELIRG--RTKLRQAGKQIQGVINSAYKIERQA 211 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~sv-----dllk~Es~KL~era~~AE~E~~RG--rtkLr~aG~qIq~l~~s~yK~E~~A 211 (217)
++|+..+|+-||+|...+ .-...|.++.++|...|-..|..= +..+-+-.++......-|.++|.+-
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qL 295 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQL 295 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHH
Confidence 468999999999997643 344455555555555444444321 1222333455555666666666543
No 132
>PRK09239 chorismate mutase; Provisional
Probab=21.94 E-value=2.5e+02 Score=22.07 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEK-LEKVALVAEDE 182 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~K-L~era~~AE~E 182 (217)
...++.+||..||.+-.++-+ |.+|+.++++=
T Consensus 8 ~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~I 40 (104)
T PRK09239 8 APAELAALRQSIDNIDAALIHMLAERFKCTQAV 40 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999 56888777653
No 133
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.90 E-value=3.2e+02 Score=19.88 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (217)
Q Consensus 143 SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (217)
+-+.+....+.+.+.+...++-++++.+.+.+...-.++.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666665554444433
No 134
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.73 E-value=3.5e+02 Score=20.24 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
.+-+...+|+..+.-++.|.+.+.+...-|+..+
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555689999999999998888877777765
No 135
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=21.11 E-value=6.3e+02 Score=26.23 Aligned_cols=21 Identities=43% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 027924 174 KVALVAEDELIRGRTKLRQAGK 195 (217)
Q Consensus 174 era~~AE~E~~RGrtkLr~aG~ 195 (217)
+| ..+|.++.+-+.+|-|+||
T Consensus 360 er-~~ae~~LR~~QdeLvQA~k 380 (603)
T COG4191 360 ER-EQAEAALRRAQDELVQAGK 380 (603)
T ss_pred HH-HHHHHHHHHHHHHHHHHHH
Confidence 44 6789999999999999997
No 136
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.10 E-value=2.7e+02 Score=19.31 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
...+++++|+..++.++.|.++|.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 137
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.03 E-value=6.1e+02 Score=22.74 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=33.7
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 133 LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA 179 (217)
Q Consensus 133 Lyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~A 179 (217)
.|..+..++..|-..+..-++-+++++..++.|..|-....+....-
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777788888888888777777665554433
No 138
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.89 E-value=3.7e+02 Score=20.20 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (217)
Q Consensus 143 SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (217)
|=+.-..-.+++.+.|+..++.+.++.+++.++....+..+.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888888888888888888888888776666554
No 139
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=20.62 E-value=2.5e+02 Score=22.11 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhH
Q 027924 53 IDSAIEASRSRLSQTRLTA-SVHFQQTLDYLQDVKSEYAAYE-----DAAVGKVKEGI 104 (217)
Q Consensus 53 ~d~ai~aa~s~~s~~~~~s-s~h~~~~~d~l~~~~seY~~yE-----d~~f~kiKegv 104 (217)
++.|+.--+++..+|-..| ...|..+.+-|..+..+.-.++ |.|..++|+-+
T Consensus 20 ~~~A~~qM~~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~ 77 (120)
T PF08785_consen 20 FQKAIQQMKNVIEQLVSDSGDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKL 77 (120)
T ss_dssp CCHHHHHHHHHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4555666666666666666 7778888888888877777666 66777777744
No 140
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.43 E-value=3.1e+02 Score=27.53 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~ 173 (217)
.+-+...+.+.++|.+.++.+++|.+.+.
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~s 96 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLN 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556677777777777776666433
No 141
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=20.42 E-value=3.1e+02 Score=24.72 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027924 153 TKVKQLRQSIDRLKAES 169 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es 169 (217)
+.+|.|+..++-.|.|-
T Consensus 33 q~~Kql~KA~NIAKse~ 49 (199)
T PF08717_consen 33 QELKQLKKAMNIAKSEF 49 (199)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 45555666666655553
No 142
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=20.28 E-value=5.1e+02 Score=21.63 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEK---LEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~K---L~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
.++.++...+...++.+++.++ |.++=..++.++..=+..+..+-.+++.+-..
T Consensus 20 ~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 76 (265)
T TIGR00999 20 KMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQAEVQAAKSE 76 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666655 44454567788888788888777777766443
No 143
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.16 E-value=2.6e+02 Score=25.45 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHH--------------HHHHHHHHHHHHHHHHHHh
Q 027924 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG---RTKLR--------------QAGKQIQGVINSAYKIERQ 210 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG---rtkLr--------------~aG~qIq~l~~s~yK~E~~ 210 (217)
++..++..|++.-..+++++.+|+.+.+.-+.++.+= +..-- -+...|++...-|-.+|++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k 254 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERK 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999988888776542 22211 3455666666666666654
No 144
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.15 E-value=2.1e+02 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLEKVAL 177 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~ 177 (217)
|+.||+-|+.|..+.+.|+.+.+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999998887654
Done!