Query 027924
Match_columns 217
No_of_seqs 32 out of 34
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 77.8 16 0.00056 29.3 9.2 58 146-203 66-123 (147)
2 1z6o_M Ferritin heavy chain; m 71.1 27 0.00091 28.3 9.0 70 35-111 105-175 (191)
3 2efr_A General control protein 69.0 46 0.0016 27.2 10.5 69 146-214 84-152 (155)
4 1ic2_A Tropomyosin alpha chain 65.6 30 0.001 24.7 7.3 49 159-207 5-53 (81)
5 3u1c_A Tropomyosin alpha-1 cha 62.8 45 0.0015 24.8 9.0 66 149-214 26-91 (101)
6 2b5u_A Colicin E3; high resolu 53.2 92 0.0032 30.3 10.3 65 151-215 319-383 (551)
7 3bbp_D GRIP and coiled-coil do 53.1 23 0.0008 26.0 4.9 29 146-174 36-64 (71)
8 2lom_A HIG1 domain family memb 58.2 2.9 9.8E-05 31.8 0.0 30 93-125 13-42 (93)
9 3u1c_A Tropomyosin alpha-1 cha 45.2 92 0.0031 23.1 10.3 59 145-203 36-94 (101)
10 2lon_A HIG1 domain family memb 48.4 5.3 0.00018 30.7 0.0 30 94-126 15-44 (99)
11 2efr_A General control protein 41.9 1.4E+02 0.0048 24.3 10.0 55 148-206 13-67 (155)
12 3pev_B Nucleoporin GLE1; RECA, 39.4 1.2E+02 0.004 26.8 8.2 67 63-130 51-125 (297)
13 3oja_A Leucine-rich immune mol 38.6 1.9E+02 0.0067 25.4 9.5 57 147-203 429-485 (487)
14 3oja_B Anopheles plasmodium-re 38.0 2E+02 0.007 25.7 9.7 35 141-175 518-552 (597)
15 3iv1_A Tumor susceptibility ge 37.3 1.2E+02 0.0042 22.3 9.2 52 147-202 4-56 (78)
16 2z5i_A TM, general control pro 36.8 92 0.0031 21.0 5.6 23 149-171 8-30 (52)
17 1kd8_B GABH BLL, GCN4 acid bas 35.6 71 0.0024 20.7 4.6 28 148-175 3-30 (36)
18 2v66_B Nuclear distribution pr 35.5 1.5E+02 0.0053 22.9 8.1 48 151-198 1-55 (111)
19 2ke4_A CDC42-interacting prote 34.8 57 0.0019 24.6 4.7 35 152-186 61-95 (98)
20 3ghg_A Fibrinogen alpha chain; 34.4 3.4E+02 0.012 26.5 13.4 99 53-186 62-163 (562)
21 3m48_A General control protein 33.7 59 0.002 20.8 3.9 26 149-174 3-28 (33)
22 4emc_A Monopolin complex subun 33.4 1.9E+02 0.0065 24.6 8.1 58 140-197 14-71 (190)
23 2xzr_A Immunoglobulin-binding 33.2 1.8E+02 0.006 22.9 11.0 40 174-213 62-101 (114)
24 2dfs_A Myosin-5A; myosin-V, in 33.1 2.5E+02 0.0085 28.7 10.4 12 160-171 991-1002(1080)
25 3hnw_A Uncharacterized protein 32.9 1.8E+02 0.0061 22.9 10.1 47 152-198 81-127 (138)
26 1qu7_A Methyl-accepting chemot 32.8 2E+02 0.007 23.6 8.3 61 148-208 9-69 (227)
27 1cii_A Colicin IA; bacteriocin 32.8 3.4E+02 0.012 26.5 10.6 69 145-213 341-409 (602)
28 2dfs_A Myosin-5A; myosin-V, in 32.4 2.5E+02 0.0084 28.8 10.2 21 155-175 993-1013(1080)
29 3zx6_A HAMP, methyl-accepting 30.8 2.6E+02 0.0088 24.0 10.1 64 146-209 87-150 (341)
30 4etp_A Kinesin-like protein KA 30.5 1.8E+02 0.0061 26.3 8.1 18 156-173 13-30 (403)
31 1go4_E MAD1 (mitotic arrest de 29.2 98 0.0034 23.7 5.2 33 153-185 12-44 (100)
32 2wq1_A General control protein 28.3 1.2E+02 0.004 19.4 4.6 27 148-174 2-28 (33)
33 3azd_A Short alpha-tropomyosin 26.8 18 0.00061 23.0 0.6 31 153-183 4-34 (37)
34 3na7_A HP0958; flagellar bioge 25.9 2.8E+02 0.0097 23.0 10.7 77 127-205 87-163 (256)
35 3oja_A Leucine-rich immune mol 25.1 3.5E+02 0.012 23.8 9.7 53 147-199 422-474 (487)
36 3plt_A Sphingolipid long chain 24.9 3.4E+02 0.012 23.5 9.2 132 33-202 19-159 (234)
37 3rmi_A Chorismate mutase prote 24.6 1.4E+02 0.0048 22.5 5.4 31 151-181 10-41 (114)
38 1i84_S Smooth muscle myosin he 24.0 4.2E+02 0.014 27.0 10.1 39 166-204 884-922 (1184)
39 3oja_B Anopheles plasmodium-re 23.7 3.9E+02 0.013 23.8 10.2 65 145-209 515-579 (597)
40 2yo3_A General control protein 23.5 1.6E+02 0.0054 26.2 6.2 40 151-211 214-253 (268)
41 2d8d_A Aroag, phospho-2-dehydr 23.4 1.3E+02 0.0044 21.2 4.7 28 154-181 4-32 (90)
42 4etp_B Spindle POLE BODY-assoc 23.2 2.6E+02 0.009 25.6 7.7 48 160-207 10-57 (333)
43 1lrz_A FEMA, factor essential 22.7 2.2E+02 0.0075 25.0 7.0 57 151-208 245-301 (426)
44 3tnu_A Keratin, type I cytoske 22.4 2.6E+02 0.0088 21.2 7.7 23 150-172 35-57 (131)
45 2r2v_A GCN4 leucine zipper; co 21.7 1.7E+02 0.0057 18.8 4.6 27 148-174 3-29 (34)
46 2zvf_A Alanyl-tRNA synthetase; 21.1 1.4E+02 0.0048 22.8 4.9 28 153-180 32-59 (171)
47 1eum_A Ferritin 1; ECFTNA, met 21.0 2.8E+02 0.0096 21.1 7.1 51 35-95 83-133 (165)
48 4etp_A Kinesin-like protein KA 20.8 2.8E+02 0.0097 25.0 7.5 28 148-175 12-39 (403)
49 1ecm_A Endo-oxabicyclic transi 20.5 1.5E+02 0.0051 21.6 4.7 28 154-181 6-34 (109)
50 1ybz_A Chorismate mutase; cons 20.2 1.6E+02 0.0054 21.5 4.7 29 153-181 17-46 (91)
51 3cvf_A Homer-3, homer protein 20.2 2.6E+02 0.009 20.5 6.1 44 158-201 11-54 (79)
52 3u06_A Protein claret segregat 20.2 3.6E+02 0.012 24.5 8.1 25 151-175 15-39 (412)
53 2jd6_0 Ferritin homolog, ferri 20.2 2.9E+02 0.0098 20.9 7.9 62 35-107 83-144 (174)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=77.80 E-value=16 Score=29.28 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
.+...|++++.+....+..+-.++.+..+|+-.||.....=-..|+..|..|++|--+
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3456789999999999999999999999999999999999999999999999998654
No 2
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=71.12 E-value=27 Score=28.26 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHhhhCh
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHP 111 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~seY~~yEd~~f~kiKegv~~A~shP 111 (217)
+.+++..|+-+.|.+.+++...++.|.. -++..+.||. |+|++ +..+--.-|..+.+.|-+=..++..+|
T Consensus 105 ~~e~le~aL~~Ek~v~~~i~~l~~~a~~----~~D~~d~~~~---d~Le~~fl~EQve~~~~l~~~i~~l~k~~~~~~ 175 (191)
T 1z6o_M 105 GVEALEHALSMESDVTKSIRNVIKACED----DSEFNDYHLV---DYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHE 175 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCCCHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 6689999999999999999999999987 4566777765 55555 555555566666777755556665554
No 3
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=69.02 E-value=46 Score=27.16 Aligned_cols=69 Identities=16% Similarity=0.304 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~AagL 214 (217)
..+..|+.+.+.---+|.-+-+++.+|++........++.=.-.|.++-.+|.++..-.|.+++..+.|
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 467788888888888888888888899999888888899899999999999999999999999876544
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=65.61 E-value=30 Score=24.69 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 159 RQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (217)
Q Consensus 159 r~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~ 207 (217)
+..|..++.|.....+++..+|.++..-.-...+...+|.+|-+.+--+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444333
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.83 E-value=45 Score=24.84 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 027924 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGM 214 (217)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~AagL 214 (217)
..|+.+++.+.+..+..-.|..-|..+...-|.|+-+=...|..+-..+..--+..-+.|...++|
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666677667777776666666666666666666666555555443
No 6
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=53.20 E-value=92 Score=30.32 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGML 215 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~AagLl 215 (217)
|+++++..|..++...+-...+.||...++.=+.--|+.|-.+-+++-..+..+-..++.+-++|
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 45666666666666666667777887788888888888998888999999988888888887776
No 7
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=53.05 E-value=23 Score=26.03 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~e 174 (217)
.||+-.++..-.|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999999999999974
No 8
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=58.24 E-value=2.9 Score=31.79 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=23.4
Q ss_pred HHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhh
Q 027924 93 EDAAVGKVKEGIHVAASHPFITAGGAIGLGSFL 125 (217)
Q Consensus 93 Ed~~f~kiKegv~~A~shP~~a~g~a~~aglll 125 (217)
|..+..|+ +.-+++||++-+|++.++|.++
T Consensus 13 ~e~~~~K~---~rk~ke~PlvpIg~~~~~~vl~ 42 (93)
T 2lom_A 13 EEDQGSKL---IRKAKEAPFVPVGIAGFAAIVA 42 (93)
Confidence 55666777 7778999999999877776665
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.19 E-value=92 Score=23.10 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
|.-...++..|..|...+.++..|..++.+++..|-..+--+.-.+-.+=.++.+|-+.
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555544444444433333333344444333
No 10
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=48.40 E-value=5.3 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhc
Q 027924 94 DAAVGKVKEGIHVAASHPFITAGGAIGLGSFLL 126 (217)
Q Consensus 94 d~~f~kiKegv~~A~shP~~a~g~a~~aglllL 126 (217)
..+..|+ +.-+++||++-+|++.+++.++.
T Consensus 15 es~~~K~---~rk~ke~PlvpIg~l~~~~vl~~ 44 (99)
T 2lon_A 15 DCVSEKL---LRKTRESPLVPIGLGGCLVVAAY 44 (99)
Confidence 4566777 77789999999998877766653
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.93 E-value=1.4e+02 Score=24.27 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYK 206 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK 206 (217)
...|++++.+... +-.++.+-++|+..||.....=-..|+..|..|++|--+--|
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seek 67 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhH
Confidence 3556666666544 778888888888888888877778888888888887665444
No 12
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=39.41 E-value=1.2e+02 Score=26.77 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=45.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HH--hhhhhhHHHhhhChhhHHHHHHHHHHhhccCch
Q 027924 63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDA------AV--GKVKEGIHVAASHPFITAGGAIGLGSFLLKRPR 130 (217)
Q Consensus 63 ~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~------~f--~kiKegv~~A~shP~~a~g~a~~aglllLr~PR 130 (217)
.+.||. +|..|.+...+.|..+.++.+..... +| .-|+.+-.-+..||..+-++|.++.-++-..|.
T Consensus 51 ~igQLt-~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~ 125 (297)
T 3pev_B 51 KFGQLT-NSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPE 125 (297)
T ss_dssp HHHHCC-SBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTT
T ss_pred hhcccc-CCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCcc
Confidence 456775 77889888888888887664332222 11 335566666678999999999887766655554
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.56 E-value=1.9e+02 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s 203 (217)
...+..+.++.++..++.++.|-++|.+-+.-..++...-+.+|.++-.+=+.|++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 333444445555555555555555555555555555555566666666666655544
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.00 E-value=2e+02 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=15.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 141 FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 141 F~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
.+..+..+.+-++++++++...+.+++|..+|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 33333344444444444444444444444455443
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.26 E-value=1.2e+02 Score=22.30 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=30.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVK-QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (217)
Q Consensus 147 Ll~~ae~~V~-eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~ 202 (217)
|++..+-++. .|+..++....|++-|..- +.|+..|.+||..--.+|++--.
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT----~~EL~~G~~KL~~mi~~l~~E~~ 56 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRT----EEDLKKGHQKLEEMVTRLDQEVA 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444444443 4666666666666665443 66777777777766666655443
No 16
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=36.75 E-value=92 Score=20.95 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027924 149 SRADTKVKQLRQSIDRLKAESEK 171 (217)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~K 171 (217)
.-||+.|..|..+||.+..|+..
T Consensus 8 efAERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999988776654
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.64 E-value=71 Score=20.74 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
.+.-+.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566788888888888888888887654
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.53 E-value=1.5e+02 Score=22.93 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDE-------LIRGRTKLRQAGKQIQ 198 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E-------~~RGrtkLr~aG~qIq 198 (217)
|+++..+|+..++.+..|...+.........| +++--++||..-..++
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888887777665555544 6666666766655544
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.77 E-value=57 Score=24.59 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027924 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG 186 (217)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG 186 (217)
+.+..|+...+|.++.|+.|+..-.+.+|..-.+|
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~~~~~ 95 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESRVLSN 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 67888899999999999999998777666443333
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.44 E-value=3.4e+02 Score=26.55 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccCc
Q 027924 53 IDSAIEASRSRLSQT---RLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRP 129 (217)
Q Consensus 53 ~d~ai~aa~s~~s~~---~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~P 129 (217)
+..-|.--|+++.+| +.++-++|+++.|+|..-..+-+..++ .++.|-+.|+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN-tynE~S~ELR------------------------ 116 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN-TYNRVSEDLR------------------------ 116 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-HHHHTTHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHH------------------------
Confidence 334444445555444 445556777777777666666666666 5555544443
Q ss_pred hhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027924 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG 186 (217)
Q Consensus 130 RRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG 186 (217)
|++.|= ++.+-+.. ++..-|+..|+.+..|+|||+-- ..+-.+.=||
T Consensus 117 RrIqyL--------KekVdnQl-snIrvLQsnLedq~~kIQRLEvD-IdiqirsCKg 163 (562)
T 3ghg_A 117 SRIEVL--------KRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVD-IDIKIRSCRG 163 (562)
T ss_dssp HHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHGGG
T ss_pred HHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence 222221 34555666 77888999999999999999854 3333444443
No 21
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=33.74 E-value=59 Score=20.77 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 149 SRADTKVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~KL~e 174 (217)
+.-|.+|++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45688999999999999999988865
No 22
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.35 E-value=1.9e+02 Score=24.58 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=42.1
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027924 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (217)
Q Consensus 140 rF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qI 197 (217)
|+.+-+-|+..-+.+..-|++.++-...|++.|.+..+.++.+...-...+......|
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4455566788888888899999999999999999999999999877666665444333
No 23
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=33.17 E-value=1.8e+02 Score=22.86 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027924 174 KVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 174 era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~Aag 213 (217)
.|+----....-.+-++|++..|+-.|++.+|-+|+..+-
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar 101 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333444556778899999999999999999987654
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.09 E-value=2.5e+02 Score=28.75 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 027924 160 QSIDRLKAESEK 171 (217)
Q Consensus 160 ~svdllk~Es~K 171 (217)
..++.+..+.++
T Consensus 991 ~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 991 EEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.86 E-value=1.8e+02 Score=22.86 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027924 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQ 198 (217)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq 198 (217)
++.++++...+..+|.|+..+....-.+++++..=+-++..--++|.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555544454444433333333333333
No 26
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=32.83 E-value=2e+02 Score=23.64 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E 208 (217)
+......+++|..+++......+...+.+..+.+....|...+.+....++.|..++-+|.
T Consensus 9 ~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~ 69 (227)
T 1qu7_A 9 LEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIA 69 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888888888888888889999888888888887776665554
No 27
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.77 E-value=3.4e+02 Score=26.54 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~Aag 213 (217)
..+++.-.++...|||-++..++|.-+++.-....--..-++.+...++-..+..+.+---++|+++.+
T Consensus 341 Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~ 409 (602)
T 1cii_A 341 KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSG 409 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666667777777777777777777776555555556666666666666666655555555555443
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.44 E-value=2.5e+02 Score=28.80 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~er 175 (217)
+.+|+..++.+.+|.+.|+++
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333
No 29
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=30.83 E-value=2.6e+02 Score=24.05 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~ 209 (217)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....+..|..++-+|..
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~ 150 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 150 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677888888888888888888888888888888888888877777777666655543
No 30
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.49 E-value=1.8e+02 Score=26.27 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027924 156 KQLRQSIDRLKAESEKLE 173 (217)
Q Consensus 156 ~eLr~svdllk~Es~KL~ 173 (217)
++|++....+..+.++++
T Consensus 13 ~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=29.18 E-value=98 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027924 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~era~~AE~E~~R 185 (217)
..|..|+..|+-|..|..+|.++-..-|-++-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999999887777776655
No 32
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.26 E-value=1.2e+02 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~e 174 (217)
.+.-|.+|++|-.....+.+|..+|.+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356688999999999999999888865
No 33
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.77 E-value=18 Score=23.03 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (217)
..+..++..|..+..+...+++++..++.++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778888888888888888888777665
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.89 E-value=2.8e+02 Score=22.96 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=57.6
Q ss_pred cCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027924 127 KRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAY 205 (217)
Q Consensus 127 r~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~y 205 (217)
+.||- |..-.....+-+.-...++.++.++-..++.++.+...+.+.....+.++..-+..+...-.+|+.-+..+.
T Consensus 87 ~~~kE--~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERE--LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665 345556666667777888888888888888888888888888888888888888888777777766655443
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.08 E-value=3.5e+02 Score=23.76 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027924 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQG 199 (217)
Q Consensus 147 Ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~ 199 (217)
+...-|.+-+.+++.++..+.|.++|.+.....++++..=--.+..+-.-+|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 33344444444444455555555555554444444444333333333333333
No 36
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.90 E-value=3.4e+02 Score=23.52 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=77.9
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 027924 33 PWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQT---RLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAAS 109 (217)
Q Consensus 33 ~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~---~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A~s 109 (217)
|=.---+++--.-.|++..+.+.+-+-.+.-=+|| -.+.-.-..-.-|-|-.+..++...|+.|-...
T Consensus 19 pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a~~~--------- 89 (234)
T 3plt_A 19 PELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKY--------- 89 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 43333444445556666666666544443322222 222233455555666666667777776665443
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 027924 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDEL 183 (217)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEaLl~~ae~~V~eLr~svdllk~Es~KL~------era~~AE~E~ 183 (217)
==||.+|--.+ ..|..|...|.--+-+..++.||. .+....|.|+
T Consensus 90 ----------------------d~yR~~LK~IR-------~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqEL 140 (234)
T 3plt_A 90 ----------------------DQYRVTLKSIR-------NIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQEL 140 (234)
T ss_dssp ----------------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 12455554433 345666666666666677777776 5677888888
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 027924 184 IRGRTKLRQAGKQIQGVIN 202 (217)
Q Consensus 184 ~RGrtkLr~aG~qIq~l~~ 202 (217)
.|.-.....+-.||-++=+
T Consensus 141 vraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 141 VRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhHH
Confidence 8888888888888855433
No 37
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=24.61 E-value=1.4e+02 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
+.....+||..||.+-.++-+ |.+|+.++.+
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~ 41 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHILAERFRCTQA 41 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999 5578777654
No 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.98 E-value=4.2e+02 Score=26.95 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027924 166 KAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (217)
Q Consensus 166 k~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~ 204 (217)
..+.++|++....++.++..-+..+..+..++..+....
T Consensus 884 e~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~ 922 (1184)
T 1i84_S 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.74 E-value=3.9e+02 Score=23.84 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (217)
Q Consensus 145 EaLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~ 209 (217)
+......+.+.+.+++.++..+.+.+++++....-|.....=+-++...-+++..+...+...+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666777777777777777666666666655555666555666666555555544
No 40
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=23.54 E-value=1.6e+02 Score=26.21 Aligned_cols=40 Identities=20% Similarity=0.469 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E~~A 211 (217)
.+.++.+|...|+.+.++..+++++ ++-+.++||-+|+.-
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~---------------------~~~~~~~~~~~~~~~ 253 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDK---------------------IEEILSKIYHIENEI 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 4456777777777777777776665 455666666666643
No 41
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=23.38 E-value=1.3e+02 Score=21.22 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
...+||..||.+-.++-+ |.+|+.++++
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~ 32 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQE 32 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999 5588887765
No 42
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.17 E-value=2.6e+02 Score=25.57 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027924 160 QSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (217)
Q Consensus 160 ~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~ 207 (217)
...+.++.+.+++++-|..+|+.|..---|+.+.--+=|+|.+||=.+
T Consensus 10 ~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdEl 57 (333)
T 4etp_B 10 KEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQ 57 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 445889999999999999999999999999999988888898887443
No 43
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.69 E-value=2.2e+02 Score=25.04 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~s~yK~E 208 (217)
+..-.++|++.++.+.++..|+++... ...+-++=.+++++.-+||.+.-+.++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877652 112234446889999999999999888874
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.39 E-value=2.6e+02 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027924 150 RADTKVKQLRQSIDRLKAESEKL 172 (217)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL 172 (217)
.+..++.+||..|..+..|++.|
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666555555555443
No 45
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.73 E-value=1.7e+02 Score=18.78 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEK 174 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~e 174 (217)
++.-+.||++|-..-..+.+|..+|.+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888888888888888887765
No 46
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.09 E-value=1.4e+02 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 153 TKVKQLRQSIDRLKAESEKLEKVALVAE 180 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~era~~AE 180 (217)
.+|+.|...+..+++|.++|....+..+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777777666544443
No 47
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=21.04 E-value=2.8e+02 Score=21.13 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDA 95 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~ 95 (217)
+.+++..|+-..+.+.++....++.|.. - ....+.++|+|+..+=-..|+.
T Consensus 83 ~~e~l~~al~~E~~~~~~~~~l~~~a~~----~------~D~~~~~fl~~~l~eq~e~~~~ 133 (165)
T 1eum_A 83 LDELFQETYKHEQLITQKINELAHAAMT----N------QDYPTFNFLQWYVSEQHEEEKL 133 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----T------TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c------CChhHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999886 2 3455666777777664444443
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.80 E-value=2.8e+02 Score=24.96 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
+...+++.++|...+..++.|.+.|.+.
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554
No 49
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.52 E-value=1.5e+02 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
...+||..||.+-.++-+ |.+|+.++++
T Consensus 6 ~L~~lR~~ID~iD~~L~~LL~~R~~~~~~ 34 (109)
T 1ecm_A 6 PLLALREKISALDEKLLALLAERRELAVE 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999 5588877765
No 50
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=20.21 E-value=1.6e+02 Score=21.51 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 153 TKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 153 ~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
....+||..||.+-.++-+ |.+|+..+.+
T Consensus 17 ~~L~~lR~~ID~ID~~Ll~LL~~R~~~~~~ 46 (91)
T 1ybz_A 17 TTLKLLRKEIDKIDNQIISLLKKRLEIAQA 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999 5588877765
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.20 E-value=2.6e+02 Score=20.47 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027924 158 LRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVI 201 (217)
Q Consensus 158 Lr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~ 201 (217)
+-+.+..+..+.+-|+++....|.++...+.+=...-.+|++++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666666666666655544444444444443
No 52
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.16 E-value=3.6e+02 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 151 ADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~er 175 (217)
...+.++|...+..+..|.+.+.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 53
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Probab=20.15 E-value=2.9e+02 Score=20.89 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA 107 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~seY~~yEd~~f~kiKegv~~A 107 (217)
+.+++..++-..+.+.+.....++.|.. . ....+.|+|+++..+....+.. |+.+-+-+..+
T Consensus 83 ~~e~l~~~l~~E~~~~~~~~~~~~~A~~----~------~D~~t~~~l~~~l~eq~e~~~~-l~~~l~~l~~~ 144 (174)
T 2jd6_0 83 PLKAFEAAYEHEKFISKSIYELAALAEE----E------KDYSTRAFLEWFINEQVEEEAS-VKKILDKLKFA 144 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----T------TCHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c------CCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 5688999999999999999998888876 3 3456677788888777676666 44443333333
Done!