Query 027924
Match_columns 217
No_of_seqs 32 out of 34
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 05:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027924.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027924hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 78.3 5.8 0.00042 27.5 7.8 60 154-213 3-67 (72)
2 d1krqa_ a.25.1.1 (A:) Non-hem 34.0 76 0.0055 22.7 8.3 38 35-76 83-120 (165)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.5 81 0.0059 21.6 6.7 37 148-184 90-126 (133)
4 d2d8da1 a.130.1.1 (A:3-82) Cho 29.1 43 0.0031 21.6 4.7 28 154-181 2-30 (80)
5 d1ybza1 a.130.1.1 (A:2-75) mon 28.9 43 0.0032 21.7 4.7 28 154-181 2-30 (74)
6 d2oufa1 a.292.1.1 (A:13-92) Hy 27.9 38 0.0028 23.4 4.4 26 161-186 14-40 (80)
7 d1seta1 a.2.7.1 (A:1-110) Sery 24.5 96 0.007 20.8 8.3 54 146-202 28-81 (110)
8 d1ecma_ a.130.1.1 (A:) Chorism 23.7 59 0.0043 21.3 4.7 28 154-181 2-30 (91)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 22.5 85 0.0062 21.2 5.5 38 155-192 67-104 (107)
10 d1jt6a2 a.121.1.1 (A:73-187) M 22.0 65 0.0047 22.4 4.9 41 79-119 38-81 (115)
11 d1urfa_ a.2.6.1 (A:) Protein k 22.0 63 0.0046 21.9 4.6 30 146-175 43-72 (81)
12 d2p06a1 a.204.1.3 (A:1-84) Hyp 21.8 38 0.0028 23.3 3.4 23 142-164 35-57 (84)
13 d1ad3a_ c.82.1.1 (A:) Aldehyde 21.2 57 0.0041 27.0 5.1 22 52-73 1-22 (446)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.26 E-value=5.8 Score=27.48 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH----HHHHHHHHHHHHHHHHHhhhc
Q 027924 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELI-RGRTKLRQ----AGKQIQGVINSAYKIERQAAG 213 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~era~~AE~E~~-RGrtkLr~----aG~qIq~l~~s~yK~E~~Aag 213 (217)
.+.-|+..|+.-+..+.-...-.--|..+++ +|-.+.+. -.+++++|-....|+|-||++
T Consensus 3 sMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD 67 (72)
T d1k4ta1 3 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 67 (72)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4455555555555444444433344444555 55555444 678999999999999999875
No 2
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}
Probab=34.03 E-value=76 Score=22.70 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHH
Q 027924 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQ 76 (217)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~ 76 (217)
+..++.+|+-+.+.+.+++...++.|.. ..|..+.+|=
T Consensus 83 ~~~~l~~al~~E~~v~~~~~~l~~~A~~----~~D~~t~~fl 120 (165)
T d1krqa_ 83 LLDVFEKTYEHEQFITKSINTLVEHMLT----HKDYSTFNFL 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHH
Confidence 6789999999999999999999999987 6676665553
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.48 E-value=81 Score=21.61 Aligned_cols=37 Identities=3% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (217)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (217)
..-.+++.++|+..++.+.++.+++.+.....+.++.
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888877665555544
No 4
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=29.06 E-value=43 Score=21.62 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
+.++||..||.+-.|+-. |.+|+.++.+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (80)
T d2d8da1 2 RIQALRKEVDRVNREILRLLSERGRLVQE 30 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999 5578777653
No 5
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=28.85 E-value=43 Score=21.67 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
..++||..||.+-.|+-. |.+|+.++.+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (74)
T d1ybza1 2 TLKLLRKEIDKIDNQIISLLKKRLEIAQA 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 6688877765
No 6
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=27.86 E-value=38 Score=23.42 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhh
Q 027924 161 SIDRLKAESEKLEKVALVAEDEL-IRG 186 (217)
Q Consensus 161 svdllk~Es~KL~era~~AE~E~-~RG 186 (217)
+=++.++|++|+.+|.++.|.=+ ++|
T Consensus 14 n~~lv~~ELek~lerlaamE~l~E~~~ 40 (80)
T d2oufa1 14 SKKLSKKELERLLELLALLETFIEKED 40 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999998877 575
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.48 E-value=96 Score=20.83 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~aG~qIq~l~~ 202 (217)
.-|...+.+..++.+.++.+++|...+-+....+-. -|...|.+.++.|..-++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~---~~~~~l~~~~k~lk~~i~ 81 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP---EEKEALIARGKALGEEAK 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHH
Confidence 445566777778888888888877776655432211 234455555555444333
No 8
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=23.65 E-value=59 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027924 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (217)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (217)
...+||..||.+-.++-. |.+|+.++++
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~l~~~ 30 (91)
T d1ecma_ 2 PLLALREKISALDEKLLALLAERRELAVE 30 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999 5678777754
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.53 E-value=85 Score=21.19 Aligned_cols=38 Identities=11% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 027924 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQ 192 (217)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ 192 (217)
...|...++.+..++++|.+....-+++|..=+.+|+.
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766666666665555543
No 10
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=22.01 E-value=65 Score=22.42 Aligned_cols=41 Identities=17% Similarity=-0.047 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHh---hhChhhHHHHHH
Q 027924 79 LDYLQDVKSEYAAYEDAAVGKVKEGIHVA---ASHPFITAGGAI 119 (217)
Q Consensus 79 ~d~l~~~~seY~~yEd~~f~kiKegv~~A---~shP~~a~g~a~ 119 (217)
.+.++.+..-++.||+.|-.-|++|+.-- ..+|-+++-...
T Consensus 38 ~e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~~~~~~il 81 (115)
T d1jt6a2 38 NSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAA 81 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCceeccCHHHHHHHHH
Confidence 36678888889999999999999999643 447766654433
No 11
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.99 E-value=63 Score=21.94 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027924 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (217)
Q Consensus 146 aLl~~ae~~V~eLr~svdllk~Es~KL~er 175 (217)
-.+..|+....+=++.|++++.+++++...
T Consensus 43 K~l~eaq~~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 43 KLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445889999999999999999999888765
No 12
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.78 E-value=38 Score=23.30 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHH
Q 027924 142 ASEESLLSRADTKVKQLRQSIDR 164 (217)
Q Consensus 142 ~SEEaLl~~ae~~V~eLr~svdl 164 (217)
-|||-|+++-=.++.+||..++.
T Consensus 35 fseerllsrlfeemdelreavek 57 (84)
T d2p06a1 35 FSEERLLSRLFEEMDELREAVEK 57 (84)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999998863
No 13
>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.21 E-value=57 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhhh
Q 027924 52 SIDSAIEASRSRLSQTRLTASV 73 (217)
Q Consensus 52 s~d~ai~aa~s~~s~~~~~ss~ 73 (217)
|+|+||++|+.-|.+-+.+|-.
T Consensus 1 ~v~~av~~Ar~Af~~w~~~s~~ 22 (446)
T d1ad3a_ 1 SISDTVKRAREAFNSGKTRSLQ 22 (446)
T ss_dssp CHHHHHHHHHHHHHTTGGGCHH
T ss_pred CHHHHHHHHHHHHHhhCCCCHH
Confidence 5788888888888877776643
Done!