BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027925
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 78 PYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
PY L + R A + IK AY++LA+ +HPD K AE +FI+I AYE+L +
Sbjct: 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDK-------NKDPGAEDRFIQISKAYEILSN 71
Query: 138 EERRRQYD 145
EE+R YD
Sbjct: 72 EEKRTNYD 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 70 ANWADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQ 129
+N + K Y L ++ D + IK AYRRLA+ YHPDV K AEAKF +
Sbjct: 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDV-------SKENDAEAKFKDLA 74
Query: 130 AAYELLIDEERRRQYD 145
A+E+L DE+RR +YD
Sbjct: 75 EAWEVLKDEQRRAEYD 90
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L + R+A +++IK AY +LAK YHPD T + A+ KF ++ AYE+L DE
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD------TNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 139 ERRRQYD 145
+R+QYD
Sbjct: 64 VKRKQYD 70
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L + + A E QIK A+ +LA YHPD K AEAKF +I AYE L D
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDK-------NKSPDAEAKFREIAEAYETLSDA 62
Query: 139 ERRRQYDM 146
RR++YD
Sbjct: 63 NRRKEYDT 70
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L + + A+E +I+ AY+RLA YHPD G + AEAKF +I+ AYE+L D
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG------DKEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
++R YD
Sbjct: 60 QKRAAYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L + + A+E +I+ AY+RLA YHPD G + AEAKF +I+ AYE+L D
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
++R YD
Sbjct: 60 QKRAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L + + A+E +I+ AY+RLA YHPD G + AEAKF +I+ AYE+L D
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDS 59
Query: 139 ERRRQYD 145
++R YD
Sbjct: 60 QKRAAYD 66
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L + R A +E +K AYRRLA +HPD G E F I AY +L +
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATE-------AFKAIGTAYAVLSNP 62
Query: 139 ERRRQYD 145
E+R+QYD
Sbjct: 63 EKRKQYD 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
K Y + ++ D + IK AYRRLA+ YHPDV K AEA+F ++ A+E+L
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDV-------SKEPDAEARFKEVAEAWEVL 57
Query: 136 IDEERRRQYD 145
DE+RR +YD
Sbjct: 58 SDEQRRAEYD 67
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L++ R A E IK AYR+LA +HPD E E AE +F ++ AYE+L D
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDK-----NPENKEEAERRFKQVAEAYEVLSDA 66
Query: 139 ERRRQYD 145
++R YD
Sbjct: 67 KKRDIYD 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L ++ A E IK AYR+LA +HPD + E AE KF + AYE+L D
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDK-----NPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 139 ERRRQYD 145
++R YD
Sbjct: 67 KKRSLYD 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELL 135
K Y+TL L R A +E+IK AYRR A YHPD K AE KF +I AY++L
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-------NKEPGAEEKFKEIAEAYDVL 55
Query: 136 IDEERRRQYD 145
D +R +D
Sbjct: 56 SDPRKREIFD 65
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
YE L++ R A + IK AYRR A +HPD + E AE KF ++ AYE+L D+
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDK-----NPDNKEFAEKKFKEVAEAYEVLSDK 59
Query: 139 ERRRQYD 145
+R YD
Sbjct: 60 HKREIYD 66
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134
E + Y+ L ++ +A +E++K AYR+LA YHPD K KF +I AYE+
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPD---------KNPNEGEKFKQISQAYEV 55
Query: 135 LIDEERRRQYD 145
L D ++R YD
Sbjct: 56 LSDAKKRELYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L ++ DA + ++K AYR++A +HPD K +F +I AYE+L DE
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD---------KNPDGAEQFKQISQAYEVLSDE 61
Query: 139 ERRRQYD 145
++R+ YD
Sbjct: 62 KKRQIYD 68
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 77 SPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLI 136
S Y L L+++A + IK +YR+LA YHPD + E A+ KF +I A+ +L
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK-----NPDNPEAAD-KFKEINNAHAILT 71
Query: 137 DEERRRQYD 145
D +R YD
Sbjct: 72 DATKRNIYD 80
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y L + + A +I+ A+++LA HPD A F+KI AYE+L DE
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 77
Query: 139 ERRRQYD 145
+ R++YD
Sbjct: 78 DLRKKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y L + + A +I+ A+++LA HPD A F+KI AYE+L DE
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPD------KNPNNPNAHGDFLKINRAYEVLKDE 58
Query: 139 ERRRQYD 145
+ R++YD
Sbjct: 59 DLRKKYD 65
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L + A + QIK AY R YHPD G E AE +F +I AY +L
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG-----SAEAAE-RFTRISQAYVVLGSA 73
Query: 139 ERRRQYD 145
RR+YD
Sbjct: 74 TLRRKYD 80
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDG---RGTLEKGETAEAKFIKIQAAYELL 135
Y L + A+ +K Y++L YHPD GT+E+ KFI+I A+++L
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE---CMQKFIEIDQAWKIL 75
Query: 136 IDEERRRQYDMDNRVNP 152
+EE +++YD+ R P
Sbjct: 76 GNEETKKKYDL-QRSGP 91
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y L + A+ +K Y++L YHPD E KFI+I A+++L +E
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 139 ERRRQYDM-----DNR-VNPMKASQAWME 161
E +R+YD+ D R V P+ A Q ++E
Sbjct: 73 ETKREYDLQRCEDDLRNVGPVDA-QVYLE 100
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L ++R+A +++I AYR+LA +HPD + + AE KFI I AA E+L D
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE---KKKAEKKFIDIAAAKEVLSDP 441
Query: 139 ERRRQYD 145
E R+++D
Sbjct: 442 EMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L ++R+A +++I AYR+LA +HPD + + AE KFI I AA E+L D
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE---KKKAEKKFIDIAAAKEVLSDP 441
Query: 139 ERRRQYD 145
E R+++D
Sbjct: 442 EXRKKFD 448
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 79 YETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138
Y+ L + A+E+++K YR+ A YHPD G+T KF +I A+E+L D
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK-------PTGDT--EKFKEISEAFEILNDP 61
Query: 139 ERRRQYD 145
++R YD
Sbjct: 62 QKREIYD 68
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 79 YETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137
Y+ LE+ R+ D++++ AYR LA+ +HPD + E+ AE +F I AYE L D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNK---EEKLLAEERFRVIATAYETLKD 74
Query: 138 EERRRQYD 145
+E + YD
Sbjct: 75 DEAKTNYD 82
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYE 133
D + Y L + + EQI ++ A HPD + + A F K+Q A E
Sbjct: 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKH------PENPKAVETFQKLQKAKE 71
Query: 134 LLIDEERRRQYD 145
+L +EE R +YD
Sbjct: 72 ILTNEESRARYD 83
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPD 107
+ K ++ L ++ A +++ AYR+LA HPD
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
>pdb|3DV2|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
Length = 201
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 27 SFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELER 86
I +F P+Y L + + LN E WF NQ N +S + LEL
Sbjct: 5 GIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELAT 64
Query: 87 DADEE 91
+A+E
Sbjct: 65 EAEEH 69
>pdb|3HFJ|A Chain A, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3HFJ|B Chain B, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3MLA|A Chain A, Banadd In Complex With Inhibitor 1_02
pdb|3MLA|B Chain B, Banadd In Complex With Inhibitor 1_02
pdb|3MLB|A Chain A, Banadd In Complex With Inhibitor 1_02_1
pdb|3MLB|B Chain B, Banadd In Complex With Inhibitor 1_02_1
pdb|3MMX|A Chain A, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|B Chain B, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|C Chain C, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|D Chain D, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|E Chain E, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|F Chain F, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|G Chain G, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
pdb|3MMX|H Chain H, Bacillus Anthracis Nadd (Banadd) In Complex With
Compound 1_02_3
Length = 191
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 27 SFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELER 86
I +F P+Y L + + LN E WF NQ N +S + LEL
Sbjct: 7 GIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELAT 66
Query: 87 DADEE 91
+A+E
Sbjct: 67 EAEEH 71
>pdb|2QTR|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|C Chain C, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
Length = 189
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 27 SFIKVSFRSPNYRPRLSSWFGFRELNRTESWFRVNQRRTVVSAANWADEKSPYETLELER 86
I +F P+Y L + + LN E WF NQ N +S + LEL
Sbjct: 5 GIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELAT 64
Query: 87 DADEE 91
+A+E
Sbjct: 65 EAEEH 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,162,064
Number of Sequences: 62578
Number of extensions: 237017
Number of successful extensions: 669
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 34
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)