Query 027925
Match_columns 217
No_of_seqs 343 out of 1529
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 4.5E-22 1.5E-26 141.7 8.1 74 73-152 4-77 (79)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 4.4E-22 1.5E-26 142.6 7.8 74 73-151 6-79 (82)
3 2ctp_A DNAJ homolog subfamily 99.9 7.4E-22 2.5E-26 140.3 7.7 72 73-151 4-75 (78)
4 1wjz_A 1700030A21RIK protein; 99.9 3.9E-22 1.3E-26 146.4 6.0 78 73-150 13-90 (94)
5 1hdj_A Human HSP40, HDJ-1; mol 99.9 8.7E-22 3E-26 139.6 7.4 69 76-151 3-71 (77)
6 2och_A Hypothetical protein DN 99.8 1.3E-21 4.5E-26 137.3 6.9 68 73-149 5-72 (73)
7 1bq0_A DNAJ, HSP40; chaperone, 99.8 6.6E-22 2.2E-26 147.8 5.1 73 75-153 2-74 (103)
8 2cug_A Mkiaa0962 protein; DNAJ 99.8 2E-21 6.8E-26 141.3 7.4 71 74-151 15-85 (88)
9 2ctw_A DNAJ homolog subfamily 99.8 1.8E-21 6.2E-26 147.0 6.8 70 74-149 15-84 (109)
10 2ctq_A DNAJ homolog subfamily 99.8 1.7E-21 5.9E-26 147.7 6.7 75 73-153 17-91 (112)
11 2dmx_A DNAJ homolog subfamily 99.8 2.1E-21 7.3E-26 142.1 6.7 75 73-152 6-80 (92)
12 2yua_A Williams-beuren syndrom 99.8 3.5E-21 1.2E-25 143.0 8.0 71 73-149 14-84 (99)
13 2ctr_A DNAJ homolog subfamily 99.8 3E-21 1E-25 140.3 7.4 70 73-149 4-73 (88)
14 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 2.2E-21 7.5E-26 146.3 5.4 91 73-170 12-103 (109)
15 2lgw_A DNAJ homolog subfamily 99.8 3.2E-21 1.1E-25 143.4 5.5 71 76-151 2-72 (99)
16 2o37_A Protein SIS1; HSP40, J- 99.8 1.2E-20 4.1E-25 138.3 6.3 67 74-149 6-72 (92)
17 3bvo_A CO-chaperone protein HS 99.8 2.8E-20 9.7E-25 155.2 8.1 83 64-147 30-115 (207)
18 2l6l_A DNAJ homolog subfamily 99.8 2.5E-20 8.7E-25 148.6 6.4 76 73-148 7-82 (155)
19 3apq_A DNAJ homolog subfamily 99.8 7.2E-20 2.5E-24 150.9 5.5 70 76-151 2-71 (210)
20 3hho_A CO-chaperone protein HS 99.8 9.2E-20 3.1E-24 148.3 3.1 74 75-149 3-78 (174)
21 1gh6_A Large T antigen; tumor 99.8 5.6E-20 1.9E-24 140.0 1.5 80 75-164 7-93 (114)
22 2ys8_A RAB-related GTP-binding 99.8 3.5E-19 1.2E-23 130.0 5.4 62 75-143 26-87 (90)
23 3lz8_A Putative chaperone DNAJ 99.8 4.9E-20 1.7E-24 163.5 0.0 69 74-149 26-94 (329)
24 1fpo_A HSC20, chaperone protei 99.7 2.3E-18 7.7E-23 139.8 8.6 72 77-149 2-75 (171)
25 1faf_A Large T antigen; J doma 99.7 5.1E-18 1.7E-22 121.1 4.5 61 75-145 10-72 (79)
26 1iur_A KIAA0730 protein; DNAJ 99.7 1.5E-18 5.2E-23 126.3 1.7 66 73-143 13-78 (88)
27 2pf4_E Small T antigen; PP2A, 99.7 1E-18 3.6E-23 141.8 0.4 65 75-149 10-76 (174)
28 3uo3_A J-type CO-chaperone JAC 99.7 3.6E-18 1.2E-22 139.8 1.9 67 73-148 8-81 (181)
29 3ag7_A Putative uncharacterize 99.7 1.2E-17 4.3E-22 125.4 2.8 65 74-139 39-104 (106)
30 1n4c_A Auxilin; four helix bun 99.7 1.8E-17 6.2E-22 135.4 2.6 66 76-144 117-182 (182)
31 2guz_A Mitochondrial import in 99.6 6.7E-17 2.3E-21 112.9 2.8 57 75-141 13-70 (71)
32 2qwo_B Putative tyrosine-prote 99.6 8.6E-17 2.9E-21 117.8 2.6 59 76-137 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.6 3.6E-17 1.2E-21 158.2 0.1 74 73-152 18-91 (780)
34 2y4t_A DNAJ homolog subfamily 99.1 3.7E-11 1.3E-15 105.5 4.9 70 75-147 381-450 (450)
35 2guz_B Mitochondrial import in 98.9 8.3E-10 2.9E-14 75.5 4.4 53 76-138 4-59 (65)
36 2pzi_A Probable serine/threoni 88.7 0.2 6.8E-06 47.2 2.7 48 73-134 626-675 (681)
37 4a3n_A Transcription factor SO 36.5 57 0.0019 20.7 4.5 41 94-145 14-54 (71)
38 2b7e_A PRE-mRNA processing pro 34.1 72 0.0025 20.6 4.5 48 91-147 3-55 (59)
39 1qqr_A Streptokinase domain B; 32.8 21 0.00071 27.1 1.9 32 77-108 33-64 (138)
40 2crj_A SWI/SNF-related matrix- 31.1 92 0.0032 21.1 5.1 41 95-146 20-60 (92)
41 3f27_D Transcription factor SO 31.0 86 0.0029 20.6 4.8 41 94-145 18-58 (83)
42 1wgf_A Upstream binding factor 29.2 76 0.0026 21.5 4.4 41 95-146 33-73 (90)
43 3nm9_A HMG-D, high mobility gr 29.1 1E+02 0.0034 19.8 4.8 39 94-146 15-53 (73)
44 1i11_A Transcription factor SO 27.7 77 0.0026 20.8 4.1 41 95-146 17-57 (81)
45 1hme_A High mobility group pro 27.7 1.2E+02 0.004 19.6 5.0 40 95-145 19-58 (77)
46 1hry_A Human SRY; DNA, DNA-bin 27.4 86 0.0029 20.2 4.2 41 94-145 16-56 (76)
47 1ckt_A High mobility group 1 p 26.7 1.2E+02 0.0042 19.0 4.9 41 96-145 15-55 (71)
48 2cs1_A PMS1 protein homolog 1; 26.1 86 0.003 21.2 4.2 41 95-146 20-60 (92)
49 1wz6_A HMG-box transcription f 25.6 94 0.0032 20.4 4.2 41 94-145 19-59 (82)
50 2e6o_A HMG box-containing prot 25.0 1E+02 0.0035 20.6 4.4 41 94-145 29-69 (87)
51 3u2b_C Transcription factor SO 24.5 1.1E+02 0.0039 19.7 4.5 41 94-145 14-54 (79)
52 2eqz_A High mobility group pro 23.0 1.2E+02 0.0043 20.1 4.5 42 95-145 28-69 (86)
53 1uzc_A Hypothetical protein FL 21.7 1.7E+02 0.0057 19.3 4.8 22 87-108 11-32 (71)
54 2d7l_A WD repeat and HMG-box D 21.2 97 0.0033 20.8 3.6 44 94-147 17-60 (81)
55 1gt0_D Transcription factor SO 20.8 94 0.0032 20.3 3.4 40 95-145 15-54 (80)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=141.65 Aligned_cols=74 Identities=38% Similarity=0.587 Sum_probs=67.1
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP 152 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~ 152 (217)
....|||+||||+++++.++||++|++|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD------PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC------TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 4568999999999999999999999999999999999763 4588999999999999999999999999986443
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-22 Score=142.63 Aligned_cols=74 Identities=38% Similarity=0.547 Sum_probs=67.1
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
....+||+||||+++++.++||++|++|+++||||+++.. .+.+.+.|+.|++||++|+||.+|+.||..+...
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4568999999999999999999999999999999998763 3568899999999999999999999999988643
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=140.28 Aligned_cols=72 Identities=38% Similarity=0.548 Sum_probs=66.1
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
....|||+||||+++++.++||++|++|++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 456899999999999999999999999999999999865 458899999999999999999999999988644
No 4
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.85 E-value=3.9e-22 Score=146.37 Aligned_cols=78 Identities=28% Similarity=0.458 Sum_probs=69.2
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV 150 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~ 150 (217)
....+||+||||+++++.++||++|++|+++||||+++....+...+.+.+.|++|++||+||+||.+|+.||..+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 346899999999999999999999999999999999985433344567899999999999999999999999998753
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.85 E-value=8.7e-22 Score=139.56 Aligned_cols=69 Identities=43% Similarity=0.617 Sum_probs=63.9
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
.|||+||||+++++.++||++|++|++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-------GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT-------THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 6899999999999999999999999999999998753 47899999999999999999999999987543
No 6
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.85 E-value=1.3e-21 Score=137.34 Aligned_cols=68 Identities=35% Similarity=0.642 Sum_probs=61.9
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
....+||+||||+++++.++||++|++|++++|||++++ +.+.|+.|++||++|+||.+|+.||.+|.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~---------~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---------GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---------CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC---------HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 356899999999999999999999999999999999865 25899999999999999999999999874
No 7
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.84 E-value=6.6e-22 Score=147.84 Aligned_cols=73 Identities=41% Similarity=0.658 Sum_probs=66.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCCc
Q 027925 75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNPM 153 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~~ 153 (217)
..|||+||||+++++.++||++||+|++++|||+++.. +.++++|++|++||+||+||.+|+.||..+.....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD------KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT------CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 36899999999999999999999999999999999763 45889999999999999999999999999875544
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2e-21 Score=141.27 Aligned_cols=71 Identities=39% Similarity=0.643 Sum_probs=65.4
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
...|||+||||+++++.++||++||+|+++||||+++. +.+.+.|++|++||++|+||.+|..||.++...
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-------PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 45899999999999999999999999999999999876 347899999999999999999999999988643
No 9
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-21 Score=147.01 Aligned_cols=70 Identities=36% Similarity=0.553 Sum_probs=65.2
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
...+||+||||+++++.++||++|++|++++|||+++.. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN------PEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 458999999999999999999999999999999999763 5689999999999999999999999999874
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=147.73 Aligned_cols=75 Identities=31% Similarity=0.341 Sum_probs=67.3
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP 152 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~ 152 (217)
....|||+||||+++++.++||+|||+|+++||||++++. +.+.++|++|++||+||+||.+|+.||..+....
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN------PKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC------STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 3468999999999999999999999999999999999863 4589999999999999999999999999875443
Q ss_pred c
Q 027925 153 M 153 (217)
Q Consensus 153 ~ 153 (217)
.
T Consensus 91 ~ 91 (112)
T 2ctq_A 91 S 91 (112)
T ss_dssp S
T ss_pred C
Confidence 3
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=142.11 Aligned_cols=75 Identities=37% Similarity=0.504 Sum_probs=67.5
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP 152 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~ 152 (217)
....|||+||||+++++.++||++|++|+++||||+++.. .+.++++|++|++||++|+||.+|+.||..+....
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW 80 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-----SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 3568999999999999999999999999999999998763 35789999999999999999999999999876443
No 12
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=142.99 Aligned_cols=71 Identities=34% Similarity=0.508 Sum_probs=65.3
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
....+||+||||+++++.++||++||+|+++||||+++.. +.+.++|++|++||+||+||.+|+.||..+.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS------AEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC------SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999763 5689999999999999999999999999764
No 13
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=140.35 Aligned_cols=70 Identities=43% Similarity=0.629 Sum_probs=64.9
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
....+||+||||+++++.++||++|++|++++|||+++. +.+.+.|++|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-------PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456899999999999999999999999999999999874 4688999999999999999999999999874
No 14
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.83 E-value=2.2e-21 Score=146.34 Aligned_cols=91 Identities=31% Similarity=0.430 Sum_probs=74.1
Q ss_pred CCCCCcchhccCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 73 ADEKSPYETLELERDA-DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~a-s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
....|||+||||++++ +.++||+|||+|++++|||++++ ....+.+.+.|++|++||++|+||.+|+.||..+...
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~---~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN---KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS---HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 3468999999999999 99999999999999999999875 1234678999999999999999999999999987532
Q ss_pred CccchhHHHHHHHHHhhhc
Q 027925 152 PMKASQAWMEWLIKKRKAF 170 (217)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~f 170 (217)
. ..|.+|+..++..|
T Consensus 89 ~----~~~~~~~~~~~~~~ 103 (109)
T 2qsa_A 89 D----QRFYNYYQYYRLRA 103 (109)
T ss_dssp T----CHHHHHHHHHHHC-
T ss_pred h----HHHHHHHHHHHHHh
Confidence 2 23555655555444
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-21 Score=143.41 Aligned_cols=71 Identities=42% Similarity=0.604 Sum_probs=64.5
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
.|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|+.|++||++|+||.+|+.||..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5899999999999999999999999999999998763 3568899999999999999999999999986533
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.2e-20 Score=138.29 Aligned_cols=67 Identities=36% Similarity=0.589 Sum_probs=62.1
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
...|||+||||+++++.++||++|++|++++|||+++.. .++|++|++||++|+||.+|+.||..+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---------TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 468999999999999999999999999999999998653 4699999999999999999999999863
No 17
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=155.23 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=68.0
Q ss_pred HHHhhhcCCC-CCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhH
Q 027925 64 RTVVSAANWA-DEKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEER 140 (217)
Q Consensus 64 ~~~~~~~~~~-~~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~ 140 (217)
|..+....+. ...|||+||||+++ ++.++||++||+|+++||||++++.+ ..++..+.++|+.|++||+||+||.+
T Consensus 30 C~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vLsdp~~ 108 (207)
T 3bvo_A 30 CPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRS-QTEKDFSEKHSTLVNDAYKTLLAPLS 108 (207)
T ss_dssp CTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred cccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 4444444433 36799999999986 79999999999999999999998752 22344578899999999999999999
Q ss_pred HHhhhcc
Q 027925 141 RRQYDMD 147 (217)
Q Consensus 141 R~~YD~~ 147 (217)
|+.||..
T Consensus 109 R~~Yd~~ 115 (207)
T 3bvo_A 109 RGLYLLK 115 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999954
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=148.65 Aligned_cols=76 Identities=30% Similarity=0.493 Sum_probs=68.2
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDN 148 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~ 148 (217)
....|||+||||+++++.++||+|||+|++++|||+++..+...+.+.+.+.|+.|++||+||+||.+|+.||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4468999999999999999999999999999999999876444445678899999999999999999999999864
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.78 E-value=7.2e-20 Score=150.91 Aligned_cols=70 Identities=33% Similarity=0.556 Sum_probs=64.7
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCC
Q 027925 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVN 151 (217)
Q Consensus 76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~ 151 (217)
.|||+||||+++|+.++||+|||+|++++|||++++. +.+.++|+.|++||++|+||.+|+.||.+|...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC------TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------hHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 5899999999999999999999999999999999763 458899999999999999999999999987643
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.77 E-value=9.2e-20 Score=148.34 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=64.0
Q ss_pred CCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 75 EKSPYETLELERDAD--EEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as--~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
..|||+||||+++++ .++||++||+|+++||||++++.+ ..+...+.+.|+.|++||+||+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATAS-ERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCc-HHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 579999999999887 999999999999999999998752 22234478999999999999999999999997643
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.76 E-value=5.6e-20 Score=139.99 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=66.7
Q ss_pred CCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCC--
Q 027925 75 EKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRV-- 150 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as~--~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~-- 150 (217)
..+||+||||+++++. ++||+|||+|++++|||++++ .++|++|++||+||+||.+|+.||.++..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----------~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~ 76 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 76 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----------TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----------HHHHHHHHHHHHHHCCHHHHHHhhhcccccc
Confidence 3689999999999998 999999999999999999765 37899999999999999999999976541
Q ss_pred ---CCccchhHHHHHHH
Q 027925 151 ---NPMKASQAWMEWLI 164 (217)
Q Consensus 151 ---~~~~~~~~~~~~~~ 164 (217)
.+..+...|.+|+.
T Consensus 77 ~~~~~~~g~p~w~~w~~ 93 (114)
T 1gh6_A 77 ATEIPTYGTDEWEQWWN 93 (114)
T ss_dssp CCCCCCCSSSCHHHHHH
T ss_pred cccCCCCCCchHHHHHh
Confidence 12223456777753
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=130.04 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=57.4
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHh
Q 027925 75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ 143 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 143 (217)
..|||+||||+++++.++||++||+|+++||||+++.. .+.++|++|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-------~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-------GSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCT-------THHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------cHHHHHHHHHHHHHHHCCcccccC
Confidence 58999999999999999999999999999999999763 478999999999999999998864
No 23
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.76 E-value=4.9e-20 Score=163.52 Aligned_cols=69 Identities=45% Similarity=0.659 Sum_probs=0.0
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
...|||+||||+++|+.++||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||+++.
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-------hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 35899999999999999999999999999999999875 3588999999999999999999999999854
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.75 E-value=2.3e-18 Score=139.75 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=63.8
Q ss_pred CcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 77 SPYETLELERDA--DEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 77 d~Y~iLgv~~~a--s~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
|||+||||++++ +..+||++||+|+++||||++++.+ ..+...+.++|+.|++||+||+||.+|+.||..+.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~-~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGS-QAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSC-HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999999 9999999999999999999998752 22334578899999999999999999999998754
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.71 E-value=5.1e-18 Score=121.06 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 75 EKSPYETLELERD--ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 75 ~~d~Y~iLgv~~~--as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
..++|+||||+++ ++.++||++||+|++++|||++++ .++|++|++||++|+|+.+|..++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----------~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3689999999999 999999999999999999999753 479999999999999999998854
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=1.5e-18 Score=126.28 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHh
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQ 143 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~ 143 (217)
....++|+||||+++++.++||+|||+|+++||||++++. .+.++++|++|++||++|+|...|..
T Consensus 13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-----~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-----HDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-----HHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3457899999999999999999999999999999998763 35689999999999999999877733
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.70 E-value=1e-18 Score=141.84 Aligned_cols=65 Identities=25% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCC
Q 027925 75 EKSPYETLELERDAD--EEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNR 149 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as--~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~ 149 (217)
..+||+||||+++|+ .++||+|||+|++++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 468999999999998 6999999999999999999865 2689999999999999999999999884
No 28
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.69 E-value=3.6e-18 Score=139.78 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=59.9
Q ss_pred CCCCCcchhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 73 ADEKSPYETL------ELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 73 ~~~~d~Y~iL------gv~~-~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
....|||+|| |+++ +++.++||++||+|+++||||++++ +.++|+.|++||+||+||.+|+.||
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------a~~~f~~i~~AY~vL~dp~~R~~Yd 78 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---------GSEQSSTLNQAYHTLKDPLRRSQYM 78 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---------CSSGGGSHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---------HHHHHHHHHHHHHHHcChHHHHHHH
Confidence 3468999999 4665 8999999999999999999999865 4578999999999999999999999
Q ss_pred ccC
Q 027925 146 MDN 148 (217)
Q Consensus 146 ~~~ 148 (217)
..+
T Consensus 79 ~~l 81 (181)
T 3uo3_A 79 LKL 81 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 29
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.67 E-value=1.2e-17 Score=125.44 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-CcccccHHHHHHHHHHHHHHHcCChh
Q 027925 74 DEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRG-TLEKGETAEAKFIKIQAAYELLIDEE 139 (217)
Q Consensus 74 ~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g-~~~~~~~a~~~f~~I~~AY~vLsdp~ 139 (217)
...+||+|||++. |+.++||+|||+|+++||||++++.| ++++...|+++|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3479999999996 99999999999999999999987643 23334568999999999999999985
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.66 E-value=1.8e-17 Score=135.39 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=59.7
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhh
Q 027925 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQY 144 (217)
Q Consensus 76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~Y 144 (217)
.++|+||||+++++.++||+|||+|+++||||++++.. ....++++|++|++||+||+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~---~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP---YEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCT---THHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcc---hHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 69999999999999999999999999999999997641 1124899999999999999999999987
No 31
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.7e-17 Score=112.88 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=51.2
Q ss_pred CCCcchhccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHH
Q 027925 75 EKSPYETLELER-DADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERR 141 (217)
Q Consensus 75 ~~d~Y~iLgv~~-~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R 141 (217)
..++|+||||++ +++.++||++||+|++++|||++++ .+.|++|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----------HHHHHHHHHHHHHHhhhhhc
Confidence 468999999999 7999999999999999999999633 46999999999999998655
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=8.6e-17 Score=117.82 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=52.2
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCC
Q 027925 76 KSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLID 137 (217)
Q Consensus 76 ~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsd 137 (217)
.++|++|||++.|+.++||+|||+++++||||++++.. ....++++|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~---~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP---YEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST---THHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch---hHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999997641 123588999999999999964
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.62 E-value=3.6e-17 Score=158.16 Aligned_cols=74 Identities=31% Similarity=0.527 Sum_probs=40.8
Q ss_pred CCCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhccCCCCC
Q 027925 73 ADEKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMDNRVNP 152 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~~~~~~ 152 (217)
....|||+||||+++|+.++||+|||+|+++||||++++. +.+.++|++|++||++|+||.+|+.||++|....
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~------~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC------hHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 4568999999999999999999999999999999998753 4588999999999999999999999999986443
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.11 E-value=3.7e-11 Score=105.47 Aligned_cols=70 Identities=40% Similarity=0.658 Sum_probs=57.5
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhcc
Q 027925 75 EKSPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD 147 (217)
Q Consensus 75 ~~d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 147 (217)
..++|.+||+.+.++.++|+++|+++++++|||+.+.. .+++.+++.|+.|++||++|+||++|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~---~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNE---EEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSH---HHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 45899999999999999999999999999999998653 12356899999999999999999999999974
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.92 E-value=8.3e-10 Score=75.52 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=46.8
Q ss_pred CCcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCCh
Q 027925 76 KSPYETLELERD---ADEEQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDE 138 (217)
Q Consensus 76 ~d~Y~iLgv~~~---as~~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp 138 (217)
...|.||||+++ ++.++|+++||+|...+|||+.+. .....+|++|+++|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----------~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----------FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHHHHH
Confidence 457899999999 999999999999999999999654 47888999999999643
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.69 E-value=0.2 Score=47.24 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHH
Q 027925 73 ADEKSPYETLELERDADE--EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYEL 134 (217)
Q Consensus 73 ~~~~d~Y~iLgv~~~as~--~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~v 134 (217)
....+||.+||++-+... .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------------HHHHHHHHHhccc
Confidence 334569999999776655 67999999999965443 4788889888876
No 37
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=36.48 E-value=57 Score=20.68 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
.+.+|..++.-||+.. ..+..+.|.+.+..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----------NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777788888864 4578889999999999776554333
No 38
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.10 E-value=72 Score=20.56 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHH---HHHHHHcCC-hh-HHHhhhcc
Q 027925 91 EQIKVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKI---QAAYELLID-EE-RRRQYDMD 147 (217)
Q Consensus 91 ~eIK~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I---~~AY~vLsd-p~-~R~~YD~~ 147 (217)
+|...+|.+|.+...=|..-. -++.++.| ..-|.+|.| |. ++++|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~ws---------weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS---------FSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC---------HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc---------HHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 567889999999885554433 56777777 358999997 76 56777764
No 39
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=32.83 E-value=21 Score=27.13 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=28.5
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 027925 77 SPYETLELERDADEEQIKVAYRRLAKFYHPDV 108 (217)
Q Consensus 77 d~Y~iLgv~~~as~~eIK~aYr~l~~~~HPDk 108 (217)
-++..|.|....+.+|++++-..+..++|||=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 45788888889999999999999999999994
No 40
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=31.11 E-value=92 Score=21.08 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 146 (217)
+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 20 NERREQIRTRHPDLP-----------FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHCTTCC-----------HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456667777888854 46788999999999998876655444
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=31.01 E-value=86 Score=20.58 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
...+|..++.-||+.. ..+..+.|.+.+..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----------NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556777888899864 4578889999999999776554433
No 42
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=29.24 E-value=76 Score=21.46 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 146 (217)
..+|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 33 ~~~r~~~k~~~P~~~-----------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 33 EEKRRQLQEERPELS-----------ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHTHHHHHHHCTTSC-----------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 445667777889854 46888999999999997766554443
No 43
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=29.08 E-value=1e+02 Score=19.79 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 146 (217)
-+.+|..++.-||+.. ..+..+.|.+.+..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-----------VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-----------HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 3456667778888864 46788999999999987 655543
No 44
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=27.73 E-value=77 Score=20.81 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 146 (217)
+.++..++.-||+.. ..+..+.|.+.+..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDMH-----------NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSCC-----------HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 445666777788753 45788899999999998776655444
No 45
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=27.73 E-value=1.2e+02 Score=19.58 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
...|..++.-||+.. ..+..+.|.+.+..|++.++....+
T Consensus 19 ~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS-----------IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHCTTCC-----------HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445666677788853 4678899999999999776554433
No 46
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=27.37 E-value=86 Score=20.20 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
.+.+|..++.-||+.... +..+.|.+.+..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~~-----------eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-----------EISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-----------HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-----------HHHHHHHhHHHhCCHHHHHHHHH
Confidence 345666677778986532 57788999999998666544333
No 47
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=26.67 E-value=1.2e+02 Score=19.04 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 96 AYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 96 aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
..|..++.-||+...+ ..+..+.|.+.+..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~---------~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN---------FSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCC---------HHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCc---------HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455566778886432 3578899999999999887655433
No 48
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.05 E-value=86 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhc
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDM 146 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~ 146 (217)
+..|..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS-----------LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHCCSSC-----------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445666777788864 45888999999999997766555444
No 49
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=25.63 E-value=94 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~-----------~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDN-----------RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHHCSSSCT-----------THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----------HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 34566777778898643 367888999999999766544433
No 50
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=24.96 E-value=1e+02 Score=20.59 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~-----------~~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-----------NRAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSC-----------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----------HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3456666777888853 4578889999999999776554333
No 51
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=24.51 E-value=1.1e+02 Score=19.69 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
.+.+|..++.-||+.. ..+..+.|.+.+..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-----------NAEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSC-----------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3456667777788754 4578889999999999666554333
No 52
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.01 E-value=1.2e+02 Score=20.05 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
...|..++.-||+...+ ..+..+.|.+.|..|++.++....+
T Consensus 28 ~~~r~~~k~~~p~~~~~---------~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN---------FAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHCTTSCCC---------HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc---------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44566667778986532 3578899999999999776555443
No 53
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.66 E-value=1.7e+02 Score=19.30 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 027925 87 DADEEQIKVAYRRLAKFYHPDV 108 (217)
Q Consensus 87 ~as~~eIK~aYr~l~~~~HPDk 108 (217)
-++.++.+.+|+.|...++=+-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~ 32 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPS 32 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHHHcCcCC
Confidence 4689999999999999886443
No 54
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=97 Score=20.76 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhhcc
Q 027925 94 KVAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYDMD 147 (217)
Q Consensus 94 K~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD~~ 147 (217)
-..+|..++.-||+.. + ..+..+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~-~---------~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D---------EADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S---------HHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc-h---------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777888899974 1 458889999999999977766655544
No 55
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=20.80 E-value=94 Score=20.27 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccHHHHHHHHHHHHHHHcCChhHHHhhh
Q 027925 95 VAYRRLAKFYHPDVYDGRGTLEKGETAEAKFIKIQAAYELLIDEERRRQYD 145 (217)
Q Consensus 95 ~aYr~l~~~~HPDk~~~~g~~~~~~~a~~~f~~I~~AY~vLsdp~~R~~YD 145 (217)
+.+|..++.-||+.. ..+..+.|.+.+..|++.++....+
T Consensus 15 ~~~r~~~~~~~p~~~-----------~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-----------NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHTTSTTSC-----------HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445666667788753 4578889999999998766554443
Done!