Query 027926
Match_columns 217
No_of_seqs 139 out of 1135
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 8.7E-61 1.9E-65 416.2 18.2 195 1-203 2-196 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 2.9E-60 6.3E-65 413.2 18.1 195 1-203 1-196 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 3E-59 6.4E-64 413.1 18.4 191 5-203 3-193 (289)
4 cd00691 ascorbate_peroxidase A 100.0 2.5E-56 5.4E-61 389.4 18.0 182 9-205 13-197 (253)
5 PLN03030 cationic peroxidase; 100.0 1.7E-54 3.7E-59 387.7 12.6 187 2-203 31-257 (324)
6 cd00693 secretory_peroxidase H 100.0 2.6E-53 5.7E-58 378.0 13.1 187 2-203 8-236 (298)
7 PF00141 peroxidase: Peroxidas 100.0 2.2E-52 4.7E-57 360.3 6.1 178 12-203 1-203 (230)
8 cd00692 ligninase Ligninase an 100.0 9.4E-49 2E-53 351.7 16.6 182 8-203 16-208 (328)
9 cd00314 plant_peroxidase_like 100.0 3.9E-47 8.5E-52 331.0 16.1 185 11-207 2-199 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.5E-47 3.3E-52 349.8 13.3 184 15-203 43-310 (409)
11 cd08201 plant_peroxidase_like_ 100.0 9.5E-48 2.1E-52 334.9 10.9 170 28-203 37-212 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 1.2E-44 2.5E-49 349.1 12.9 183 16-203 54-319 (716)
13 PRK15061 catalase/hydroperoxid 100.0 2.3E-43 4.9E-48 338.8 13.4 185 14-203 54-323 (726)
14 cd08200 catalase_peroxidase_2 100.0 1.9E-39 4.2E-44 286.1 15.3 179 13-204 13-224 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 3.2E-35 7E-40 283.8 16.1 184 12-208 430-641 (716)
16 PRK15061 catalase/hydroperoxid 100.0 5.5E-34 1.2E-38 274.2 15.9 182 14-208 439-653 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.6E-32 3.4E-37 255.0 10.7 183 15-202 68-334 (730)
18 COG0376 KatG Catalase (peroxid 99.6 2.7E-15 5.9E-20 140.6 8.4 184 14-209 449-658 (730)
19 PRK12346 transaldolase A; Prov 35.5 36 0.00078 31.1 3.0 85 77-164 138-240 (316)
20 cd00957 Transaldolase_TalAB Tr 32.3 43 0.00093 30.5 2.9 84 77-163 137-238 (313)
21 PTZ00411 transaldolase-like pr 31.5 52 0.0011 30.2 3.4 56 108-164 180-251 (333)
22 PRK12309 transaldolase/EF-hand 31.5 49 0.0011 31.0 3.2 56 108-164 174-245 (391)
23 PF10937 DUF2638: Protein of u 26.6 59 0.0013 25.2 2.4 30 130-160 79-108 (112)
24 COG4982 3-oxoacyl-[acyl-carrie 26.3 14 0.00031 37.0 -1.3 57 129-203 693-749 (866)
25 TIGR00874 talAB transaldolase. 24.9 79 0.0017 28.9 3.3 56 107-163 167-238 (317)
26 PRK05269 transaldolase B; Prov 24.4 43 0.00092 30.5 1.5 58 107-165 169-242 (318)
27 PF09533 DUF2380: Predicted li 24.0 40 0.00087 28.5 1.1 33 138-171 107-139 (188)
28 KOG0400 40S ribosomal protein 23.3 33 0.00072 27.6 0.5 35 136-171 31-66 (151)
29 PRK13267 archaemetzincin-like 22.9 32 0.00068 28.7 0.3 45 154-209 127-171 (179)
30 cd00439 Transaldolase Transald 22.2 34 0.00073 30.0 0.4 86 76-164 127-230 (252)
31 COG1913 Predicted Zn-dependent 21.9 21 0.00045 30.1 -1.0 18 154-172 126-143 (181)
32 PF13878 zf-C2H2_3: zinc-finge 21.4 45 0.00097 21.0 0.7 13 202-214 14-26 (41)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=8.7e-61 Score=416.18 Aligned_cols=195 Identities=67% Similarity=1.103 Sum_probs=189.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCChHHhhccccCcchHHHHh
Q 027926 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (217)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~~~E~~~~~N~gl~~~~~~ 80 (217)
|.|.||.+.+.++++|+++|++|.+++.++.++|.+|||+||||+|||...+.||+||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhCCCCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHcCCChhhHHHhh
Q 027926 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (217)
Q Consensus 81 i~~iK~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~ 160 (217)
|++||+++++|||||||+||+++||+.+|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+++|||||+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F-~~~Gl~~~dlVALs 160 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVF-GRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999988999999999999999999 99999999999999
Q ss_pred cchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 161 GGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 161 GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
||||||++||. ++||. |+||.||.+|||+||+++..
T Consensus 161 GaHTiG~ah~~---r~g~~----g~~d~tp~~FDN~Yy~~ll~ 196 (251)
T PLN02879 161 GGHTLGRCHKE---RSGFE----GAWTPNPLIFDNSYFKEILS 196 (251)
T ss_pred ccccccccccc---cccCC----CCCCCCccceeHHHHHHHHc
Confidence 99999999998 78887 78999999999999999865
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.9e-60 Score=413.21 Aligned_cols=195 Identities=70% Similarity=1.136 Sum_probs=188.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCChHHhhccccCcchHHHHh
Q 027926 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (217)
Q Consensus 1 ~~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~~~E~~~~~N~gl~~~~~~ 80 (217)
|.|.||.+.+.+++++++++++|++++.++.++|.+|||+||||++||.....|||||||++.+|+++++|.||++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHHHhhCCCCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-cCCChhhHHHh
Q 027926 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQ-MGLSDKDIVAL 159 (217)
Q Consensus 81 i~~iK~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~-~Gl~~~e~VAL 159 (217)
|++||+++++|||||||+||||+||+++|||.|+|++||+|+.++.++++||.|+.+++++++.| +. +|||++|||||
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F-~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVF-AKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHH-HHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999988889999999999999999 75 69999999999
Q ss_pred hcchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 160 SGGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 160 ~GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
+||||||++||. ++||. ++|+.||.+|||+||+++..
T Consensus 160 sGaHTiG~~hc~---r~~~~----g~~~~tp~~fDn~Yy~~ll~ 196 (250)
T PLN02364 160 SGAHTLGRCHKD---RSGFE----GAWTSNPLIFDNSYFKELLS 196 (250)
T ss_pred ecceeeccccCC---CCCCC----CCCCCCCCccchHHHHHHhc
Confidence 999999999997 77887 78999999999999999864
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3e-59 Score=413.05 Aligned_cols=191 Identities=61% Similarity=0.970 Sum_probs=184.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCChHHhhccccCcchHHHHhHHHH
Q 027926 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (217)
Q Consensus 5 cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (217)
.|.++..|..+|+++|++|+++++++.++|.+|||+||||++||.+.+.|||||||++.+|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HhhCCCCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHcCCChhhHHHhhcchh
Q 027926 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHT 164 (217)
Q Consensus 85 K~~~p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~GaHT 164 (217)
|+++|+|||||||+||||+||+++|||.|+|++||+|+.+++++++||.|+.+++++++.| +++||+++|||||+||||
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F-~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVF-YRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHH-HHcCCCHHHHhhhccccc
Confidence 9999999999999999999999999999999999999999988889999999999999999 999999999999999999
Q ss_pred hhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 165 LVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 165 iG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
||++||. +.||. ++|+.||.+|||+||+++..
T Consensus 162 iG~ahc~---r~g~~----g~~~~Tp~~FDN~Yy~~ll~ 193 (289)
T PLN02608 162 LGRAHPE---RSGFD----GPWTKEPLKFDNSYFVELLK 193 (289)
T ss_pred ccccccc---CCCCC----CCCCCCCCccChHHHHHHHc
Confidence 9999998 77887 78999999999999999854
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.5e-56 Score=389.43 Aligned_cols=182 Identities=53% Similarity=0.879 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCChHHhhccccCcchHHHHhHHHHHhhC
Q 027926 9 SEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF 88 (217)
Q Consensus 9 ~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~ 88 (217)
+++|+++|+++ +. ++.++|.+|||+||||++||++.+.||+||++++.+|+++++|.+|++++++|++||+++
T Consensus 13 ~~~V~~~v~~~------~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 13 LEAARNDIAKL------ID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHH------HH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc
Confidence 45666666555 44 999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCChHHHHHHHHHHcCCChhhHHHhhcchhh
Q 027926 89 PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165 (217)
Q Consensus 89 p~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~GaHTi 165 (217)
|+|||||||+|||++||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.| +++||+++|||||+|||||
T Consensus 86 ~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~d~VaLsGaHTi 164 (253)
T cd00691 86 PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVF-YRMGFNDQEIVALSGAHTL 164 (253)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHH-HhcCCCHHHHHHhccccee
Confidence 99999999999999999999999999999999999885 6778999999999999999 9999999999999999999
Q ss_pred hhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCC
Q 027926 166 VSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCL 205 (217)
Q Consensus 166 G~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~ 205 (217)
|++||. ..+|. ++|+.||.+|||+||+++..=.
T Consensus 165 G~a~c~---~~~~~----g~~~~tp~~FDn~Yy~~ll~~~ 197 (253)
T cd00691 165 GRCHKE---RSGYD----GPWTKNPLKFDNSYFKELLEED 197 (253)
T ss_pred eccccc---CCCCC----CCCCCCCCcccHHHHHHHhcCC
Confidence 999997 55666 7889999999999999987643
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.7e-54 Score=387.67 Aligned_cols=187 Identities=25% Similarity=0.289 Sum_probs=162.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCC---hHHhhccccCcchHHH
Q 027926 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL---AAEQAHSANNGLDIAV 78 (217)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~---~~E~~~~~N~gl~~~~ 78 (217)
+++||++|++|+++|+++ +.+|+.++|++|||+|||||+ +||||||++ .+|+++++|.+| ++|
T Consensus 31 ~~sCP~aE~iV~~~v~~~------~~~d~~~aa~llRL~FHDCfv-------~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 31 STTCPQAESIVRKTVQSH------FQSNPAIAPGLLRMHFHDCFV-------RGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred hCcCCCHHHHHHHHHHHH------HhhCcccchhhhhhhhhhhee-------cCCceEEeeCCCcccccCCCCcCc-chH
Confidence 579999999999999999 999999999999999999998 778888776 369999999988 799
Q ss_pred HhHHHHHhhC----C-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCChHHHHHHHHHHcCC
Q 027926 79 RLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGNDHLRQVFGAQMGL 151 (217)
Q Consensus 79 ~~i~~iK~~~----p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s--~~~~~lP~p~~~~~~l~~~F~~~~Gl 151 (217)
++|+.||+++ | +|||||||+||||+||+++|||.|+|++||+|+.++ .+.++||.|+.+++++++.| +++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F-~~~Gl 175 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKF-AAKGL 175 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHH-HHcCC
Confidence 9999999886 6 899999999999999999999999999999999887 33458999999999999999 99999
Q ss_pred ChhhHHHhhcchhhhhhcccCccCCCC--CCC-----------------------CC----CCCC-CCCCCcchHHHHhh
Q 027926 152 SDKDIVALSGGHTLVSAKLEGATRRGL--DLR-----------------------DH----GPAT-LSFLTIPTSRMCHW 201 (217)
Q Consensus 152 ~~~e~VAL~GaHTiG~~h~~~~~~~g~--~~~-----------------------~~----g~~~-~tp~~fDN~Yy~~~ 201 (217)
+.+|||+|+||||||++||..+...=| .+. +. .++| .||.+|||+||+++
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 999999999999999999986532111 100 00 1233 58999999999986
Q ss_pred hc
Q 027926 202 SL 203 (217)
Q Consensus 202 ~~ 203 (217)
..
T Consensus 256 l~ 257 (324)
T PLN03030 256 KN 257 (324)
T ss_pred Hh
Confidence 53
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.6e-53 Score=378.02 Aligned_cols=187 Identities=26% Similarity=0.326 Sum_probs=164.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCC------hHHhhccccCcch
Q 027926 2 TKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL------AAEQAHSANNGLD 75 (217)
Q Consensus 2 ~~~cp~~~~~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~------~~E~~~~~N~gl~ 75 (217)
+++||++|++|+++|+++ +..++.++|++|||+|||||+ +||||||++ .+|+++++|.++
T Consensus 8 ~~sCP~~e~iV~~~v~~~------~~~~~~~a~~~lRl~FHDc~v-------~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 8 SKSCPNAESIVRSVVRAA------VKADPRLAAALLRLHFHDCFV-------RGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred cCCCCChHHHHHHHHHHH------HHhCCCcCchhhhhhhHhhhc-------cCcceeEEecCCCCCchhccCCCCCCc-
Confidence 579999999999999998 899999999999999999997 788888875 469999999998
Q ss_pred HHHHhHHHHHhhC----C-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHH
Q 027926 76 IAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAKQGNDHLRQVFGAQ 148 (217)
Q Consensus 76 ~~~~~i~~iK~~~----p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~ 148 (217)
+++++|++||+++ | +|||||||+||||+||+++|||.|+|++||+|+..+. +.++||.|+.+++++++.| ++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~ 152 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLF-AS 152 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHH-HH
Confidence 7999999999876 5 8999999999999999999999999999999998763 3368999999999999999 99
Q ss_pred cCCChhhHHHhhcchhhhhhcccCccCC--CCCCC--------------------------CCCCCC-CCCCCcchHHHH
Q 027926 149 MGLSDKDIVALSGGHTLVSAKLEGATRR--GLDLR--------------------------DHGPAT-LSFLTIPTSRMC 199 (217)
Q Consensus 149 ~Gl~~~e~VAL~GaHTiG~~h~~~~~~~--g~~~~--------------------------~~g~~~-~tp~~fDN~Yy~ 199 (217)
+||+++|||||+||||||++||..+... +|.++ ...++| .||.+|||+||+
T Consensus 153 ~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 232 (298)
T cd00693 153 KGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYK 232 (298)
T ss_pred cCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHH
Confidence 9999999999999999999999865332 22110 112445 689999999999
Q ss_pred hhhc
Q 027926 200 HWSL 203 (217)
Q Consensus 200 ~~~~ 203 (217)
++..
T Consensus 233 ~l~~ 236 (298)
T cd00693 233 NLLA 236 (298)
T ss_pred HHHh
Confidence 8754
No 7
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.2e-52 Score=360.25 Aligned_cols=178 Identities=32% Similarity=0.484 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCC-hHHhhccccCcchHHHHhHHHHHhhC--
Q 027926 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF-- 88 (217)
Q Consensus 12 v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~-~~E~~~~~N~gl~~~~~~i~~iK~~~-- 88 (217)
||++|+++ +..++.++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|++||+++
T Consensus 1 Vr~~v~~~------~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~ 68 (230)
T PF00141_consen 1 VRSDVRAA------FKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEA 68 (230)
T ss_dssp HHHHHHHH------HHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHH------HHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcc
Confidence 67777777 7779999999999999999988 999999975 88999999999988999999999987
Q ss_pred --C-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHHHHcCCChhhHHHhhcch
Q 027926 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGH 163 (217)
Q Consensus 89 --p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~GaH 163 (217)
| +|||||||+||+++||+.+|||.|+|++||+|+..+.+.+ +||.|+.+++++++.| +++|||++|||||+|||
T Consensus 69 ~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F-~~~Gls~~e~VaLsGaH 147 (230)
T PF00141_consen 69 ACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFF-ARKGLSAEEMVALSGAH 147 (230)
T ss_dssp HSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHH-HHTT--HHHHHHHHGGG
T ss_pred cccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhh-hccccchhhhcceeccc
Confidence 4 6999999999999999999999999999999999996543 5999999999999999 99999999999999999
Q ss_pred hhhhhcccCcc----------CCCCCC-------CCCCCCCCCCCCcchHHHHhhhc
Q 027926 164 TLVSAKLEGAT----------RRGLDL-------RDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 164 TiG~~h~~~~~----------~~g~~~-------~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
|||++||..+. +++|.. ++..+++ ||.+|||+||+++..
T Consensus 148 TiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~ 203 (230)
T PF00141_consen 148 TIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLN 203 (230)
T ss_dssp GSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHH
T ss_pred ccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhc
Confidence 99999998544 111210 0112456 999999999998764
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9.4e-49 Score=351.66 Aligned_cols=182 Identities=29% Similarity=0.433 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcCCc---HHHHHHHHhhhcccccC-----CCCCCCCCCccCCh--HHhhccccCcchHH
Q 027926 8 VSEDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDV-----KTKTGGPFGTMRLA--AEQAHSANNGLDIA 77 (217)
Q Consensus 8 ~~~~v~~~v~~~~~~l~~~~~~~~~---a~~~lRl~FHDc~~~D~-----s~~~gG~dGsi~~~--~E~~~~~N~gl~~~ 77 (217)
+|..|++.+++. +..+..+ ++.+|||+||||++||. ..+.|||||||++. .|+++++|.||+..
T Consensus 16 ~~~~v~~dl~~~------~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~v 89 (328)
T cd00692 16 VWFDILDDIQGN------LFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEI 89 (328)
T ss_pred chHHHHHHHHHH------HhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHH
Confidence 566666666655 5556555 55699999999999994 56789999999863 59999999999888
Q ss_pred HHhHHHHHhhCCCCcHHHHHHHHhHHHhh-hCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHcCCChhhH
Q 027926 78 VRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDI 156 (217)
Q Consensus 78 ~~~i~~iK~~~p~VS~ADiialaa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~ 156 (217)
++.|++++++++ |||||||+|||++||+ .+|||.|+|++||+|+..+.++++||.|+.+++++++.| +++||+++||
T Consensus 90 vd~lk~~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F-~~~Gf~~~E~ 167 (328)
T cd00692 90 VEALRPFHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARF-ADAGFSPDEL 167 (328)
T ss_pred HHHHHHHHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHH-HHcCCCHHHH
Confidence 888888888886 9999999999999999 569999999999999999999999999999999999999 9999999999
Q ss_pred HHhhcchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 157 VALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 157 VAL~GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
|||+||||||++|.. ++++. +.+||.||.+|||+||+++.+
T Consensus 168 VaLsGAHTiG~a~~~---Dps~~---g~p~D~TP~~FDn~Yf~~ll~ 208 (328)
T cd00692 168 VALLAAHSVAAQDFV---DPSIA---GTPFDSTPGVFDTQFFIETLL 208 (328)
T ss_pred hhhcccccccccCCC---CCCCC---CCCCCCCcchhcHHHHHHHHH
Confidence 999999999999976 55554 258999999999999999764
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.9e-47 Score=331.02 Aligned_cols=185 Identities=39% Similarity=0.537 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCC-CCCCCCCccCChHHhhccccCcchHHHHhHHHHHhhCC
Q 027926 11 DYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89 (217)
Q Consensus 11 ~v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~-~~gG~dGsi~~~~E~~~~~N~gl~~~~~~i~~iK~~~p 89 (217)
.|++.|++. +.+++.+++.+|||+||||++++.+. ..|||||||++.+|+++++|.||.+++++|++||++++
T Consensus 2 ~v~~~l~~~------~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDL------ITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHH------HHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcC
Confidence 466666666 66688999999999999999999877 78999999999999999999999899999999999995
Q ss_pred ---CCcHHHHHHHHhHHHhhhC--CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCChHHHHHHHHHHcCCChhhHHHh
Q 027926 90 ---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVAL 159 (217)
Q Consensus 90 ---~VS~ADiialaa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL 159 (217)
+|||||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.+..+++++++.| +++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKF-KRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHH-HHcCCCHHHHHhh
Confidence 7999999999999999999 999999999999998 4567788999999999999999 8999999999999
Q ss_pred h-cchhh-hhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCCcc
Q 027926 160 S-GGHTL-VSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCLTC 207 (217)
Q Consensus 160 ~-GaHTi-G~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~~~ 207 (217)
+ |+||| |++||..+.... ..+|+.||.+|||+||+++..=...
T Consensus 155 ~~GaHti~G~~~~~~~~~~~-----~~~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 155 SAGAHTLGGKNHGDLLNYEG-----SGLWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred ccCCeeccCcccCCCCCccc-----CCCCCCCCCccchHHHHHHhcCCcc
Confidence 9 99999 999999332221 1588999999999999998875533
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.5e-47 Score=349.76 Aligned_cols=184 Identities=36% Similarity=0.558 Sum_probs=166.9
Q ss_pred HHHHHHHHhhhhhhcC---------CcHHHHHHHHhhhcccccCCCCCCCCC-CccCChHHhhccccCcchHHHHhHHHH
Q 027926 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (217)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~~~D~s~~~gG~d-Gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (217)
.++++|++|++++.+. .++|.+|||+||+++|||.+.++||+| |+|+|.+|.+++.|.||++++++|++|
T Consensus 43 d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a~~~L~pi 122 (409)
T cd00649 43 DLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKARRLLWPI 122 (409)
T ss_pred cHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHHHHHHHHH
Confidence 3788899999998865 699999999999999999999999997 799999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCC-------------------------------------
Q 027926 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------------- 126 (217)
Q Consensus 85 K~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~------------------------------------- 126 (217)
|+++| .||+||+|+||+++|||.+|||.|+|.+||.|+..+.
T Consensus 123 k~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~mgliyv 202 (409)
T cd00649 123 KQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQMGLIYV 202 (409)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhcccccc
Confidence 99997 7999999999999999999999999999999996431
Q ss_pred -CCC--CCCCCCCChHHHHHHHHHHcCCChhhHHHh-hcchhhhhhcccCc-----------------------------
Q 027926 127 -QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKLEGA----------------------------- 173 (217)
Q Consensus 127 -~~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL-~GaHTiG~~h~~~~----------------------------- 173 (217)
|++ .||+|..++.+|++.| .+||||++||||| +||||||++||..+
T Consensus 203 ~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~Cp~g~g 281 (409)
T cd00649 203 NPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSYGTGKG 281 (409)
T ss_pred CCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccCCCCCC
Confidence 333 6999999999999999 9999999999999 59999999999632
Q ss_pred ---cCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 174 ---TRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 174 ---~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
..+|++ ++|+.+|.+|||+||+++..
T Consensus 282 ~~t~~sglD----G~Wt~tP~~FDN~YF~nLl~ 310 (409)
T cd00649 282 KDTITSGLE----GAWTPTPTKWDNNYLKNLFG 310 (409)
T ss_pred CCCccccCC----CCCCCCcchhhHHHHHHHHh
Confidence 123555 79999999999999998764
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=9.5e-48 Score=334.91 Aligned_cols=170 Identities=26% Similarity=0.367 Sum_probs=147.2
Q ss_pred hcCCcHHHHHHHHhhhcccccCCCCCCCCCCccCChHHhhccccCcch--HHHHhHHHHHhhCCCCcHHHHHHHHhHHHh
Q 027926 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGV 105 (217)
Q Consensus 28 ~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGsi~~~~E~~~~~N~gl~--~~~~~i~~iK~~~p~VS~ADiialaa~~av 105 (217)
.++..++.+|||+||||++||...+.|||||||++ |..++||.|+. ..++.++.|+. ++||||||||||+++||
T Consensus 37 ~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV 112 (264)
T cd08201 37 PGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSV 112 (264)
T ss_pred CCccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHH
Confidence 36678999999999999999999999999999998 67788998875 34555555533 48999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHcCCChhhHHHhhc-chhhhhhcccCc---cCCCCCCC
Q 027926 106 EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSG-GHTLVSAKLEGA---TRRGLDLR 181 (217)
Q Consensus 106 ~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~G-aHTiG~~h~~~~---~~~g~~~~ 181 (217)
+.+|||.|+|++||+|++.+.+.+ ||.|+.+++++++.| +++||+++|||+|+| |||||++||..+ ..+++...
T Consensus 113 ~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~ 190 (264)
T cd08201 113 ASCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPD 190 (264)
T ss_pred HHcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccC
Confidence 999999999999999999998776 999999999999999 999999999999995 999999999853 22344322
Q ss_pred CCCCCCCCCCCcchHHHHhhhc
Q 027926 182 DHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 182 ~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
++.||++||.+|||+||.++..
T Consensus 191 ~~~p~dstp~~FDn~~f~E~l~ 212 (264)
T cd08201 191 TVLQFFDTTIQFDNKVVTEYLS 212 (264)
T ss_pred CCCCCCCCccccchHHHHHHhc
Confidence 2459999999999999998653
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.2e-44 Score=349.06 Aligned_cols=183 Identities=34% Similarity=0.517 Sum_probs=165.0
Q ss_pred HHHHHHHhhhhhhcC---------CcHHHHHHHHhhhcccccCCCCCCCCC-CccCChHHhhccccCcchHHHHhHHHHH
Q 027926 16 VEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFK 85 (217)
Q Consensus 16 v~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~~~D~s~~~gG~d-Gsi~~~~E~~~~~N~gl~~~~~~i~~iK 85 (217)
++++|++|++++.+. .++|.+|||+||+++||+.+.++||++ |+|+|.+|.+|+.|.+|.+++++|++||
T Consensus 54 ~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~~lL~pIk 133 (716)
T TIGR00198 54 LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKARRLLWPIK 133 (716)
T ss_pred HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHHHHHHHHH
Confidence 777899999998875 699999999999999999999999986 7999999999999999999999999999
Q ss_pred hhCC-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCC-------------------------------------C
Q 027926 86 EQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-------------------------------------Q 127 (217)
Q Consensus 86 ~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------------------~ 127 (217)
++|| +|||||||+||+++|||.+|||.|+|.+||+|+..+. +
T Consensus 134 ~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gliyvnp 213 (716)
T TIGR00198 134 KKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGLIYVNP 213 (716)
T ss_pred HHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccccccCc
Confidence 9998 8999999999999999999999999999999994321 2
Q ss_pred CC--CCCCCCCChHHHHHHHHHHcCCChhhHHHhh-cchhhhhhcccCcc------------------------------
Q 027926 128 EG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEGAT------------------------------ 174 (217)
Q Consensus 128 ~~--~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~-GaHTiG~~h~~~~~------------------------------ 174 (217)
++ .+|.|..++.+|++.| .+||||++|||||+ ||||||++||..+.
T Consensus 214 eg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~~g~g~d 292 (716)
T TIGR00198 214 EGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYGKGVGRD 292 (716)
T ss_pred ccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCCCCCCCC
Confidence 22 6899999999999999 99999999999995 99999999997422
Q ss_pred --CCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 175 --RRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 175 --~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
.+|++ |+|+.||.+|||+||+++..
T Consensus 293 t~~sglD----G~wT~TP~~FDN~YF~nLl~ 319 (716)
T TIGR00198 293 TMTSGLE----VAWTTTPTQWDNGYFYMLFN 319 (716)
T ss_pred cccccCC----CCCCCCCCccchHHHHHHhc
Confidence 23344 89999999999999999764
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.3e-43 Score=338.84 Aligned_cols=185 Identities=35% Similarity=0.538 Sum_probs=165.4
Q ss_pred HHHHHHHHHhhhhhhcC---------CcHHHHHHHHhhhcccccCCCCCCCCC-CccCChHHhhccccCcchHHHHhHHH
Q 027926 14 KAVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEP 83 (217)
Q Consensus 14 ~~v~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~~~D~s~~~gG~d-Gsi~~~~E~~~~~N~gl~~~~~~i~~ 83 (217)
-.++++|++|++++.++ .++|.+|||+||+++|||.+.++||++ |+|+|.+|.+++.|.||++++++|++
T Consensus 54 ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~~~L~p 133 (726)
T PRK15061 54 LDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKARRLLWP 133 (726)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHHHHHHH
Confidence 34788899999998875 689999999999999999999999997 79999999999999999999999999
Q ss_pred HHhhCC-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCC-----------------------------------
Q 027926 84 FKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------------------------------- 127 (217)
Q Consensus 84 iK~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~----------------------------------- 127 (217)
||++|| .||+||+|+||+.+|||.+|||.|+|.+||.|...+..
T Consensus 134 ik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~mgli 213 (726)
T PRK15061 134 IKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQMGLI 213 (726)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhhccce
Confidence 999997 89999999999999999999999999999999864311
Q ss_pred ----C--CCCCCCCCChHHHHHHHHHHcCCChhhHHHhh-cchhhhhhcccCc---------------------------
Q 027926 128 ----E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEGA--------------------------- 173 (217)
Q Consensus 128 ----~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~-GaHTiG~~h~~~~--------------------------- 173 (217)
+ ..+|+|..+..+|++.| .+||||++|||||+ ||||||++||..+
T Consensus 214 yvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~~c~~g 292 (726)
T PRK15061 214 YVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKNSYGSG 292 (726)
T ss_pred ecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccccCCCC
Confidence 1 12799999999999999 99999999999995 9999999999632
Q ss_pred -----cCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 174 -----TRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 174 -----~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
+.+|++ |+|+.||.+|||+||+++..
T Consensus 293 ~g~dt~tsGld----G~Wt~tPt~fDN~YF~nLl~ 323 (726)
T PRK15061 293 KGADTITSGLE----GAWTTTPTQWDNGYFENLFG 323 (726)
T ss_pred CCCCCccccCC----CCCCCCcchhhHHHHHHHhh
Confidence 123455 79999999999999998754
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.9e-39 Score=286.11 Aligned_cols=179 Identities=25% Similarity=0.340 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCc-cCChHHhhccccCc--chHHHHhHHHHHhhCC
Q 027926 13 KKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP 89 (217)
Q Consensus 13 ~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGs-i~~~~E~~~~~N~g--l~~~~~~i~~iK~~~p 89 (217)
.+.|++.|++| +....+.+.+|||+||++.|||.+.++||+||. |+|.+|++|+.|.+ |.+++++|++||+++|
T Consensus 13 ~~di~~lk~~i---~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 13 DADIAALKAKI---LASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHHHH---HhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHHHHHHHHHHhc
Confidence 34566666664 556679999999999999999999999999986 99999999999999 9999999999999997
Q ss_pred -------CCcHHHHHHHHhHHHhhhCCC-----CCCCCCCCCCCCCCCCC--C---CCCCCCCC------------ChHH
Q 027926 90 -------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPPQ--E---GRLPDAKQ------------GNDH 140 (217)
Q Consensus 90 -------~VS~ADiialaa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~~------------~~~~ 140 (217)
.||+||+|+||+.+|||.+|| |.|+|.+||.|+..+.. + ..+|.+.. ..+.
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 799999999999999999999 99999999999987531 1 24464432 3468
Q ss_pred HHHHHHHHcCCChhhHHHhhcch-hhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcC
Q 027926 141 LRQVFGAQMGLSDKDIVALSGGH-TLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLC 204 (217)
Q Consensus 141 l~~~F~~~~Gl~~~e~VAL~GaH-TiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~ 204 (217)
|++.| .++|||++|||||+||| ++|+.|. +++ . |+||.+|++|||+||+++..=
T Consensus 170 Lrd~f-~rlglsd~EmvaL~Gg~r~lG~~~~----~s~-~----G~wT~~p~~f~N~fF~nLLd~ 224 (297)
T cd08200 170 LVDKA-QLLTLTAPEMTVLVGGLRVLGANYG----GSK-H----GVFTDRPGVLTNDFFVNLLDM 224 (297)
T ss_pred HHHHH-HhCCCChHHHhheecchhhcccCCC----CCC-C----CCCcCCCCccccHHHHHHhcc
Confidence 99999 99999999999999998 6887774 333 3 899999999999999998653
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.2e-35 Score=283.77 Aligned_cols=184 Identities=23% Similarity=0.312 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCc-cCChHHhhcccc--CcchHHHHhHHHHHhhC
Q 027926 12 YKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF 88 (217)
Q Consensus 12 v~~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGs-i~~~~E~~~~~N--~gl~~~~~~i~~iK~~~ 88 (217)
|++.|...|.+| +...-..+.+||++||++.|||.+.++||+||. |++.+|++++.| .||.+++++|++||+++
T Consensus 430 v~~di~~lk~~i---~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQI---LASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHHH---HhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 366666666553 566778999999999999999999999999995 999999999999 89999999999999999
Q ss_pred C--CCcHHHHHHHHhHHHhhhC---CCC--CCCCCCCCCCCCCCC--CCCCCC---CC------------CCChHHHHHH
Q 027926 89 P--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QEGRLP---DA------------KQGNDHLRQV 144 (217)
Q Consensus 89 p--~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP---~p------------~~~~~~l~~~ 144 (217)
| .||+||+|+||+.+|||.+ ||| .|+|.+||.|+.... ++...| .+ ......|++.
T Consensus 507 ~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~ 586 (716)
T TIGR00198 507 AKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDK 586 (716)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHH
Confidence 8 8999999999999999998 897 589999999998752 332222 11 1234668999
Q ss_pred HHHHcCCChhhHHHhhcch-hhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCCccc
Q 027926 145 FGAQMGLSDKDIVALSGGH-TLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCLTCS 208 (217)
Q Consensus 145 F~~~~Gl~~~e~VAL~GaH-TiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~~~~ 208 (217)
| .++|||++|||||+||| ++|+.|.. + +. |+||.+|.+|||+||+++..=++=|
T Consensus 587 a-~~lglt~~EmvaL~Gg~r~lG~~~~~----s-~~----G~~T~~p~~f~NdfF~~LLd~~~~w 641 (716)
T TIGR00198 587 A-QLLTLTAPEMTVLIGGMRVLGANHGG----S-KH----GVFTDRVGVLSNDFFVNLLDMAYEW 641 (716)
T ss_pred H-HhCCCChHHHHheecchhhccccCCC----C-CC----CCCcCCCCccccHHHHHHhcCCcee
Confidence 9 99999999999999995 99998864 2 23 8999999999999999987654444
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=5.5e-34 Score=274.24 Aligned_cols=182 Identities=26% Similarity=0.327 Sum_probs=153.8
Q ss_pred HHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCCc-cCChHHhhccccC--cchHHHHhHHHHHhhC--
Q 027926 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-- 88 (217)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dGs-i~~~~E~~~~~N~--gl~~~~~~i~~iK~~~-- 88 (217)
+.|...|.+| +...-..+.+||++||++.|||.+.++||+||. |++.+|++++.|. +|.+++++|++||+++
T Consensus 439 ~di~~lk~~i---~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 439 ADIAALKAKI---LASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHHH---HhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 4555555554 555668999999999999999999999999985 9999999999999 9999999999999998
Q ss_pred -----CCCcHHHHHHHHhHHHhhhC---CC--CCCCCCCCCCCCCCCC--CC---CCCCCCC------------CChHHH
Q 027926 89 -----PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPP--QE---GRLPDAK------------QGNDHL 141 (217)
Q Consensus 89 -----p~VS~ADiialaa~~av~~~---GG--P~~~v~~GR~D~~~s~--~~---~~lP~p~------------~~~~~l 141 (217)
|.||+||+|+||+.+|||.+ || |.|+|.+||.|+.... ++ .++|.+. .....|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 68999999999999999998 57 9999999999998762 22 2457643 133789
Q ss_pred HHHHHHHcCCChhhHHHhhcch-hhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCCccc
Q 027926 142 RQVFGAQMGLSDKDIVALSGGH-TLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCLTCS 208 (217)
Q Consensus 142 ~~~F~~~~Gl~~~e~VAL~GaH-TiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~~~~ 208 (217)
++.| .++|||++|||||+||| ++|+.|. .++ . |+||.+|.+|||+||+++..=.+=|
T Consensus 596 ~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~----~S~-~----G~~T~~p~~fsNdfFvnLLdm~~~W 653 (726)
T PRK15061 596 VDKA-QLLTLTAPEMTVLVGGLRVLGANYG----GSK-H----GVFTDRPGVLTNDFFVNLLDMGTEW 653 (726)
T ss_pred HHHH-HhCCCChHHHhheecchhhcccCCC----CCC-C----CCCcCCCCccccHHHHHHhcCCcee
Confidence 9999 99999999999999997 6787773 333 3 8999999999999999987544433
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.6e-32 Score=255.01 Aligned_cols=183 Identities=36% Similarity=0.557 Sum_probs=161.8
Q ss_pred HHHHHHHHhhhhhhcC---------CcHHHHHHHHhhhcccccCCCCCCCCC-CccCChHHhhccccCcchHHHHhHHHH
Q 027926 15 AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPF 84 (217)
Q Consensus 15 ~v~~~~~~l~~~~~~~---------~~a~~~lRl~FHDc~~~D~s~~~gG~d-Gsi~~~~E~~~~~N~gl~~~~~~i~~i 84 (217)
.+.+.|++|.+++.+. ..+|.+|||+||-++||+...++||+. |..+|.++.+||.|.+|++++.+|.+|
T Consensus 68 D~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 68 DLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred cHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHHHHhhhH
Confidence 4777899999988876 368999999999999999999999987 699999999999999999999999999
Q ss_pred HhhCC-CCcHHHHHHHHhHHHhhhCCCCCCCCCCCCCCCCCCCC------------------------------------
Q 027926 85 KEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------------ 127 (217)
Q Consensus 85 K~~~p-~VS~ADiialaa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------------------ 127 (217)
|++|+ .+|+||+|+|++.+|+|.+|++.+.|..||.|...+..
T Consensus 148 KkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYV 227 (730)
T COG0376 148 KKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYV 227 (730)
T ss_pred hHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEe
Confidence 99998 99999999999999999999999999999999877632
Q ss_pred --C--CCCCCCCCChHHHHHHHHHHcCCChhhHHHhh-cchhhhhhcccCc-----------------------------
Q 027926 128 --E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLVSAKLEGA----------------------------- 173 (217)
Q Consensus 128 --~--~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~-GaHTiG~~h~~~~----------------------------- 173 (217)
+ +..|+|..+..+++..| ++|+++++|+|||+ ||||+|++|..+.
T Consensus 228 NPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g~G~G 306 (730)
T COG0376 228 NPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYGSGKG 306 (730)
T ss_pred CCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccCCCcC
Confidence 1 23688888899999999 99999999999995 7999999998751
Q ss_pred ---cCCCCCCCCCCCCCCCCCCcchHHHHhhh
Q 027926 174 ---TRRGLDLRDHGPATLSFLTIPTSRMCHWS 202 (217)
Q Consensus 174 ---~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~ 202 (217)
+.+|.+ ++|+.+|++|||.||.++-
T Consensus 307 ~dtitsGlE----~~Wt~tPT~w~n~ff~~Lf 334 (730)
T COG0376 307 PDTITSGLE----GAWTTTPTQWSNEFFENLF 334 (730)
T ss_pred ccccccccc----ccCCCCcchhhhHHHHHHh
Confidence 223333 6899999999999998753
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.7e-15 Score=140.56 Aligned_cols=184 Identities=25% Similarity=0.319 Sum_probs=145.2
Q ss_pred HHHHHHHHHhhhhhhcCCcHHHHHHHHhhhcccccCCCCCCCCCC-ccCChHHhhccccC--cchHHHHhHHHHHhhCC-
Q 027926 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP- 89 (217)
Q Consensus 14 ~~v~~~~~~l~~~~~~~~~a~~~lRl~FHDc~~~D~s~~~gG~dG-si~~~~E~~~~~N~--gl~~~~~~i~~iK~~~p- 89 (217)
+.|...|.+ ++...-....++-.+|-.+.||..|.+.||+|| .|++.+.++|+.|. -|.+.+.+++.|++.+.
T Consensus 449 ~di~~lK~~---IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnk 525 (730)
T COG0376 449 ADIAALKAK---ILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNK 525 (730)
T ss_pred HHHHHHHHH---HHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 455555555 466666788999999999999999999999998 89999999999996 56789999999999996
Q ss_pred CCcHHHHHHHHhHHHhhhC---CCC--CCCCCCCCCCCCCCC--CC---CCCCC------------CCCChHHHHHHHHH
Q 027926 90 TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QE---GRLPD------------AKQGNDHLRQVFGA 147 (217)
Q Consensus 90 ~VS~ADiialaa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~---~~lP~------------p~~~~~~l~~~F~~ 147 (217)
.||.||+|+|++..+||.+ .|- .+||.+||.|+.... .+ -.-|- ......-|+++- +
T Consensus 526 kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA-q 604 (730)
T COG0376 526 KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA-Q 604 (730)
T ss_pred ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH-H
Confidence 7999999999999999974 454 568899999997752 11 01121 112334577888 8
Q ss_pred HcCCChhhHHHhhcchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCCccce
Q 027926 148 QMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCLTCSV 209 (217)
Q Consensus 148 ~~Gl~~~e~VAL~GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~~~~~ 209 (217)
.++||..||++|+||-.+- ..+|.++.+|-||..|....|.||.++..-.+-|.
T Consensus 605 lL~LtapemtVLiGGlRvL--------g~n~g~s~~GVfT~~pg~LtndFFvnLlDM~~~W~ 658 (730)
T COG0376 605 LLTLTAPEMTVLIGGLRVL--------GANYGGSKHGVFTDRPGVLTNDFFVNLLDMGTEWK 658 (730)
T ss_pred HhccCCccceEEEcceEee--------ccCCCCCccceeccCcccccchhhhhhhhccceee
Confidence 8999999999999986543 33444556789999999999999999887666554
No 19
>PRK12346 transaldolase A; Provisional
Probab=35.54 E-value=36 Score=31.07 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHhHHHHHhhCCCCcHHHHHHHHhHHHhh--hCCCCCCCCCCCCCCCCCCC--CCCCCCC-CC---CChHHHHHHHHHH
Q 027926 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPP--QEGRLPD-AK---QGNDHLRQVFGAQ 148 (217)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~--~~~~lP~-p~---~~~~~l~~~F~~~ 148 (217)
|+..++.+++. .|+|--.+.+....++. .+|-..|..+.||.|-+.-. +...++. .. ..+.++.+.| ++
T Consensus 138 Gi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~ 214 (316)
T PRK12346 138 GIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-KQ 214 (316)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-HH
Confidence 44444444332 33333333444433333 46888899999998865321 1111211 12 3467788888 78
Q ss_pred cCCC----------hhhHHHhhcchh
Q 027926 149 MGLS----------DKDIVALSGGHT 164 (217)
Q Consensus 149 ~Gl~----------~~e~VAL~GaHT 164 (217)
.|+. ..|+.+|.|+|.
T Consensus 215 ~~~~T~Vm~ASfRn~~qi~alaG~d~ 240 (316)
T PRK12346 215 HRYETIVMGASFRRTEQILALAGCDR 240 (316)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCCE
Confidence 8864 578888999883
No 20
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=32.26 E-value=43 Score=30.50 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=46.5
Q ss_pred HHHhHHHHHhhCCCCcHHHHHHHHhHHHhh--hCCCCCCCCCCCCCCCCCCCCCC--CCCCC----CCChHHHHHHHHHH
Q 027926 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDA----KQGNDHLRQVFGAQ 148 (217)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~--~lP~p----~~~~~~l~~~F~~~ 148 (217)
|+..++.++++ .|+|-=.+.+....|+. .+|-..+..+.||.|-+.-...+ ..+.. -..+.++.+.| ++
T Consensus 137 Gi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~~ 213 (313)
T cd00957 137 GIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-KK 213 (313)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-HH
Confidence 44444444433 23333333333333332 35777889999998754321111 11111 13467788888 88
Q ss_pred cCCC----------hhhHHHhhcch
Q 027926 149 MGLS----------DKDIVALSGGH 163 (217)
Q Consensus 149 ~Gl~----------~~e~VAL~GaH 163 (217)
.|+. ..|+.+|+|+|
T Consensus 214 ~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 214 FGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred cCCCcEEEecccCCHHHHHHHhCCC
Confidence 8875 56777788887
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=31.49 E-value=52 Score=30.23 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCC-CC---CChHHHHHHHHHHcCCC----------hhhHHHhhcchh
Q 027926 108 TGGPDIPFHPGRDDKAEPPQ--EGRLPD-AK---QGNDHLRQVFGAQMGLS----------DKDIVALSGGHT 164 (217)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~--~~~lP~-p~---~~~~~l~~~F~~~~Gl~----------~~e~VAL~GaHT 164 (217)
+|-..+..+.||.+-+.-.+ ....+. .. ..+.++.+.| +..|+. .+|+.+|+|+|.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qi~~laG~D~ 251 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-KKHGYKTIVMGASFRNTGEILELAGCDK 251 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-HHcCCCeEEEecccCCHHHHHHHHCCCE
Confidence 57778899999986543221 111221 22 2467788888 788874 578888999983
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=31.48 E-value=49 Score=31.05 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCCC----ChHHHHHHHHHHcCCC----------hhhHHHhhcchh
Q 027926 108 TGGPDIPFHPGRDDKAEPPQE--GRLPDAKQ----GNDHLRQVFGAQMGLS----------DKDIVALSGGHT 164 (217)
Q Consensus 108 ~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~----~~~~l~~~F~~~~Gl~----------~~e~VAL~GaHT 164 (217)
+|-..|..+.||.|-+.-... ..+|...+ .+.++.+.| +..|+. ..|+..|+|+|.
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~~~~~~T~Im~ASfRn~~~v~~laG~d~ 245 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-KKFGYKTEVMGASFRNIGEIIELAGCDL 245 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-HhcCCCcEEEecccCCHHHHHHHHCCCe
Confidence 578889999999877543211 12443332 467788888 777764 567778889883
No 23
>PF10937 DUF2638: Protein of unknown function (DUF2638); InterPro: IPR020373 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a component of the mitochondrial small ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). This entry is represented by a mitochondrial ribosomal protein of the small subunit, which has similarity to human mitochondrial ribosomal protein MRP-S36 [, , ].
Probab=26.58 E-value=59 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.0
Q ss_pred CCCCCCCChHHHHHHHHHHcCCChhhHHHhh
Q 027926 130 RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS 160 (217)
Q Consensus 130 ~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~ 160 (217)
.++....+..+|=..| .++.++.+||-++.
T Consensus 79 ~~~g~~~~~~eLP~Rf-rr~p~se~EiE~In 108 (112)
T PF10937_consen 79 PLKGEYFDRSELPARF-RRKPISEEEIEAIN 108 (112)
T ss_pred CCCcceeeHHHcCHhH-ccCCCCHHHHHHHH
Confidence 3455567888999999 89999999999884
No 24
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=26.26 E-value=14 Score=37.02 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=37.8
Q ss_pred CCCCCCCCChHHHHHHHHHHcCCChhhHHHhhcchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhc
Q 027926 129 GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSL 203 (217)
Q Consensus 129 ~~lP~p~~~~~~l~~~F~~~~Gl~~~e~VAL~GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~ 203 (217)
.++|+|.....+..--++.+.-++.+|||++.|+--+ |||.+.-.+|+-+||.++++
T Consensus 693 ~alpsp~~~~~q~~~~p~~~l~~d~e~~vVivG~aEv------------------gpwGSsRTRfemE~~gelSa 749 (866)
T COG4982 693 AALPSPPRPFTQTPPQPRANLKVDFEDVVVIVGFAEV------------------GPWGSSRTRFEMEVEGELSA 749 (866)
T ss_pred ccCCCCCCCccCCCCCchhhcccCHHHceEEecceec------------------cCccCccchhhhhhccccch
Confidence 3577776554332222225667777999999876444 48888888899888876554
No 25
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=24.85 E-value=79 Score=28.86 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=36.7
Q ss_pred hCCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHHHcCCC----------hhhHHHhhcch
Q 027926 107 VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGH 163 (217)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~~Gl~----------~~e~VAL~GaH 163 (217)
.+|-..|..+.||.+-+.-...+ ..+. .-..+.++.+.| ++.|+. .+|+.+|+|+|
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k~~g~~T~Im~ASfRn~~qv~~laG~d 238 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-KKHGYPTEVMGASFRNKEEILALAGCD 238 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-HHcCCCcEEEeeccCCHHHHHHHHCCC
Confidence 45888899999998764221111 1111 123567788888 888874 56777888888
No 26
>PRK05269 transaldolase B; Provisional
Probab=24.38 E-value=43 Score=30.55 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=37.0
Q ss_pred hCCCCCCCCCCCCCCCCCCCC---CCCCCC---CCCChHHHHHHHHHHcCCC----------hhhHHHhhcchhh
Q 027926 107 VTGGPDIPFHPGRDDKAEPPQ---EGRLPD---AKQGNDHLRQVFGAQMGLS----------DKDIVALSGGHTL 165 (217)
Q Consensus 107 ~~GGP~~~v~~GR~D~~~s~~---~~~lP~---p~~~~~~l~~~F~~~~Gl~----------~~e~VAL~GaHTi 165 (217)
.+|-..+..+.||.|-+.-.. ...-+. .-..+.++.+.| ++.|+. ..++.+|+|+|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-KKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-HHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 357788899999987542211 111111 123577888889 888875 4666778888844
No 27
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=23.97 E-value=40 Score=28.46 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCChhhHHHhhcchhhhhhccc
Q 027926 138 NDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLE 171 (217)
Q Consensus 138 ~~~l~~~F~~~~Gl~~~e~VAL~GaHTiG~~h~~ 171 (217)
..++...| +++|+++-|.+.++..|.==+.|..
T Consensus 107 a~~la~wF-~~~Gi~IHd~ti~Ip~~vH~rIH~G 139 (188)
T PF09533_consen 107 AEELAEWF-ERRGIDIHDYTIPIPRDVHRRIHGG 139 (188)
T ss_pred cHHHHHHH-HHcCCChhheeEecCHHHHHHhhCC
Confidence 35799999 9999999999999987765566643
No 28
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=33 Score=27.60 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHcCCChhhH-HHhhcchhhhhhccc
Q 027926 136 QGNDHLRQVFGAQMGLSDKDI-VALSGGHTLVSAKLE 171 (217)
Q Consensus 136 ~~~~~l~~~F~~~~Gl~~~e~-VAL~GaHTiG~~h~~ 171 (217)
+++.+.+-.| .++||++.++ |.|--+|-||.+.-.
T Consensus 31 ddvkeqI~K~-akKGltpsqIGviLRDshGi~q~r~v 66 (151)
T KOG0400|consen 31 DDVKEQIYKL-AKKGLTPSQIGVILRDSHGIGQVRFV 66 (151)
T ss_pred HHHHHHHHHH-HHcCCChhHceeeeecccCcchhhee
Confidence 4567777889 8999999998 556789999988754
No 29
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=22.86 E-value=32 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=24.9
Q ss_pred hhHHHhhcchhhhhhcccCccCCCCCCCCCCCCCCCCCCcchHHHHhhhcCCccce
Q 027926 154 KDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLTIPTSRMCHWSLCLTCSV 209 (217)
Q Consensus 154 ~e~VAL~GaHTiG~~h~~~~~~~g~~~~~~g~~~~tp~~fDN~Yy~~~~~~~~~~~ 209 (217)
+|++--+ ||.+|.-||. +..-- -.+ ++..+..--|...+|+.|..
T Consensus 127 k~~~HEl-GH~lGL~HC~---~~~Cv----M~~---s~s~~e~D~k~~~lC~~C~~ 171 (179)
T PRK13267 127 KEVTHEL-GHTLGLEHCD---NPRCV----MNF---SNSVRDVDIKEPNFCGSCQR 171 (179)
T ss_pred HHHHHHH-HHHcCCccCC---CCCcc----CCC---CCCHHHHhCCCcccCHHHHH
Confidence 4455444 6999999998 33211 111 12222233345688999964
No 30
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=22.20 E-value=34 Score=30.01 Aligned_cols=86 Identities=13% Similarity=-0.045 Sum_probs=44.7
Q ss_pred HHHHhHHHHHhhCCCCcHHHHHHHHhHHHhh--hCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--C---ChHHHHHHHHH
Q 027926 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ-EGRLPDAK--Q---GNDHLRQVFGA 147 (217)
Q Consensus 76 ~~~~~i~~iK~~~p~VS~ADiialaa~~av~--~~GGP~~~v~~GR~D~~~s~~-~~~lP~p~--~---~~~~l~~~F~~ 147 (217)
.|++.++.++++ .|++-=.+.+....++. .+|...+.+++||.|...-.. ...-+++. . .+.++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 356666666554 23332223333333332 357778899999998755421 11112221 2 244677777 6
Q ss_pred HcCCC----------hhhHHHhhcchh
Q 027926 148 QMGLS----------DKDIVALSGGHT 164 (217)
Q Consensus 148 ~~Gl~----------~~e~VAL~GaHT 164 (217)
..|.. ..++..|.|.|+
T Consensus 204 ~~~~~tkiL~AS~r~~~~v~~l~G~d~ 230 (252)
T cd00439 204 QKFKKQRVLWASFSDTLYVAPLIGCDT 230 (252)
T ss_pred HhCCCCeEEEEeeCCHHHHHHhhCCCe
Confidence 66764 344555566664
No 31
>COG1913 Predicted Zn-dependent proteases [General function prediction only]
Probab=21.93 E-value=21 Score=30.06 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=13.3
Q ss_pred hhHHHhhcchhhhhhcccC
Q 027926 154 KDIVALSGGHTLVSAKLEG 172 (217)
Q Consensus 154 ~e~VAL~GaHTiG~~h~~~ 172 (217)
+|++-=+ ||++|-.||.|
T Consensus 126 KEv~HEl-GH~~GL~HC~N 143 (181)
T COG1913 126 KEVLHEL-GHLLGLSHCPN 143 (181)
T ss_pred HHHHHHh-hhhcCcccCCC
Confidence 4555544 69999999993
No 32
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=21.39 E-value=45 Score=20.98 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=11.0
Q ss_pred hcCCccceeeeec
Q 027926 202 SLCLTCSVVYCLS 214 (217)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (217)
..|+.|+.+|...
T Consensus 14 ~~C~~CgM~Y~~~ 26 (41)
T PF13878_consen 14 TTCPTCGMLYSPG 26 (41)
T ss_pred cCCCCCCCEECCC
Confidence 5899999999754
Done!