Query 027928
Match_columns 217
No_of_seqs 56 out of 58
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuf_A FLJ21616 protein; homeo 99.6 1.9E-16 6.5E-21 116.3 5.9 69 76-145 6-85 (95)
2 2da6_A Hepatocyte nuclear fact 99.6 1.9E-15 6.5E-20 116.7 6.2 69 77-146 6-91 (102)
3 2dmq_A LIM/homeobox protein LH 99.5 2.6E-14 8.7E-19 101.2 4.9 68 76-148 6-73 (80)
4 2dms_A Homeobox protein OTX2; 99.5 1.8E-14 6.1E-19 102.5 3.4 66 76-146 6-71 (80)
5 2da3_A Alpha-fetoprotein enhan 99.5 1.4E-14 4.8E-19 102.0 2.2 62 75-141 15-76 (80)
6 3a02_A Homeobox protein arista 99.4 2.5E-14 8.6E-19 96.7 2.0 59 79-142 1-59 (60)
7 2da4_A Hypothetical protein DK 99.4 4.1E-14 1.4E-18 100.6 2.7 62 76-141 7-71 (80)
8 2hi3_A Homeodomain-only protei 99.4 1E-13 3.6E-18 97.3 4.5 61 78-142 3-63 (73)
9 2cue_A Paired box protein PAX6 99.4 1.3E-13 4.4E-18 98.3 5.0 66 76-146 6-71 (80)
10 1fjl_A Paired protein; DNA-bin 99.4 1E-13 3.6E-18 98.7 4.4 63 75-142 16-78 (81)
11 1uhs_A HOP, homeodomain only p 99.4 1.7E-13 5.7E-18 95.8 4.5 60 79-142 3-62 (72)
12 1zq3_P PRD-4, homeotic bicoid 99.4 1.6E-13 5.6E-18 95.1 4.4 64 77-145 2-65 (68)
13 2k40_A Homeobox expressed in E 99.4 6.3E-14 2.2E-18 96.5 2.1 61 78-143 2-62 (67)
14 2kt0_A Nanog, homeobox protein 99.4 4.8E-14 1.7E-18 100.6 1.2 66 72-142 17-82 (84)
15 1ig7_A Homeotic protein MSX-1; 99.4 1.6E-13 5.5E-18 91.7 3.3 56 79-139 2-57 (58)
16 2da1_A Alpha-fetoprotein enhan 99.4 7.6E-14 2.6E-18 96.6 1.4 62 76-142 6-67 (70)
17 1nk2_P Homeobox protein VND; h 99.4 4.3E-13 1.5E-17 95.0 5.2 65 76-145 8-72 (77)
18 2e1o_A Homeobox protein PRH; D 99.4 2.6E-13 9E-18 94.3 4.0 61 77-142 7-67 (70)
19 2dmu_A Homeobox protein goosec 99.4 2.2E-13 7.7E-18 94.5 3.5 62 76-142 6-67 (70)
20 1jgg_A Segmentation protein EV 99.4 2.2E-13 7.5E-18 92.1 2.8 57 79-140 3-59 (60)
21 2vi6_A Homeobox protein nanog; 99.4 6.3E-14 2.1E-18 95.3 0.1 59 78-141 4-62 (62)
22 2da2_A Alpha-fetoprotein enhan 99.3 1E-13 3.5E-18 95.9 0.6 61 77-142 7-67 (70)
23 1yz8_P Pituitary homeobox 2; D 99.3 1.6E-13 5.4E-18 95.0 1.5 62 77-143 3-64 (68)
24 1puf_A HOX-1.7, homeobox prote 99.3 6.2E-13 2.1E-17 94.1 4.6 63 76-143 12-74 (77)
25 2hdd_A Protein (engrailed home 99.3 3.2E-13 1.1E-17 91.6 2.6 58 77-139 3-60 (61)
26 1ahd_P Antennapedia protein mu 99.3 2.6E-13 8.9E-18 94.4 2.2 60 78-142 3-62 (68)
27 1lfb_A Liver transcription fac 99.3 9.8E-14 3.3E-18 105.0 -0.2 65 77-142 9-90 (99)
28 2h1k_A IPF-1, pancreatic and d 99.3 6.4E-13 2.2E-17 90.8 3.5 58 78-140 4-61 (63)
29 2dmt_A Homeobox protein BARH-l 99.3 7.4E-13 2.5E-17 94.3 3.8 62 75-141 15-76 (80)
30 1b72_A Protein (homeobox prote 99.3 7.5E-13 2.6E-17 97.5 3.8 63 75-142 32-94 (97)
31 1ftt_A TTF-1 HD, thyroid trans 99.3 5.4E-13 1.8E-17 92.5 2.2 61 78-143 3-63 (68)
32 3a01_A Homeodomain-containing 99.3 1.6E-12 5.4E-17 95.7 4.8 65 76-145 16-80 (93)
33 2djn_A Homeobox protein DLX-5; 99.3 3.3E-13 1.1E-17 93.9 1.0 60 76-140 6-65 (70)
34 1bw5_A ISL-1HD, insulin gene e 99.3 3.1E-13 1.1E-17 92.8 0.8 60 77-141 3-62 (66)
35 2cra_A Homeobox protein HOX-B1 99.3 2.4E-13 8.1E-18 94.6 0.2 61 76-141 6-66 (70)
36 2l7z_A Homeobox protein HOX-A1 99.3 1.6E-12 5.5E-17 91.4 3.8 61 77-142 7-67 (73)
37 2r5y_A Homeotic protein sex co 99.3 7E-13 2.4E-17 95.9 2.0 61 76-141 27-87 (88)
38 2ly9_A Zinc fingers and homeob 99.3 5.7E-13 1.9E-17 93.0 1.4 64 77-145 6-69 (74)
39 1b8i_A Ultrabithorax, protein 99.3 7.2E-13 2.5E-17 95.0 1.7 61 77-142 20-80 (81)
40 2dn0_A Zinc fingers and homeob 99.3 3.4E-13 1.2E-17 95.3 -0.1 63 77-144 8-70 (76)
41 2m0c_A Homeobox protein arista 99.3 7.9E-13 2.7E-17 91.8 1.6 62 76-142 8-69 (75)
42 3rkq_A Homeobox protein NKX-2. 99.3 1.4E-12 4.7E-17 86.2 2.7 55 79-138 4-58 (58)
43 3a03_A T-cell leukemia homeobo 99.3 1.6E-12 5.4E-17 87.2 2.9 53 83-140 3-55 (56)
44 2dmp_A Zinc fingers and homeob 99.2 3.8E-12 1.3E-16 93.2 4.2 58 84-146 20-77 (89)
45 1puf_B PRE-B-cell leukemia tra 99.2 2.9E-12 9.8E-17 89.5 3.2 62 78-143 2-65 (73)
46 1b72_B Protein (PBX1); homeodo 99.2 3.7E-12 1.3E-16 91.3 3.3 62 78-143 2-65 (87)
47 2e19_A Transcription factor 8; 99.2 2.4E-12 8.3E-17 89.9 1.6 57 78-139 4-60 (64)
48 2da5_A Zinc fingers and homeob 99.2 3E-12 1E-16 90.7 1.9 59 79-142 9-67 (75)
49 1akh_A Protein (mating-type pr 99.2 3.6E-12 1.2E-16 85.9 1.7 57 77-138 5-61 (61)
50 1k61_A Mating-type protein alp 99.2 5.3E-12 1.8E-16 85.0 2.4 55 81-139 2-58 (60)
51 1du6_A PBX1, homeobox protein 99.2 2.6E-12 8.9E-17 87.5 0.5 59 77-139 3-63 (64)
52 2l9r_A Homeobox protein NKX-3. 99.2 2E-12 7E-17 92.3 -1.1 56 85-145 12-67 (69)
53 3nar_A ZHX1, zinc fingers and 99.1 1.2E-11 4E-16 91.1 1.2 59 78-141 26-84 (96)
54 2cqx_A LAG1 longevity assuranc 99.1 1.2E-11 4E-16 88.0 0.7 56 80-139 11-66 (72)
55 1wh5_A ZF-HD homeobox family p 99.1 2.2E-11 7.6E-16 88.0 1.5 59 76-138 16-77 (80)
56 1mnm_C Protein (MAT alpha-2 tr 99.1 6.5E-11 2.2E-15 85.4 3.3 59 76-138 26-86 (87)
57 1au7_A Protein PIT-1, GHF-1; c 99.1 2E-11 6.9E-16 96.3 0.5 60 76-140 86-145 (146)
58 2ecc_A Homeobox and leucine zi 99.1 6.3E-11 2.1E-15 87.0 3.0 66 78-148 4-69 (76)
59 1x2n_A Homeobox protein pknox1 99.0 1.1E-10 3.8E-15 81.4 3.9 61 77-141 7-69 (73)
60 2dmn_A Homeobox protein TGIF2L 99.0 1.6E-10 5.6E-15 83.4 4.6 65 78-146 8-74 (83)
61 2ecb_A Zinc fingers and homeob 99.0 9.3E-11 3.2E-15 87.7 3.3 59 83-146 17-75 (89)
62 1le8_B Mating-type protein alp 99.0 3.9E-11 1.3E-15 86.3 1.1 55 83-141 8-64 (83)
63 1e3o_C Octamer-binding transcr 99.0 4.6E-11 1.6E-15 95.2 1.4 60 76-140 100-159 (160)
64 2xsd_C POU domain, class 3, tr 99.0 2.8E-11 9.7E-16 97.5 0.0 62 76-142 98-159 (164)
65 3d1n_I POU domain, class 6, tr 99.0 1E-10 3.5E-15 92.0 2.9 59 76-139 92-150 (151)
66 2d5v_A Hepatocyte nuclear fact 99.0 6.1E-11 2.1E-15 93.7 0.6 61 75-140 95-155 (164)
67 1x2m_A LAG1 longevity assuranc 99.0 5.8E-11 2E-15 84.7 0.3 50 85-138 8-57 (64)
68 1ic8_A Hepatocyte nuclear fact 99.0 6.6E-11 2.2E-15 98.8 0.0 65 74-139 112-193 (194)
69 3l1p_A POU domain, class 5, tr 98.9 2.2E-10 7.5E-15 91.0 1.7 59 76-139 95-153 (155)
70 1wh7_A ZF-HD homeobox family p 98.9 4.5E-10 1.5E-14 81.7 2.2 57 77-138 17-77 (80)
71 2h8r_A Hepatocyte nuclear fact 98.9 5E-10 1.7E-14 96.2 1.9 65 72-137 137-218 (221)
72 3nau_A Zinc fingers and homeob 98.8 1.8E-09 6.3E-14 78.1 2.5 52 84-140 11-62 (66)
73 3k2a_A Homeobox protein MEIS2; 98.7 1.6E-09 5.6E-14 75.6 1.0 56 83-142 4-61 (67)
74 1wi3_A DNA-binding protein SAT 98.7 4.8E-09 1.7E-13 77.6 2.0 55 76-134 6-60 (71)
75 2da7_A Zinc finger homeobox pr 98.5 4.7E-08 1.6E-12 72.2 2.5 49 83-136 11-59 (71)
76 2lk2_A Homeobox protein TGIF1; 98.2 7.5E-07 2.6E-11 67.3 2.5 58 84-145 12-71 (89)
77 1mh3_A Maltose binding-A1 home 98.1 4.6E-07 1.6E-11 75.9 -0.3 51 83-138 371-421 (421)
78 2nzz_A Penetratin conjugated G 96.8 0.00014 4.9E-09 47.5 -0.9 22 125-146 2-23 (37)
79 3hug_A RNA polymerase sigma fa 64.6 6.5 0.00022 27.1 3.5 36 85-130 39-74 (92)
80 1tc3_C Protein (TC3 transposas 60.5 2.6 8.7E-05 24.4 0.7 39 85-133 7-45 (51)
81 1jko_C HIN recombinase, DNA-in 59.2 2 6.7E-05 25.5 0.0 40 85-134 7-46 (52)
82 3mzy_A RNA polymerase sigma-H 57.2 10 0.00035 26.8 3.5 44 84-142 110-153 (164)
83 2x48_A CAG38821; archeal virus 55.5 2.4 8.3E-05 26.5 -0.0 44 78-131 8-53 (55)
84 4dox_A Coat protein; all helix 46.4 5.7 0.00019 34.4 0.8 46 79-126 11-56 (226)
85 2o8x_A Probable RNA polymerase 43.5 8.5 0.00029 24.4 1.1 44 85-142 17-60 (70)
86 1fse_A GERE; helix-turn-helix 41.6 9.6 0.00033 24.4 1.2 38 83-131 11-48 (74)
87 1s7o_A Hypothetical UPF0122 pr 41.0 15 0.00051 27.2 2.3 38 84-131 23-60 (113)
88 3ulq_B Transcriptional regulat 40.7 24 0.00081 25.0 3.3 49 77-140 23-71 (90)
89 3qqa_A CMER; alpha-helical, he 38.2 4.9 0.00017 29.2 -0.7 38 91-135 28-65 (216)
90 1wj7_A Hypothetical protein (R 37.0 39 0.0013 26.1 4.1 36 77-114 13-49 (104)
91 3lkv_A Uncharacterized conserv 36.8 17 0.00058 29.6 2.2 32 104-135 21-53 (302)
92 1xsv_A Hypothetical UPF0122 pr 35.6 19 0.00065 26.4 2.1 37 85-131 27-63 (113)
93 1p4w_A RCSB; solution structur 35.4 15 0.00052 26.6 1.5 37 83-130 34-70 (99)
94 2lfw_A PHYR sigma-like domain; 34.8 22 0.00076 26.3 2.4 45 85-143 95-139 (157)
95 1rp3_A RNA polymerase sigma fa 34.1 38 0.0013 25.5 3.6 44 85-142 189-232 (239)
96 1ku3_A Sigma factor SIGA; heli 32.8 42 0.0015 21.9 3.3 44 85-142 12-59 (73)
97 1x3u_A Transcriptional regulat 31.6 16 0.00055 23.8 1.0 34 85-129 18-51 (79)
98 3c57_A Two component transcrip 31.6 19 0.00066 25.2 1.5 44 84-142 28-71 (95)
99 1u78_A TC3 transposase, transp 30.7 17 0.00058 25.7 1.1 41 84-134 7-47 (141)
100 1je8_A Nitrate/nitrite respons 30.5 18 0.00062 24.7 1.2 43 83-140 21-63 (82)
101 2fu4_A Ferric uptake regulatio 30.0 52 0.0018 21.8 3.4 31 82-112 13-43 (83)
102 3g1o_A Transcriptional regulat 29.5 18 0.00061 27.7 1.1 37 92-135 53-89 (255)
103 1mzb_A Ferric uptake regulatio 28.9 69 0.0024 23.7 4.3 44 82-127 14-57 (136)
104 1fi6_A EH domain protein REPS1 27.0 67 0.0023 21.6 3.6 32 82-113 1-36 (92)
105 3eyy_A Putative iron uptake re 23.7 68 0.0023 24.2 3.5 42 81-127 14-56 (145)
106 1tty_A Sigma-A, RNA polymerase 23.5 62 0.0021 22.0 2.9 44 85-142 20-67 (87)
107 4ets_A Ferric uptake regulatio 23.5 99 0.0034 23.9 4.4 46 81-127 28-73 (162)
108 2f8v_T Telethonin; sarcomere, 23.4 17 0.00058 30.5 0.0 38 83-121 107-146 (167)
109 3on2_A Probable transcriptiona 23.3 27 0.00093 24.6 1.0 45 84-135 12-58 (199)
110 2fe3_A Peroxide operon regulat 23.3 92 0.0031 23.3 4.1 42 82-127 18-60 (145)
111 2rnj_A Response regulator prot 22.0 20 0.00069 24.6 0.2 43 84-141 30-72 (91)
112 4dhd_A Polyprenyl synthetase; 21.6 83 0.0028 27.7 4.0 54 84-146 262-315 (358)
113 2xzm_M RPS18E; ribosome, trans 21.5 25 0.00087 28.6 0.7 31 101-134 59-89 (155)
114 3zed_D Capsid protein VP3; vir 21.5 1.1E+02 0.0037 27.0 4.6 35 84-118 171-206 (242)
115 3ol3_A Putative uncharacterize 21.4 84 0.0029 24.4 3.6 33 85-119 67-99 (107)
116 1or7_A Sigma-24, RNA polymeras 21.4 40 0.0014 24.8 1.7 44 85-142 142-185 (194)
117 3clo_A Transcriptional regulat 21.4 59 0.002 26.1 2.8 45 83-142 197-241 (258)
118 3i5g_C Myosin catalytic light 21.2 79 0.0027 23.3 3.3 32 85-116 4-41 (159)
119 2q1z_A RPOE, ECF SIGE; ECF sig 21.1 17 0.00059 26.6 -0.4 44 85-142 137-180 (184)
120 2hxi_A Putative transcriptiona 20.7 44 0.0015 26.3 1.9 52 77-135 22-75 (241)
No 1
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.9e-16 Score=116.35 Aligned_cols=69 Identities=16% Similarity=0.424 Sum_probs=62.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhh-----------hcCcccCceeeEeecccHHHHHHHHHhh
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLG-----------KYGKIEGKNVFYWFQNHKARERQKQKRN 144 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~-----------~~G~Ie~kNVfyWFQNrKAReRrKqrr~ 144 (217)
...+.|+.+|++||.+||..|... .+|+.+++++|+..|. .+|.|++++|++|||||||+.|++++..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 346789999999999999999984 6999999999999998 6777999999999999999999988764
Q ss_pred h
Q 027928 145 S 145 (217)
Q Consensus 145 ~ 145 (217)
.
T Consensus 85 ~ 85 (95)
T 2cuf_A 85 A 85 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=116.68 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhh-------------hcC----cccCceeeEeecccHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLG-------------KYG----KIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~-------------~~G----~Ie~kNVfyWFQNrKAReRr 139 (217)
..+.|...|++|+.+||..|.... +|+.+++++|+..|. .|| .|.+.+|++|||||||++++
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 456688889999999999999987 999999999999994 467 99999999999999999999
Q ss_pred HHHhhhc
Q 027928 140 KQKRNSL 146 (217)
Q Consensus 140 Kqrr~~l 146 (217)
+++....
T Consensus 85 ~~~~~~~ 91 (102)
T 2da6_A 85 RQKLAMD 91 (102)
T ss_dssp HHHHHHS
T ss_pred hhHhhhc
Confidence 8876543
No 3
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=101.19 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=60.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhcCC
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGL 148 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l~~ 148 (217)
.+.+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ |.+..|.+|||||||+.|+++++..-+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~~~~ 73 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLRQENGG 73 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHHHhcCC
Confidence 346679999999999999999876 5999999999999998 9999999999999999999988765443
No 4
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.8e-14 Score=102.48 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=59.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
.+.+.|+.+|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|.+|||||||+.|++++....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 456789999999999999999886 4999999999999998 99999999999999999998876544
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=102.00 Aligned_cols=62 Identities=31% Similarity=0.473 Sum_probs=56.5
Q ss_pred cCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 75 THPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 75 t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
....+.|+.+|++||.+||..|... .+|+.+++.+|+..|+ +.+..|.+||||||||+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhc
Confidence 3457789999999999999999877 5999999999999998 999999999999999998764
No 6
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.43 E-value=2.5e-14 Score=96.70 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=48.9
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++|..+|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+|||||||+.|++++
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 478999999999999999875 5999999999999998 9999999999999999988764
No 7
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-14 Score=100.63 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=56.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCC---CCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGM---RTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~---rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
.+.+.|+.+|++|+.+||..|...| .+|+.+++++|+..|+ |.++.|.+||||+|||.|++.
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhcc
Confidence 4567899999999999999998874 6999999999999998 999999999999999998754
No 8
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1e-13 Score=97.27 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=56.5
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
+..|..+|++|+.+||..|.....+|+.+++.+|+..|+ +.+..|.+|||||||+.|++++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhcc
Confidence 567999999999999999986557999999999999999 9999999999999999998875
No 9
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.3e-13 Score=98.26 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=59.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
...+.|..+|++|+.+||..|.... +|+.+++.+|+..|+ +.+..|.+|||||||++|++++..+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 3456799999999999999998764 999999999999998 99999999999999999998766553
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.42 E-value=1e-13 Score=98.72 Aligned_cols=63 Identities=21% Similarity=0.368 Sum_probs=57.4
Q ss_pred cCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 75 THPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 75 t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
....+.|+.+|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|.+||||||||.|++.+
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhcc
Confidence 3456789999999999999999886 5999999999999998 9999999999999999998875
No 11
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=1.7e-13 Score=95.77 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=55.6
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..|...|++|+.+||..|.....+|+.+++.+|+..|+ +.+..|.+|||||||+.|++++
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhcc
Confidence 46888999999999999997567999999999999999 9999999999999999998775
No 12
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.40 E-value=1.6e-13 Score=95.15 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=58.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
+.+.|...|++|+.+||..|.... +|+.+++.+|+..|+ +.++.|..||||||||+|++.+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhcccc
Confidence 456899999999999999998864 999999999999999 9999999999999999999887543
No 13
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.40 E-value=6.3e-14 Score=96.54 Aligned_cols=61 Identities=28% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
.+.|+.+|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+||||+||++|++.+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhchh
Confidence 4579999999999999999875 5999999999999998 99999999999999999877654
No 14
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=4.8e-14 Score=100.55 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=58.4
Q ss_pred CcccCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 72 QVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 72 ~v~t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.+.....+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ +.+..|.+|||||||++|++++
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhh
Confidence 3344567789999999999999999876 4999999999999998 9999999999999999988664
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=1.6e-13 Score=91.75 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=52.2
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
..|...|++|+.+||..|.... +|+.+++.+|+..|+ ++++.|..||||++|++|+
T Consensus 2 r~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 4689999999999999998764 999999999999998 9999999999999999875
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=7.6e-14 Score=96.60 Aligned_cols=62 Identities=24% Similarity=0.416 Sum_probs=56.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.+...|..+|++|+.+||..|... .+|+.+++.+|+..|+ +++..|.+||||+||++|++.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhcc
Confidence 356789999999999999999886 4999999999999998 9999999999999999987643
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.37 E-value=4.3e-13 Score=94.96 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=58.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
.....|...|++|+.+||..|.... +|+.+++.+|+..|+ +.++.|.+|||||||++|+++....
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhcccc
Confidence 3466799999999999999998864 999999999999998 9999999999999999998877543
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=2.6e-13 Score=94.34 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ |.++.|.+|||||||++|+.+.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCCC
Confidence 45679999999999999999876 5999999999999998 9999999999999999988654
No 19
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=94.45 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=56.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.+.+.|...|++|+.+||..|... .+|+.+++.+|+..|+ +.+..|.+||||+||++|++..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHC----CCHHHeehccccccccccccCC
Confidence 346679999999999999999885 5999999999999998 9999999999999999987643
No 20
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.36 E-value=2.2e-13 Score=92.06 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=53.1
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
+.|...|++|+.+||..|...- +|+.+++.+|+..|+ ++++.|..||||++|++|++
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 3 RYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhcc
Confidence 5689999999999999998874 999999999999998 99999999999999999875
No 21
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.36 E-value=6.3e-14 Score=95.29 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=51.5
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
...|..+|++|+.+||..|... .+|+.+++.+|+..|+ +++..|.+||||++|++|++|
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 4 QKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ----CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhcC
Confidence 4579999999999999999876 4999999999999999 999999999999999998764
No 22
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=1e-13 Score=95.94 Aligned_cols=61 Identities=21% Similarity=0.431 Sum_probs=55.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ +++..|.+|||||||++|++++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhccc
Confidence 45679999999999999999886 4999999999999998 9999999999999999987544
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.35 E-value=1.6e-13 Score=95.02 Aligned_cols=62 Identities=24% Similarity=0.384 Sum_probs=56.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
....|..+|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+||||+||+.|++++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhc
Confidence 35679999999999999999885 5999999999999998 99999999999999999988764
No 24
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.35 E-value=6.2e-13 Score=94.14 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
.....|..+|++|+.+||..|.... +|+.+++.+|+..|+ +++..|..|||||||++|+..+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhh
Confidence 3566899999999999999998764 999999999999999 99999999999999999988764
No 25
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.34 E-value=3.2e-13 Score=91.55 Aligned_cols=58 Identities=19% Similarity=0.376 Sum_probs=51.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
+.+.|..+|++|+.+||..|...- +|+.+++.+|+..|+ +++..|..||||+||++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHhhhhcccccc
Confidence 356799999999999999998864 999999999999998 9999999999999999885
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.34 E-value=2.6e-13 Score=94.35 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.+.|+.+|++|+.+||..|...- +|+.+++.+|+..|+ ++++.|.+|||||||++|++.+
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhcc
Confidence 45789999999999999998774 999999999999998 9999999999999999998765
No 27
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.33 E-value=9.8e-14 Score=105.00 Aligned_cols=65 Identities=18% Similarity=0.355 Sum_probs=53.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhh---------------c--CcccCceeeEeecccHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGK---------------Y--GKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~---------------~--G~Ie~kNVfyWFQNrKAReRr 139 (217)
..+.||.+|++||.+||..|... .+|+.++.++|+..+.. . ..|++..|++|||||||++++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 46789999999999999999986 49999999999999442 2 249999999999999998877
Q ss_pred HHH
Q 027928 140 KQK 142 (217)
Q Consensus 140 Kqr 142 (217)
|++
T Consensus 88 k~~ 90 (99)
T 1lfb_A 88 RHK 90 (99)
T ss_dssp CC-
T ss_pred hch
Confidence 664
No 28
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.33 E-value=6.4e-13 Score=90.75 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
.+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|..||||+||+.|++
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 4 KRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhh
Confidence 4679999999999999999876 4999999999999998 99999999999999999875
No 29
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7.4e-13 Score=94.33 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=55.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 75 THPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 75 t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
....+.|..+|++|+.+||..|.... +|+.+++.+|+..|+ +.++.|.+|||||||++|++.
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhccc
Confidence 34567899999999999999998864 999999999999998 999999999999999987653
No 30
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=7.5e-13 Score=97.48 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=54.8
Q ss_pred cCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 75 THPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 75 t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..+.+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|..|||||||++|++++
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhc
Confidence 4566789999999999999999876 4999999999999999 9999999999999999998875
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.30 E-value=5.4e-13 Score=92.55 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=55.6
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
...|...|++|+.+||..|.... +|+.+++.+|+..|+ +++..|-+||||+||++|++.+.
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhH
Confidence 35789999999999999998765 999999999999999 99999999999999999987653
No 32
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.30 E-value=1.6e-12 Score=95.75 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=58.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
...+.|...|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+|||||||+.|++.+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHHH
Confidence 346679999999999999999886 4999999999999998 9999999999999999999876544
No 33
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.3e-13 Score=93.87 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=54.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
.+...|+.+|++|+.+||..|... .+|+.+++.+|+..|+ +.+..|.+||||+|||+|++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhccc
Confidence 346679999999999999999876 4999999999999998 99999999999999988764
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.30 E-value=3.1e-13 Score=92.80 Aligned_cols=60 Identities=22% Similarity=0.426 Sum_probs=54.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
+.+.|..+|++|+.+||..|... .+|+.+++.+|+..|+ +++..|..||||+||++|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHh
Confidence 45679999999999999999886 5999999999999998 999999999999999987643
No 35
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=2.4e-13 Score=94.57 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=55.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
.....|..+|++|+.+||..|.... +|+.+++.+|+..|+ +.++.|..|||||||++|+++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccC
Confidence 3456799999999999999998864 999999999999998 999999999999999987654
No 36
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.28 E-value=1.6e-12 Score=91.42 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=55.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
....|..+|++|+.+||..|... .+|+.+++.+|+..|+ +.+..|..|||||||++|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHhc
Confidence 46679999999999999999886 4999999999999999 9999999999999999887543
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.28 E-value=7e-13 Score=95.91 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
...+.|..+|.+||.+||..|... .+|+.+++.+|+..|+ +.++.|..|||||||++|+++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhc
Confidence 346689999999999999999876 5999999999999998 999999999999999998754
No 38
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.28 E-value=5.7e-13 Score=93.05 Aligned_cols=64 Identities=20% Similarity=0.386 Sum_probs=57.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
+.+.|...|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|..||||+||+.|+++....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhCcCCC
Confidence 46679999999999999999976 4999999999999998 9999999999999999988765443
No 39
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.28 E-value=7.2e-13 Score=95.01 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=52.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..+.|...|++|+.+||..|.... +|+.+++.+|+..|+ ++++.|..|||||||++|++++
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 356799999999999999998864 999999999999999 9999999999999999987643
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-13 Score=95.26 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhh
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRN 144 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~ 144 (217)
|...|-..|++||.+||..|... .+|+.+++.+|+..|+ +.++.|..|||||||+.|++++..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhcccC
Confidence 45568899999999999999886 4999999999999998 999999999999999998866543
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.27 E-value=7.9e-13 Score=91.82 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=56.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.+.+.|...|++|+.+||..|.... +|+..++.+|+..|+ +++..|-+||||+||+.|++.+
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHh
Confidence 3466799999999999999998775 999999999999998 9999999999999999987655
No 42
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=86.25 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=50.8
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
..|...|++|+.+||..|.... +|+.+++.+|+..|+ ++...|-.||||+||++|
T Consensus 4 r~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 5688999999999999998764 999999999999998 899999999999999874
No 43
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=87.24 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
..|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|..||||||||.|++
T Consensus 3 ~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQ-KYLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 47899999999999876 5999999999999999 99999999999999999875
No 44
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=93.23 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
.|++||.+||..|... .+|+.+++.+|+..|+ +.++.|..||||||||.|++.+....
T Consensus 20 ~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKS-SFPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred CCHHHHHHHHHHHccC-CCCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 8999999999999886 5999999999999999 99999999999999999887765443
No 45
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.24 E-value=2.9e-12 Score=89.49 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=55.2
Q ss_pred CCCCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 78 GGTRWNPTQEQIGILEMLYR--GGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~--~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
.+.|...|++|+.+||..|. ....+|+.+++.+|+..|+ ++.+.|-+||||+|+|.|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccccccc
Confidence 46788999999999999994 4567999999999999998 99999999999999999876543
No 46
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.23 E-value=3.7e-12 Score=91.27 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=55.1
Q ss_pred CCCCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 78 GGTRWNPTQEQIGILEMLYR--GGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~--~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
.+.|...|++|+.+||..|. ....+|+.+++.+|+..|+ +..+.|.+||||+|+|.|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhcccc
Confidence 35789999999999999995 5567999999999999998 99999999999999999987543
No 47
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-12 Score=89.90 Aligned_cols=57 Identities=19% Similarity=0.402 Sum_probs=51.5
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
|..+=+|+.+|+.+||..|... .+|+.+++.+|+..|+ +.++.|..||||||||++.
T Consensus 4 g~~~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 4 GSSGQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSC
T ss_pred CCCCCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCC
Confidence 5667889999999999999875 6999999999999999 9999999999999997653
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3e-12 Score=90.65 Aligned_cols=59 Identities=12% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
..|=..|++||.+||..|...- +|+.+++.+|+..|+ +.++.|..|||||||+.|++.+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhh
Confidence 3455689999999999998864 999999999999998 9999999999999999988765
No 49
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.19 E-value=3.6e-12 Score=85.89 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=46.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
+...|...|++|+.+||..|... .+|+.+++.+|+..|+ +++..|-+||||++||+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 45678899999999999999877 5999999999999999 999999999999999864
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.19 E-value=5.3e-12 Score=85.04 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCCCChHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 81 RWNPTQEQIGILEMLYRGG--MRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 81 RW~PTpEQL~iLE~lY~~G--~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
|=+.|++|+.+||..|... ..+|+.+++.+|+..|+ ++.+.|-+||||+|||.|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHccccc
Confidence 3468999999999999884 67999999999999998 9999999999999999874
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.6e-12 Score=87.52 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCCCCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYR--GGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~--~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
+...|-..|++|+.+||..|. ....+|+.+++.+|+..|+ ++.+.|-+||||+|+|.|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhcc
Confidence 456788999999999999994 5567999999999999998 9999999999999998764
No 52
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.15 E-value=2e-12 Score=92.29 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
|++|+.+||..|...- +|+.+++.+|+..|+ ++++.|..|||||||+.|++++...
T Consensus 12 t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 12 SHTQVIELERKFSHQK-YLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhhhhh
Confidence 7899999999998774 999999999999998 9999999999999999988765433
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.11 E-value=1.2e-11 Score=91.12 Aligned_cols=59 Identities=15% Similarity=0.383 Sum_probs=53.4
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
.+.|...|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|..||||||++.|+++
T Consensus 26 ~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 26 TGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhc
Confidence 4578999999999999999876 4999999999999998 999999999999999998753
No 54
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.10 E-value=1.2e-11 Score=87.96 Aligned_cols=56 Identities=14% Similarity=0.344 Sum_probs=49.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 80 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 80 ~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
.|=..|++|+.+||..|.....+|+.+++.+|+..|+ +++..|.+|||||||++|+
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCC
Confidence 4556788999999999955557999999999999998 9999999999999999873
No 55
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.08 E-value=2.2e-11 Score=88.04 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=52.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHhc-C--CCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRG-G--MRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~-G--~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
...+.|-..|++|+.+||.+|.. | +.+|+.+++++|+..|+ |.++.|.+|||||||+.|
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhC----CCcccccCCccccCcCCC
Confidence 34667899999999999999987 3 67999999999999997 999999999999998654
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.06 E-value=6.5e-11 Score=85.41 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGG--MRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G--~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
.+...|-..|++|+.+||..|... ..+|+.+++.+|+..|+ +..+.|-+||||+|||.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhcc
Confidence 345568889999999999999872 67999999999999998 999999999999999976
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.06 E-value=2e-11 Score=96.35 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=53.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
...+.|...|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|..||||||||+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhcc
Confidence 346679999999999999999886 5999999999999998 99999999999999998875
No 58
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=6.3e-11 Score=87.04 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=57.1
Q ss_pred CCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhcCC
Q 027928 78 GGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGL 148 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l~~ 148 (217)
|+.|=..|++||.+||..|... .+|+.+++++|+..|+ +.++.|-.||||+|++.|+.+.+.-..+
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~~l~w~~~~ 69 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHGQLKWFRDN 69 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHTCCSSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHHHHHHHHHH
Confidence 5678889999999999999976 5999999999999999 9999999999999999887655443333
No 59
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=1.1e-10 Score=81.39 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCCCCCCCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRG--GMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~--G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
....|-..|++|+.+||..|.. -..+|+.++..+|+..|+ +..+.|-.||||+|+|.+++.
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhccccc
Confidence 3456888999999999999975 467999999999999998 999999999999999998764
No 60
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=83.42 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCCCCCCChHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 78 GGTRWNPTQEQIGILEMLYRGG--MRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 78 ~~~RW~PTpEQL~iLE~lY~~G--~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
...|-..|.+|+.+||..|..- ..+|+.++..+|+..|+ +..+.|-+||||+|+|.+++..+...
T Consensus 8 rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 4568889999999999999763 67999999999999998 99999999999999999887665443
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.03 E-value=9.3e-11 Score=87.66 Aligned_cols=59 Identities=17% Similarity=0.383 Sum_probs=52.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
..|.+||.+||..|... .+|+.++..+|+..|+ +.++.|-.||||||||.|++.+...+
T Consensus 17 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~~~~~ 75 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEEKMEI 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHHHhhc
Confidence 78999999999999886 5999999999999999 99999999999999999876654444
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.03 E-value=3.9e-11 Score=86.33 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=50.2
Q ss_pred CCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 83 NPTQEQIGILEMLYRG--GMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~--G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
..|.+|+.+||..|.. ...+|+.+++.+|+..|+ +..+.|-+||||+|||.|+..
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccc
Confidence 3899999999999987 456999999999999998 999999999999999987753
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.03 E-value=4.6e-11 Score=95.15 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=52.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
...+.|...|++|+.+||..|... .+|+.+++.+|+..|+ +++..|.+||||||||.|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 456679999999999999999886 5999999999999999 99999999999999998864
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.02 E-value=2.8e-11 Score=97.45 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=50.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
...+.|...|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+||||||||+|++++
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccC
Confidence 456679999999999999999886 5999999999999998 9999999999999999988654
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=92.01 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=53.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
...+.|...|++|+.+||..|... .+|+.+++.+|+..|+ ++++.|.+||||||||+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 355679999999999999999885 5999999999999999 9999999999999999874
No 66
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.98 E-value=6.1e-11 Score=93.74 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=52.5
Q ss_pred cCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 75 THPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 75 t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
..+.+.|...|++|+.+||..|... .+|+.+++.+|+..|+ +.++.|.+||||||+|.|+.
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQLG----LELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHC----cCHHHhhhcChhhhcccccc
Confidence 3456789999999999999999887 5999999999999998 99999999999999987654
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.98 E-value=5.8e-11 Score=84.66 Aligned_cols=50 Identities=22% Similarity=0.529 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
.++|+.+||..|..-..+|+.+++.+|+..|+ +.+..|-.||||||+++|
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccC
Confidence 46799999999976668999999999999999 999999999999998875
No 68
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.96 E-value=6.6e-11 Score=98.82 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=54.3
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhh-------------hcCc----ccCceeeEeecccHHH
Q 027928 74 ETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLG-------------KYGK----IEGKNVFYWFQNHKAR 136 (217)
Q Consensus 74 ~t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~-------------~~G~----Ie~kNVfyWFQNrKAR 136 (217)
.....+.|..+|+.|+.+||..|... .+|+.++..+|+..|. .||. |.+..|++||||||++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 34457789999999999999999886 5999999999999998 4677 9999999999999998
Q ss_pred HHH
Q 027928 137 ERQ 139 (217)
Q Consensus 137 eRr 139 (217)
++.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 754
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.92 E-value=2.2e-10 Score=90.98 Aligned_cols=59 Identities=27% Similarity=0.401 Sum_probs=53.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQ 139 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRr 139 (217)
.+.+.|...|++|+.+||..|... .+|+.+++.+|+..|+ ++...|.+||||||||.|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHcC----CChhheeeccccccccccC
Confidence 456779999999999999999865 5999999999999998 9999999999999999875
No 70
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.89 E-value=4.5e-10 Score=81.67 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=50.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhc--C--CCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRG--G--MRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~--G--~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
..+.|-..|++|+.+|| .|.. | +.+|+.+++++|+..|+ |.+..|.+||||+||+.|
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC----cCcCcccccccccccCCC
Confidence 45678899999999999 6876 3 67999999999999998 999999999999997643
No 71
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.86 E-value=5e-10 Score=96.21 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=53.5
Q ss_pred CcccCCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhh-------------cC----cccCceeeEeecccH
Q 027928 72 QVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGK-------------YG----KIEGKNVFYWFQNHK 134 (217)
Q Consensus 72 ~v~t~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~-------------~G----~Ie~kNVfyWFQNrK 134 (217)
+......+.|..+|++|+.+||..|... .||+.++-++|+..+.. || .+.+..|++||||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 4455678889999999999999999984 69999999999999873 33 599999999999999
Q ss_pred HHH
Q 027928 135 ARE 137 (217)
Q Consensus 135 ARe 137 (217)
+++
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 764
No 72
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=78.13 Aligned_cols=52 Identities=21% Similarity=0.428 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
-|.+||.+||..|...- +|+.+++++|+..|+ +..+-|-.||||+|++.|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQ-FPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGG-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhcc
Confidence 47899999999999985 999999999999998 99999999999999988753
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.74 E-value=1.6e-09 Score=75.61 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 83 NPTQEQIGILEMLYRG--GMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~--G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
+.|.+|+.+||..|.. ...+|+.++..+|+..++ ++.+.|-.||||+|+|.+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHH
Confidence 5789999999999983 446999999999999998 9999999999999999887543
No 74
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.68 E-value=4.8e-09 Score=77.63 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=50.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccH
Q 027928 76 HPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHK 134 (217)
Q Consensus 76 ~P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrK 134 (217)
.+.+.|-..|.+||.+|+..|..-..+|+.+.+++|+++|+ +...-|..||||+|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tG----L~~~~IqVWFQNrR 60 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLD----LPKHTIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSC----CCHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC----CCHHHHHHhhccce
Confidence 45778999999999999999999336999999999999999 99999999999998
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.7e-08 Score=72.17 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHH
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKAR 136 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAR 136 (217)
+|--+|+.+||.-|.... .|+.++|++|++.|+ ++..-|-.||||+||+
T Consensus 11 ~~~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 11 NPYKDHMSVLKAYYAMNM-EPNSDELLKISIAVG----LPQEFVKEWFEQRKVY 59 (71)
T ss_dssp CSSTHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHHHHHHhhcccc
Confidence 466799999999999986 999999999999999 9999999999999973
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.15 E-value=7.5e-07 Score=67.28 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhh
Q 027928 84 PTQEQIGILEMLYRG--GMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNS 145 (217)
Q Consensus 84 PTpEQL~iLE~lY~~--G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~ 145 (217)
-+.+|+.+|+..|.. -..||+.++..+|+..++ ++.+-|-+||||+|+|.+++..+.+
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 468999999999965 467999999999999988 9999999999999999988765544
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.06 E-value=4.6e-07 Score=75.95 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHH
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARER 138 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReR 138 (217)
.-+.+|+..||..|... .+|+.++.++|+..|+ +.++.|-+||||||+|.|
T Consensus 371 ~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 371 AISPQARAFLEQVFRRK-QSLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp SSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 46789999999999776 5999999999999998 999999999999998753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.76 E-value=0.00014 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=17.8
Q ss_pred eeeEeecccHHHHHHHHHhhhc
Q 027928 125 NVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 125 NVfyWFQNrKAReRrKqrr~~l 146 (217)
-|-.|||||||+-|++++....
T Consensus 2 QVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CTTTTTTCSHHHHTSSHHHHTT
T ss_pred CceeccHHHHHHHHHHhHHHHH
Confidence 3678999999999998876543
No 79
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.63 E-value=6.5 Score=27.13 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEee
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWF 130 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWF 130 (217)
++.|..+|.+.|-.|+ -.++|++.|+ |....|..+.
T Consensus 39 ~~~~r~vl~l~~~~g~------s~~eIA~~lg----is~~tV~~~l 74 (92)
T 3hug_A 39 SAEHRAVIQRSYYRGW------STAQIATDLG----IAEGTVKSRL 74 (92)
T ss_dssp CHHHHHHHHHHHTSCC------CHHHHHHHHT----SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHH
Confidence 5788899999888887 3568888888 8888887544
No 80
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.54 E-value=2.6 Score=24.38 Aligned_cols=39 Identities=3% Similarity=0.181 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeeccc
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNH 133 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNr 133 (217)
++++...+-.+|..|+ -+.+|+..|+ |.-..|+.|....
T Consensus 7 ~~~~~~~i~~~~~~g~------s~~~IA~~lg----is~~Tv~~~~~~~ 45 (51)
T 1tc3_C 7 SDTERAQLDVMKLLNV------SLHEMSRKIS----RSRHCIRVYLKDP 45 (51)
T ss_dssp CHHHHHHHHHHHHTTC------CHHHHHHHHT----CCHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHHhhH
Confidence 4666644555677776 2568888887 8888888887544
No 81
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=59.22 E-value=2 Score=25.51 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHK 134 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrK 134 (217)
+++|+..+-.+|..|. -+.+|+..|+ |+-..|+.|+....
T Consensus 7 ~~~~~~~i~~l~~~g~------s~~~ia~~lg----vs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 7 NKHEQEQISRLLEKGH------PRQQLAIIFG----IGVSTLYRYFPASS 46 (52)
T ss_dssp CTTHHHHHHHHHHTTC------CHHHHHHTTS----CCHHHHHHHSCTTC
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----CCHHHHHHHHHHcc
Confidence 4566666666687774 2567777766 88899999987654
No 82
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=57.24 E-value=10 Score=26.81 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
=++.|..+|. +|-.|+ -.++|++.|+ |+...|..+ ..|.++|.|
T Consensus 110 L~~~~r~v~~-~~~~g~------s~~EIA~~lg----is~~tV~~~----~~ra~~~Lr 153 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRGY------SYREIATILS----KNLKSIDNT----IQRIRKKSE 153 (164)
T ss_dssp SCHHHHHHHH-HHTTTC------CHHHHHHHHT----CCHHHHHHH----HHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcCC------CHHHHHHHHC----CCHHHHHHH----HHHHHHHHH
Confidence 4677888888 787887 3467888888 888888654 444444433
No 83
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=55.49 E-value=2.4 Score=26.48 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCCCCCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeec
Q 027928 78 GGTRWNPT--QEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQ 131 (217)
Q Consensus 78 ~~~RW~PT--pEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQ 131 (217)
++-+|.-+ +++...+-.+|..|. -+.+|++.|+ |+-..|+.|+.
T Consensus 8 ~g~~~~l~~~~~~~~~i~~l~~~g~------s~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 8 QGVRYYVESEDDLVSVAHELAKMGY------TVQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp TTEEEEECSHHHHHHHHHHHHHTTC------CHHHHHHHHT----SCHHHHHHHHT
T ss_pred ccHHHHHhcCHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHHH
Confidence 34455566 788877777888886 2557888888 77777777754
No 84
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=46.35 E-value=5.7 Score=34.35 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCcee
Q 027928 79 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNV 126 (217)
Q Consensus 79 ~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNV 126 (217)
..-=.||.++|..|..- -.....++.|||..|.+.|...| |...+|
T Consensus 11 np~~~ps~d~L~~l~~~-~~Sn~vAT~eei~~I~~~l~~lG-vp~~~v 56 (226)
T 4dox_A 11 IAFPAITQEQMSSIKVD-PTSNLLPSQEQLKSVSTLMVAAK-VPAASV 56 (226)
T ss_dssp CCSCCCCHHHHHHCCCC-CCCSSSCCHHHHHHHHHHHHHTT-CCGGGH
T ss_pred CCCCCCCHHHHHHccCC-ccccCCCCHHHHHHHHHHHHHcC-CCHHHH
Confidence 33446888888887722 23455899999999999999888 665554
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.46 E-value=8.5 Score=24.40 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..+|...|-.|+ -.++|++.|+ |+..+|..+ ..|.++|-+
T Consensus 17 ~~~~r~il~l~~~~g~------s~~eIA~~lg----is~~tv~~~----~~ra~~~l~ 60 (70)
T 2o8x_A 17 TTDQREALLLTQLLGL------SYADAAAVCG----CPVGTIRSR----VARARDALL 60 (70)
T ss_dssp CHHHHHHHHHHHTSCC------CHHHHHHHHT----SCHHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHH----HHHHHHHHH
Confidence 5889999999998886 2468888888 888888754 334444443
No 86
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.56 E-value=9.6 Score=24.40 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeec
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQ 131 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQ 131 (217)
.-|+.|..+|..+ ..|+ -.++|++.|+ |+...|.++..
T Consensus 11 ~L~~~e~~il~~~-~~g~------s~~eIA~~l~----is~~tV~~~~~ 48 (74)
T 1fse_A 11 LLTKREREVFELL-VQDK------TTKEIASELF----ISEKTVRNHIS 48 (74)
T ss_dssp CCCHHHHHHHHHH-TTTC------CHHHHHHHHT----SCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCC------CHHHHHHHHC----CCHHHHHHHHH
Confidence 3578899999995 5555 2468888887 78888875443
No 87
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.03 E-value=15 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeec
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQ 131 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQ 131 (217)
=++.|..+|...|-.|+ -.++|++.|+ |+...|..+.+
T Consensus 23 L~~~~r~vl~l~y~~g~------s~~EIA~~lg----iS~~tV~~~l~ 60 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY------SLAEIADEFG----VSRQAVYDNIK 60 (113)
T ss_dssp SCHHHHHHHHHHHHTCC------CHHHHHHHHT----CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHHH
Confidence 36889999999998887 2468888888 99999987764
No 88
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.75 E-value=24 Score=24.95 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=32.0
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
+...--.-|+.|+.||..++ .|+ -.++|++.|+ |+.+.|. +|..|-.+|
T Consensus 23 ~~~~~~~Lt~rE~~Vl~l~~-~G~------s~~eIA~~L~----iS~~TV~----~~~~~i~~K 71 (90)
T 3ulq_B 23 SQKEQDVLTPRECLILQEVE-KGF------TNQEIADALH----LSKRSIE----YSLTSIFNK 71 (90)
T ss_dssp ------CCCHHHHHHHHHHH-TTC------CHHHHHHHHT----CCHHHHH----HHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHH-cCC------CHHHHHHHHC----cCHHHHH----HHHHHHHHH
Confidence 34456678999999999998 665 2568999998 8888775 344444443
No 89
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=38.22 E-value=4.9 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHH
Q 027928 91 ILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKA 135 (217)
Q Consensus 91 iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKA 135 (217)
+++.|-+.|..- --|.+|++..+ |.-..|||.|.|+.+
T Consensus 28 A~~lf~~~G~~~---~t~~~IA~~ag----vs~~tlY~~F~sK~~ 65 (216)
T 3qqa_A 28 ALELFLTKGYQE---TSLSDIIKLSG----GSYSNIYDGFKSKEG 65 (216)
T ss_dssp HHHHHHHTCTTT---CCHHHHHHHHT----TSCCSSSCSCCSHHH
T ss_pred HHHHHHHcChhh---CCHHHHHHHhC----CCHHHHHHhcCCHHH
Confidence 455666777533 34678888888 999999999999873
No 90
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.99 E-value=39 Score=26.14 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhcCCCCCCH-HHHHHHHHH
Q 027928 77 PGGTRWNPTQEQIGILEMLYRGGMRTPNA-QQIEQITAQ 114 (217)
Q Consensus 77 P~~~RW~PTpEQL~iLE~lY~~G~rtPs~-eqI~qIT~~ 114 (217)
+-.+.=.||.|||++=++|+.... |.. +.|+.|.+.
T Consensus 13 ~~~~~~~aTaeQ~rLAq~i~~~~d--~d~eekVk~L~Em 49 (104)
T 1wj7_A 13 QHKQRPQATAEQIRLAQMISDHND--ADFEEKVKQLIDI 49 (104)
T ss_dssp TTCCSSSSSHHHHHHHHHHHHSCC--HHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhcCCc--ccHHHHHHHHHHh
Confidence 344456899999999999997753 543 466666554
No 91
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=36.83 E-value=17 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=24.8
Q ss_pred CHHHHHH-HHHHhhhcCcccCceeeEeecccHH
Q 027928 104 NAQQIEQ-ITAQLGKYGKIEGKNVFYWFQNHKA 135 (217)
Q Consensus 104 s~eqI~q-IT~~L~~~G~Ie~kNVfyWFQNrKA 135 (217)
+-.+|.+ |.+.|...|.++|+||-|-|||-..
T Consensus 21 ~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~g 53 (302)
T 3lkv_A 21 ALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG 53 (302)
T ss_dssp HHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT
T ss_pred hHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCC
Confidence 3334433 7889999999999999998888653
No 92
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.58 E-value=19 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeec
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQ 131 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQ 131 (217)
++.|..+|...|-.|+ -.++|++.|+ |+...|..+..
T Consensus 27 ~~~~r~vl~l~~~~g~------s~~EIA~~lg----iS~~tV~~~l~ 63 (113)
T 1xsv_A 27 TNKQRNYLELFYLEDY------SLSEIADTFN----VSRQAVYDNIR 63 (113)
T ss_dssp CHHHHHHHHHHHTSCC------CHHHHHHHTT----CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHHH
Confidence 6789999999998887 3468888888 88888876543
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.41 E-value=15 Score=26.64 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEee
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWF 130 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWF 130 (217)
.-|+.|+.+|..++ .|+ -.++|++.|+ |+.+.|.++.
T Consensus 34 ~Lt~re~~Vl~l~~-~G~------s~~EIA~~L~----iS~~TV~~~l 70 (99)
T 1p4w_A 34 RLSPKESEVLRLFA-EGF------LVTEIAKKLN----RSIKTISSQK 70 (99)
T ss_dssp SCCHHHHHHHHHHH-HTC------CHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-cCC------CHHHHHHHHC----cCHHHHHHHH
Confidence 46889999998876 565 2368999998 8888886543
No 94
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=34.80 E-value=22 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHh
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKR 143 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr 143 (217)
++.|..+|.+.|-.|+ -+++|++.|+ |+...|. ++-.|.|++.+.
T Consensus 95 p~~~r~vl~L~~~~g~------s~~EIA~~lg----is~~tV~----~~l~rar~~Lr~ 139 (157)
T 2lfw_A 95 TPLSRQALLLTAMEGF------SPEDAAYLIE----VDTSEVE----TLVTEALAEIEK 139 (157)
T ss_dssp CTTHHHHHTTTSSSCC------CHHHHHHTTT----SCHHHHH----HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHH----HHHHHHHHHHHH
Confidence 5678899999888887 2468888888 8888885 444566666554
No 95
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.11 E-value=38 Score=25.47 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..||.+.|-.|+ -.++|+..|+ |+..+|.. +..|.++|.|
T Consensus 189 ~~~~r~vl~l~~~~g~------s~~EIA~~lg----is~~~V~~----~~~ra~~~Lr 232 (239)
T 1rp3_A 189 PEREKLVIQLIFYEEL------PAKEVAKILE----TSVSRVSQ----LKAKALERLR 232 (239)
T ss_dssp CHHHHHHHHHHHTSCC------CHHHHHHHTT----SCHHHHHH----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC------CHHHHHHHhC----CCHHHHHH----HHHHHHHHHH
Confidence 5677788888887776 2457888887 88888854 3344444443
No 96
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.79 E-value=42 Score=21.92 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYR----GGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~----~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..||...|- .|+ -.++|++.|+ |+...|..+ ..|.++|.+
T Consensus 12 ~~~er~il~l~~~l~~~~~~------s~~eIA~~l~----is~~tV~~~----~~ra~~kLr 59 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREH------TLEEVGAYFG----VTRERIRQI----ENKALRKLK 59 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCC------CHHHHHHHHT----CCHHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCC------CHHHHHHHHC----CCHHHHHHH----HHHHHHHHH
Confidence 6789999999996 554 2457888887 888888754 344444444
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.61 E-value=16 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEe
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYW 129 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyW 129 (217)
|+.|..+|..+ -.|+ ..++|++.|+ |+...|.++
T Consensus 18 ~~~e~~vl~l~-~~g~------s~~eIA~~l~----is~~tV~~~ 51 (79)
T 1x3u_A 18 SERERQVLSAV-VAGL------PNKSIAYDLD----ISPRTVEVH 51 (79)
T ss_dssp CHHHHHHHHHH-TTTC------CHHHHHHHTT----SCHHHHHHH
T ss_pred CHHHHHHHHHH-HcCC------CHHHHHHHHC----cCHHHHHHH
Confidence 67899999884 5565 2458888887 788887643
No 98
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.57 E-value=19 Score=25.24 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
=|+.|..+|..+ ..|+ -.++|++.|+ |+...|.+ |..|-++|.+
T Consensus 28 Lt~~e~~vl~l~-~~g~------s~~eIA~~l~----is~~tV~~----~l~r~~~kL~ 71 (95)
T 3c57_A 28 LTDQERTLLGLL-SEGL------TNKQIADRMF----LAEKTVKN----YVSRLLAKLG 71 (95)
T ss_dssp CCHHHHHHHHHH-HTTC------CHHHHHHHHT----CCHHHHHH----HHHHHHHHHT
T ss_pred CCHHHHHHHHHH-HcCC------CHHHHHHHHC----cCHHHHHH----HHHHHHHHHc
Confidence 578899999997 5555 2468899988 88888864 4555555554
No 99
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.72 E-value=17 Score=25.65 Aligned_cols=41 Identities=2% Similarity=0.139 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccH
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHK 134 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrK 134 (217)
-|+++...+-.+|..|. -+.+|+..|+ |.-+-|+.|++.-+
T Consensus 7 ~s~~~r~~i~~~~~~G~------s~~~ia~~lg----is~~Tv~r~~~~~~ 47 (141)
T 1u78_A 7 LSDTERAQLDVMKLLNV------SLHEMSRKIS----RSRHCIRVYLKDPV 47 (141)
T ss_dssp CCHHHHHHHHHHHHTTC------CHHHHHHHHT----CCHHHHHHHHHSGG
T ss_pred CCHHHHHHHHHHHHcCC------CHHHHHHHHC----cCHHHHHHHHHccc
Confidence 36777777777788886 2567888876 89999999987543
No 100
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.52 E-value=18 Score=24.71 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHH
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQK 140 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrK 140 (217)
.-|+.|..+|..+ ..|+ -.++|++.|+ |+...|.+ |..|-++|
T Consensus 21 ~Lt~~e~~vl~l~-~~g~------s~~eIA~~l~----is~~tV~~----~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKLI-AQGL------PNKMIARRLD----ITESTVKV----HVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHHH-TTTC------CHHHHHHHHT----SCHHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCC------CHHHHHHHHC----cCHHHHHH----HHHHHHHH
Confidence 4578899999995 5565 3568888887 88888764 44444444
No 101
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.98 E-value=52 Score=21.79 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 027928 82 WNPTQEQIGILEMLYRGGMRTPNAQQIEQIT 112 (217)
Q Consensus 82 W~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT 112 (217)
...|+.++.||+.|...+...++.++|.+..
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l 43 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRL 43 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 3578999999999987642357776655443
No 102
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=29.51 E-value=18 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHH
Q 027928 92 LEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKA 135 (217)
Q Consensus 92 LE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKA 135 (217)
++.|-+.|. ..--|.+|++..+ |.-..|||.|.|+.+
T Consensus 53 ~~lf~~~G~---~~~t~~~IA~~aG----vs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 53 ENLLEDRPL---ADISVDDLAKGAG----ISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHTTSCG---GGCCHHHHHHHHT----CCHHHHHHHCSSHHH
T ss_pred HHHHHHcCC---ccCcHHHHHHHhC----CCHHHHHHHcCCHHH
Confidence 334445564 2334778888888 999999999999874
No 103
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.89 E-value=69 Score=23.67 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceee
Q 027928 82 WNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVF 127 (217)
Q Consensus 82 W~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVf 127 (217)
...|+..+.||+.|...+..-+++++|-+.... .+..|.-.-||
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~--~~~~is~aTVY 57 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALME--AGEDVGLATVY 57 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHH--TTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHh--hCCCCCHHHHH
Confidence 468999999999999765357898777654332 23345555555
No 104
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.98 E-value=67 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 027928 82 WNPTQEQIGILEMLYRG----GMRTPNAQQIEQITA 113 (217)
Q Consensus 82 W~PTpEQL~iLE~lY~~----G~rtPs~eqI~qIT~ 113 (217)
|.-|++|+..+..+|+. |.++=+.+++..+-.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~ 36 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFT 36 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 88899999999999964 555556666555543
No 105
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.74 E-value=68 Score=24.17 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhh-cCcccCceee
Q 027928 81 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGK-YGKIEGKNVF 127 (217)
Q Consensus 81 RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~-~G~Ie~kNVf 127 (217)
-..+|+..+.|||.|...+ .|++++|-+ .|+. +..|.-.-||
T Consensus 14 g~r~T~qR~~Il~~l~~~~--h~ta~ei~~---~l~~~~~~is~~TVY 56 (145)
T 3eyy_A 14 GYRLTPQRQLVLEAVDTLE--HATPDDILG---EVRKTASGINISTVY 56 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHS--SBCHHHHHH---HHHTTCTTCCHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcC--CCCHHHHHH---HHHhhCCCCCHhHHH
Confidence 3568999999999999876 788877654 3432 2234444444
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.53 E-value=62 Score=22.05 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHh----cCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYR----GGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~----~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..||...|- .|+ -.++|++.|+ |+...|.. +..|.++|.+
T Consensus 20 ~~~er~vl~l~~~l~~~~~~------s~~EIA~~lg----is~~tV~~----~~~ra~~kLr 67 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPK------TLEEVGQYFN----VTRERIRQ----IEVKALRKLR 67 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCC------CHHHHHHHHT----CCHHHHHH----HHHHHHHHHB
T ss_pred CHHHHHHHHHHHccCCCCCC------CHHHHHHHHC----CCHHHHHH----HHHHHHHHHH
Confidence 5778999999996 554 2457888887 88887764 3445555544
No 107
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.47 E-value=99 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceee
Q 027928 81 RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVF 127 (217)
Q Consensus 81 RW~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVf 127 (217)
-...|+..+.|||.|...+ +-||+++|-+....-..+-.|+-.-||
T Consensus 28 g~r~T~qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVY 73 (162)
T 4ets_A 28 GLKYTKQREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVY 73 (162)
T ss_dssp TCCCCHHHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHH
Confidence 3567999999999999876 589998775543221002345545555
No 108
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=23.39 E-value=17 Score=30.47 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhhcCcc
Q 027928 83 NPTQEQIGILEMLYRG--GMRTPNAQQIEQITAQLGKYGKI 121 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~--G~rtPs~eqI~qIT~~L~~~G~I 121 (217)
.|||-||+-|-++=.. |. -|..++|.+||.+|-..=+|
T Consensus 107 ~~tP~ql~~l~~~Etal~Gv-C~dk~ev~eITk~lPpV~p~ 146 (167)
T 2f8v_T 107 EDTPIQLQELLALETALGGQ-SVDRQEVAEITKQLPPVVPV 146 (167)
T ss_dssp -----------------------------------------
T ss_pred CCCcHHHHHHHHHHHhhcCc-CccHHHHHHHHhhCCCcccc
Confidence 5789998877333322 54 89999999999998744444
No 109
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.33 E-value=27 Score=24.64 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=27.1
Q ss_pred CChHHHH--HHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHH
Q 027928 84 PTQEQIG--ILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKA 135 (217)
Q Consensus 84 PTpEQL~--iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKA 135 (217)
-|.++|. .++.+-+.|. ..--|.+|++..+ |.-..|||.|.|+.+
T Consensus 12 ~~r~~Il~aA~~lf~~~G~---~~~t~~~IA~~ag----vs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGV---DGLSLRQLAREAG----VSHAAPSKHFRDRQA 58 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHTC---------CCCSSSSHHH
T ss_pred HHHHHHHHHHHHHHHhcCh---hhhhHHHHHHHhC----CChHHHHHHhCCHHH
Confidence 3455542 4555657775 2234678889888 999999999999764
No 110
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.26 E-value=92 Score=23.31 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhh-cCcccCceee
Q 027928 82 WNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGK-YGKIEGKNVF 127 (217)
Q Consensus 82 W~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~-~G~Ie~kNVf 127 (217)
...|+..+.||+.|...+ ..+++++|-+ .|+. +..|.-.-||
T Consensus 18 ~r~T~qR~~Il~~L~~~~-~~~sa~ei~~---~l~~~~~~is~aTVY 60 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSM-AHPTADDIYK---ALEGKFPNMSVATVY 60 (145)
T ss_dssp CCCCHHHHHHHHHHHHCS-SCCCHHHHHH---HHGGGCTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC-CCCCHHHHHH---HHHHhCCCCChhhHH
Confidence 468999999999999865 4789877654 4442 3345555555
No 111
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.02 E-value=20 Score=24.59 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHH
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 141 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKq 141 (217)
-|+.|..+|..+ ..|+ . .++|+..|+ |+...|.+ |..|-++|.
T Consensus 30 Lt~~e~~vl~l~-~~g~--s----~~eIA~~l~----is~~tV~~----~l~r~~~kL 72 (91)
T 2rnj_A 30 LTEREMEILLLI-AKGY--S----NQEIASASH----ITIKTVKT----HVSNILSKL 72 (91)
T ss_dssp CCSHHHHHHHHH-HTTC--C----TTHHHHHHT----CCHHHHHH----HHHHHHHHT
T ss_pred CCHHHHHHHHHH-HcCC--C----HHHHHHHHC----cCHHHHHH----HHHHHHHHH
Confidence 467888999885 5565 2 247888887 78888764 444444443
No 112
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=21.58 E-value=83 Score=27.69 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHHhhhc
Q 027928 84 PTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSL 146 (217)
Q Consensus 84 PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqrr~~l 146 (217)
-+++|...|..+|.++. .+.+++++|.+.+..+|-|+-.. ..|++-..+....+
T Consensus 262 ~~~~~~~~L~~~l~~~~--~~~~~~~~i~~li~~~gai~~a~-------~~a~~~~~~A~~~L 315 (358)
T 4dhd_A 262 LGEGERRRLLEILAREV--VEEADVREAVALLDSVGAREEAL-------RLAARYREEAERHL 315 (358)
T ss_dssp SCHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHTTTHHHHHH-------HHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHcCCC--CCHHHHHHHHHHHHHcChHHHHH-------HHHHHHHHHHHHHH
Confidence 35788999999997764 78899999999999999887553 34455555555554
No 113
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=21.54 E-value=25 Score=28.56 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHhhhcCcccCceeeEeecccH
Q 027928 101 RTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHK 134 (217)
Q Consensus 101 rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrK 134 (217)
...+.+||..|.+.|..+.+. ++=.||-||+
T Consensus 59 ~~Lt~~ei~~l~~~i~~p~~~---~iP~w~lNr~ 89 (155)
T 2xzm_M 59 GLLTEDQCNKITDLIADPEAH---GIPTWLLNRI 89 (155)
T ss_dssp SCSCHHHHHHHHHHHHSHHHH---CCCGGGCSEE
T ss_pred ccCCHHHHHHHHHHHhCcccc---CCCHHHhhcc
Confidence 457788999999888753332 5668999974
No 114
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=21.54 E-value=1.1e+02 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhhhc
Q 027928 84 PTQEQIGILEMLY-RGGMRTPNAQQIEQITAQLGKY 118 (217)
Q Consensus 84 PTpEQL~iLE~lY-~~G~rtPs~eqI~qIT~~L~~~ 118 (217)
+.+||+..+-.+| ..+-|-|+.+|.+.|+++-+++
T Consensus 171 apeef~~ava~v~~en~GrGPdq~qMqdl~~l~~~~ 206 (242)
T 3zed_D 171 APDDFYQAVVEVFAENGGRGPDQDQMQDLRDLARQM 206 (242)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 4579999999988 4455789999999997664433
No 115
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=21.39 E-value=84 Score=24.36 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcC
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYG 119 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G 119 (217)
+...|+ +.|=+-....|+.++|+++++.|.+.|
T Consensus 67 ~~~dI~--~~It~vT~~~P~~eDi~RV~arLaa~G 99 (107)
T 3ol3_A 67 TDDDIR--NAVHQIIEKEPTAEEINQVAARLASVG 99 (107)
T ss_dssp CHHHHH--HHHHHHHSSCCCHHHHHHHHHHHHTTT
T ss_pred CHHHHH--HHHHHHhcCCcCHHHHHHHHHHHHhcC
Confidence 344444 344455556799999999999999888
No 116
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.36 E-value=40 Score=24.75 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..+|.+.|-.|+ -.++|++.|+ |+...|..+ ..|.++|.|
T Consensus 142 ~~~~r~vl~l~~~~g~------s~~EIA~~lg----is~~tV~~~----l~ra~~~Lr 185 (194)
T 1or7_A 142 PEDLRMAITLRELDGL------SYEEIAAIMD----CPVGTVRSR----IFRAREAID 185 (194)
T ss_dssp CHHHHHHHHHHHTTCC------CHHHHHHHTT----SCHHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHhHHHHHcCC------CHHHHHHHHC----CCHHHHHHH----HHHHHHHHH
Confidence 4677888888887776 2458888888 888888654 445555544
No 117
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.36 E-value=59 Score=26.12 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 83 NPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 83 ~PTpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
.-++.|..+|...| .|+ -.++|++.|+ |+...|. +|..|-++|.+
T Consensus 197 ~L~~~erevl~L~~-~G~------s~~EIA~~L~----iS~~TVk----~~l~ra~~kL~ 241 (258)
T 3clo_A 197 ILSEREKEILRCIR-KGL------SSKEIAATLY----ISVNTVN----RHRQNILEKLS 241 (258)
T ss_dssp SSCHHHHHHHHHHH-TTC------CHHHHHHHHT----CCHHHHH----HHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHH-cCC------CHHHHHHHHC----cCHHHHH----HHHHHHHHHHc
Confidence 46789999999985 666 2568999998 8888885 45556666544
No 118
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.19 E-value=79 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHh------cCCCCCCHHHHHHHHHHhh
Q 027928 85 TQEQIGILEMLYR------GGMRTPNAQQIEQITAQLG 116 (217)
Q Consensus 85 TpEQL~iLE~lY~------~G~rtPs~eqI~qIT~~L~ 116 (217)
|++||..|.++|. .|.++=+.+++..+-..|+
T Consensus 4 t~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG 41 (159)
T 3i5g_C 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLG 41 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcC
Confidence 7899999998874 4667777777666554443
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.10 E-value=17 Score=26.61 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHHHHHHHHH
Q 027928 85 TQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQK 142 (217)
Q Consensus 85 TpEQL~iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKAReRrKqr 142 (217)
++.|..+|.+.|-.|+ + +++|++.|+ |+...|. ++..|.++|.|
T Consensus 137 ~~~~r~vl~l~~~~g~--s----~~eIA~~lg----is~~tV~----~~l~ra~~~Lr 180 (184)
T 2q1z_A 137 PEAQRALIERAFFGDL--T----HRELAAETG----LPLGTIK----SRIRLALDRLR 180 (184)
T ss_dssp CHHHHHHHHHHHHSCC--S----SCCSTTTCC----CCCHHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHH----HHHHHHHHHHH
Confidence 3555666666666665 1 125666665 7777774 44445555544
No 120
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=20.71 E-value=44 Score=26.35 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=34.1
Q ss_pred CCCCCCCCChHHHH--HHHHHHhcCCCCCCHHHHHHHHHHhhhcCcccCceeeEeecccHH
Q 027928 77 PGGTRWNPTQEQIG--ILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKA 135 (217)
Q Consensus 77 P~~~RW~PTpEQL~--iLE~lY~~G~rtPs~eqI~qIT~~L~~~G~Ie~kNVfyWFQNrKA 135 (217)
+...|-.-|.++|. .++.+-+.|..-- -+.+|++.++ |.-..||+.|.|+.+
T Consensus 22 ~~~~~~~~tr~~Il~aA~~l~~~~G~~~~---s~~~IA~~aG----vs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 22 HMAGRRRWSTEQILDAAAELLLAGDAETF---SVRKLAASLG----TDSSSLYRHFRNKTE 75 (241)
T ss_dssp ------CCCHHHHHHHHHHHHSSSSCCCC---CHHHHHHHTT----SCHHHHHHHTSSHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHhcCcccC---CHHHHHHHhC----cCHHHHHHHcCCHHH
Confidence 34456667777763 5555657775333 3678888988 999999999999764
Done!