BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027929
(217 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 12 VLPTRVPLMTNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL---HVRQTSVLY 68
+ + V + + R + + +DL+++ + ++ L PG +V L + + + Y
Sbjct: 53 IAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFY 112
Query: 69 GADWGFINNTENRNDDEGG----WG---GIQ----LDSTETDLTATNAKNIAEPLEEAGL 117
N ++ D+G WG G + L S E LTAT+ ++A PL G
Sbjct: 113 --------NLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATDTVDVAMPLNFTGG 164
Query: 118 QYKIHIVKDHDMKERLCLEVERL 140
Q + ++ + L L VE L
Sbjct: 165 QLHSRMFQNFPTELLLSLAVEPL 187
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 291 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 335
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 291 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 335
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 291 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 335
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 291 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 335
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 295 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 339
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA 115
WG+ N + + DD E GW GIQ + L + + I P+ E
Sbjct: 291 WGWTNESSSVEDDVEKGWSGIQTIPRKIWLDRSGKQLIQWPVREV 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,375,092
Number of Sequences: 62578
Number of extensions: 188173
Number of successful extensions: 324
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 8
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)