BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027929
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 28/159 (17%)
Query: 30 IAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWG 89
+ +DLS ES +A WAV LR GD ++++ V + D ++R + E
Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIE------CDDPSARAVKDRMESE---- 484
Query: 90 GIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHI-VKDHDMKERLCLE-VERLGLSAMIM 147
QL++ E K I + L + L+ +++I V H+ + L +E ++ + S ++M
Sbjct: 485 --QLETLEKI-----TKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVM 537
Query: 148 GGRGIGIGAVRRSSVG--RLGSVSDYCVHHCVCPVVVLR 184
G RG RS + LGS S+Y V+ PV+V R
Sbjct: 538 GSRG-------RSHLKGVLLGSFSNYLVNKSSVPVMVAR 569
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 124 VKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183
+K D K+ +C EV+R+ +++G RG+G R +G+VS +CV H CPV+ +
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLG-----RFQKVFVGTVSAFCVKHAECPVMTI 161
Query: 184 R 184
+
Sbjct: 162 K 162
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 35/176 (19%)
Query: 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV---RQTSVLYGADWGFINNTENRN 82
+ I IAVD S E+ +A AV+ R + +++V R S D F ++N +
Sbjct: 5 KSILIAVDGSHEAEWAFNKAVDVAKRNDAKLTVVNVIDSRTYSSYEVYDAQFTEKSKNFS 64
Query: 83 DDE-GGWGGIQLDSTETDLTATNA--KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER 139
DD G+ + ATNA KN+ LE + I ++L +V+
Sbjct: 65 DDLLKGYKEV----------ATNAGVKNVETRLEFGSPKAII--------PKKLATDVD- 105
Query: 140 LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR---YPDDSRSQ 192
+ +IM G G+ AV R VG SVS+ V H C V+V+R P+D + Q
Sbjct: 106 ---ADLIMCGTS-GLNAVERFIVG---SVSEAIVRHSPCDVLVVRTEELPEDFQPQ 154
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 19 LMTNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADW--GFIN 76
++ + + I + VD S ES AVRWA + L+HV V+ W G
Sbjct: 1 MVQSATEYGILVGVDSSAESDAAVRWAAREASLHDAPITLMHVIAPVVV---SWPAGPYM 57
Query: 77 NTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLEEA-GLQYKIHIVKDHDMKERLCL 135
T +E I+ K +A+ L E GL + I K+ R +
Sbjct: 58 ATVLECQEENARHAIE----------QAQKVVADCLGETHGLTVQTEIRKES--VARTLI 105
Query: 136 EVERLGLSAMIMGGRGIGIGAVRRSSVGR--LGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193
+ + +++G RG+G ++GR LGS S +H+ PVVV+ D ++ H
Sbjct: 106 DASK-SAQMVVVGNRGMG-------ALGRVLLGSTSTSLLHYASGPVVVVH--GDDQAAH 155
Query: 194 DSR 196
DSR
Sbjct: 156 DSR 158
>sp|Q39692|INV2_DAUCA Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Daucus carota
GN=INV2 PE=3 SV=1
Length = 592
Score = 33.9 bits (76), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEAGL 117
WG+ N ++++ DD + GW GIQL + L + I P+EE L
Sbjct: 343 WGWANESDSKQDDVQKGWAGIQLIPRKLWLDPNGKQLIQWPIEEIQL 389
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ-----TSVLYGADW---GFINNT 78
K+ +A+D SD SA A+ AV + +LHV + TS L G + FI+
Sbjct: 4 KMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVPEHFIDEI 63
Query: 79 ENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVE 138
N EG L E NAK E E G+Q + E L E
Sbjct: 64 RNEVKKEG------LKILE------NAK---EKAAEKGVQAETIYANGEPAHEILNHAKE 108
Query: 139 RLGLSAMIMGGRGI-GIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184
+ G+S +++G RGI G+ + LGSVS CPV+++R
Sbjct: 109 K-GVSLIVVGSRGISGLKEM------MLGSVSHKVSQLSTCPVLIVR 148
>sp|P32351|IMPX_YEAST Sugar utilization regulatory protein IMP2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP2' PE=1
SV=2
Length = 346
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 19 LMTNGA------QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLH 60
L+T GA QR + DLS ES YA+ + + + GD V ++H
Sbjct: 197 LLTKGAGAEAGNQRSFILYTDLSSESTYALTYLMGAAVNQGDTVYIVH 244
>sp|Q39693|INV3_DAUCA Beta-fructofuranosidase, insoluble isoenzyme 3 OS=Daucus carota
GN=INV3 PE=3 SV=1
Length = 583
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 72 WGFINNTENRNDD-EGGWGGIQLDSTETDLTATNAKNIAEPLEEA-GLQ-YKIHIVKDHD 128
WG+ N ++++ DD + GW GIQL L + + + P+EE GL+ ++H+ +
Sbjct: 336 WGWANESDSQIDDVQKGWAGIQLIPRRIWLDPSGRQLVQWPIEEVEGLRGSELHM---RN 392
Query: 129 MKERLCLEVERLGLSA 144
K + + VE G++A
Sbjct: 393 QKLDMGVHVEVTGITA 408
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDD 84
Q + + VD S ES A W + + ++HV V A W + E
Sbjct: 7 QHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADV---ATWPPMPYPET---- 59
Query: 85 EGGWGGIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSA 144
WG Q D E NA +A+ E G K+ + + + VE +
Sbjct: 60 ---WGVWQED--EGRQIVANAVKLAK--EAVGADRKLSVKSELVFSTPVPTMVEISNEAE 112
Query: 145 MIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189
M++ G G GA+ R G LGSVS V CPV V+ + DD+
Sbjct: 113 MVVLGSS-GRGALAR---GLLGSVSSSLVRRAGCPVAVI-HSDDA 152
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDD 84
Q + + VD S ES A W + + ++HV V A W + E
Sbjct: 7 QHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVVHVVNADV---ATWPPMPYPET---- 59
Query: 85 EGGWGGIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSA 144
WG Q D E NA +A+ E G K+ + + + VE +
Sbjct: 60 ---WGVWQED--EGRQIVANAVKLAK--EAVGADRKLSVKSELVFSTPVPTMVEISNEAE 112
Query: 145 MIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189
M++ G G GA+ R G LGSVS V CPV V+ + DD+
Sbjct: 113 MVVLGSS-GRGALAR---GLLGSVSSSLVRRAGCPVAVI-HSDDA 152
>sp|Q5XF57|Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670
OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
Length = 579
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 27 KIAIAVDL-SDESAYAVRWAVENYLRPGDAVVLLHV 61
KI +A+ L DES + WA+ +P D VV LH+
Sbjct: 11 KILVAISLDRDESQNVLSWAINVLAKPSDTVVALHL 46
>sp|Q88WG8|FABH2_LACPL 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2
OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB
8826 / WCFS1) GN=fabH2 PE=3 SV=1
Length = 328
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL-----------HVRQTSVLYGAD 71
GA++ IA ++++ V YL+PG +L+ H R T+VL+G
Sbjct: 100 GAEKAIAFDINVACAGFVYGMQLVHQYLQPGQTALLIGSETLSRLVDWHDRSTAVLFGDG 159
Query: 72 WGFINNTENRNDDEGGWGG 90
G + T N G W G
Sbjct: 160 AGGLLITAKPNTTTGHWLG 178
>sp|Q0B1N7|CH603_BURCM 60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244
/ AMMD) GN=groL3 PE=3 SV=1
Length = 540
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 9 DRPVLPTRVPLMTNG-AQRKIAIAVDLS--------DESAYAVRWAVENYLRPGDAVVLL 59
DR L RV + G A K+ A ++ D++ +A R AVE + PG V LL
Sbjct: 361 DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420
Query: 60 HVRQTSV-LYGAD 71
R T+ L GA+
Sbjct: 421 RARSTATSLKGAN 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,248,743
Number of Sequences: 539616
Number of extensions: 3726015
Number of successful extensions: 10242
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10226
Number of HSP's gapped (non-prelim): 28
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)