Query 027929
Match_columns 217
No_of_seqs 128 out of 1642
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 5.2E-25 1.1E-29 165.7 14.7 140 24-184 1-142 (142)
2 cd01989 STK_N The N-terminal d 99.9 1.2E-24 2.6E-29 164.2 15.3 143 27-186 1-146 (146)
3 PRK15005 universal stress prot 99.9 2.4E-24 5.3E-29 162.0 15.2 142 24-184 1-144 (144)
4 PRK09982 universal stress prot 99.9 2.7E-23 5.8E-28 156.6 13.0 141 23-187 1-141 (142)
5 PRK15118 universal stress glob 99.9 9.8E-23 2.1E-27 153.5 13.5 139 23-186 1-140 (144)
6 PF00582 Usp: Universal stress 99.9 1.9E-22 4E-27 148.9 12.3 140 24-184 1-140 (140)
7 cd01988 Na_H_Antiporter_C The 99.9 1E-21 2.2E-26 145.1 15.8 132 27-184 1-132 (132)
8 PRK10116 universal stress prot 99.9 9.5E-22 2.1E-26 147.6 14.1 140 23-187 1-141 (142)
9 PRK11175 universal stress prot 99.9 5.7E-22 1.2E-26 166.8 13.5 148 23-187 1-148 (305)
10 cd01987 USP_OKCHK USP domain i 99.9 1.2E-20 2.5E-25 138.5 12.6 123 27-184 1-124 (124)
11 PRK11175 universal stress prot 99.8 1.3E-18 2.8E-23 146.4 14.4 144 23-187 150-302 (305)
12 cd00293 USP_Like Usp: Universa 99.8 5.3E-18 1.1E-22 123.6 14.7 130 27-183 1-130 (130)
13 COG0589 UspA Universal stress 99.8 1.5E-17 3.2E-22 125.3 16.5 150 22-186 2-153 (154)
14 PRK12652 putative monovalent c 99.5 1.5E-13 3.3E-18 117.5 13.6 140 22-186 2-152 (357)
15 PRK10490 sensor protein KdpD; 99.3 4.5E-11 9.7E-16 114.1 15.5 128 23-187 248-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.2 4.8E-10 1E-14 102.7 14.1 133 22-189 245-378 (890)
17 cd01984 AANH_like Adenine nucl 98.5 9.4E-07 2E-11 60.4 7.5 84 28-182 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.6 0.0017 3.7E-08 62.1 14.7 155 22-188 455-618 (832)
19 PLN03159 cation/H(+) antiporte 97.4 0.015 3.3E-07 55.7 17.9 42 23-64 628-669 (832)
20 TIGR02432 lysidine_TilS_N tRNA 96.8 0.02 4.4E-07 44.7 10.4 93 27-151 1-109 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.4 0.05 1.1E-06 42.3 10.3 93 27-151 1-106 (182)
22 cd01992 PP-ATPase N-terminal d 95.7 0.14 3E-06 39.6 9.8 36 27-62 1-36 (185)
23 COG0041 PurE Phosphoribosylcar 94.7 0.32 6.8E-06 36.7 8.2 71 107-190 20-93 (162)
24 PRK12342 hypothetical protein; 94.1 0.54 1.2E-05 38.8 9.2 81 33-151 32-119 (254)
25 cd01993 Alpha_ANH_like_II This 94.0 0.5 1.1E-05 36.3 8.6 36 27-62 1-38 (185)
26 TIGR01162 purE phosphoribosyla 93.8 0.58 1.3E-05 35.6 8.3 71 105-188 14-87 (156)
27 PF01012 ETF: Electron transfe 93.8 0.63 1.4E-05 35.4 8.7 88 27-151 1-100 (164)
28 PRK07313 phosphopantothenoylcy 93.7 0.45 9.7E-06 37.2 7.7 34 25-59 1-34 (182)
29 PRK13982 bifunctional SbtC-lik 93.5 1.1 2.4E-05 40.3 10.7 125 22-189 67-192 (475)
30 TIGR00591 phr2 photolyase PhrI 93.2 0.82 1.8E-05 40.9 9.7 96 28-150 25-122 (454)
31 PF00731 AIRC: AIR carboxylase 93.0 0.85 1.8E-05 34.5 7.9 71 105-188 16-89 (150)
32 PF00875 DNA_photolyase: DNA p 92.7 1 2.2E-05 34.2 8.3 118 33-185 8-125 (165)
33 PRK10696 tRNA 2-thiocytidine b 92.7 2.8 6.1E-05 34.5 11.5 40 23-62 27-68 (258)
34 PRK03359 putative electron tra 92.6 1.1 2.3E-05 37.1 8.8 31 33-63 33-64 (256)
35 PRK06029 3-octaprenyl-4-hydrox 92.5 1.3 2.8E-05 34.8 8.7 35 25-59 1-35 (185)
36 TIGR02113 coaC_strep phosphopa 92.4 0.91 2E-05 35.3 7.7 33 26-59 1-33 (177)
37 PF02441 Flavoprotein: Flavopr 92.2 0.24 5.3E-06 36.2 4.1 112 26-185 1-118 (129)
38 PRK05579 bifunctional phosphop 92.1 1.3 2.9E-05 38.9 9.3 122 23-188 4-127 (399)
39 COG0037 MesJ tRNA(Ile)-lysidin 91.8 3.6 7.7E-05 34.3 11.3 37 25-63 21-57 (298)
40 cd01985 ETF The electron trans 91.0 5.3 0.00011 30.8 10.8 34 27-61 1-43 (181)
41 PLN02496 probable phosphopanto 90.5 3 6.4E-05 33.4 8.9 35 23-59 17-51 (209)
42 TIGR00521 coaBC_dfp phosphopan 90.4 2.8 6.1E-05 36.8 9.6 123 24-189 2-124 (390)
43 PRK10660 tilS tRNA(Ile)-lysidi 89.2 3.1 6.7E-05 37.1 9.0 39 24-62 14-53 (436)
44 TIGR03556 photolyase_8HDF deox 89.0 4 8.6E-05 36.8 9.7 90 33-150 10-99 (471)
45 TIGR02765 crypto_DASH cryptoch 88.3 6 0.00013 35.0 10.3 96 33-150 10-105 (429)
46 PLN00200 argininosuccinate syn 88.2 1.6 3.4E-05 38.5 6.4 37 23-62 3-39 (404)
47 COG2086 FixA Electron transfer 88.2 4.6 9.9E-05 33.5 8.7 103 32-182 33-143 (260)
48 TIGR00268 conserved hypothetic 88.2 7.1 0.00015 32.0 10.0 35 24-62 11-45 (252)
49 PRK05253 sulfate adenylyltrans 87.1 12 0.00026 31.7 10.9 38 25-62 27-64 (301)
50 PF00448 SRP54: SRP54-type pro 85.1 11 0.00023 29.8 9.1 93 28-160 5-100 (196)
51 COG0552 FtsY Signal recognitio 84.3 19 0.00042 30.9 10.7 99 22-160 137-238 (340)
52 TIGR02852 spore_dpaB dipicolin 84.3 11 0.00024 29.6 8.7 34 26-60 1-35 (187)
53 TIGR00342 thiazole biosynthesi 83.7 20 0.00043 31.2 11.0 37 22-62 169-205 (371)
54 PRK13820 argininosuccinate syn 83.3 22 0.00048 31.3 11.1 36 24-62 1-37 (394)
55 cd01994 Alpha_ANH_like_IV This 83.0 13 0.00028 29.3 8.7 33 27-63 1-33 (194)
56 PLN02948 phosphoribosylaminoim 82.7 7.9 0.00017 35.9 8.4 72 104-188 425-499 (577)
57 PRK10674 deoxyribodipyrimidine 82.2 19 0.0004 32.5 10.5 92 33-150 11-105 (472)
58 PF02601 Exonuc_VII_L: Exonucl 81.9 5.6 0.00012 33.7 6.8 55 122-183 49-113 (319)
59 PF03746 LamB_YcsF: LamB/YcsF 80.5 24 0.00053 28.9 9.6 108 26-151 28-145 (242)
60 PF02887 PK_C: Pyruvate kinase 80.1 4.2 9.2E-05 29.0 4.7 44 129-186 4-48 (117)
61 TIGR02039 CysD sulfate adenyly 80.0 24 0.00053 29.8 9.8 38 25-62 19-56 (294)
62 cd01990 Alpha_ANH_like_I This 79.9 27 0.00058 27.2 9.6 32 28-62 1-32 (202)
63 COG0299 PurN Folate-dependent 79.4 29 0.00063 27.5 9.9 83 26-149 1-87 (200)
64 cd01713 PAPS_reductase This do 77.6 26 0.00056 25.9 10.3 35 27-62 1-35 (173)
65 PRK12563 sulfate adenylyltrans 77.1 27 0.00058 29.8 9.2 39 24-62 36-74 (312)
66 TIGR02699 archaeo_AfpA archaeo 76.3 19 0.00041 27.9 7.5 33 27-59 1-34 (174)
67 cd01712 ThiI ThiI is required 75.6 33 0.00072 26.1 10.5 33 27-63 1-33 (177)
68 TIGR02766 crypt_chrom_pln cryp 75.2 38 0.00082 30.5 10.3 90 33-150 7-96 (475)
69 cd01995 ExsB ExsB is a transcr 74.9 34 0.00073 25.8 9.7 32 27-62 1-32 (169)
70 COG0415 PhrB Deoxyribodipyrimi 74.3 33 0.00072 30.9 9.4 89 33-150 11-99 (461)
71 PF02844 GARS_N: Phosphoribosy 74.1 3.3 7.1E-05 29.1 2.6 22 130-151 51-72 (100)
72 PRK00919 GMP synthase subunit 73.8 17 0.00038 30.8 7.3 35 26-63 22-56 (307)
73 COG1646 Predicted phosphate-bi 73.7 23 0.0005 28.8 7.5 58 128-192 28-85 (240)
74 cd01986 Alpha_ANH_like Adenine 73.5 27 0.00058 24.0 8.3 31 28-62 1-31 (103)
75 COG0541 Ffh Signal recognition 73.0 56 0.0012 29.2 10.3 97 24-160 100-199 (451)
76 KOG1650 Predicted K+/H+-antipo 72.9 17 0.00036 35.0 7.7 43 24-66 613-655 (769)
77 PRK10867 signal recognition pa 71.6 41 0.00089 30.1 9.4 35 27-61 103-137 (433)
78 PRK11914 diacylglycerol kinase 71.4 20 0.00042 30.1 7.2 73 110-194 33-105 (306)
79 PF04459 DUF512: Protein of un 71.1 26 0.00056 27.9 7.3 68 115-187 123-203 (204)
80 PRK13010 purU formyltetrahydro 71.1 42 0.0009 28.3 8.9 85 23-150 91-178 (289)
81 cd01714 ETF_beta The electron 70.5 51 0.0011 26.0 9.1 32 30-61 29-60 (202)
82 TIGR00655 PurU formyltetrahydr 70.4 57 0.0012 27.3 9.6 85 23-150 82-169 (280)
83 COG0452 Dfp Phosphopantothenoy 70.3 19 0.00041 31.7 7.0 37 24-61 3-39 (392)
84 COG1606 ATP-utilizing enzymes 70.0 62 0.0013 26.8 10.5 36 25-63 17-52 (269)
85 PF07355 GRDB: Glycine/sarcosi 69.4 14 0.00029 32.0 5.7 68 116-188 47-122 (349)
86 COG1597 LCB5 Sphingosine kinas 69.3 30 0.00065 29.2 7.8 75 106-191 23-97 (301)
87 PF13167 GTP-bdg_N: GTP-bindin 68.9 36 0.00078 23.6 7.4 64 105-181 10-84 (95)
88 cd03364 TOPRIM_DnaG_primases T 68.1 15 0.00033 24.0 4.7 35 25-59 43-77 (79)
89 PRK00994 F420-dependent methyl 67.6 35 0.00077 27.9 7.3 50 130-188 49-98 (277)
90 PRK13054 lipid kinase; Reviewe 67.2 37 0.00079 28.4 8.0 74 110-194 25-101 (300)
91 COG1066 Sms Predicted ATP-depe 67.1 94 0.002 27.8 11.2 55 128-185 155-218 (456)
92 PRK08185 hypothetical protein; 65.9 17 0.00037 30.5 5.5 69 115-188 11-79 (283)
93 PRK05406 LamB/YcsF family prot 65.4 48 0.001 27.2 7.9 119 31-181 35-162 (246)
94 TIGR00289 conserved hypothetic 64.5 74 0.0016 25.7 10.4 91 27-150 2-94 (222)
95 cd02067 B12-binding B12 bindin 64.4 33 0.00071 24.2 6.2 39 111-151 22-60 (119)
96 KOG0781 Signal recognition par 63.7 56 0.0012 29.8 8.4 121 22-183 376-503 (587)
97 PRK05920 aromatic acid decarbo 63.6 17 0.00038 28.9 5.0 35 24-59 2-36 (204)
98 PRK12569 hypothetical protein; 63.4 54 0.0012 26.9 7.8 105 30-151 37-150 (245)
99 PRK06027 purU formyltetrahydro 62.7 92 0.002 26.1 9.8 87 22-151 86-175 (286)
100 PRK00286 xseA exodeoxyribonucl 62.4 24 0.00052 31.4 6.2 53 124-183 172-230 (438)
101 PRK00509 argininosuccinate syn 62.2 11 0.00023 33.4 3.8 36 24-62 1-36 (399)
102 COG1927 Mtd Coenzyme F420-depe 62.0 62 0.0014 26.0 7.6 49 130-187 49-97 (277)
103 PRK08091 ribulose-phosphate 3- 62.0 55 0.0012 26.6 7.6 41 108-150 169-209 (228)
104 PRK08745 ribulose-phosphate 3- 62.0 55 0.0012 26.4 7.6 37 113-151 166-202 (223)
105 PF13662 Toprim_4: Toprim doma 61.4 14 0.00031 24.3 3.6 34 25-58 46-79 (81)
106 PRK13337 putative lipid kinase 60.5 64 0.0014 27.0 8.2 75 109-194 25-100 (304)
107 PF04244 DPRP: Deoxyribodipyri 60.2 39 0.00085 27.3 6.5 76 103-188 49-128 (224)
108 PRK05370 argininosuccinate syn 60.0 50 0.0011 29.6 7.5 35 24-62 10-44 (447)
109 TIGR00853 pts-lac PTS system, 59.7 13 0.00028 25.7 3.2 61 110-187 25-85 (95)
110 cd08550 GlyDH-like Glycerol_de 59.6 53 0.0011 28.2 7.7 66 108-186 41-110 (349)
111 PRK00109 Holliday junction res 59.6 15 0.00033 27.2 3.8 56 129-187 42-99 (138)
112 TIGR01769 GGGP geranylgeranylg 58.8 27 0.00059 27.8 5.3 53 132-191 15-67 (205)
113 TIGR00290 MJ0570_dom MJ0570-re 58.1 99 0.0021 25.0 10.9 91 27-150 2-94 (223)
114 TIGR00237 xseA exodeoxyribonuc 58.0 36 0.00079 30.3 6.5 55 123-184 165-226 (432)
115 TIGR00032 argG argininosuccina 57.7 17 0.00037 32.0 4.4 32 27-62 1-32 (394)
116 PRK14057 epimerase; Provisiona 57.7 72 0.0016 26.3 7.7 42 108-151 183-224 (254)
117 PRK12737 gatY tagatose-bisphos 57.6 38 0.00082 28.5 6.2 75 111-189 12-86 (284)
118 TIGR00959 ffh signal recogniti 57.6 1.3E+02 0.0028 26.8 9.9 36 26-61 101-136 (428)
119 TIGR02855 spore_yabG sporulati 57.5 40 0.00087 28.1 6.1 42 110-151 122-163 (283)
120 COG0036 Rpe Pentose-5-phosphat 57.4 75 0.0016 25.7 7.5 31 118-150 169-199 (220)
121 KOG1467 Translation initiation 57.3 1.3E+02 0.0028 27.4 9.6 114 24-188 358-472 (556)
122 COG1058 CinA Predicted nucleot 56.9 47 0.001 27.4 6.5 66 107-182 25-92 (255)
123 PRK12857 fructose-1,6-bisphosp 56.0 43 0.00093 28.1 6.3 73 112-188 13-85 (284)
124 PRK06806 fructose-bisphosphate 55.5 52 0.0011 27.5 6.7 75 110-188 11-85 (281)
125 TIGR03702 lip_kinase_YegS lipi 55.4 76 0.0017 26.4 7.8 73 111-194 22-97 (293)
126 PRK12738 kbaY tagatose-bisphos 55.3 46 0.00099 28.0 6.3 73 112-188 13-85 (286)
127 TIGR01858 tag_bisphos_ald clas 55.2 45 0.00098 28.0 6.3 73 113-189 12-84 (282)
128 PRK00766 hypothetical protein; 55.1 37 0.0008 26.8 5.4 59 116-183 42-104 (194)
129 cd00946 FBP_aldolase_IIA Class 54.9 41 0.0009 29.1 6.1 79 109-189 8-99 (345)
130 PF02878 PGM_PMM_I: Phosphoglu 54.6 17 0.00037 26.6 3.4 43 23-65 38-80 (137)
131 PF05582 Peptidase_U57: YabG p 54.3 43 0.00093 28.1 5.9 41 111-151 124-164 (287)
132 PRK13398 3-deoxy-7-phosphohept 54.2 1.3E+02 0.0027 25.0 10.9 85 34-151 36-120 (266)
133 TIGR00884 guaA_Cterm GMP synth 53.6 1.4E+02 0.003 25.4 10.4 34 26-62 17-50 (311)
134 PF00781 DAGK_cat: Diacylglyce 53.5 75 0.0016 22.7 6.6 71 108-189 20-94 (130)
135 TIGR01917 gly_red_sel_B glycin 53.5 35 0.00075 30.3 5.5 68 115-187 42-117 (431)
136 TIGR00524 eIF-2B_rel eIF-2B al 53.5 27 0.00059 29.6 4.8 71 109-188 171-242 (303)
137 PRK07998 gatY putative fructos 53.2 30 0.00065 29.1 4.9 73 112-188 13-85 (283)
138 PRK09722 allulose-6-phosphate 52.3 1.3E+02 0.0027 24.5 10.3 42 107-150 158-199 (229)
139 TIGR00646 MG010 DNA primase-re 52.3 32 0.0007 27.7 4.7 37 25-61 154-190 (218)
140 cd01029 TOPRIM_primases TOPRIM 52.1 42 0.00091 21.6 4.7 34 25-58 43-76 (79)
141 TIGR01425 SRP54_euk signal rec 52.1 1.8E+02 0.0038 26.1 9.9 33 28-61 104-136 (429)
142 PRK06801 hypothetical protein; 51.7 63 0.0014 27.1 6.6 72 113-188 14-85 (286)
143 cd08189 Fe-ADH5 Iron-containin 51.5 68 0.0015 27.8 7.1 21 130-150 72-93 (374)
144 PHA02031 putative DnaG-like pr 51.5 23 0.00051 29.3 3.9 37 25-61 206-242 (266)
145 TIGR00147 lipid kinase, YegS/R 51.5 1.3E+02 0.0029 24.8 8.7 74 108-192 24-98 (293)
146 TIGR00930 2a30 K-Cl cotranspor 50.5 2.7E+02 0.0059 27.7 12.3 128 26-187 576-711 (953)
147 COG1184 GCD2 Translation initi 50.2 98 0.0021 26.3 7.5 45 141-188 187-232 (301)
148 COG0301 ThiI Thiamine biosynth 50.1 96 0.0021 27.3 7.7 40 22-65 172-211 (383)
149 PF13362 Toprim_3: Toprim doma 49.9 46 0.00099 22.5 4.8 39 23-61 39-79 (96)
150 PF02568 ThiI: Thiamine biosyn 49.9 1.3E+02 0.0028 23.8 8.8 38 24-65 2-39 (197)
151 PRK08334 translation initiatio 49.3 55 0.0012 28.4 6.0 66 111-185 214-280 (356)
152 TIGR01918 various_sel_PB selen 49.2 43 0.00093 29.8 5.4 68 115-187 42-117 (431)
153 PRK04527 argininosuccinate syn 49.1 40 0.00086 29.8 5.2 34 25-62 2-35 (400)
154 PRK13055 putative lipid kinase 49.1 1.4E+02 0.003 25.5 8.5 75 108-193 25-101 (334)
155 PRK08305 spoVFB dipicolinate s 49.0 49 0.0011 26.2 5.3 35 24-59 4-39 (196)
156 PRK09261 phospho-2-dehydro-3-d 49.0 1.8E+02 0.0039 25.3 9.6 130 22-182 48-185 (349)
157 PRK05720 mtnA methylthioribose 48.1 46 0.00099 28.8 5.4 70 110-188 200-270 (344)
158 TIGR00511 ribulose_e2b2 ribose 47.9 45 0.00097 28.2 5.2 69 109-188 159-228 (301)
159 PLN02828 formyltetrahydrofolat 47.4 1.7E+02 0.0036 24.4 10.0 39 23-62 68-106 (268)
160 PRK09197 fructose-bisphosphate 47.3 88 0.0019 27.2 6.9 80 108-189 12-104 (350)
161 PRK06371 translation initiatio 47.2 61 0.0013 27.9 5.9 67 110-185 190-257 (329)
162 PRK09590 celB cellobiose phosp 46.7 36 0.00079 23.9 3.8 60 112-186 25-84 (104)
163 COG0420 SbcD DNA repair exonuc 46.6 36 0.00077 29.6 4.6 21 129-149 28-48 (390)
164 TIGR00167 cbbA ketose-bisphosp 46.3 63 0.0014 27.2 5.8 74 111-188 12-88 (288)
165 cd00947 TBP_aldolase_IIB Tagat 46.3 74 0.0016 26.6 6.2 72 114-189 10-81 (276)
166 PLN00096 isocitrate dehydrogen 46.1 1.6E+02 0.0034 26.1 8.3 36 27-62 166-202 (393)
167 PF01008 IF-2B: Initiation fac 46.0 52 0.0011 27.2 5.3 68 110-188 152-221 (282)
168 PF01116 F_bP_aldolase: Fructo 45.9 16 0.00034 30.8 2.2 74 108-185 8-81 (287)
169 TIGR00512 salvage_mtnA S-methy 45.9 56 0.0012 28.1 5.5 70 110-188 200-270 (331)
170 PRK00861 putative lipid kinase 45.9 1E+02 0.0022 25.7 7.2 67 116-194 32-98 (300)
171 COG0426 FpaA Uncharacterized f 45.8 1.4E+02 0.0031 26.3 8.0 83 103-193 262-346 (388)
172 TIGR00250 RNAse_H_YqgF RNAse H 45.7 37 0.0008 24.9 3.9 57 128-188 35-94 (130)
173 cd08176 LPO Lactadehyde:propan 45.3 82 0.0018 27.3 6.7 21 130-150 74-95 (377)
174 TIGR01826 CofD_related conserv 45.1 59 0.0013 27.7 5.5 58 128-191 161-218 (310)
175 cd03557 L-arabinose_isomerase 44.8 1.2E+02 0.0026 27.6 7.7 75 102-187 22-101 (484)
176 PRK09423 gldA glycerol dehydro 44.7 1.1E+02 0.0025 26.3 7.5 66 108-186 48-117 (366)
177 PRK09195 gatY tagatose-bisphos 44.7 76 0.0017 26.7 6.1 71 114-188 15-85 (284)
178 cd01715 ETF_alpha The electron 44.6 1.3E+02 0.0029 22.6 9.1 23 129-151 71-93 (168)
179 PF05677 DUF818: Chlamydia CHL 44.3 2.2E+02 0.0047 24.9 10.4 139 23-188 134-301 (365)
180 cd07187 YvcK_like family of mo 44.3 1.1E+02 0.0023 26.1 6.9 61 128-194 164-224 (308)
181 cd05565 PTS_IIB_lactose PTS_II 43.9 38 0.00082 23.6 3.5 59 110-185 22-80 (99)
182 PRK08384 thiamine biosynthesis 43.4 2.3E+02 0.005 24.9 9.7 38 22-63 177-214 (381)
183 cd00453 FTBP_aldolase_II Fruct 43.3 54 0.0012 28.3 5.0 74 113-188 9-96 (340)
184 PF01791 DeoC: DeoC/LacD famil 43.1 1.7E+02 0.0037 23.4 8.3 81 98-184 107-200 (236)
185 PF03652 UPF0081: Uncharacteri 43.1 32 0.00068 25.4 3.2 62 127-189 37-99 (135)
186 COG1570 XseA Exonuclease VII, 43.1 87 0.0019 28.0 6.4 53 124-183 172-231 (440)
187 PF01902 ATP_bind_4: ATP-bindi 43.0 1.7E+02 0.0038 23.4 9.2 91 27-150 2-94 (218)
188 PF02310 B12-binding: B12 bind 42.8 1.1E+02 0.0024 21.2 7.2 40 110-151 22-61 (121)
189 COG0036 Rpe Pentose-5-phosphat 42.8 1.7E+02 0.0036 23.7 7.4 59 107-173 100-158 (220)
190 PF00532 Peripla_BP_1: Peripla 42.6 1.9E+02 0.0041 23.7 8.9 71 103-186 18-88 (279)
191 cd08170 GlyDH Glycerol dehydro 42.6 2.2E+02 0.0047 24.4 9.8 67 108-186 41-110 (351)
192 cd07044 CofD_YvcK Family of Co 42.4 56 0.0012 27.8 5.0 57 128-190 163-219 (309)
193 PLN02958 diacylglycerol kinase 42.1 2.7E+02 0.0058 25.3 11.8 72 111-193 138-215 (481)
194 PRK08335 translation initiatio 42.1 65 0.0014 26.9 5.2 69 109-188 153-222 (275)
195 PRK07315 fructose-bisphosphate 42.0 73 0.0016 26.9 5.6 72 112-187 13-87 (293)
196 cd01997 GMP_synthase_C The C-t 41.8 2.1E+02 0.0046 24.1 10.1 33 27-62 1-33 (295)
197 PRK14665 mnmA tRNA-specific 2- 41.2 2.4E+02 0.0052 24.5 13.0 36 23-62 3-38 (360)
198 PRK13011 formyltetrahydrofolat 41.1 2.2E+02 0.0047 23.9 10.0 84 24-150 88-174 (286)
199 PRK13399 fructose-1,6-bisphosp 40.9 1.1E+02 0.0023 26.6 6.5 75 111-189 12-87 (347)
200 PRK09196 fructose-1,6-bisphosp 40.7 73 0.0016 27.6 5.4 72 113-188 14-86 (347)
201 cd02070 corrinoid_protein_B12- 40.6 1.1E+02 0.0024 24.0 6.2 64 112-184 106-172 (201)
202 cd05564 PTS_IIB_chitobiose_lic 40.2 47 0.001 22.8 3.5 63 108-187 19-81 (96)
203 PRK08535 translation initiatio 40.1 66 0.0014 27.3 5.1 69 109-188 164-233 (310)
204 PRK13057 putative lipid kinase 40.0 91 0.002 25.8 5.9 74 108-194 18-91 (287)
205 PF14639 YqgF: Holliday-juncti 39.9 37 0.0008 25.6 3.2 22 130-151 52-73 (150)
206 PRK09860 putative alcohol dehy 39.8 1.3E+02 0.0027 26.3 7.0 22 130-151 77-99 (383)
207 PF00885 DMRL_synthase: 6,7-di 39.6 1.1E+02 0.0023 22.9 5.6 74 103-181 20-103 (144)
208 PRK06247 pyruvate kinase; Prov 39.6 65 0.0014 29.2 5.2 46 129-188 357-403 (476)
209 TIGR01520 FruBisAldo_II_A fruc 39.4 1.6E+02 0.0035 25.6 7.3 79 109-189 19-111 (357)
210 TIGR01521 FruBisAldo_II_B fruc 39.2 1.2E+02 0.0025 26.4 6.4 74 112-189 11-85 (347)
211 PLN02461 Probable pyruvate kin 39.2 66 0.0014 29.4 5.2 43 128-184 382-425 (511)
212 PRK08576 hypothetical protein; 39.0 2.9E+02 0.0063 24.8 10.4 31 27-61 236-266 (438)
213 PRK06372 translation initiatio 38.6 73 0.0016 26.3 4.9 71 108-189 126-197 (253)
214 cd05802 GlmM GlmM is a bacteri 38.5 2.2E+02 0.0048 25.1 8.5 42 25-66 37-78 (434)
215 COG0137 ArgG Argininosuccinate 38.3 2.8E+02 0.0061 24.5 12.0 117 23-152 2-123 (403)
216 TIGR01859 fruc_bis_ald_ fructo 38.2 1.3E+02 0.0028 25.2 6.5 72 113-188 12-85 (282)
217 PRK08883 ribulose-phosphate 3- 37.7 2.1E+02 0.0046 22.9 7.7 41 108-150 157-197 (220)
218 COG2379 GckA Putative glycerat 37.6 70 0.0015 28.2 4.8 68 118-188 247-318 (422)
219 PRK00074 guaA GMP synthase; Re 37.6 3.2E+02 0.007 25.0 10.4 35 25-62 215-249 (511)
220 PRK15424 propionate catabolism 37.6 1.5E+02 0.0032 27.4 7.2 54 115-187 36-93 (538)
221 PRK12361 hypothetical protein; 37.1 1.4E+02 0.003 27.4 7.1 66 117-194 273-338 (547)
222 PTZ00300 pyruvate kinase; Prov 37.0 76 0.0016 28.6 5.2 45 128-186 335-380 (454)
223 COG0562 Glf UDP-galactopyranos 37.0 59 0.0013 28.1 4.2 39 142-193 2-40 (374)
224 cd02072 Glm_B12_BD B12 binding 36.7 1.4E+02 0.0031 21.9 5.7 38 112-151 23-60 (128)
225 PF03129 HGTP_anticodon: Antic 36.0 1.3E+02 0.0028 19.9 5.6 45 103-149 16-61 (94)
226 cd01971 Nitrogenase_VnfN_like 35.7 65 0.0014 28.5 4.6 22 130-151 105-126 (427)
227 PRK10481 hypothetical protein; 35.5 2E+02 0.0043 23.3 6.9 57 115-183 152-212 (224)
228 PRK05835 fructose-bisphosphate 35.5 1.4E+02 0.0031 25.4 6.4 73 113-189 13-86 (307)
229 COG0163 UbiX 3-polyprenyl-4-hy 35.5 85 0.0018 24.7 4.5 36 25-61 2-37 (191)
230 TIGR01064 pyruv_kin pyruvate k 35.4 77 0.0017 28.7 5.0 46 128-187 360-406 (473)
231 TIGR01283 nifE nitrogenase mol 35.4 54 0.0012 29.4 4.0 54 129-187 109-162 (456)
232 PLN02765 pyruvate kinase 35.4 79 0.0017 29.0 5.1 43 128-184 395-438 (526)
233 TIGR00421 ubiX_pad polyprenyl 35.2 68 0.0015 24.9 4.1 32 27-59 1-32 (181)
234 cd02065 B12-binding_like B12 b 35.1 1.1E+02 0.0024 21.3 5.1 64 112-185 23-88 (125)
235 cd01967 Nitrogenase_MoFe_alpha 34.9 69 0.0015 28.0 4.6 20 21-40 18-37 (406)
236 PLN02762 pyruvate kinase compl 34.8 83 0.0018 28.8 5.1 46 128-187 396-442 (509)
237 PRK12858 tagatose 1,6-diphosph 34.8 3E+02 0.0065 23.8 10.3 133 26-186 84-250 (340)
238 smart00493 TOPRIM topoisomeras 34.8 68 0.0015 20.3 3.5 26 26-51 48-73 (76)
239 TIGR01768 GGGP-family geranylg 34.6 1.1E+02 0.0023 24.8 5.3 53 130-190 16-68 (223)
240 PF01993 MTD: methylene-5,6,7, 34.5 94 0.002 25.6 4.8 48 131-187 49-96 (276)
241 PRK13059 putative lipid kinase 34.3 2E+02 0.0044 23.9 7.2 73 108-193 24-98 (295)
242 COG0788 PurU Formyltetrahydrof 34.1 2.8E+02 0.0061 23.2 8.8 36 115-150 137-175 (287)
243 TIGR01304 IMP_DH_rel_2 IMP deh 34.1 2.5E+02 0.0055 24.5 7.8 40 109-150 125-164 (369)
244 COG1162 Predicted GTPases [Gen 34.1 2.9E+02 0.0064 23.4 7.9 98 28-160 85-183 (301)
245 TIGR00696 wecB_tagA_cpsF bacte 34.1 2E+02 0.0044 22.2 6.6 34 115-150 73-109 (177)
246 PRK02929 L-arabinose isomerase 33.7 2.3E+02 0.0049 25.9 7.7 71 103-185 29-105 (499)
247 cd01972 Nitrogenase_VnfE_like 33.5 61 0.0013 28.7 4.1 17 45-61 15-31 (426)
248 PRK09206 pyruvate kinase; Prov 33.4 87 0.0019 28.4 5.0 46 128-187 357-403 (470)
249 PRK14072 6-phosphofructokinase 33.2 1.6E+02 0.0035 26.1 6.6 37 24-60 2-42 (416)
250 COG2102 Predicted ATPases of P 33.2 2.6E+02 0.0057 22.6 9.5 36 115-150 58-95 (223)
251 cd01968 Nitrogenase_NifE_I Nit 33.1 79 0.0017 27.8 4.7 11 51-61 21-31 (410)
252 COG2201 CheB Chemotaxis respon 33.1 2.8E+02 0.0061 24.1 7.8 57 118-185 26-82 (350)
253 PF14582 Metallophos_3: Metall 32.9 69 0.0015 26.2 3.8 23 128-150 19-41 (255)
254 KOG4435 Predicted lipid kinase 32.7 78 0.0017 28.1 4.3 65 112-188 88-154 (535)
255 PF12745 HGTP_anticodon2: Anti 32.7 1.4E+02 0.0031 24.9 5.8 44 107-151 24-67 (273)
256 cd08171 GlyDH-like2 Glycerol d 32.6 3E+02 0.0065 23.5 8.1 66 108-186 41-111 (345)
257 cd02071 MM_CoA_mut_B12_BD meth 32.5 1.3E+02 0.0027 21.5 4.9 38 112-151 23-60 (122)
258 TIGR02634 xylF D-xylose ABC tr 32.5 2.6E+02 0.0056 23.0 7.6 17 133-149 46-62 (302)
259 PRK02261 methylaspartate mutas 32.4 1.1E+02 0.0024 22.5 4.7 39 24-62 2-40 (137)
260 COG1504 Uncharacterized conser 32.4 1.2E+02 0.0026 21.8 4.5 49 130-187 51-99 (121)
261 PRK14177 bifunctional 5,10-met 32.3 55 0.0012 27.5 3.3 52 129-192 142-198 (284)
262 TIGR01859 fruc_bis_ald_ fructo 32.0 2.6E+02 0.0056 23.4 7.3 76 104-184 116-207 (282)
263 PF05716 AKAP_110: A-kinase an 31.9 1.1E+02 0.0023 28.4 5.2 29 108-143 638-666 (685)
264 PRK05826 pyruvate kinase; Prov 31.9 1E+02 0.0022 27.9 5.2 45 128-186 359-405 (465)
265 cd02071 MM_CoA_mut_B12_BD meth 31.8 95 0.0021 22.1 4.2 35 28-62 2-36 (122)
266 cd06278 PBP1_LacI_like_2 Ligan 31.8 2.5E+02 0.0055 22.0 8.0 37 112-148 25-61 (266)
267 PRK10653 D-ribose transporter 31.8 1.9E+02 0.0041 23.5 6.6 66 107-184 47-114 (295)
268 KOG2310 DNA repair exonuclease 31.6 63 0.0014 29.8 3.7 55 129-187 40-99 (646)
269 PRK08610 fructose-bisphosphate 31.6 1.9E+02 0.0041 24.3 6.4 73 112-188 13-88 (286)
270 TIGR02329 propionate_PrpR prop 31.6 2.8E+02 0.0061 25.5 8.0 51 119-187 30-83 (526)
271 KOG1465 Translation initiation 31.5 3.4E+02 0.0073 23.3 7.8 43 141-186 230-273 (353)
272 PRK14664 tRNA-specific 2-thiou 31.5 3.5E+02 0.0077 23.6 10.8 35 23-61 3-37 (362)
273 PF07302 AroM: AroM protein; 31.4 2.7E+02 0.0059 22.5 7.0 58 115-184 148-209 (221)
274 PF01884 PcrB: PcrB family; I 31.4 1.1E+02 0.0023 24.9 4.8 56 127-191 18-73 (230)
275 PTZ00066 pyruvate kinase; Prov 31.3 1.1E+02 0.0023 28.2 5.2 46 128-187 398-444 (513)
276 cd08173 Gro1PDH Sn-glycerol-1- 31.3 1.7E+02 0.0036 25.0 6.3 45 130-187 67-112 (339)
277 PRK06354 pyruvate kinase; Prov 31.2 96 0.0021 29.0 5.0 45 129-187 365-410 (590)
278 PRK05568 flavodoxin; Provision 31.2 1.8E+02 0.0038 21.0 5.7 40 105-151 19-58 (142)
279 PRK07084 fructose-bisphosphate 31.1 1.7E+02 0.0036 25.2 6.1 76 111-188 18-96 (321)
280 PRK06455 riboflavin synthase; 30.4 2.1E+02 0.0045 21.8 5.9 65 115-184 29-98 (155)
281 COG0191 Fba Fructose/tagatose 30.3 1.7E+02 0.0037 24.6 5.9 76 109-188 10-86 (286)
282 PF00834 Ribul_P_3_epim: Ribul 30.2 55 0.0012 25.9 2.9 44 105-150 153-196 (201)
283 cd01999 Argininosuccinate_Synt 30.1 85 0.0018 27.6 4.3 32 28-62 1-32 (385)
284 PF12965 DUF3854: Domain of un 29.9 1.5E+02 0.0032 21.7 5.0 40 22-61 65-110 (130)
285 COG2870 RfaE ADP-heptose synth 29.9 3.6E+02 0.0078 24.1 7.9 51 130-188 130-182 (467)
286 COG0190 FolD 5,10-methylene-te 29.8 98 0.0021 26.0 4.4 57 130-198 140-201 (283)
287 TIGR00177 molyb_syn molybdenum 29.6 1.9E+02 0.0041 21.2 5.6 39 110-149 34-74 (144)
288 PRK05772 translation initiatio 29.4 2.4E+02 0.0052 24.7 6.8 67 112-187 223-290 (363)
289 cd02812 PcrB_like PcrB_like pr 29.2 1.5E+02 0.0031 24.0 5.2 53 130-190 14-67 (219)
290 PRK05569 flavodoxin; Provision 29.1 2E+02 0.0042 20.7 5.6 40 105-151 19-58 (141)
291 PRK01565 thiamine biosynthesis 29.0 4E+02 0.0086 23.4 11.2 37 22-62 173-209 (394)
292 PRK14478 nitrogenase molybdenu 28.9 81 0.0018 28.5 4.1 14 48-61 51-64 (475)
293 PF12683 DUF3798: Protein of u 28.9 3E+02 0.0064 23.1 6.9 92 27-151 4-96 (275)
294 PF13607 Succ_CoA_lig: Succiny 28.9 1.8E+02 0.0039 21.5 5.3 75 108-191 17-95 (138)
295 cd06320 PBP1_allose_binding Pe 28.6 2.4E+02 0.0053 22.4 6.7 41 110-150 23-66 (275)
296 cd07186 CofD_like LPPG:FO 2-ph 28.6 2E+02 0.0043 24.5 6.0 52 128-185 172-223 (303)
297 PF03808 Glyco_tran_WecB: Glyc 28.5 2.4E+02 0.0053 21.4 6.2 24 128-151 88-111 (172)
298 PF01933 UPF0052: Uncharacteri 28.5 97 0.0021 26.2 4.3 65 118-189 158-227 (300)
299 TIGR00640 acid_CoA_mut_C methy 28.5 1.7E+02 0.0036 21.4 5.0 62 113-183 27-89 (132)
300 cd06533 Glyco_transf_WecG_TagA 28.5 1.2E+02 0.0027 23.1 4.5 22 130-151 88-109 (171)
301 cd00861 ProRS_anticodon_short 28.4 1.7E+02 0.0037 19.2 4.8 45 104-150 19-64 (94)
302 KOG1466 Translation initiation 28.2 1.4E+02 0.003 24.9 4.9 66 110-186 175-241 (313)
303 PF03358 FMN_red: NADPH-depend 28.1 2.4E+02 0.0051 20.5 6.1 45 105-151 20-80 (152)
304 PRK12756 phospho-2-dehydro-3-d 28.1 4E+02 0.0087 23.1 9.0 130 22-183 47-185 (348)
305 PF01261 AP_endonuc_2: Xylose 27.9 2.7E+02 0.0058 21.0 6.9 83 39-143 70-157 (213)
306 PLN02331 phosphoribosylglycina 27.8 3.1E+02 0.0067 21.8 9.6 21 130-150 67-87 (207)
307 PRK08349 hypothetical protein; 27.7 1.3E+02 0.0028 23.4 4.6 33 26-62 1-33 (198)
308 PRK04169 geranylgeranylglycery 27.7 1.6E+02 0.0034 24.0 5.1 54 132-193 23-76 (232)
309 PF05728 UPF0227: Uncharacteri 27.6 1.8E+02 0.0039 22.6 5.4 62 112-186 24-90 (187)
310 cd06318 PBP1_ABC_sugar_binding 27.6 3.2E+02 0.0068 21.8 8.1 66 107-184 20-87 (282)
311 COG1540 Uncharacterized protei 27.5 2.9E+02 0.0063 22.7 6.5 49 103-151 90-147 (252)
312 cd05008 SIS_GlmS_GlmD_1 SIS (S 27.4 96 0.0021 21.7 3.6 41 22-63 43-83 (126)
313 PRK08005 epimerase; Validated 27.3 2.9E+02 0.0063 22.0 6.6 26 124-150 168-193 (210)
314 PRK07709 fructose-bisphosphate 27.2 2.8E+02 0.006 23.3 6.7 72 113-188 14-88 (285)
315 cd00019 AP2Ec AP endonuclease 27.1 3.4E+02 0.0075 22.0 7.6 80 37-141 82-166 (279)
316 TIGR01501 MthylAspMutase methy 27.1 1.4E+02 0.0031 22.0 4.4 38 112-151 25-62 (134)
317 COG3673 Uncharacterized conser 27.1 2.3E+02 0.005 24.6 6.1 43 15-57 20-68 (423)
318 COG4126 Hydantoin racemase [Am 27.1 79 0.0017 25.6 3.2 22 130-151 163-184 (230)
319 PRK06395 phosphoribosylamine-- 27.0 3.5E+02 0.0076 24.1 7.8 24 24-49 1-24 (435)
320 cd00958 DhnA Class I fructose- 26.9 3.2E+02 0.007 21.6 8.2 69 103-184 109-186 (235)
321 cd00578 L-fuc_L-ara-isomerases 26.8 4.4E+02 0.0096 23.4 8.4 78 100-188 20-99 (452)
322 COG1440 CelA Phosphotransferas 26.7 1.4E+02 0.0031 21.0 4.1 55 115-186 28-82 (102)
323 PF13155 Toprim_2: Toprim-like 26.5 1.3E+02 0.0029 19.9 4.1 30 24-53 46-75 (96)
324 PF03162 Y_phosphatase2: Tyros 26.4 1.2E+02 0.0025 23.2 4.0 73 115-190 31-104 (164)
325 PRK06850 hypothetical protein; 26.4 4.2E+02 0.0092 24.3 8.1 25 25-49 34-58 (507)
326 cd06316 PBP1_ABC_sugar_binding 26.3 3.5E+02 0.0076 21.9 8.0 67 108-185 21-89 (294)
327 CHL00076 chlB photochlorophyll 26.3 1.2E+02 0.0025 27.8 4.6 18 45-62 16-33 (513)
328 cd00288 Pyruvate_Kinase Pyruva 26.2 1.3E+02 0.0029 27.3 4.9 48 128-189 362-410 (480)
329 cd06322 PBP1_ABC_sugar_binding 26.1 3.1E+02 0.0067 21.6 6.8 67 106-184 19-87 (267)
330 COG3046 Uncharacterized protei 25.8 4.2E+02 0.0092 23.8 7.6 73 104-186 54-126 (505)
331 cd02933 OYE_like_FMN Old yello 25.6 4.3E+02 0.0093 22.6 9.9 133 38-185 150-293 (338)
332 CHL00073 chlN photochlorophyll 25.6 1.3E+02 0.0028 27.2 4.7 25 38-62 20-44 (457)
333 PRK15408 autoinducer 2-binding 25.5 3.5E+02 0.0076 22.9 7.3 64 112-186 49-114 (336)
334 cd02801 DUS_like_FMN Dihydrour 25.4 3.3E+02 0.0072 21.3 9.7 50 129-184 139-190 (231)
335 PRK00211 sulfur relay protein 25.4 2.3E+02 0.005 20.3 5.2 38 25-63 1-42 (119)
336 KOG1552 Predicted alpha/beta h 25.4 1.5E+02 0.0032 24.6 4.6 66 115-187 126-202 (258)
337 PF09967 DUF2201: VWA-like dom 25.4 1.5E+02 0.0032 21.4 4.3 34 28-61 1-39 (126)
338 cd06300 PBP1_ABC_sugar_binding 25.2 3.5E+02 0.0075 21.4 7.7 59 116-185 32-93 (272)
339 cd01537 PBP1_Repressors_Sugar_ 25.2 3.2E+02 0.007 21.0 8.9 62 112-186 25-88 (264)
340 TIGR01357 aroB 3-dehydroquinat 25.1 4.3E+02 0.0093 22.5 8.0 66 108-186 39-116 (344)
341 COG0151 PurD Phosphoribosylami 25.1 69 0.0015 28.5 2.8 21 130-150 52-72 (428)
342 PRK00843 egsA NAD(P)-dependent 24.9 2.3E+02 0.005 24.3 6.1 45 130-187 76-121 (350)
343 PRK01269 tRNA s(4)U8 sulfurtra 24.9 5.2E+02 0.011 23.4 11.2 37 22-62 174-210 (482)
344 PRK14170 bifunctional 5,10-met 24.9 95 0.0021 26.1 3.5 50 130-191 141-195 (284)
345 PRK10415 tRNA-dihydrouridine s 24.8 4.3E+02 0.0094 22.4 8.7 65 116-185 133-202 (321)
346 cd00858 GlyRS_anticodon GlyRS 24.6 2.6E+02 0.0056 19.7 5.8 44 104-150 43-87 (121)
347 PF00676 E1_dh: Dehydrogenase 24.5 2.4E+02 0.0052 23.7 6.0 37 24-63 121-159 (300)
348 PRK14176 bifunctional 5,10-met 24.4 97 0.0021 26.1 3.5 50 129-190 147-201 (287)
349 PRK03670 competence damage-ind 24.4 4E+02 0.0087 21.9 7.5 40 108-148 25-67 (252)
350 cd06301 PBP1_rhizopine_binding 24.4 3.5E+02 0.0076 21.4 6.8 59 115-185 29-89 (272)
351 cd06309 PBP1_YtfQ_like Peripla 24.3 3.6E+02 0.0079 21.3 7.7 70 104-185 17-88 (273)
352 COG0622 Predicted phosphoester 24.2 2.5E+02 0.0054 21.6 5.5 63 119-184 82-152 (172)
353 cd05014 SIS_Kpsf KpsF-like pro 24.2 1.3E+02 0.0029 21.0 3.9 42 22-64 44-85 (128)
354 COG0279 GmhA Phosphoheptose is 24.0 1.3E+02 0.0029 23.3 3.8 41 21-62 105-145 (176)
355 PRK09271 flavodoxin; Provision 23.9 1.2E+02 0.0025 22.8 3.6 45 104-151 17-61 (160)
356 COG0371 GldA Glycerol dehydrog 23.9 3.2E+02 0.007 23.9 6.6 65 108-185 49-116 (360)
357 cd05710 SIS_1 A subgroup of th 23.8 1.6E+02 0.0034 20.8 4.1 41 22-63 44-84 (120)
358 COG0816 Predicted endonuclease 23.8 1.7E+02 0.0036 21.9 4.3 55 129-186 41-97 (141)
359 COG3969 Predicted phosphoadeno 23.5 1.3E+02 0.0029 26.1 4.1 38 24-61 26-64 (407)
360 PHA02546 47 endonuclease subun 23.4 2E+02 0.0043 24.6 5.3 21 129-149 27-47 (340)
361 PF02142 MGS: MGS-like domain 23.4 56 0.0012 22.2 1.6 64 112-181 26-94 (95)
362 COG1197 Mfd Transcription-repa 23.4 4.7E+02 0.01 26.7 8.2 94 21-151 612-706 (1139)
363 cd01545 PBP1_SalR Ligand-bindi 23.4 3.7E+02 0.008 21.1 8.8 35 114-148 27-63 (270)
364 PRK02261 methylaspartate mutas 23.3 2.6E+02 0.0057 20.5 5.3 38 112-151 27-64 (137)
365 cd00316 Oxidoreductase_nitroge 23.3 1.3E+02 0.0029 25.9 4.4 19 25-43 19-37 (399)
366 PRK11889 flhF flagellar biosyn 23.1 5.6E+02 0.012 23.1 8.9 34 27-61 244-277 (436)
367 PRK10886 DnaA initiator-associ 23.0 1.2E+02 0.0026 23.9 3.6 41 23-64 107-147 (196)
368 cd00860 ThrRS_anticodon ThrRS 23.0 2.2E+02 0.0047 18.3 5.8 44 105-150 17-61 (91)
369 PRK14187 bifunctional 5,10-met 22.9 1E+02 0.0023 26.0 3.4 53 129-193 143-200 (294)
370 TIGR03127 RuMP_HxlB 6-phospho 22.9 1.4E+02 0.003 22.7 3.9 42 22-64 69-110 (179)
371 cd05569 PTS_IIB_fructose PTS_I 22.9 1.9E+02 0.0041 19.7 4.2 44 107-151 20-63 (96)
372 PF01520 Amidase_3: N-acetylmu 22.8 3.3E+02 0.0071 20.3 6.6 44 103-148 28-74 (175)
373 cd01539 PBP1_GGBP Periplasmic 22.8 4.3E+02 0.0093 21.6 7.4 43 132-185 48-90 (303)
374 PRK08649 inosine 5-monophospha 22.8 4.2E+02 0.0091 23.2 7.2 38 110-149 125-162 (368)
375 cd00532 MGS-like MGS-like doma 22.8 2.7E+02 0.0059 19.4 5.7 64 114-182 40-104 (112)
376 PF13685 Fe-ADH_2: Iron-contai 22.7 2.3E+02 0.005 23.3 5.4 68 107-186 37-108 (250)
377 TIGR00619 sbcd exonuclease Sbc 22.6 1.7E+02 0.0037 23.8 4.6 8 119-126 40-47 (253)
378 cd06281 PBP1_LacI_like_5 Ligan 22.4 3.9E+02 0.0085 21.1 8.6 17 133-149 71-87 (269)
379 TIGR00829 FRU PTS system, fruc 22.4 1.9E+02 0.0041 19.4 4.0 44 107-151 19-62 (85)
380 cd06282 PBP1_GntR_like_2 Ligan 22.4 3.8E+02 0.0083 20.9 8.9 16 133-148 47-62 (266)
381 PRK14172 bifunctional 5,10-met 22.4 1.1E+02 0.0023 25.7 3.3 51 129-191 141-196 (278)
382 PRK15411 rcsA colanic acid cap 22.3 3.8E+02 0.0083 20.9 7.1 46 130-186 36-86 (207)
383 TIGR01391 dnaG DNA primase, ca 22.2 1.6E+02 0.0034 26.1 4.6 34 26-59 301-334 (415)
384 cd06354 PBP1_BmpA_PnrA_like Pe 22.2 4.1E+02 0.0089 21.2 7.6 66 107-185 23-89 (265)
385 cd01965 Nitrogenase_MoFe_beta_ 22.1 1.6E+02 0.0035 26.0 4.7 20 21-40 16-35 (428)
386 cd00885 cinA Competence-damage 22.1 3.6E+02 0.0079 20.5 6.6 40 108-148 24-65 (170)
387 TIGR01917 gly_red_sel_B glycin 21.9 1.7E+02 0.0037 26.1 4.6 51 128-186 323-373 (431)
388 cd05006 SIS_GmhA Phosphoheptos 21.9 1.3E+02 0.0027 22.9 3.5 40 23-63 99-138 (177)
389 cd08175 G1PDH Glycerol-1-phosp 21.9 5E+02 0.011 22.1 7.5 65 108-186 42-113 (348)
390 PRK10792 bifunctional 5,10-met 21.9 1.2E+02 0.0026 25.5 3.6 51 129-191 142-197 (285)
391 COG0655 WrbA Multimeric flavod 21.8 3.9E+02 0.0085 20.8 7.4 45 105-151 20-85 (207)
392 COG0503 Apt Adenine/guanine ph 21.8 2E+02 0.0044 22.1 4.7 49 132-193 44-92 (179)
393 TIGR01753 flav_short flavodoxi 21.8 3E+02 0.0064 19.4 5.4 41 104-151 15-55 (140)
394 cd01538 PBP1_ABC_xylose_bindin 21.7 4.3E+02 0.0094 21.3 7.6 67 107-185 20-88 (288)
395 smart00807 AKAP_110 A-kinase a 21.7 2.2E+02 0.0048 26.6 5.3 27 111-144 807-833 (851)
396 PRK14186 bifunctional 5,10-met 21.7 1.1E+02 0.0024 25.9 3.3 52 129-192 141-197 (297)
397 smart00852 MoCF_biosynth Proba 21.6 3.1E+02 0.0068 19.6 5.8 38 110-148 25-64 (135)
398 cd08185 Fe-ADH1 Iron-containin 21.5 2.9E+02 0.0063 23.9 6.1 22 130-151 72-94 (380)
399 cd01981 Pchlide_reductase_B Pc 21.4 1.6E+02 0.0034 26.1 4.4 20 132-151 106-126 (430)
400 COG1737 RpiR Transcriptional r 21.4 1.2E+02 0.0026 25.2 3.5 41 21-62 173-213 (281)
401 COG4635 HemG Flavodoxin [Energ 21.2 1.2E+02 0.0027 23.3 3.2 44 101-151 14-57 (175)
402 PLN02331 phosphoribosylglycina 21.2 4.2E+02 0.0092 21.0 6.8 44 107-150 15-58 (207)
403 cd05017 SIS_PGI_PMI_1 The memb 21.2 1.6E+02 0.0036 20.6 3.8 39 22-61 40-78 (119)
404 cd08192 Fe-ADH7 Iron-containin 21.1 2.5E+02 0.0054 24.2 5.6 22 130-151 70-92 (370)
405 PRK05647 purN phosphoribosylgl 21.1 4.2E+02 0.009 20.8 8.4 21 130-150 69-89 (200)
406 TIGR01755 flav_wrbA NAD(P)H:qu 21.0 2.6E+02 0.0057 21.7 5.2 12 140-151 67-78 (197)
407 PRK10550 tRNA-dihydrouridine s 21.0 5.2E+02 0.011 21.9 8.7 62 116-185 133-202 (312)
408 PF02571 CbiJ: Precorrin-6x re 20.9 2.2E+02 0.0047 23.4 4.8 49 132-191 185-233 (249)
409 PRK14169 bifunctional 5,10-met 20.8 1.2E+02 0.0026 25.5 3.3 37 26-62 32-68 (282)
410 KOG4202 Phosphoribosylanthrani 20.8 1.8E+02 0.004 22.8 4.0 59 127-208 101-159 (227)
411 cd06319 PBP1_ABC_sugar_binding 20.6 4.3E+02 0.0093 20.8 6.9 65 108-184 21-87 (277)
412 PF00215 OMPdecase: Orotidine 20.6 3.8E+02 0.0082 21.2 6.2 22 27-49 2-23 (226)
413 PRK14316 glmM phosphoglucosami 20.6 1.3E+02 0.0028 26.8 3.8 42 25-66 40-81 (448)
414 PRK07178 pyruvate carboxylase 20.6 3.7E+02 0.008 24.1 6.7 35 24-63 1-35 (472)
415 PLN02516 methylenetetrahydrofo 20.6 1.3E+02 0.0027 25.6 3.4 49 130-190 151-204 (299)
416 TIGR01278 DPOR_BchB light-inde 20.6 1.2E+02 0.0026 27.6 3.6 17 45-61 16-32 (511)
417 TIGR03573 WbuX N-acetyl sugar 20.5 5.5E+02 0.012 22.0 10.5 34 26-62 60-93 (343)
418 smart00851 MGS MGS-like domain 20.5 2.6E+02 0.0057 18.4 4.5 61 113-181 27-89 (90)
419 PRK13435 response regulator; P 20.4 2.6E+02 0.0056 19.7 4.8 48 130-185 39-86 (145)
420 PRK14166 bifunctional 5,10-met 20.4 1.2E+02 0.0026 25.5 3.2 51 129-191 140-195 (282)
421 cd01541 PBP1_AraR Ligand-bindi 20.3 4.4E+02 0.0095 20.8 8.9 40 109-149 22-63 (273)
422 PRK08227 autoinducer 2 aldolas 20.3 5.1E+02 0.011 21.5 10.1 67 104-185 128-200 (264)
423 cd01540 PBP1_arabinose_binding 20.2 4.1E+02 0.0088 21.2 6.5 64 108-184 21-86 (289)
424 COG0003 ArsA Predicted ATPase 20.2 5.5E+02 0.012 22.0 7.4 29 130-160 114-142 (322)
425 cd08178 AAD_C C-terminal alcoh 20.2 2.4E+02 0.0051 24.7 5.3 22 130-151 67-89 (398)
426 PRK14180 bifunctional 5,10-met 20.2 1.7E+02 0.0037 24.6 4.1 58 129-198 141-203 (282)
427 COG1697 DNA topoisomerase VI, 20.2 2.1E+02 0.0046 24.8 4.7 58 123-188 188-245 (356)
428 PRK14179 bifunctional 5,10-met 20.2 1.3E+02 0.0028 25.3 3.4 36 27-62 35-70 (284)
429 PRK14173 bifunctional 5,10-met 20.1 1.3E+02 0.0028 25.3 3.4 50 129-190 138-192 (287)
430 COG0284 PyrF Orotidine-5'-phos 20.0 4.9E+02 0.011 21.2 7.3 37 22-63 8-44 (240)
431 PRK06036 translation initiatio 20.0 3.7E+02 0.008 23.3 6.2 67 111-187 202-269 (339)
432 TIGR00127 nadp_idh_euk isocitr 20.0 2E+02 0.0043 25.6 4.6 29 34-62 184-212 (409)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.93 E-value=5.2e-25 Score=165.68 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=105.7
Q ss_pred CCcEEEEEecCCh--hHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 24 AQRKIAIAVDLSD--ESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 24 ~~~~IlVavD~s~--~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
||++||||+|+|+ .+.+|++||..+|+.. ++|+++||++...... +. .... . .....+...+..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~--~~---~~~~----~----~~~~~~~~~~~~ 66 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLS--LH---RFAA----D----VRRFEEHLQHEA 66 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccccc--cc---cccc----c----hhhHHHHHHHHH
Confidence 5899999999994 8999999999999874 6999999987542110 00 0000 0 011223333334
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
++.+.++.+.+...+.+++..+..| ++.+.|++++++.++||||||+++ ++ +.+. ++||++++|+++++||||
T Consensus 67 ~~~l~~~~~~~~~~~~~v~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g--~~-~~~~---llGS~a~~v~~~a~~pVL 139 (142)
T PRK15456 67 EERLQTMVSHFTIDPSRIKQHVRFG-SVRDEVNELAEELGADVVVIGSRN--PS-ISTH---LLGSNASSVIRHANLPVL 139 (142)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCC-ChHHHHHHHHhhcCCCEEEEcCCC--CC-ccce---ecCccHHHHHHcCCCCEE
Confidence 4444445544444577889999998 799999999999999999999999 76 7788 999999999999999999
Q ss_pred EEe
Q 027929 182 VLR 184 (217)
Q Consensus 182 vv~ 184 (217)
|||
T Consensus 140 vV~ 142 (142)
T PRK15456 140 VVR 142 (142)
T ss_pred EeC
Confidence 996
No 2
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.93 E-value=1.2e-24 Score=164.17 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=110.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+||||+|+|+.+.+|++||+.++...+++|+++||+++........+ .. .......+...+..++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~l~ 68 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-----KL-------EVASAYKQEEDKEAKELLL 68 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-----ch-------HHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999875422110000 00 0011112222333444445
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCcccc-chhHHHhcCCC--ccEEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLG-SVSDYCVHHCV--CPVVVL 183 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~g-S~s~~ll~~a~--~PVlvv 183 (217)
++.+.+...++.++..++.|+++.+.|++++++.++|+||||+++ ++.+.++ ++| |++.+|+++++ ||||||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g--~~~l~~~---~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 69 PYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS--DNHFSMK---FKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC--CCceeec---ccCCchhHHHHhcCCCCceEEEE
Confidence 555556667899999999987899999999999999999999999 9999888 887 69999999999 999999
Q ss_pred eCC
Q 027929 184 RYP 186 (217)
Q Consensus 184 ~~~ 186 (217)
+++
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 863
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.92 E-value=2.4e-24 Score=162.01 Aligned_cols=142 Identities=17% Similarity=0.245 Sum_probs=105.7
Q ss_pred CCcEEEEEecCChh--HHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 24 AQRKIAIAVDLSDE--SAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 24 ~~~~IlVavD~s~~--s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
|+++||||+|+|+. +.+|++||..+|+..+++|+++||++....... .+.... . . . .. .+...+..
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~~~~~---~--~----~-~~-~~~~~~~~ 68 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS-LGLAYS---A--E----L-PA-MDDLKAEA 68 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc-cccccc---c--c----c-hH-HHHHHHHH
Confidence 58999999999998 579999999999999999999999975322110 000000 0 0 0 00 11222233
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
.+.++++.+.+...+.+++..+..| ++.+.|++++++.++||||||+++ . .+.+. ++||++.+|+++++||||
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~v~~G-~p~~~I~~~a~~~~~DLIV~Gs~~--~-~~~~~---llGS~a~~vl~~a~cpVl 141 (144)
T PRK15005 69 KSQLEEIIKKFKLPTDRVHVHVEEG-SPKDRILELAKKIPADMIIIASHR--P-DITTY---LLGSNAAAVVRHAECSVL 141 (144)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHHHHcCCCEEEEeCCC--C-Cchhe---eecchHHHHHHhCCCCEE
Confidence 3444455555555677888899988 799999999999999999999875 4 57788 999999999999999999
Q ss_pred EEe
Q 027929 182 VLR 184 (217)
Q Consensus 182 vv~ 184 (217)
|||
T Consensus 142 vVr 144 (144)
T PRK15005 142 VVR 144 (144)
T ss_pred EeC
Confidence 996
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.90 E-value=2.7e-23 Score=156.59 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=102.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+++++||||+|+|+.+.+|+++|+.+|+..+++|+++||++....... .... .. .+...+...+...
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~--~~~~-------~~----~~~~~~~~~~~~~ 67 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP--GIYF-------PA----TEDILQLLKNKSD 67 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch--hhhc-------cc----hHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999875321100 0000 00 0111222223223
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.++++.+.+. ...++..+..| ++.+.|+++|++.++||||||+ + ++.+.++ + | ++++++++++|||||
T Consensus 68 ~~l~~~~~~~~--~~~~~~~v~~G-~p~~~I~~~A~~~~aDLIVmG~-~--~~~~~~~---~-~-va~~V~~~s~~pVLv 136 (142)
T PRK09982 68 NKLYKLTKNIQ--WPKTKLRIERG-EMPETLLEIMQKEQCDLLVCGH-H--HSFINRL---M-P-AYRGMINKMSADLLI 136 (142)
T ss_pred HHHHHHHHhcC--CCcceEEEEec-CHHHHHHHHHHHcCCCEEEEeC-C--hhHHHHH---H-H-HHHHHHhcCCCCEEE
Confidence 33333333332 23577788888 7999999999999999999996 4 6778777 6 5 999999999999999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||..+
T Consensus 137 v~~~~ 141 (142)
T PRK09982 137 VPFID 141 (142)
T ss_pred ecCCC
Confidence 98654
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.90 E-value=9.8e-23 Score=153.49 Aligned_cols=139 Identities=19% Similarity=0.128 Sum_probs=95.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+++++||||+|+|+.+..|+++|..+|+..+++|+++||....... +...... ......+.......
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~~~~~~----------~~~~~~~~~~~~~~ 67 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL---YTGLIDV----------NLGDMQKRISEETH 67 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh---hhhhhhc----------chHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999994322111 1000000 00011111111111
Q ss_pred HHHHHHhhhhhhcCceEEE-EEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 103 TNAKNIAEPLEEAGLQYKI-HIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~-~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
+. +.+.....|+.+.. .+..| ++.+.|+++|++.++||||||+++ . .+ +. +||++++|+++++||||
T Consensus 68 ~~---l~~~~~~~~~~~~~~~~~~G-~p~~~I~~~a~~~~~DLIV~Gs~~--~-~~-~~----lgSva~~v~~~a~~pVL 135 (144)
T PRK15118 68 HA---LTELSTNAGYPITETLSGSG-DLGQVLVDAIKKYDMDLVVCGHHQ--D-FW-SK----LMSSARQLINTVHVDML 135 (144)
T ss_pred HH---HHHHHHhCCCCceEEEEEec-CHHHHHHHHHHHhCCCEEEEeCcc--c-HH-HH----HHHHHHHHHhhCCCCEE
Confidence 22 22222345676544 44466 799999999999999999999997 4 23 22 47999999999999999
Q ss_pred EEeCC
Q 027929 182 VLRYP 186 (217)
Q Consensus 182 vv~~~ 186 (217)
|||..
T Consensus 136 vv~~~ 140 (144)
T PRK15118 136 IVPLR 140 (144)
T ss_pred EecCC
Confidence 99963
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.89 E-value=1.9e-22 Score=148.85 Aligned_cols=140 Identities=26% Similarity=0.393 Sum_probs=101.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
|+++||||+|+++.+..+++||+.+++..+++|+++||++.......... ...............
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 65 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAA---------------EDEESEEEAEEEEQA 65 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccc---------------cccccccccchhhhh
Confidence 57999999999999999999999999999999999999987643211000 000000000000000
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
............+......+..| ++.+.|++++++.++|+||||+++ ++.+.++ ++||++++|+++++||||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~dliv~G~~~--~~~~~~~---~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 66 RQAEAEEAEAEGGIVIEVVIESG-DVADAIIEFAEEHNADLIVMGSRG--RSGLERL---LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEES-SHHHHHHHHHHHTTCSEEEEESSS--TTSTTTS---SSHHHHHHHHHHTSSEEEEE
T ss_pred hhHHHHHHhhhccceeEEEEEee-ccchhhhhccccccceeEEEeccC--CCCccCC---CcCCHHHHHHHcCCCCEEEe
Confidence 00000112233445556666666 899999999999999999999999 8999999 99999999999999999999
Q ss_pred e
Q 027929 184 R 184 (217)
Q Consensus 184 ~ 184 (217)
|
T Consensus 140 ~ 140 (140)
T PF00582_consen 140 P 140 (140)
T ss_dssp E
T ss_pred C
Confidence 7
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.89 E-value=1e-21 Score=145.11 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=106.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+||||+|+++.+..++++|.++|...+++|+++|+++.+.... . . . .....+..++..+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~-------~---~-------~----~~~~~~~~~~~~~ 59 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS-------P---S-------Q----LEVNVQRARKLLR 59 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC-------c---c-------h----hHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999998643211 0 0 0 0111223334444
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+...|+.++..+..++++.+.|++++++.++|+||||+++ ++.+.+. ++||++.+++++++|||++||
T Consensus 60 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~--~~~~~~~---~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG--STSLRDR---LFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC--CCCccce---ecCchHHHHHhcCCCCEEEeC
Confidence 555556667899888887766899999999999999999999999 8888788 899999999999999999986
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.88 E-value=9.5e-22 Score=147.59 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=101.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+++++|||++|+++.+..++++|+.+|+..+++|+++|+++...... ... ......+.+...+...
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~ 66 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN----QFA----------APMLEDLRSVMQEETQ 66 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch----hhh----------HHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999986532110 000 0011112222222222
Q ss_pred HHHHHHhhhhhhcCceEE-EEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 103 TNAKNIAEPLEEAGLQYK-IHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~-~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
+.++++ ....|+... ..+..| ++.+.|++++++.++||||||+++ ++.+.++ + |++++++++++||||
T Consensus 67 ~~l~~~---~~~~~~~~~~~~~~~G-~~~~~I~~~a~~~~~DLiV~g~~~--~~~~~~~---~--s~a~~v~~~~~~pVL 135 (142)
T PRK10116 67 SFLDKL---IQDADYPIEKTFIAYG-ELSEHILEVCRKHHFDLVICGNHN--HSFFSRA---S--CSAKRVIASSEVDVL 135 (142)
T ss_pred HHHHHH---HHhcCCCeEEEEEecC-CHHHHHHHHHHHhCCCEEEEcCCc--chHHHHH---H--HHHHHHHhcCCCCEE
Confidence 222222 233566554 445556 789999999999999999999999 8888776 4 899999999999999
Q ss_pred EEeCCC
Q 027929 182 VLRYPD 187 (217)
Q Consensus 182 vv~~~~ 187 (217)
|||.++
T Consensus 136 vv~~~~ 141 (142)
T PRK10116 136 LVPLTG 141 (142)
T ss_pred EEeCCC
Confidence 999764
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.88 E-value=5.7e-22 Score=166.79 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=111.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+++++||||+|+|+.+..|+++|+.+|++.+++|+++|+++...... ...... .......+...+..+
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~ 68 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEM--TTLLSP----------DEREAMRQGVISQRT 68 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhh--hcccch----------hHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999976432110 000000 001111111222223
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.++++.+.+...|+.++..+..++++.+.|++++++.++||||||+++ .+.+.+. ++||++++|+++++||||+
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~--~~~~~~~---~~gs~~~~l~~~~~~pvlv 143 (305)
T PRK11175 69 AWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQ--HDKLESV---IFTPTDWHLLRKCPCPVLM 143 (305)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCC--CcHHHhh---ccChhHHHHHhcCCCCEEE
Confidence 3444455555567888888887644899999999999999999999999 8889999 9999999999999999999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||...
T Consensus 144 v~~~~ 148 (305)
T PRK11175 144 VKDQD 148 (305)
T ss_pred ecccc
Confidence 99753
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.85 E-value=1.2e-20 Score=138.46 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=96.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+||||+|+++.+.++++||+.++...+++|+++||.+.... .+.+..++ ..+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------------------------~~~~~~~~----~l~ 52 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN------------------------RLSEAERR----RLA 52 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc------------------------cCCHHHHH----HHH
Confidence 59999999999999999999999999999999999764311 00111111 122
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~ 184 (217)
.+.+.+...++. ..++.++++.+.|++++++.++|+||||+++ ++.+.++ ++||++++|++++ +|||+|++
T Consensus 53 ~~~~~~~~~~~~--~~~~~~~~~~~~I~~~~~~~~~dllviG~~~--~~~~~~~---~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 53 EALRLAEELGAE--VVTLPGDDVAEAIVEFAREHNVTQIVVGKSR--RSRWREL---FRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHcCCE--EEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC--CchHHHH---hcccHHHHHHHhCCCCeEEEeC
Confidence 222333334553 4455566899999999999999999999999 9999999 9999999999999 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.80 E-value=1.3e-18 Score=146.36 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=101.6
Q ss_pred CCCcEEEEEecCChhH-------HHHHHHHHHHhCCC-CCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccc
Q 027929 23 GAQRKIAIAVDLSDES-------AYAVRWAVENYLRP-GDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLD 94 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s-------~~al~~A~~la~~~-~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (217)
..+++||||+|+++.+ ..++++|..+|+.. +++|+++||++...... ....+ .. ......
T Consensus 150 ~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~--~~~~~--~~--------~~~~~~ 217 (305)
T PRK11175 150 PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI--AIELP--EF--------DPSVYN 217 (305)
T ss_pred CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc--ccccc--cc--------chhhHH
Confidence 3578999999998753 68999999999998 99999999986432110 00000 00 001111
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCceE-EEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 95 STETDLTATNAKNIAEPLEEAGLQY-KIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~v~v-~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
+..+....+..+++. ...++.. ...+..| ++.+.|++++++.++||||||+++ ++.+.++ |+||++++|+
T Consensus 218 ~~~~~~~~~~l~~~~---~~~~~~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~~--~~~~~~~---llGS~a~~v~ 288 (305)
T PRK11175 218 DAIRGQHLLAMKALR---QKFGIDEEQTHVEEG-LPEEVIPDLAEHLDAELVILGTVG--RTGLSAA---FLGNTAEHVI 288 (305)
T ss_pred HHHHHHHHHHHHHHH---HHhCCChhheeeccC-CHHHHHHHHHHHhCCCEEEECCCc--cCCCcce---eecchHHHHH
Confidence 111222222222222 2345543 3555667 799999999999999999999999 9999999 9999999999
Q ss_pred cCCCccEEEEeCCC
Q 027929 174 HHCVCPVVVLRYPD 187 (217)
Q Consensus 174 ~~a~~PVlvv~~~~ 187 (217)
++++||||+||+.+
T Consensus 289 ~~~~~pVLvv~~~~ 302 (305)
T PRK11175 289 DHLNCDLLAIKPDG 302 (305)
T ss_pred hcCCCCEEEEcCCC
Confidence 99999999998643
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.79 E-value=5.3e-18 Score=123.64 Aligned_cols=130 Identities=35% Similarity=0.521 Sum_probs=104.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+||||+|+++.+..++++|..+|...+++|+++|+.+....... .+.+......++..+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---------------------~~~~~~~~~~~~~l~ 59 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---------------------ELAELLEEEARALLE 59 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---------------------hHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999765422100 112222233334444
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
.+...+...++.++..+..| ++.+.|++++++.++|+||||+++ ++.+.+. ++|+++++++++++||||++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~dlvvig~~~--~~~~~~~---~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 60 ALREALAEAGVKVETVVLEG-DPAEAILEAAEELGADLIVMGSRG--RSGLRRL---LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHhcCCCceEEEEecC-CCHHHHHHHHHHcCCCEEEEcCCC--CCcccee---eeccHHHHHHhCCCCCEEeC
Confidence 44444455789998898888 469999999999999999999999 8888888 99999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-17 Score=125.26 Aligned_cols=150 Identities=23% Similarity=0.235 Sum_probs=113.0
Q ss_pred CCCCcEEEEEec-CChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 22 NGAQRKIAIAVD-LSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 22 ~~~~~~IlVavD-~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
..++++|++++| +++.+..++.++..++...+..+.+++|.+............... ............
T Consensus 2 ~~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 71 (154)
T COG0589 2 PAMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADA----------PIPLSEEELEEE 71 (154)
T ss_pred ccccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccc----------hhhhhHHHHHHH
Confidence 357899999999 999999999999999999999999999987654321111000000 001111222333
Q ss_pred HHHHHHHHhhhhhhcCce-EEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCcc
Q 027929 101 TATNAKNIAEPLEEAGLQ-YKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCP 179 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~P 179 (217)
..+..+.+.+.+...++. +...+..|....+.|+.++++.++|+||||+++ ++.+.++ ++||++++++++++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g--~~~l~~~---llGsvs~~v~~~~~~p 146 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG--RSGLSRL---LLGSVAEKVLRHAPCP 146 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC--Cccccce---eeehhHHHHHhcCCCC
Confidence 344445555556667877 588889995447999999999999999999999 9999998 9999999999999999
Q ss_pred EEEEeCC
Q 027929 180 VVVLRYP 186 (217)
Q Consensus 180 Vlvv~~~ 186 (217)
|+++|..
T Consensus 147 Vlvv~~~ 153 (154)
T COG0589 147 VLVVRSE 153 (154)
T ss_pred EEEEccC
Confidence 9999865
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.53 E-value=1.5e-13 Score=117.51 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=88.7
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCC--CCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRP--GDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETD 99 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~--~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (217)
+++++|||||+|+|+.+.+|+++|+.+|+.. +++|++|||++...... . ........++
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---~----------------~~~~~~~~ee 62 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---E----------------GQDELAAAEE 62 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---c----------------hhHHHHHHHH
Confidence 5789999999999999999999999999884 69999999987532110 0 0011111111
Q ss_pred HHHHHHHHHhhhh--hhcCceEEEEEeec-------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhH
Q 027929 100 LTATNAKNIAEPL--EEAGLQYKIHIVKD-------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSD 170 (217)
Q Consensus 100 ~~~~~~~~~~~~~--~~~~v~v~~~v~~g-------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~ 170 (217)
..++..+.+.+.+ ...|++++..++.+ +++++.|+++|++.++|+||||..= ...-.-. ++-.. +
T Consensus 63 lle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~--~~~~~~~---~~~~~-~ 136 (357)
T PRK12652 63 LLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY--NPGGTAP---MLQPL-E 136 (357)
T ss_pred HHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC--CCCCCCc---ccchH-H
Confidence 1111111111111 22589999998772 4899999999999999999999763 1111111 33333 3
Q ss_pred HHhcCCCccEEEEeCC
Q 027929 171 YCVHHCVCPVVVLRYP 186 (217)
Q Consensus 171 ~ll~~a~~PVlvv~~~ 186 (217)
.-+.++.|.+=.-|-.
T Consensus 137 ~~~~~~~~~~~~~~~~ 152 (357)
T PRK12652 137 RELARAGITYEEAPVE 152 (357)
T ss_pred HHHHhcCCceecCCcc
Confidence 4455566666444433
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.32 E-value=4.5e-11 Score=114.07 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=97.0
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
....+|||||++++.+.+++++|.++|.+.++++++|||..+... .+.......+.
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~------------------------~~~~~~~~~l~ 303 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLH------------------------RLPEKKRRAIL 303 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcC------------------------cCCHHHHHHHH
Confidence 456789999999999999999999999999999999999653211 01111111111
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVl 181 (217)
+.. +++ +..|.+ +.++.|++++++|+++|++.+++.||||.++ ++++ + +.||+++++++.++ ..|.
T Consensus 304 ~~~-~lA---~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~--~~~~--~---~~~s~~~~l~r~~~~idi~ 370 (895)
T PRK10490 304 SAL-RLA---QELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRA--SRRW--W---RRESFADRLARLGPDLDLV 370 (895)
T ss_pred HHH-HHH---HHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCC--CCCC--c---cCCCHHHHHHHhCCCCCEE
Confidence 222 122 223554 6677888999999999999999999999988 6655 5 57899999999976 9999
Q ss_pred EEeCCC
Q 027929 182 VLRYPD 187 (217)
Q Consensus 182 vv~~~~ 187 (217)
||+...
T Consensus 371 iv~~~~ 376 (895)
T PRK10490 371 IVALDE 376 (895)
T ss_pred EEeCCc
Confidence 997554
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-10 Score=102.66 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=103.7
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
.....+|||||++++.+.+.+++|.++|.+.++++++|||..+..... .+......
T Consensus 245 ~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~------------------------~~~~~~~l 300 (890)
T COG2205 245 WAARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL------------------------SEKEARRL 300 (890)
T ss_pred ccccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc------------------------cHHHHHHH
Confidence 345579999999999999999999999999999999999965432210 01111111
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPV 180 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PV 180 (217)
.+ ..++++ .+..++.++.|.+++++|++||+..++.-||||.+. ++++.+. |.||.++++++..+ ..|
T Consensus 301 ~~-~~~Lae-----~lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~--~~rw~~~---~~~~l~~~L~~~~~~idv 369 (890)
T COG2205 301 HE-NLRLAE-----ELGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSR--RSRWRRL---FKGSLADRLAREAPGIDV 369 (890)
T ss_pred HH-HHHHHH-----HhCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCc--chHHHHH---hcccHHHHHHhcCCCceE
Confidence 11 123333 233467888888999999999999999999999999 8999898 89999999999975 999
Q ss_pred EEEeCCCCC
Q 027929 181 VVLRYPDDS 189 (217)
Q Consensus 181 lvv~~~~~~ 189 (217)
.+|+.....
T Consensus 370 ~ii~~~~~~ 378 (890)
T COG2205 370 HIVALDAPP 378 (890)
T ss_pred EEeeCCCCc
Confidence 999876554
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.47 E-value=9.4e-07 Score=60.36 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=71.9
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHH
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKN 107 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 107 (217)
|+|+++++..|..++.++.+++ ..+..++++|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 557788888882
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCcccc-chhHHHhcCCCccEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLG-SVSDYCVHHCVCPVVV 182 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~g-S~s~~ll~~a~~PVlv 182 (217)
...+.+.+++++.++|+|++|.+. ....... +.| +++.++++.++|||+.
T Consensus 35 --------------------~~~~~~~~~a~~~~~~~Iv~G~~~--~d~~~~~---~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 --------------------AFVRILKRLAAEEGADVIILGHNA--DDVAGRR---LGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred --------------------HHHHHHHHHHHHcCCCEEEEcCCc--hhhhhhc---cCchhhhhhcccccCCceeC
Confidence 256678888889999999999998 7777776 677 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.64 E-value=0.0017 Score=62.07 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=86.4
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHH--hCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCC--ccccccchHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVEN--YLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGG--WGGIQLDSTE 97 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~l--a~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 97 (217)
...--|||+|+...++-...+..+-.. ..+..-.|+++|.++-.....+..-.-...........+ ...+++..++
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af 534 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 534 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHH
Confidence 344569999999888777777654332 223345799999988543211100000000000000000 0011111111
Q ss_pred HHHHHHHHHHHhhhhhhcCceEEEEEe--ecCChHHHHHHHHHHcCCCEEEEecCCCCCCccccc---CCccccchhHHH
Q 027929 98 TDLTATNAKNIAEPLEEAGLQYKIHIV--KDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRS---SVGRLGSVSDYC 172 (217)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~v~v~~~v~--~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~---~~~~~gS~s~~l 172 (217)
+. +.+.. .++.++.... .-.+..+.||..|+++++++||++-+. +....+. ....++.+.+++
T Consensus 535 ~~--------~~~~~--~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk--~~~~dg~~~~~~~~~r~~n~~V 602 (832)
T PLN03159 535 EN--------YEQHA--GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHK--QQTVDGGMEATNPAFRGVNQNV 602 (832)
T ss_pred HH--------HHhhc--CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCC--ccCCCCCccccCchHHHHHHHH
Confidence 11 11111 2466654443 334789999999999999999999986 3222211 112456788999
Q ss_pred hcCCCccEEEEeCCCC
Q 027929 173 VHHCVCPVVVLRYPDD 188 (217)
Q Consensus 173 l~~a~~PVlvv~~~~~ 188 (217)
+++++|+|-|.=+.+.
T Consensus 603 L~~ApCsVgIlVDRg~ 618 (832)
T PLN03159 603 LANAPCSVGILVDRGL 618 (832)
T ss_pred HccCCCCEEEEEeCCC
Confidence 9999999998866553
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.42 E-value=0.015 Score=55.69 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeC
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQT 64 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~ 64 (217)
....+|.+..=|.++.+.||.||.+++.+.+..++++|....
T Consensus 628 ~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 628 QVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred ccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 345699999999999999999999999999999999999864
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.81 E-value=0.02 Score=44.66 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=60.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+|+|+++|..+|..++..+..++...+.++.++|+-.... . -.... .+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~------------------------~-~~~~~-------~~ 48 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLR------------------------P-ESDEE-------AE 48 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC------------------------h-hHHHH-------HH
Confidence 5899999999999999998888766677899999832110 0 00000 11
Q ss_pred HHhhhhhhcCceEEEEEeec--------CChH--------HHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD--------HDMK--------ERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g--------~~~~--------~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+.+...|+++....... .... ..+.++|++++++.|+.|.+.
T Consensus 49 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 49 FVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred HHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 12222333566655443321 1122 578889999999999999876
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.43 E-value=0.05 Score=42.31 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+|+|++.|..+|..++..+..+....+.++.++||-..-. . -.....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~------------------------~-~s~~~~~------- 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR------------------------E-ESDEEAE------- 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS------------------------C-CHHHHHH-------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC------------------------c-ccchhHH-------
Confidence 6999999999999999999999998899999999953210 0 0011111
Q ss_pred HHhhhhhhcCceEEEEEee-----cCCh--------HHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVK-----DHDM--------KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~-----g~~~--------~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+.+...|+.+.+.... +... .+.+.++|.+.+++.|++|-+.
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 2223334457776666554 1111 1357788999999999999774
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=95.74 E-value=0.14 Score=39.62 Aligned_cols=36 Identities=31% Similarity=0.247 Sum_probs=31.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+|+++|..+|..++.++.......+.+|.++|+-
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id 36 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVD 36 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 589999999999999999988876667789999994
No 23
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.32 Score=36.71 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=51.2
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHH---HHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEV---ERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a---~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+.++.+.++|+.++.+|+..+...+.+.+|+ ++.++..||-|+.+ -..+.++ +...++.||+-|
T Consensus 20 ~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGg--AAHLPGm-----------vAa~T~lPViGV 86 (162)
T COG0041 20 KAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGG--AAHLPGM-----------VAAKTPLPVIGV 86 (162)
T ss_pred HHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcc--hhhcchh-----------hhhcCCCCeEec
Confidence 3344556689999999999877777776666 56788889999887 4444433 345678999999
Q ss_pred eCCCCCC
Q 027929 184 RYPDDSR 190 (217)
Q Consensus 184 ~~~~~~~ 190 (217)
|-....-
T Consensus 87 Pv~s~~L 93 (162)
T COG0041 87 PVQSKAL 93 (162)
T ss_pred cCccccc
Confidence 8765443
No 24
>PRK12342 hypothetical protein; Provisional
Probab=94.07 E-value=0.54 Score=38.78 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=52.7
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
-.++....|++.|+++. +.+.+|+++++-+.... . . .+.+.+
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~-----------------------~---~-----------~l~r~a 73 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ-----------------------N---S-----------KVRKDV 73 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh-----------------------H---H-----------HHHHHH
Confidence 46688999999999999 67899999999543210 0 0 000111
Q ss_pred hhcCce----EEEEEeecCCh---HHHHHHHHHHcCCCEEEEecCC
Q 027929 113 EEAGLQ----YKIHIVKDHDM---KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 113 ~~~~v~----v~~~v~~g~~~---~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
...|.. +.-....|.|. +..|..+++..++|||++|..+
T Consensus 74 lamGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s 119 (254)
T PRK12342 74 LSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS 119 (254)
T ss_pred HHcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 112443 22222334455 6789999998899999999775
No 25
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=93.95 E-value=0.5 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=30.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCC--CCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRP--GDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~--~~~l~lvhV~ 62 (217)
+|+|++.|...|..++..+..+.... +.+++++|+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58999999999999998888876554 5688999985
No 26
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=93.85 E-value=0.58 Score=35.56 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=50.3
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHH---HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVE---RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~---~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
.++....++..|+.++..+..-+...+.+.++++ +.+++.||.++.. ...+.+ -+..++..||+
T Consensus 14 ~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~--aa~Lpg-----------vva~~t~~PVI 80 (156)
T TIGR01162 14 MKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGG--AAHLPG-----------MVAALTPLPVI 80 (156)
T ss_pred HHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCc--cchhHH-----------HHHhccCCCEE
Confidence 3445555667899999999988777777777765 4678888888765 333332 35567889999
Q ss_pred EEeCCCC
Q 027929 182 VLRYPDD 188 (217)
Q Consensus 182 vv~~~~~ 188 (217)
-||-...
T Consensus 81 gvP~~~~ 87 (156)
T TIGR01162 81 GVPVPSK 87 (156)
T ss_pred EecCCcc
Confidence 9997653
No 27
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=93.83 E-value=0.63 Score=35.37 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=55.2
Q ss_pred EEEEEecCC-----hhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 27 KIAIAVDLS-----DESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 27 ~IlVavD~s-----~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
+|||-++.. +.+..++..|.+++...+.+|+++.+-+... ..+.
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~--------------------------~~~~----- 49 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE--------------------------AAEA----- 49 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC--------------------------HHHH-----
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh--------------------------hHHH-----
Confidence 356666543 7899999999999999999999998842110 0111
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeec-------CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKD-------HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g-------~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.+..+|..--+.+-.. ......|.+.+++.++|+|++|...
T Consensus 50 ------l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 50 ------LRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp ------HHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred ------HhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 1111222466433333221 1246689999999999999999764
No 28
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=93.68 E-value=0.45 Score=37.21 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=27.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
+++|++++-|+-.+.++.++...+.+ .+.+|.++
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv 34 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVL 34 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 57999999999999999998777764 46665543
No 29
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=93.45 E-value=1.1 Score=40.29 Aligned_cols=125 Identities=6% Similarity=0.045 Sum_probs=70.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
....++|++++.|+-.+.++++++..+. +.+.+|.++-- ... .++.
T Consensus 67 ~l~~k~IllgVtGsIAayka~~lvr~L~-k~G~~V~VvmT---~sA------------------------------~~fv 112 (475)
T PRK13982 67 SLASKRVTLIIGGGIAAYKALDLIRRLK-ERGAHVRCVLT---KAA------------------------------QQFV 112 (475)
T ss_pred ccCCCEEEEEEccHHHHHHHHHHHHHHH-hCcCEEEEEEC---cCH------------------------------HHHh
Confidence 3457899999999999999999977776 45777554432 211 0111
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCC-hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHD-MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~-~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.... + +.+ .+..+........+ ..-.=+++++ .+|++|+.--. .+.+.++-.++-.+....++....+||
T Consensus 113 ~p~~--~-~~l--s~~~V~~d~~~~~~~~~~~Hi~la~--~aD~~vVAPAT--ANTIAKiA~GiADnLlt~v~La~~~Pv 183 (475)
T PRK13982 113 TPLT--A-SAL--SGQRVYTDLFDPESEFDAGHIRLAR--DCDLIVVAPAT--ADLMAKMANGLADDLASAILLAANRPI 183 (475)
T ss_pred hHHH--H-HHh--cCCceEecCCCcccccCccchhhhh--hcCEEEEeeCC--HHHHHHHHccccCcHHHHHHHhcCCCE
Confidence 1100 0 001 12223222211100 0001134443 48999998777 777777644444444455666789999
Q ss_pred EEEeCCCCC
Q 027929 181 VVLRYPDDS 189 (217)
Q Consensus 181 lvv~~~~~~ 189 (217)
+++|.-...
T Consensus 184 liaPaMN~~ 192 (475)
T PRK13982 184 LLAPAMNPL 192 (475)
T ss_pred EEEEcCCHH
Confidence 999975544
No 30
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.21 E-value=0.82 Score=40.85 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=71.7
Q ss_pred EEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 28 IAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 28 IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
||+=. |+.-....||.+|+..|.+.+.+|+.|+++++.... .......++.+.+
T Consensus 25 vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~------------------------~~~~r~~Fl~esL 80 (454)
T TIGR00591 25 VVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA------------------------ATRRHYFFMLGGL 80 (454)
T ss_pred EEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc------------------------ccHHHHHHHHHHH
Confidence 44444 777788899999988776667789999998653210 0244556677777
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.++.+.+.+.|+.. .+..| ++.+.|.+.+++.+++.|+.-..
T Consensus 81 ~~L~~~L~~~g~~L--~v~~g-~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 81 DEVANECERLIIPF--HLLDG-PPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHHcCCce--EEeec-ChHHHHHHHHHHcCCCEEEEecc
Confidence 78888888777765 56677 78999999999999999999864
No 31
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=92.97 E-value=0.85 Score=34.50 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHc---CCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERL---GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~---~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
.++....++..|+.++.++...+...+.+.+++++. +++.+|.++.. ...+ .--+...+.+||+
T Consensus 16 ~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~--~a~L-----------pgvva~~t~~PVI 82 (150)
T PF00731_consen 16 AEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGM--SAAL-----------PGVVASLTTLPVI 82 (150)
T ss_dssp HHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEES--S--H-----------HHHHHHHSSS-EE
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCC--cccc-----------hhhheeccCCCEE
Confidence 344555566689999999998877788888888764 56877777665 3333 2235556789999
Q ss_pred EEeCCCC
Q 027929 182 VLRYPDD 188 (217)
Q Consensus 182 vv~~~~~ 188 (217)
-||-...
T Consensus 83 gvP~~~~ 89 (150)
T PF00731_consen 83 GVPVSSG 89 (150)
T ss_dssp EEEE-ST
T ss_pred EeecCcc
Confidence 9986544
No 32
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=92.69 E-value=1 Score=34.24 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||..| .+.+.+|+.|+++++.... ..........++.+.+..+.+.+
T Consensus 8 DLRl~DN~aL~~A----~~~~~~v~~vfv~d~~~~~---------------------~~~~~~~r~~Fl~~sL~~L~~~L 62 (165)
T PF00875_consen 8 DLRLHDNPALHAA----AQNGDPVLPVFVFDPEEFH---------------------PYRIGPRRRRFLLESLADLQESL 62 (165)
T ss_dssp --SSTT-HHHHHH----HHTTSEEEEEEEE-HHGGT---------------------TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHH----HHcCCCeEEEEEecccccc---------------------cccCcchHHHHHHHHHHHHHHHH
Confidence 4444556667766 3457789999998764110 00223556677778888888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
...|+. ..++.| ++.+.|.+.+++.+++.|++-..- ....+. ..-.+ .+.+....+.+..+..
T Consensus 63 ~~~g~~--L~v~~g-~~~~~l~~l~~~~~~~~V~~~~~~---~~~~~~---rd~~v-~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 63 RKLGIP--LLVLRG-DPEEVLPELAKEYGATAVYFNEEY---TPYERR---RDERV-RKALKKHGIKVHTFDD 125 (165)
T ss_dssp HHTTS---EEEEES-SHHHHHHHHHHHHTESEEEEE------SHHHHH---HHHHH-HHHHHHTTSEEEEE--
T ss_pred HhcCcc--eEEEec-chHHHHHHHHHhcCcCeeEecccc---CHHHHH---HHHHH-HHHHHhcceEEEEECC
Confidence 887875 678888 689999999999999999988653 222222 12223 3445555777776654
No 33
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.66 E-value=2.8 Score=34.46 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=31.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCC--CCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRP--GDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~--~~~l~lvhV~ 62 (217)
....+|+|++.|..+|...+.++..+.... +-+|.++|+-
T Consensus 27 ~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 27 EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 356799999999999999998887776543 3478888873
No 34
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=92.64 E-value=1.1 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=26.3
Q ss_pred cCChhHHHHHHHHHHHhCCCC-CeEEEEEEEe
Q 027929 33 DLSDESAYAVRWAVENYLRPG-DAVVLLHVRQ 63 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~-~~l~lvhV~~ 63 (217)
-.++....|++.|+++..+.+ .+|++|++-+
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp 64 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGG 64 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECC
Confidence 356789999999999998865 7999999954
No 35
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=92.49 E-value=1.3 Score=34.78 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=28.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
+++|++++.|+-.+.++++.+..+.+..+.+|.++
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 57999999999999999999888875457664443
No 36
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=92.35 E-value=0.91 Score=35.31 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=25.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
++|++++.|+..+.++.++.-.+. +.+.+|+++
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEE
Confidence 589999999999999998766664 446665433
No 37
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=92.19 E-value=0.24 Score=36.23 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=65.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
+||++++.|+.....+.++...+.+. |.+|.++-- +. ..++.....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S---~~------------------------------A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLS---PS------------------------------AERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEES---HH------------------------------HHHHSHHHG
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEEC---Cc------------------------------HHHHhhhhc
Confidence 58999999999999988887777765 777554432 11 111111110
Q ss_pred HHHhhhhhhcCceEEEE---EeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC---Ccc
Q 027929 106 KNIAEPLEEAGLQYKIH---IVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCP 179 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~---v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~P 179 (217)
..+-.+... ...+ +...- ++.. ..+|++|+.--. .+.+.++..++-.+....++..+ .+|
T Consensus 47 --------~~~~~v~~~~~~~~~~-~~~~~-~~~~--~~~D~~vVaPaT--~NtlaKiA~GiaD~l~~~~~~~~l~~~~p 112 (129)
T PF02441_consen 47 --------LTGEPVYTDWDTWDRG-DPAEH-IELS--RWADAMVVAPAT--ANTLAKIANGIADNLLTRVALAALKEGKP 112 (129)
T ss_dssp --------HCCSCEECTHCTCSTT-TTTCH-HHHH--HTESEEEEEEEE--HHHHHHHHTT--SSHHHHHHHHHHHTTCG
T ss_pred --------cccchhhhccccCCCC-CCcCc-cccc--ccCCEEEEcccC--HHHHHHHHhCCcchHHHHHHHHHccCCCC
Confidence 011111111 1112 22222 3333 359999999877 77777775556666777777777 999
Q ss_pred EEEEeC
Q 027929 180 VVVLRY 185 (217)
Q Consensus 180 Vlvv~~ 185 (217)
|+++|.
T Consensus 113 vvi~P~ 118 (129)
T PF02441_consen 113 VVIAPA 118 (129)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999985
No 38
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.12 E-value=1.3 Score=38.94 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=69.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
...++|++++-|+-.+.+++++...+. +.+.+|.++- +... .++..
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~---T~~A------------------------------~~fi~ 49 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVM---TEAA------------------------------KKFVT 49 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE---CHhH------------------------------HHHHh
Confidence 456899999999999999999877775 4577655433 2211 11111
Q ss_pred HHHHHHhhhhhhcCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
... .+.+. +-.+....... ....+ =++.++ .+|++|+.--. .+.+.++-.++-.+....++..+.+||
T Consensus 50 ~~~---l~~l~--~~~V~~~~~~~~~~~~~~-hi~l~~--~aD~~vVaPaT--aNtlaKiA~GiaDnllt~~~la~~~pv 119 (399)
T PRK05579 50 PLT---FQALS--GNPVSTDLWDPAAEAAMG-HIELAK--WADLVLIAPAT--ADLIAKLAHGIADDLLTTTLLATTAPV 119 (399)
T ss_pred HHH---HHHhh--CCceEccccccccCCCcc-hhhccc--ccCEEEEeeCC--HHHHHHHHcccCCcHHHHHHHhcCCCE
Confidence 100 01111 22222221111 01111 123332 58999998777 777877755555555566666779999
Q ss_pred EEEeCCCC
Q 027929 181 VVLRYPDD 188 (217)
Q Consensus 181 lvv~~~~~ 188 (217)
+++|.-..
T Consensus 120 vi~Pamn~ 127 (399)
T PRK05579 120 LVAPAMNT 127 (399)
T ss_pred EEEeCCCh
Confidence 99995443
No 39
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.81 E-value=3.6 Score=34.27 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=32.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
..+|+||+.|..+|..++..+..+... ..+.++||..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~ 57 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDH 57 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecC
Confidence 579999999999999999988877765 8899999954
No 40
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=91.02 E-value=5.3 Score=30.79 Aligned_cols=34 Identities=29% Similarity=0.219 Sum_probs=24.8
Q ss_pred EEEEEec---------CChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 27 KIAIAVD---------LSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 27 ~IlVavD---------~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
+|+|.++ ..+.+..++..|.+++. .+.+|.++.+
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 4677776 56778899999999876 5567766665
No 41
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=90.52 E-value=3 Score=33.39 Aligned_cols=35 Identities=11% Similarity=-0.136 Sum_probs=27.2
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
.+.++|++++-||-.+.++.+....+- + +.+|.++
T Consensus 17 ~~~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~Vv 51 (209)
T PLN02496 17 PRKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 51 (209)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEE
Confidence 567899999999999999999766664 4 6666444
No 42
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=90.43 E-value=2.8 Score=36.80 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=66.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
..++|++++.|+-.+.++++++..+. +.+.+|.++-- .. ..++...
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~-~~g~~V~vv~T---~~------------------------------A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELV-RQGAEVKVIMT---EA------------------------------AKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEEC---Hh------------------------------HHHHHHH
Confidence 45799999999999999999887775 44777654432 11 1111111
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
.. + +.+ .+..+.......... ..+ ...-...+|++|+.--. .+.+.++-.++-.+....++..+.+|++++
T Consensus 48 ~~--l-~~~--~~~~v~~~~~~~~~~-~~~-hi~l~~~aD~~vVaPaT--anTlaKiA~GiaDnLlt~~~~~~~~plvia 118 (390)
T TIGR00521 48 LT--L-EAL--SGHKVVTELWGPIEH-NAL-HIDLAKWADLILIAPAT--ANTISKIAHGIADDLVSTTALAASAPIILA 118 (390)
T ss_pred HH--H-HHh--hCCceeehhcccccc-ccc-hhhcccccCEEEEecCC--HHHHHHHHcccCCcHHHHHHHHhCCCEEEE
Confidence 10 0 001 122222111111010 011 22222368888888776 677777644444455555555566999999
Q ss_pred eCCCCC
Q 027929 184 RYPDDS 189 (217)
Q Consensus 184 ~~~~~~ 189 (217)
|.-.+.
T Consensus 119 Pamn~~ 124 (390)
T TIGR00521 119 PAMNEN 124 (390)
T ss_pred eCCChh
Confidence 984443
No 43
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=89.18 E-value=3.1 Score=37.12 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHh-CCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENY-LRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la-~~~~~~l~lvhV~ 62 (217)
+..+|+|++.|..+|...+.....+. ...+.+|+++||.
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvn 53 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVH 53 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 45789999999999999888877654 3356799999994
No 44
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=88.95 E-value=4 Score=36.76 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=62.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||..|+. .+.+|+.|+++++..... .........++-+.+.++.+.+
T Consensus 10 DLRl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~---------------------~~~~~~r~~Fl~esL~~L~~~L 64 (471)
T TIGR03556 10 DLRLSDNIGLAAARQ----QSAKVVGLFCLDPNILQA---------------------DDMAPARVAYLIGCLQELQQRY 64 (471)
T ss_pred CCCcchHHHHHHHHh----cCCCEEEEEEEchhhhcc---------------------ccCCHHHHHHHHHHHHHHHHHH
Confidence 555567778887764 346799999987532110 0112333466667777788888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
...|+.. .+..| ++.+.|.+.+++.+++.|+.-..
T Consensus 65 ~~~G~~L--~v~~G-~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 65 QQAGSQL--LILQG-DPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHCCCCe--EEEEC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 8777755 66678 78999999999999999997654
No 45
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=88.35 E-value=6 Score=35.05 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=65.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||.+|+..+ .+|+.|+|+++.......++ ...........++.+.++++.+.+
T Consensus 10 DLRl~DN~aL~~A~~~~----~~vl~vfi~dp~~~~~~~~~---------------~~~~~~~~r~~Fl~esL~~L~~~L 70 (429)
T TIGR02765 10 DLRVHDNPALYKASSSS----DTLIPLYCFDPRQFKLTHFF---------------GFPKTGPARGKFLLESLKDLRTSL 70 (429)
T ss_pred CCccccHHHHHHHHhcC----CeEEEEEEECchHhcccccc---------------ccCCCCHHHHHHHHHHHHHHHHHH
Confidence 56667778888777543 47999999875422100000 001123455667777888888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+.|+.. .+..| ++.+.|.+.+++.+++.|+.-..
T Consensus 71 ~~~g~~L--~v~~G-~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 71 RKLGSDL--LVRSG-KPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHcCCCe--EEEeC-CHHHHHHHHHHHhCCCEEEEecc
Confidence 8877765 55677 68999999999999999998844
No 46
>PLN00200 argininosuccinate synthase; Provisional
Probab=88.20 E-value=1.6 Score=38.53 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+.+|+|++.|.-.|.-++.|+.. ..+.+|+.+|+-
T Consensus 3 ~~~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id 39 (404)
T PLN00200 3 GKLNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTAD 39 (404)
T ss_pred CCCCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEE
Confidence 4568999999999999999888755 236789999984
No 47
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=88.18 E-value=4.6 Score=33.45 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=63.4
Q ss_pred ecCChhHHHHHHHHHHHhC-CCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhh
Q 027929 32 VDLSDESAYAVRWAVENYL-RPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAE 110 (217)
Q Consensus 32 vD~s~~s~~al~~A~~la~-~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (217)
...++.+..|++.|+++.. ..+.+|+++++-++.. . ..+.
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------------~----~~lr------------ 73 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------------E----EALR------------ 73 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------------H----HHHH------------
Confidence 3456788999999999998 6899999999954321 1 1111
Q ss_pred hhhhcCceEEEEE----eecC---ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 111 PLEEAGLQYKIHI----VKDH---DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 111 ~~~~~~v~v~~~v----~~g~---~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
.+-..|..=-+.+ ..+. ..+..|...++..+.|||++|... . .. -.|-+.-.+......|.+.
T Consensus 74 ~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa--~----D~---~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 74 EALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQA--I----DG---DTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred HHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEeccc--c----cC---CccchHHHHHHHhCCceee
Confidence 1112344322222 2232 346678888999999999999765 2 11 2244555555556666554
No 48
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=88.17 E-value=7.1 Score=31.98 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=28.6
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+.+++|++.|.-+|.-++.++.+. +.++..||+.
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~ 45 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVV 45 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEec
Confidence 3578999999999998888877664 6678899984
No 49
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=87.11 E-value=12 Score=31.68 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=30.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+.+++|++.|...|.-.+..|.+.....+.++.+||+-
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 56899999999999999998877654445578899984
No 50
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.14 E-value=11 Score=29.75 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=52.2
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHH
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKN 107 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 107 (217)
++|+-.|.--..-+.+.|.++..+ +..|.++.. +.. + -...++++.+++
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~-D~~------------------------R----~ga~eQL~~~a~- 53 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISA-DTY------------------------R----IGAVEQLKTYAE- 53 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-STS------------------------S----THHHHHHHHHHH-
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecC-CCC------------------------C----ccHHHHHHHHHH-
Confidence 456667777778888888888877 889998887 211 1 111112222222
Q ss_pred HhhhhhhcCceEEEEEeecCChHHH---HHHHHHHcCCCEEEEecCCCCCCccccc
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKER---LCLEVERLGLSAMIMGGRGIGIGAVRRS 160 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~---I~~~a~~~~~dlIVlG~~~~~~~~~~~~ 160 (217)
..|+.+... ....++.+. .++..+..++|+|++-+.| ++.....
T Consensus 54 ------~l~vp~~~~-~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~G--r~~~d~~ 100 (196)
T PF00448_consen 54 ------ILGVPFYVA-RTESDPAEIAREALEKFRKKGYDLVLIDTAG--RSPRDEE 100 (196)
T ss_dssp ------HHTEEEEES-STTSCHHHHHHHHHHHHHHTTSSEEEEEE-S--SSSTHHH
T ss_pred ------Hhccccchh-hcchhhHHHHHHHHHHHhhcCCCEEEEecCC--cchhhHH
Confidence 125544321 112244443 4455556789999999999 7765544
No 51
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.34 E-value=19 Score=30.92 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=63.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
..++--++|+|+|.--....-..|.++- +.|-.|.+.-. +.++.-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~---------------------------------DTFRAaA 182 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAG---------------------------------DTFRAAA 182 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEec---------------------------------chHHHHH
Confidence 3455667888999877777767655555 56777766655 2222333
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHH---HHHHHHHcCCCEEEEecCCCCCCccccc
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKER---LCLEVERLGLSAMIMGGRGIGIGAVRRS 160 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~---I~~~a~~~~~dlIVlG~~~~~~~~~~~~ 160 (217)
.++++.+.+ +.|+.+-..- .|.|++.. -+++|+..++|+|++-+.| |-.....
T Consensus 183 iEQL~~w~e---r~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAG--RLhnk~n 238 (340)
T COG0552 183 IEQLEVWGE---RLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAG--RLHNKKN 238 (340)
T ss_pred HHHHHHHHH---HhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcc--cccCchh
Confidence 333333333 2466655433 67777754 4677888999999999998 7666655
No 52
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=84.29 E-value=11 Score=29.62 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=25.4
Q ss_pred cEEEEEecCChhHHHHH-HHHHHHhCCCCCeEEEEE
Q 027929 26 RKIAIAVDLSDESAYAV-RWAVENYLRPGDAVVLLH 60 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al-~~A~~la~~~~~~l~lvh 60 (217)
++|++++.|+-.+.+++ +..-.+ .+.+.+|+++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 58999999999999997 655555 45577765443
No 53
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=83.66 E-value=20 Score=31.23 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
-+...+++|++.|.-+|--++-++.+ .|.+|+++|+.
T Consensus 169 ~g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~ 205 (371)
T TIGR00342 169 VGTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFF 205 (371)
T ss_pred cCcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEe
Confidence 45668999999999888887765533 47899999996
No 54
>PRK13820 argininosuccinate synthase; Provisional
Probab=83.30 E-value=22 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=29.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCC-eEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGD-AVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~-~l~lvhV~ 62 (217)
++++|+|++.|.-+|.-++.|+.. ..+. +|+.+|+.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd 37 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVD 37 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEE
Confidence 468999999999999999988644 2464 89999995
No 55
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=82.95 E-value=13 Score=29.25 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=26.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
|++|++.|...|.-++.++.+ .+.+|+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~ 33 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLT 33 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEe
Confidence 578999999999998888777 356777777653
No 56
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=82.66 E-value=7.9 Score=35.87 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=49.9
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHH---HHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLE---VERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~---a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.+++....+...|+.++..|..-+...+.+.++ +++.+++.||.++.. ...+.+ -+..++.+||
T Consensus 425 ~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~--~~~l~~-----------~~a~~t~~pv 491 (577)
T PLN02948 425 TMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGG--AAHLPG-----------MVASMTPLPV 491 (577)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCc--cccchH-----------HHhhccCCCE
Confidence 344555666778999999988876666655555 456789988888765 333332 3556788999
Q ss_pred EEEeCCCC
Q 027929 181 VVLRYPDD 188 (217)
Q Consensus 181 lvv~~~~~ 188 (217)
+-||-...
T Consensus 492 i~vp~~~~ 499 (577)
T PLN02948 492 IGVPVKTS 499 (577)
T ss_pred EEcCCCCC
Confidence 99997543
No 57
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=82.23 E-value=19 Score=32.49 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=64.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....+|..|+..+ +.+|+.|+|+++.... ..........++.+.+.++.+.+
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~---------------------~~~~~~~r~~Fl~esL~~L~~~L 66 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWA---------------------AHDMAPRQAAFINAQLNALQIAL 66 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhc---------------------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 66667788888776543 2469999998764221 00122445567777788888888
Q ss_pred hhcCceEEEEEeec---CChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKD---HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g---~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+.|+.. .++.| +++.+.|.+.+++.+++-|+.-..
T Consensus 67 ~~~g~~L--~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 67 AEKGIPL--LFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHcCCce--EEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 8888765 55544 268999999999999999988754
No 58
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.94 E-value=5.6 Score=33.72 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=34.2
Q ss_pred EEeecCChHHHHHHHHHHc-------CCCEEEEecCCCCCCcccccCCccccchhHHHh---cCCCccEEEE
Q 027929 122 HIVKDHDMKERLCLEVERL-------GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV---HHCVCPVVVL 183 (217)
Q Consensus 122 ~v~~g~~~~~~I~~~a~~~-------~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll---~~a~~PVlvv 183 (217)
..+.|......|++..+.. ++|+||+++.| |.+.++ .. =+.+.|+ ..+++||+.-
T Consensus 49 ~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG---Gs~eDL---~~-FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 49 ASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG---GSIEDL---WA-FNDEEVARAIAASPIPVISA 113 (319)
T ss_pred ccccccchHHHHHHHHHHHHhccccccccEEEEecCC---CChHHh---cc-cChHHHHHHHHhCCCCEEEe
Confidence 3456766677777766654 48999999777 555554 22 1333344 4577887654
No 59
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=80.53 E-value=24 Score=28.86 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=60.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE-EeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV-RQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATN 104 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (217)
...-||..+.-..-..++.++.+|++.|..|- .|. +|.... ++ . +....-.+.+.+.+..+
T Consensus 28 ~saNIACG~HAGDp~~M~~tv~lA~~~gV~iG-AHPsyPD~~g----FG--R-----------r~m~~s~~el~~~v~yQ 89 (242)
T PF03746_consen 28 SSANIACGFHAGDPETMRRTVRLAKEHGVAIG-AHPSYPDREG----FG--R-----------RSMDISPEELRDSVLYQ 89 (242)
T ss_dssp SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEE-EE---S-TTT----TT--------------S-----HHHHHHHHHHH
T ss_pred hhHHHhhcccccCHHHHHHHHHHHHHcCCEec-cCCCCCCCCC----CC--C-----------CCCCCCHHHHHHHHHHH
Confidence 34556777777777888889999988775543 332 221111 11 0 01111124455555566
Q ss_pred HHHHhhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
...+...++..|.++...--+| ...++.|++.+++.+.+|.++|..+
T Consensus 90 igaL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ag 145 (242)
T PF03746_consen 90 IGALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAG 145 (242)
T ss_dssp HHHHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETT
T ss_pred HHHHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 6677777778899988877666 3467889999999999999999554
No 60
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=80.08 E-value=4.2 Score=29.00 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~ 186 (217)
+....++.|++.++..||+-+.+ |.++..+.+. -+||++++-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s--------------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES--------------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS--------------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------chHHHHHHhhCCCCeEEEEcCc
Confidence 56678899999999999999887 7788888888 45999998553
No 61
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=79.99 E-value=24 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=29.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+.++++++.+...|..+|..+.+.....+-++.+||+-
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 34567889999999999998877664445688999994
No 62
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=79.87 E-value=27 Score=27.25 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
|+|++.|..+|..++.++.... +.++.++|+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd 32 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTAT 32 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeC
Confidence 6899999999988887776653 2378888884
No 63
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=79.43 E-value=29 Score=27.47 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=52.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
.+|.|-+.++-+..+|+--|+. ....+++|.+|-.......
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A~-------------------------------------- 41 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADAY-------------------------------------- 41 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCCH--------------------------------------
Confidence 3788999999888888877777 4445677777665321110
Q ss_pred HHHhhhhhhcCceEEEEEeec----CChHHHHHHHHHHcCCCEEEEec
Q 027929 106 KNIAEPLEEAGLQYKIHIVKD----HDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g----~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
..+..+..|+...+.-... ......|.+..++.++|+||+..
T Consensus 42 --~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 42 --ALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred --HHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 0111223566643332222 12456899999999999999975
No 64
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=77.63 E-value=26 Score=25.87 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=27.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+|++.|...|..++..+....... .++.++|+-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 58999999999999988877765432 478888883
No 65
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=77.06 E-value=27 Score=29.79 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+.++++++.+...|.-.+..+.+.....+.++-+||+-
T Consensus 36 ~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 36 ECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred hcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 356788999999999999998887765445678899983
No 66
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=76.31 E-value=19 Score=27.93 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=23.9
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHhCCCCCeEEEE
Q 027929 27 KIAIAVDLSD-ESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 27 ~IlVavD~s~-~s~~al~~A~~la~~~~~~l~lv 59 (217)
||++|+-+|- .....+++...+.++.|.+|.++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 6899999984 44557888888887777775543
No 67
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=75.62 E-value=33 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=27.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
+|+|++.|.-+|.-++.++.+ .|.+++++|+-.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~ 33 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNS 33 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 589999999999988887766 378899999953
No 68
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=75.22 E-value=38 Score=30.46 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=56.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||..|+. .+ +|+.|+|+++..... .........++.+.+..+.+.+
T Consensus 7 DLRl~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~---------------------~~~~~~~~~fl~~sL~~L~~~L 60 (475)
T TIGR02766 7 DLRVEDNPALAAAAR----AG-PVIPVFVWAPEEEGQ---------------------YYPGRVSRWWLKQSLAHLDQSL 60 (475)
T ss_pred CCCcchHHHHHHHHh----CC-CEEEEEEechHHhcc---------------------ccccHHHHHHHHHHHHHHHHHH
Confidence 444556777866653 23 799999987542110 0011223336666777777888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+..|+... ++.++++.+.|.+.+++.+++-|..-..
T Consensus 61 ~~~G~~L~--v~~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 61 RSLGTCLV--TIRSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHcCCceE--EEeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 87777654 3333378889999999999998876643
No 69
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=74.85 E-value=34 Score=25.80 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=25.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+|++.|..+|..++.++... +.++.++|+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5899999999999888776542 4578888884
No 70
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=74.33 E-value=33 Score=30.88 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=61.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....+|.+|+...... +++|+++++... ..+...-..++...+.++.+.+
T Consensus 11 DLR~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~-----------------------~~~~~~~~~Fl~~sL~~L~~~L 64 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPV---IIAVFILDPEQL-----------------------GHASPRHAAFLLQSLQALQQSL 64 (461)
T ss_pred ccccCChHHHHHHHhcCCCc---eEEEEEechhhc-----------------------cccCHHHHHHHHHHHHHHHHHH
Confidence 56667778888887766432 366777654321 1223445567777777888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
...|+. ..+..| ++.+.|.+++++.+++.|+-...
T Consensus 65 ~~~gi~--L~v~~~-~~~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 65 AELGIP--LLVREG-DPEQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHcCCc--eEEEeC-CHHHHHHHHHHHhCcceEEeeee
Confidence 877775 577788 68999999999998887776654
No 71
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=74.11 E-value=3.3 Score=29.06 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.|+++|+++++||+|+|.-.
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHH
T ss_pred HHHHHHHHHHcCCCEEEECChH
Confidence 7789999999999999999654
No 72
>PRK00919 GMP synthase subunit B; Validated
Probab=73.81 E-value=17 Score=30.83 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=28.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
.+++|++.|.-.|.-++.++.+. .+.+++.||+..
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~ 56 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDT 56 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEEC
Confidence 79999999999998888776552 467899999953
No 73
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=73.65 E-value=23 Score=28.83 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQ 192 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~ 192 (217)
.....|++.+.+.+.|.|.+|.+- +-..+. +-.+.++|-.....||++.|.....-..
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~---gvt~~~----~~~~v~~ik~~~~lPvilfP~~~~~is~ 85 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD---GVTEEN----VDNVVEAIKERTDLPVILFPGSPSGISP 85 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc---cccHHH----HHHHHHHHHhhcCCCEEEecCChhccCc
Confidence 456689999999999999999774 211111 2345556666889999999977665444
No 74
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=73.54 E-value=27 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=24.7
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
|+|++.|..+|.-++..+..+. .++.++|+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~ 31 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVD 31 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEc
Confidence 5899999999988888776653 278888884
No 75
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.02 E-value=56 Score=29.21 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
+.--.||++-|+--...+...|.++-+ .+..+.+|.+-. . +- .++ +
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~-~------------------------Rp---AA~-----e 145 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADT-Y------------------------RP---AAI-----E 145 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEeccc-C------------------------Ch---HHH-----H
Confidence 344567778888777777787777776 788888777611 0 00 111 1
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCCh---HHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDM---KERLCLEVERLGLSAMIMGGRGIGIGAVRRS 160 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~---~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~ 160 (217)
+++.+. ...++.+-.. ..+.++ +..-++++++..+|+||+-+.| |..+..-
T Consensus 146 QL~~La---~q~~v~~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAG--Rl~ide~ 199 (451)
T COG0541 146 QLKQLA---EQVGVPFFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAG--RLHIDEE 199 (451)
T ss_pred HHHHHH---HHcCCceecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC--cccccHH
Confidence 111222 2235555444 223344 4667888999999999999999 8777655
No 76
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=72.88 E-value=17 Score=35.04 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=37.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCc
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSV 66 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~ 66 (217)
...+|.+-.=+.+..+.|+.++.+++.+....+++++.++...
T Consensus 613 ~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 613 SSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred ceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 5567788888889999999999999999999999999987543
No 77
>PRK10867 signal recognition particle protein; Provisional
Probab=71.60 E-value=41 Score=30.06 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=24.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
-++++.-|+--+.-+...|..+..+.+..|.+|-.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 34445556667777888888887665778888776
No 78
>PRK11914 diacylglycerol kinase; Reviewed
Probab=71.37 E-value=20 Score=30.14 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=44.7
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
+.+...++.+.....+...-+..+++.+.+.++|+||+... -+.+... ...+. ....|+-++|...-+
T Consensus 33 ~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG---DGTi~ev--------v~~l~-~~~~~lgiiP~GT~N 100 (306)
T PRK11914 33 ARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG---DGVISNA--------LQVLA-GTDIPLGIIPAGTGN 100 (306)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC---chHHHHH--------hHHhc-cCCCcEEEEeCCCcc
Confidence 33445677766544443223666777676778898776644 3444433 33333 467899999987776
Q ss_pred CCCCC
Q 027929 190 RSQHD 194 (217)
Q Consensus 190 ~~~~~ 194 (217)
.-...
T Consensus 101 dfAr~ 105 (306)
T PRK11914 101 DHARE 105 (306)
T ss_pred hhHHH
Confidence 66554
No 79
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=71.13 E-value=26 Score=27.94 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=44.5
Q ss_pred cCceEEEEEeec-----------CChHHHHHHHHHHcCC-CEEEEecCCCCCCcccccCCccc-cchhHHHhcCCCccEE
Q 027929 115 AGLQYKIHIVKD-----------HDMKERLCLEVERLGL-SAMIMGGRGIGIGAVRRSSVGRL-GSVSDYCVHHCVCPVV 181 (217)
Q Consensus 115 ~~v~v~~~v~~g-----------~~~~~~I~~~a~~~~~-dlIVlG~~~~~~~~~~~~~~~~~-gS~s~~ll~~a~~PVl 181 (217)
.|..+++..+.. -=.++.|++..+..+. |+|++-..- ...-... |+ +-+.+.+.+...+||.
T Consensus 123 ~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~m--l~~~~~~---fLDD~t~~el~~~lg~~v~ 197 (204)
T PF04459_consen 123 PGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVM--LRHGEGV---FLDDMTLEELEERLGVPVI 197 (204)
T ss_pred CCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHH--hcCCCCc---cCCCCcHHHHHHHhCCcEE
Confidence 466666665443 1125567676665444 888888765 4443344 44 7788889999999999
Q ss_pred EEeCCC
Q 027929 182 VLRYPD 187 (217)
Q Consensus 182 vv~~~~ 187 (217)
+|+.++
T Consensus 198 vv~~~~ 203 (204)
T PF04459_consen 198 VVRGPG 203 (204)
T ss_pred EeCCCC
Confidence 998765
No 80
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.07 E-value=42 Score=28.26 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
....||.|.+.++..+.+++-++...- ..+++|.+|-...+ ...
T Consensus 91 ~~~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~visn~~-------------------------------~~~---- 134 (289)
T PRK13010 91 GQRPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGIISNHP-------------------------------DLQ---- 134 (289)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEEEECCh-------------------------------hHH----
Confidence 345699999999999999988875543 34566666544211 000
Q ss_pred HHHHHHhhhhhhcCceEEEEEee--c-CChHHHHHHHHHHcCCCEEEEecC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVK--D-HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~--g-~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.+++.|+.+...-.. . ......+++..+++++|+||+..-
T Consensus 135 -------~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 135 -------PLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred -------HHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 1122357766432111 1 123457889999999999999854
No 81
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=70.52 E-value=51 Score=25.99 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=24.3
Q ss_pred EEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 30 IAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 30 VavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
++.-.++.+..++..+..+++..+..|.++.+
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~ 60 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSM 60 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEE
Confidence 44456677888888999988777778777666
No 82
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=70.41 E-value=57 Score=27.28 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=52.1
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
..+.||.|.+.++..+.+++-.+..-- ..+++|.+|-...+ .....
T Consensus 82 ~~~~ki~vl~Sg~g~nl~~l~~~~~~g-~l~~~i~~visn~~-------------------------------~~~~~-- 127 (280)
T TIGR00655 82 DKLKRVAILVSKEDHCLGDLLWRWYSG-ELDAEIALVISNHE-------------------------------DLRSL-- 127 (280)
T ss_pred CCCcEEEEEEcCCChhHHHHHHHHHcC-CCCcEEEEEEEcCh-------------------------------hHHHH--
Confidence 356799999999999999888764432 34566666554221 00110
Q ss_pred HHHHHHhhhhhhcCceEEEEEee--c-CChHHHHHHHHHHcCCCEEEEecC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVK--D-HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~--g-~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.++.|+++...-.. . ......+++..++.++|+||+..-
T Consensus 128 ---------A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 128 ---------VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred ---------HHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCc
Confidence 12247765433221 1 112456888888999999999854
No 83
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=70.28 E-value=19 Score=31.73 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
..++|+|+|.++-.+.+++..+..+- +.|+.|.++=-
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L~-~~ga~v~vvmt 39 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLLR-RSGAEVRVVMT 39 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHHh-hCCCeeEEEcc
Confidence 34599999999999999988755554 66888766544
No 84
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=70.03 E-value=62 Score=26.81 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=27.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
..+++|++.|.-+|.-.+..|...+ |.++.+|.|.-
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~s 52 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDS 52 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEec
Confidence 3499999999988877766555544 68888888854
No 85
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=69.45 E-value=14 Score=31.96 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=50.1
Q ss_pred CceEEEEEeecC--------ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 116 GLQYKIHIVKDH--------DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 116 ~v~v~~~v~~g~--------~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+.++..-++.|+ .+.+.|+..++..++|++|.|-.- .-.--+. ..|.++..|-....+|++.-=..+
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaF--nagrYG~---acg~v~~aV~e~~~IP~vtaM~~E 121 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAF--NAGRYGV---ACGEVAKAVQEKLGIPVVTAMYEE 121 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCc--CCchHHH---HHHHHHHHHHHhhCCCEEEEeccc
Confidence 566666777663 356679999999999999999663 2222344 568899989999999998765544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
.
T Consensus 122 N 122 (349)
T PF07355_consen 122 N 122 (349)
T ss_pred C
Confidence 3
No 86
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=69.25 E-value=30 Score=29.22 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+++.+.+...+.....+......-+..+++.+...++|+||.+... + .++.++..+...-.-|+-++|-
T Consensus 23 ~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD---G--------Tv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 23 REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD---G--------TVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc---c--------hHHHHHHHHhcCCCCceEEecC
Confidence 3445556667898888888775347778888877899999998653 3 3455665565554444888887
Q ss_pred CCCCCC
Q 027929 186 PDDSRS 191 (217)
Q Consensus 186 ~~~~~~ 191 (217)
..-+.-
T Consensus 92 GT~Ndf 97 (301)
T COG1597 92 GTANDF 97 (301)
T ss_pred CchHHH
Confidence 655443
No 87
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=68.89 E-value=36 Score=23.60 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHhhhhhhcCceEEEEEee-----------cCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 105 AKNIAEPLEEAGLQYKIHIVK-----------DHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~-----------g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
++++...+...|+.+...+.. |..-.++|.+.+++.++|+||+-.. +.++...++-
T Consensus 10 l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~-------------Lsp~Q~rNLe 76 (95)
T PF13167_consen 10 LEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE-------------LSPSQQRNLE 76 (95)
T ss_pred HHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC-------------CCHHHHHHHH
Confidence 334444444556655443322 3335788999999999999999843 3345555565
Q ss_pred cCCCccEE
Q 027929 174 HHCVCPVV 181 (217)
Q Consensus 174 ~~a~~PVl 181 (217)
+...|+|+
T Consensus 77 ~~~~~~V~ 84 (95)
T PF13167_consen 77 KALGVKVI 84 (95)
T ss_pred HHHCCeee
Confidence 55666664
No 88
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=68.10 E-value=15 Score=24.02 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=28.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
.++|++++|......++.+...+...+.+..+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 58999999999999999888888877777666543
No 89
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.61 E-value=35 Score=27.92 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+......++++.|++|+.+.. ....+. .-++.++.....|++||-+...
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN---~a~PGP------~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPN---PAAPGP------KKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCC---CCCCCc------hHHHHHHHhcCCCEEEEcCCCc
Confidence 3345556678999999999775 333333 5688999999999999976544
No 90
>PRK13054 lipid kinase; Reviewed
Probab=67.22 E-value=37 Score=28.43 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=45.1
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYP 186 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~ 186 (217)
..+.+.++.++........-+..+++.+...++|.||+... -+.+. .+...++.. ..+|+-++|.+
T Consensus 25 ~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GG---DGTl~--------evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 25 GLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGG---DGTIN--------EVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECC---ccHHH--------HHHHHHHhhccCCCCcEEEEeCC
Confidence 34555677776655443223666777666667888876644 34443 344555543 35899999987
Q ss_pred CCCCCCCC
Q 027929 187 DDSRSQHD 194 (217)
Q Consensus 187 ~~~~~~~~ 194 (217)
.-+.-...
T Consensus 94 TgNdfar~ 101 (300)
T PRK13054 94 TANDFATA 101 (300)
T ss_pred cHhHHHHh
Confidence 77665544
No 91
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.11 E-value=94 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhH---------HHhcCCCccEEEEeC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSD---------YCVHHCVCPVVVLRY 185 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~---------~ll~~a~~PVlvv~~ 185 (217)
.-.+.|++.+++.++|++|+-+-+ .-+...+ ..--||+++ ++++...+++++|-.
T Consensus 155 t~~e~I~~~l~~~~p~lvVIDSIQ--T~~s~~~-~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 155 TNLEDIIAELEQEKPDLVVIDSIQ--TLYSEEI-TSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred cCHHHHHHHHHhcCCCEEEEeccc--eeecccc-cCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 348889999999999999999876 3333322 002366653 456667799998853
No 92
>PRK08185 hypothetical protein; Provisional
Probab=65.88 E-value=17 Score=30.53 Aligned_cols=69 Identities=12% Similarity=-0.054 Sum_probs=49.3
Q ss_pred cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+..+-.--........++++.|++.+..+|+..+.+ .....+. -+......+++.+++||.+-=+...
T Consensus 11 ~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~---~~~~~~~~~a~~~~vPV~lHLDHg~ 79 (283)
T PRK08185 11 HQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPN--ELDFLGD---NFFAYVRERAKRSPVPFVIHLDHGA 79 (283)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc--hhhhccH---HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4444444444444678999999999999999999887 4333333 3567778889999999887655554
No 93
>PRK05406 LamB/YcsF family protein; Provisional
Probab=65.45 E-value=48 Score=27.24 Aligned_cols=119 Identities=14% Similarity=0.026 Sum_probs=72.3
Q ss_pred EecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhh
Q 027929 31 AVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAE 110 (217)
Q Consensus 31 avD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (217)
+..+.-..-..++.++.+|++.+..|- -|. . ++.-+++... ....-.+.+.+...-+...+..
T Consensus 35 ACG~HAGDp~~M~~tv~lA~~~gV~IG-AHP--g---ypD~~gFGRR-----------~m~~s~~el~~~v~yQigAL~~ 97 (246)
T PRK05406 35 ACGFHAGDPAVMRRTVRLAKENGVAIG-AHP--G---YPDLEGFGRR-----------NMDLSPEELYALVLYQIGALQA 97 (246)
T ss_pred hccccCCCHHHHHHHHHHHHHcCCeEc-cCC--C---CCccCCCCCC-----------CCCCCHHHHHHHHHHHHHHHHH
Confidence 344445555677788888888776542 222 1 1111111110 1111124445555556666777
Q ss_pred hhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 111 PLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
.++..|.++...--+| ..+++.+++.++..+.+|++++..+ |...++.+....+++
T Consensus 98 ~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~---------------s~~~~~A~~~Gl~~~ 162 (246)
T PRK05406 98 IARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG---------------SELIRAAEEAGLRTA 162 (246)
T ss_pred HHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC---------------hHHHHHHHHcCCcEE
Confidence 7777899888776655 4568889999999999999999543 445566666666665
No 94
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=64.53 E-value=74 Score=25.66 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=52.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
++++.+.|...|.-|+-++.+. ...+.++.+++..... ....... ...++.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s-------------------~~~h~~~---~~~~~~q-- 53 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEES-------------------YMFHSPN---LHLTDLV-- 53 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCc-------------------cccccCC---HHHHHHH--
Confidence 6889999999999998887763 3445555554432100 0000000 1111112
Q ss_pred HHhhhhhhcCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
...-|++.......+ .+-.+.+.+.+++.+++.||.|.-
T Consensus 54 -----A~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI 94 (222)
T TIGR00289 54 -----AEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAI 94 (222)
T ss_pred -----HHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECcc
Confidence 223477765444444 345667778888889999999975
No 95
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=64.39 E-value=33 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=28.8
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++..|.++ ..+....+.+.+++.+.+.++|+|++....
T Consensus 22 ~l~~~G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 22 ALRDAGFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred HHHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 345567766 333334568899999999999999998774
No 96
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.67 E-value=56 Score=29.75 Aligned_cols=121 Identities=11% Similarity=0.057 Sum_probs=73.3
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
..+|--..|+|+|---|......|-||. +.+-.|.+.-+-+ . +...-+.+
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLl-qNkfrVLIAACDT-F----------------------------RsGAvEQL 425 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLL-QNKFRVLIAACDT-F----------------------------RSGAVEQL 425 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHH-hCCceEEEEeccc-h----------------------------hhhHHHHH
Confidence 4677778888899888888888888877 3455555554421 1 01111222
Q ss_pred HHHHHHHhh------hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC
Q 027929 102 ATNAKNIAE------PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH 175 (217)
Q Consensus 102 ~~~~~~~~~------~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~ 175 (217)
+.+.+++.+ ++-+.|..-. ...++...+++|+..+.|.|.|-+.| |...... ++++.+. +++-
T Consensus 426 rtHv~rl~~l~~~~v~lfekGYgkd-----~a~vak~AI~~a~~~gfDVvLiDTAG--R~~~~~~---lm~~l~k-~~~~ 494 (587)
T KOG0781|consen 426 RTHVERLSALHGTMVELFEKGYGKD-----AAGVAKEAIQEARNQGFDVVLIDTAG--RMHNNAP---LMTSLAK-LIKV 494 (587)
T ss_pred HHHHHHHHHhccchhHHHhhhcCCC-----hHHHHHHHHHHHHhcCCCEEEEeccc--cccCChh---HHHHHHH-HHhc
Confidence 233333321 1111122110 12367889999999999999999998 7777777 8888764 5554
Q ss_pred C-CccEEEE
Q 027929 176 C-VCPVVVL 183 (217)
Q Consensus 176 a-~~PVlvv 183 (217)
. |--|+.|
T Consensus 495 ~~pd~i~~v 503 (587)
T KOG0781|consen 495 NKPDLILFV 503 (587)
T ss_pred CCCceEEEe
Confidence 3 4444444
No 97
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.59 E-value=17 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
++++|++++-|+-.+.++++..-.|.+. |.+|.++
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g~~V~vi 36 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLV 36 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 5689999999999999999987777654 6665444
No 98
>PRK12569 hypothetical protein; Provisional
Probab=63.44 E-value=54 Score=26.94 Aligned_cols=105 Identities=14% Similarity=0.059 Sum_probs=63.5
Q ss_pred EEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHh
Q 027929 30 IAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIA 109 (217)
Q Consensus 30 VavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 109 (217)
|+..+.-..-..++.++++|++.+..|-. |. . ++.-.++... ....-.+.+.+....+...+.
T Consensus 37 IACG~HAGDp~~M~~tv~lA~~~~V~IGA-HP--s---yPD~~gFGRr-----------~m~~s~~el~~~v~yQigaL~ 99 (245)
T PRK12569 37 IATGFHAGDPNIMRRTVELAKAHGVGIGA-HP--G---FRDLVGFGRR-----------HINASPQELVNDVLYQLGALR 99 (245)
T ss_pred HhccccCCCHHHHHHHHHHHHHcCCEecc-CC--C---CCcCCCCCCC-----------CCCCCHHHHHHHHHHHHHHHH
Confidence 34445555566778888888887765432 22 1 1110111110 111112444455555666677
Q ss_pred hhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 110 EPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
..++..|.++...--+| ..+++.|++.+++.+.+|++++..+
T Consensus 100 ~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 100 EFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred HHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 77777899888776555 4568889999999999999998544
No 99
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=62.69 E-value=92 Score=26.11 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
.....||.|.+.++..+.+++-.+...- ..+.+|.+|-.... ...
T Consensus 86 ~~~~~ri~vl~Sg~gsnl~al~~~~~~~-~~~~~i~~visn~~-------------------------------~~~--- 130 (286)
T PRK06027 86 SAERKRVVILVSKEDHCLGDLLWRWRSG-ELPVEIAAVISNHD-------------------------------DLR--- 130 (286)
T ss_pred cccCcEEEEEEcCCCCCHHHHHHHHHcC-CCCcEEEEEEEcCh-------------------------------hHH---
Confidence 3455689999998888888877654432 34667766655221 001
Q ss_pred HHHHHHHhhhhhhcCceEEEEEee---cCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVK---DHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~---g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+ +++.|+.+...-.. ..+....+.+..+++++|+||+.+-.
T Consensus 131 -----~l---A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 131 -----SL---VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred -----HH---HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 11 22357776442211 11234568888999999999998643
No 100
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=62.38 E-value=24 Score=31.36 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=33.3
Q ss_pred eecCChHHHHHHHHHHcC---CCEEEEecCCCCCCcccccCCccccchhHH---HhcCCCccEEEE
Q 027929 124 VKDHDMKERLCLEVERLG---LSAMIMGGRGIGIGAVRRSSVGRLGSVSDY---CVHHCVCPVVVL 183 (217)
Q Consensus 124 ~~g~~~~~~I~~~a~~~~---~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~---ll~~a~~PVlvv 183 (217)
+.|......|++..+..+ +|+||+|+.| |.+.++ .. =+.+. .+-.+++||+.-
T Consensus 172 vQG~~A~~~i~~al~~~~~~~~Dviii~RGG---GS~eDL---~~-Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 172 VQGEGAAASIVAAIERANARGEDVLIVARGG---GSLEDL---WA-FNDEAVARAIAASRIPVISA 230 (438)
T ss_pred CcCccHHHHHHHHHHHhcCCCCCEEEEecCC---CCHHHh---hc-cCcHHHHHHHHcCCCCEEEe
Confidence 567666777777776544 5999999777 455554 22 12233 344578887764
No 101
>PRK00509 argininosuccinate synthase; Provisional
Probab=62.16 E-value=11 Score=33.36 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
++.+|+|++.|.-+|.-++.|+... .+.+|+.+|+.
T Consensus 1 ~~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d 36 (399)
T PRK00509 1 MKKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTAD 36 (399)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEe
Confidence 4569999999999999888887653 36789999985
No 102
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=62.03 E-value=62 Score=26.02 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.....+..++.+.|.||+++.. . ...+ -+-++.++..+..|++||.+..
T Consensus 49 eaav~~~~e~~~pDfvi~isPN--p-aaPG------P~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPN--P-AAPG------PKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCC--C-CCCC------chHHHHHHhhcCCCEEEecCCc
Confidence 3456678889999999999875 2 2222 3678899999999999997655
No 103
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=61.96 E-value=55 Score=26.56 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=24.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.+...+.+.++...+--| +-..-+..+.+.++|.+|+|+.
T Consensus 169 lr~~~~~~~~~~~IeVDGG--I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 169 VENRLGNRRVEKLISIDGS--MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHhcCCCceEEEECC--CCHHHHHHHHHCCCCEEEEChh
Confidence 3333344565544333333 4555555666789999999965
No 104
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=61.95 E-value=55 Score=26.42 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=22.6
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
...+.++...+--| +-..-+..+.+.++|.+|+|+.-
T Consensus 166 ~~~~~~~~IeVDGG--I~~eti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 166 DALGKPIRLEIDGG--VKADNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred HhcCCCeeEEEECC--CCHHHHHHHHHcCCCEEEEChhh
Confidence 33455544444333 55555556667799999999653
No 105
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=61.41 E-value=14 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=23.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVL 58 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~l 58 (217)
.++|++++|.....+.+..+....+...+.+|..
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 5899999999999999999999977666666543
No 106
>PRK13337 putative lipid kinase; Reviewed
Probab=60.47 E-value=64 Score=27.03 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=44.6
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
...+...+++++....+...-++.+++.+.+.++|+||+... -+.+. .+...++.. ...|+-++|.+.
T Consensus 25 ~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GG---DGTl~--------~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 25 LQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGG---DGTLN--------EVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcC---CCHHH--------HHHHHHhhCCCCCcEEEECCcC
Confidence 334455677776665554334666776666667888776644 34443 344444433 357899999877
Q ss_pred CCCCCCC
Q 027929 188 DSRSQHD 194 (217)
Q Consensus 188 ~~~~~~~ 194 (217)
-+.-...
T Consensus 94 ~NdfAr~ 100 (304)
T PRK13337 94 TNDFARA 100 (304)
T ss_pred HhHHHHH
Confidence 6655443
No 107
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=60.18 E-value=39 Score=27.28 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhhcCceEEEEEeec----CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCc
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKD----HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVC 178 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g----~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~ 178 (217)
...+.+++.++..|..|.+.-... .+..+.|..++++.+++-|++-..+ --. +-.....+.....|
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~--d~~--------l~~~l~~~~~~~~i 118 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPG--DYR--------LEQRLESLAQQLGI 118 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S---HH--------HHHHHHH----SSS
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCC--CHH--------HHHHHHhhhcccCC
Confidence 445567777788899998887763 2568899999999999999999777 322 23344567778899
Q ss_pred cEEEEeCCCC
Q 027929 179 PVVVLRYPDD 188 (217)
Q Consensus 179 PVlvv~~~~~ 188 (217)
++-+++.+.-
T Consensus 119 ~~~~~~~~~F 128 (224)
T PF04244_consen 119 PLEVLEDPHF 128 (224)
T ss_dssp -EEEE--TTS
T ss_pred ceEEeCCCCc
Confidence 9999987643
No 108
>PRK05370 argininosuccinate synthase; Validated
Probab=59.96 E-value=50 Score=29.60 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
..++|++|+.+.-.+.-++.|...- +.+|+.+++-
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aD 44 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTAN 44 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEE
Confidence 5679999999998888888886543 7889999984
No 109
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=59.73 E-value=13 Score=25.68 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=35.9
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+.+.+.|++++. ... + ...+-+.. .++|+|++|..- +..+ ...+..+....+||.+++...
T Consensus 25 ~~~~~~gi~~~v--~a~-~-~~~~~~~~--~~~Dvill~pqi--~~~~---------~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 25 KAAEEYGVPVKI--AAG-S-YGAAGEKL--DDADVVLLAPQV--AYML---------PDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHCCCcEEE--EEe-c-HHHHHhhc--CCCCEEEECchH--HHHH---------HHHHHHhhhcCCCEEEeChhh
Confidence 334456777543 333 2 22344444 368999999764 2222 223556777789999997643
No 110
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=59.65 E-value=53 Score=28.18 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=39.9
Q ss_pred HhhhhhhcCceEEEEEeecC---ChHHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKDH---DMKERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~---~~~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+.+.+...++.+.+.+..|. +....+++.+++.++|.|| +|..+ - ..++..+.....+|++.|
T Consensus 41 v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs--~-----------~D~aK~ia~~~~~p~i~V 107 (349)
T cd08550 41 FEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGK--T-----------LDTAKAVADRLDKPIVIV 107 (349)
T ss_pred HHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcH--H-----------HHHHHHHHHHcCCCEEEe
Confidence 34444445776655555443 2345678888889999887 66433 1 233444444457899999
Q ss_pred eCC
Q 027929 184 RYP 186 (217)
Q Consensus 184 ~~~ 186 (217)
|-.
T Consensus 108 PTt 110 (349)
T cd08550 108 PTI 110 (349)
T ss_pred CCc
Confidence 864
No 111
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=59.62 E-value=15 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCc--ccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGA--VRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~--~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
....|.+++++++++.||+|-.-...+. .... ..-..++.|.+..++||..+-...
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~---~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTE---RARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4788999999999999999954200111 1111 234566666666789998886543
No 112
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=58.79 E-value=27 Score=27.80 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
.++..+.+.+.|.|++|.+. +-... -+..+...+=++.++||++.|.....-.
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~---gvt~~----~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSL---GIVES----NLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcC---CCCHH----HHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 36666777889999999663 11111 2234445554458899999976655443
No 113
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=58.10 E-value=99 Score=24.98 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=52.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
++++.+.|..+|..|+-+|... ...+.|+++++...... ..+ ....+.++.+++
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~-------------------~~H---~~~~~~~~~qA~ 55 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESY-------------------MFH---GVNAHLTDLQAE 55 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcc-------------------ccc---ccCHHHHHHHHH
Confidence 5778999999999999887766 34567777776432100 000 001112222222
Q ss_pred HHhhhhhhcCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.-|++.......+ .+-.+.+.+..++.+++.||.|.-
T Consensus 56 -------algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 56 -------SIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred -------HcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 2366543222222 234566777777889999999975
No 114
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=57.95 E-value=36 Score=30.32 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=33.3
Q ss_pred EeecCChHHHHHHHHHH----cCCCEEEEecCCCCCCcccccCCccccchhHHH---hcCCCccEEEEe
Q 027929 123 IVKDHDMKERLCLEVER----LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC---VHHCVCPVVVLR 184 (217)
Q Consensus 123 v~~g~~~~~~I~~~a~~----~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l---l~~a~~PVlvv~ 184 (217)
.+.|......|+...+. .++|+||+|+.| +.+.++ .. =+.+.| +..+++||+.-=
T Consensus 165 ~vQG~~a~~~i~~al~~~~~~~~~dviii~RGG---Gs~eDL---~~-Fn~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 165 LVQGEGAVQSIVESIELANTKNECDVLIVGRGG---GSLEDL---WS-FNDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred cccCccHHHHHHHHHHHhhcCCCCCEEEEecCC---CCHHHh---hh-cCcHHHHHHHHcCCCCEEEec
Confidence 35676667777766653 337999999776 555554 22 122333 345778877653
No 115
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=57.68 E-value=17 Score=32.00 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+|++.|.-.|.-++.|+... +.+|+.+|+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id 32 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTAD 32 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEe
Confidence 5899999999999988887653 7789999995
No 116
>PRK14057 epimerase; Provisional
Probab=57.67 E-value=72 Score=26.34 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=24.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.....+..+...+--| +-..-+..+.+.++|.+|+|+.-
T Consensus 183 lr~~~~~~~~~~~IeVDGG--I~~~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 183 LLCLLGDKREGKIIVIDGS--LTQDQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHhcCCCceEEEECC--CCHHHHHHHHHCCCCEEEEChHh
Confidence 3333344555544444333 55555556667899999999653
No 117
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.61 E-value=38 Score=28.45 Aligned_cols=75 Identities=7% Similarity=0.113 Sum_probs=51.3
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
...+.+..+-.--..+.....++++.|++.+..+|+..+.+ .....+. +++......+++++++||.+-=+...+
T Consensus 12 ~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g~--~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 12 KAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPG--TFSYAGT--DYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred HHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc--HHhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 33444555444444555679999999999999999988776 3222221 145677888999999999887655543
No 118
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=57.60 E-value=1.3e+02 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=25.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
--++++.-|+--+.-+...|..+..+.+..+.++-.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 344555566667777888888876556778887766
No 119
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=57.45 E-value=40 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.0
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+..++.++.+....+.-....+.|.++.+++.+|+||+-.|.
T Consensus 122 ~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 122 KLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 334457888887777666778999999999999999998774
No 120
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=57.39 E-value=75 Score=25.66 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=21.9
Q ss_pred eEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 118 QYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 118 ~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++..++-- .+...-+..+.+-++|.+|+|+-
T Consensus 169 ~~~IeVDG--GI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 169 DILIEVDG--GINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CeEEEEeC--CcCHHHHHHHHHcCCCEEEEEEE
Confidence 44444433 46667777777889999999974
No 121
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=57.32 E-value=1.3e+02 Score=27.35 Aligned_cols=114 Identities=13% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
....+++-++.|.--...|.+|..+- -.+.++-| +.... + +.
T Consensus 358 ~dgdviltyg~s~vV~~ill~A~~~~----k~frVvVV-DSRP~-------------------------~-EG------- 399 (556)
T KOG1467|consen 358 QDGDVLLTYGSSSVVNMILLEAKELG----KKFRVVVV-DSRPN-------------------------L-EG------- 399 (556)
T ss_pred hcCCEEEEecchHHHHHHHHHHHHhC----cceEEEEE-eCCCC-------------------------c-ch-------
Confidence 44577888888877666666655444 44444444 22111 0 11
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhH-HHhcCCCccEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSD-YCVHHCVCPVVV 182 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~-~ll~~a~~PVlv 182 (217)
+.+++.+...|++|++..+.+ ..-|. ..++.|++|++. .-...-+ --..|...- -+.++..+||||
T Consensus 400 --~~~lr~Lv~~GinctYv~I~a---~syim-----~evtkvfLGaha--ilsNG~v-ysR~GTa~valvAna~nVPVlV 466 (556)
T KOG1467|consen 400 --RKLLRRLVDRGINCTYVLINA---ASYIM-----LEVTKVFLGAHA--ILSNGAV-YSRVGTACVALVANAFNVPVLV 466 (556)
T ss_pred --HHHHHHHHHcCCCeEEEEehh---HHHHH-----Hhcceeeechhh--hhcCcch-hhhcchHHHHHHhcccCCCEEE
Confidence 123334455799999999887 22333 357889999986 2211111 001243333 345567899999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
+....+
T Consensus 467 CCE~yK 472 (556)
T KOG1467|consen 467 CCEAYK 472 (556)
T ss_pred Eechhh
Confidence 987554
No 122
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=56.91 E-value=47 Score=27.45 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=42.6
Q ss_pred HHhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
-+++.|...|+.+......|+++.+ ..++.+.++ +|+||+... .++..+- -|.+.+++....|+.+
T Consensus 25 ~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGG---LGPT~DD------iT~e~vAka~g~~lv~ 92 (255)
T COG1058 25 FLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGG---LGPTHDD------LTAEAVAKALGRPLVL 92 (255)
T ss_pred HHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCC---cCCCccH------hHHHHHHHHhCCCccc
Confidence 3555666689999999999966432 344555555 999988633 4444432 3566666666666654
No 123
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.01 E-value=43 Score=28.14 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=50.2
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.++.+..+-.--..+.....++++.|++.+..+|+..+.+ .....+. ..+......+++++++||.+-=+...
T Consensus 13 A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~~g~--~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 13 AEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQG--AIKYAGI--EYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechh--HhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3334544444444455678999999999999999998776 3322221 14566778888999999988765554
No 124
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=55.53 E-value=52 Score=27.54 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=51.3
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
+...+.+..+-.--..+.....++++.|++.+..+|+..+.+ .....+. .+++......++.+++||.+-=+...
T Consensus 11 ~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~--~~~~~~~--~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 11 KKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEV--RLNHSPL--HLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhccCCh--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333444555544445555678999999999999999998876 3222221 14567778889999999887655544
No 125
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=55.44 E-value=76 Score=26.40 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=43.2
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+.+.+++++........-++.+.+.+...++|.||+... -+.+ ..+...++.+ ..+|+-++|-..
T Consensus 22 ~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GG---DGTi--------~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 22 DLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGG---DGTL--------REVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcC---ChHH--------HHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 3445677766554433223667777766667887765533 3444 3444555543 346899999876
Q ss_pred CCCCCCC
Q 027929 188 DSRSQHD 194 (217)
Q Consensus 188 ~~~~~~~ 194 (217)
-+.-...
T Consensus 91 gNdfAr~ 97 (293)
T TIGR03702 91 ANDFATA 97 (293)
T ss_pred hhHHHHh
Confidence 6655443
No 126
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=55.31 E-value=46 Score=28.02 Aligned_cols=73 Identities=5% Similarity=0.038 Sum_probs=49.6
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
..+.+..+-.--..+.....++++.|++.+..+|+..+.+ .-..... ..+......+++++++||.+-=+...
T Consensus 13 A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~~--~~~~~~~~~~a~~~~VPValHLDHg~ 85 (286)
T PRK12738 13 AQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPG--TFKHIAL--EEIYALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_pred HHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3334544444444444678999999999999999987765 2211111 14567788889999999998765554
No 127
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=55.18 E-value=45 Score=27.97 Aligned_cols=73 Identities=7% Similarity=0.082 Sum_probs=50.8
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
.+.+..+-.--........++++.|++.+.-+|+..+.+ .-...+. ..+......+++.+++||.+-=+...+
T Consensus 12 ~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~~--~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 12 QAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPG--TFKHAGT--EYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred HHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc--HHhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 334554444444454678999999999999999998876 3222221 145678888999999999887655543
No 128
>PRK00766 hypothetical protein; Provisional
Probab=55.07 E-value=37 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=44.1
Q ss_pred CceEEEEEeecCChHHHHHHHHHH----cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 116 GLQYKIHIVKDHDMKERLCLEVER----LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 116 ~v~v~~~v~~g~~~~~~I~~~a~~----~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
|+-.....+.|.|..+.|++.... .++.+|++..-. .+++.=. -...|-+.+..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git--~agFNvv-------D~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGIT--YGGFNVV-------DIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEe--eeeeEEe-------cHHHHHHHHCCCEEEE
Confidence 666677778899999999999886 356688887665 5544322 2356888899999999
No 129
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=54.85 E-value=41 Score=29.09 Aligned_cols=79 Identities=11% Similarity=-0.012 Sum_probs=50.4
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccC---Cc----------cccchhHHHhcC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSS---VG----------RLGSVSDYCVHH 175 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~---~~----------~~gS~s~~ll~~ 175 (217)
....++.+..+-.--........++++.|++.+..+|+..+.+ ........ .. .++.....++++
T Consensus 8 L~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 85 (345)
T cd00946 8 FDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNG--GAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEH 85 (345)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc--HHhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 3333444555544444555678999999999999999998876 32211110 00 234566778889
Q ss_pred CCccEEEEeCCCCC
Q 027929 176 CVCPVVVLRYPDDS 189 (217)
Q Consensus 176 a~~PVlvv~~~~~~ 189 (217)
+++||.+-=+...+
T Consensus 86 ~~VPValHLDHg~~ 99 (345)
T cd00946 86 YGVPVVLHTDHCAK 99 (345)
T ss_pred CCCCEEEECCCCCC
Confidence 99998877655544
No 130
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=54.64 E-value=17 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=36.2
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCC
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTS 65 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~ 65 (217)
....+|+|+-|....|....+.++.-+...|..|..+...+.+
T Consensus 38 ~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP 80 (137)
T PF02878_consen 38 GNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTP 80 (137)
T ss_dssp TTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HH
T ss_pred CCCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcH
Confidence 4568999999999999999999999998899999999866554
No 131
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=54.27 E-value=43 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=33.9
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
..++.++.+....+.-....+.|.++.+++..|+||+-.|.
T Consensus 124 ~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 124 VYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 34457888888877766788999999999999999998774
No 132
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.20 E-value=1.3e+02 Score=25.03 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhhh
Q 027929 34 LSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLE 113 (217)
Q Consensus 34 ~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (217)
.-.+...++++|..+.. .+.++...+.+.+.... ..|.+. ..+..+.+.+.++
T Consensus 36 sie~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~-~s~~G~-------------------------g~~gl~~l~~~~~ 88 (266)
T PRK13398 36 AVESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSP-YSFQGL-------------------------GEEGLKILKEVGD 88 (266)
T ss_pred cCCCHHHHHHHHHHHHH-cCCCEEEEeeecCCCCC-CccCCc-------------------------HHHHHHHHHHHHH
Confidence 33566777888887775 57788888887643221 111110 0122333444556
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.|+.+-+.+..-. -++++.+. +|++-+|++.
T Consensus 89 ~~Gl~~~te~~d~~-----~~~~l~~~-vd~~kIga~~ 120 (266)
T PRK13398 89 KYNLPVVTEVMDTR-----DVEEVADY-ADMLQIGSRN 120 (266)
T ss_pred HcCCCEEEeeCChh-----hHHHHHHh-CCEEEECccc
Confidence 67998887776653 23344455 7899999875
No 133
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=53.58 E-value=1.4e+02 Score=25.36 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=27.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+++|++.|.-+|.-++.++... .+.+++.||+-
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd 50 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVD 50 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEe
Confidence 78999999998888877666543 35789999994
No 134
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=53.54 E-value=75 Score=22.75 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=41.3
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCC-CEEEEecCCCCCCcccccCCccccchhHHHhcCC---CccEEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGL-SAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCPVVVL 183 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~-dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~PVlvv 183 (217)
+...+...+..++.......+..+.|....+..+. |.||+... -+.+ ..+...+++.. .+|+.++
T Consensus 20 v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GG---DGTl--------~~vv~~l~~~~~~~~~~l~ii 88 (130)
T PF00781_consen 20 VEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGG---DGTL--------NEVVNGLMGSDREDKPPLGII 88 (130)
T ss_dssp HHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEES---HHHH--------HHHHHHHCTSTSSS--EEEEE
T ss_pred HHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcC---ccHH--------HHHHHHHhhcCCCccceEEEe
Confidence 33344456777777777766778888876666665 77776644 2333 33444444443 3699999
Q ss_pred eCCCCC
Q 027929 184 RYPDDS 189 (217)
Q Consensus 184 ~~~~~~ 189 (217)
|-...+
T Consensus 89 P~GT~N 94 (130)
T PF00781_consen 89 PAGTGN 94 (130)
T ss_dssp E-SSS-
T ss_pred cCCChh
Confidence 965443
No 135
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=53.50 E-value=35 Score=30.34 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=48.9
Q ss_pred cCceEEEEEeecCC--------hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 115 AGLQYKIHIVKDHD--------MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 115 ~~v~v~~~v~~g~~--------~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+.++..-++.|++ +.+.|++.++..++|++|.|-.- .-.--+. ..|.++..|-.+..+|++.-=..
T Consensus 42 ~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaF--NagrYG~---acg~va~aV~e~~~IP~vtaMy~ 116 (431)
T TIGR01917 42 EDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAF--NAGRYGM---AAGAITKAVQDELGIKAFTAMYE 116 (431)
T ss_pred CCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCcc--CCccHHH---HHHHHHHHHHHhhCCCeEEEecc
Confidence 35666666776632 33569999999999999999653 2222234 46888888888899999877554
Q ss_pred C
Q 027929 187 D 187 (217)
Q Consensus 187 ~ 187 (217)
+
T Consensus 117 E 117 (431)
T TIGR01917 117 E 117 (431)
T ss_pred c
Confidence 4
No 136
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=53.50 E-value=27 Score=29.58 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=39.5
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHH-hcCCCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC-VHHCVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l-l~~a~~PVlvv~~~~ 187 (217)
+..+...|++++...-. .+....+..++|.+++|+.. -....++ ..-.|+-.-.+ .++..+||+|+-+..
T Consensus 171 a~~L~~~gI~vtlI~Ds------a~~~~m~~~~vd~VlvGAd~--v~~nG~v-~nk~GT~~lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 171 AWELMQDGIDVTLITDS------MAAYFMQKGEIDAVIVGADR--IARNGDV-ANKIGTYQLAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred HHHHHHCCCCEEEEChh------HHHHHccccCCCEEEEcccE--EecCCCE-eEhhhHHHHHHHHHHhCCCEEEecccc
Confidence 33444568776533222 23333334589999999876 3322222 00135544444 467889999996544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
+
T Consensus 242 K 242 (303)
T TIGR00524 242 T 242 (303)
T ss_pred c
Confidence 4
No 137
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=53.18 E-value=30 Score=29.07 Aligned_cols=73 Identities=11% Similarity=0.052 Sum_probs=49.8
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
..+.+..+-.--........++++.|++.+..+|+..+.+ .-...+. ..+......+++++.+||.+-=+...
T Consensus 13 A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g~--~~~~~~~~~~A~~~~vPV~lHLDH~~ 85 (283)
T PRK07998 13 IQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPT--NAQLSGY--DYIYEIVKRHADKMDVPVSLHLDHGK 85 (283)
T ss_pred HHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHh--HHhhCCH--HHHHHHHHHHHHHCCCCEEEECcCCC
Confidence 3344555444444454578899999999999999998776 3222221 14566778888999999987765543
No 138
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=52.35 E-value=1.3e+02 Score=24.47 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++.+.....+.++...+--| +-..-+..+.+.++|.+|+|+.
T Consensus 158 ~lr~~~~~~~~~~~IeVDGG--I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 158 ELKALRERNGLEYLIEVDGS--CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHhcCCCeEEEEECC--CCHHHHHHHHHcCCCEEEEChH
Confidence 33333344565554444444 4444555555679999999965
No 139
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=52.33 E-value=32 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=31.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
.++|++|+|+....+.|...+..++...+..+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5799999999999999999999999877877665543
No 140
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=52.13 E-value=42 Score=21.61 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=26.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVL 58 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~l 58 (217)
.++|+++.|.......+...+...+...+..+.+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4899999999999888887777777665555443
No 141
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=52.07 E-value=1.8e+02 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=21.3
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
.+|+.-|+--+.-+...|..+. ..|..|.++..
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcC
Confidence 3455566666667777777665 44677877765
No 142
>PRK06801 hypothetical protein; Provisional
Probab=51.72 E-value=63 Score=27.14 Aligned_cols=72 Identities=13% Similarity=-0.052 Sum_probs=51.0
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+.+..+-.--........++++.|++.+..+|+..+.+ .....+. ..+......+++++++||.+-=+...
T Consensus 14 ~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~--~~~~~~~--~~~~~~~~~~a~~~~vpV~lHlDH~~ 85 (286)
T PRK06801 14 RKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEV--HFKYISL--ESLVEAVKFEAARHDIPVVLNLDHGL 85 (286)
T ss_pred HHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcc--hhhcCCH--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 334554444444454678999999999999999999887 4333231 14677888999999999888765554
No 143
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.53 E-value=68 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCEEE-EecC
Q 027929 130 KERLCLEVERLGLSAMI-MGGR 150 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~ 150 (217)
.+.+++.+++.++|.|| +|..
T Consensus 72 v~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 72 VEAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred HHHHHHHHHhcCCCEEEEeCCc
Confidence 45677777788888887 6643
No 144
>PHA02031 putative DnaG-like primase
Probab=51.48 E-value=23 Score=29.35 Aligned_cols=37 Identities=8% Similarity=-0.121 Sum_probs=31.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
.++|++|+|+.....+|...|+.++...+..+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 4899999999999999999999998777777666555
No 145
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=51.48 E-value=1.3e+02 Score=24.80 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=40.5
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
+.+.+...++.+.........-...+++.+.+.++|+||+... -+.+ ..+...+..... .|+-++|.+
T Consensus 24 i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GG---DGTl--------~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 24 VIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGG---DGTI--------NEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred HHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECC---CChH--------HHHHHHHhcCCCCCcEEEEcCc
Confidence 3444555688776655554322345555555567888776533 3333 334455554333 467778876
Q ss_pred CCCCCC
Q 027929 187 DDSRSQ 192 (217)
Q Consensus 187 ~~~~~~ 192 (217)
.-+.-.
T Consensus 93 t~N~~a 98 (293)
T TIGR00147 93 TANDFA 98 (293)
T ss_pred CHHHHH
Confidence 554433
No 146
>TIGR00930 2a30 K-Cl cotransporter.
Probab=50.47 E-value=2.7e+02 Score=27.74 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
-.+||.+.........+++|-.+. +...-+++.||++.+.. .... ..+...
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~-----------------------~~~~-----~~~~~~ 626 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPRL-----------------------ECVK-----EAQAAE 626 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCchh-----------------------hhHH-----HHHHHH
Confidence 478888877777888899988888 44557777899764311 0000 001111
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH-----cCCCEEEEecCCCCCCccccc---CCccccchhHHHhcCCC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER-----LGLSAMIMGGRGIGIGAVRRS---SVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~-----~~~dlIVlG~~~~~~~~~~~~---~~~~~gS~s~~ll~~a~ 177 (217)
+++.+.++..+++.=..++.+.++.+++-...+. .+...|+||-.. ++...- ..++++ +.. -+....
T Consensus 627 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~---~w~~~~~~~~~~y~~-~i~-~a~~~~ 701 (953)
T TIGR00930 627 AKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK---DWRQAEPRAWETYIG-IIH-DAFDAH 701 (953)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc---chhhccchhHHHHHH-HHH-HHHHcC
Confidence 2233334445676666677777888888877775 568899999764 111100 000222 211 223567
Q ss_pred ccEEEEeCCC
Q 027929 178 CPVVVLRYPD 187 (217)
Q Consensus 178 ~PVlvv~~~~ 187 (217)
.-|+|+|..+
T Consensus 702 ~~v~i~r~~~ 711 (953)
T TIGR00930 702 LAVVVVRNSE 711 (953)
T ss_pred CcEEEEcccc
Confidence 8899988643
No 147
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=50.16 E-value=98 Score=26.26 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCCCCcccccCCccccch-hHHHhcCCCccEEEEeCCCC
Q 027929 141 GLSAMIMGGRGIGIGAVRRSSVGRLGSV-SDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 141 ~~dlIVlG~~~~~~~~~~~~~~~~~gS~-s~~ll~~a~~PVlvv~~~~~ 188 (217)
++|.+++|+.+ -.....+.+ -.|.. -.-+.++...|++++-...+
T Consensus 187 ~vd~VivGad~--I~~nG~lvn-kiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 187 RVDKVLVGADA--ILANGALVN-KIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred hCCEEEECccc--eecCCcEEe-ccchHHHHHHHHHhCCCEEEEeeeec
Confidence 58999999986 222211100 12433 23466779999999965443
No 148
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=50.15 E-value=96 Score=27.27 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCC
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTS 65 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~ 65 (217)
-+...++|+-+.|.=+|= -|.+++.+.|.+|..||....+
T Consensus 172 vGt~Gk~l~LlSGGIDSP----VA~~l~mkRG~~v~~v~f~~~p 211 (383)
T COG0301 172 VGTQGKVLLLLSGGIDSP----VAAWLMMKRGVEVIPVHFGNPP 211 (383)
T ss_pred cccCCcEEEEEeCCCChH----HHHHHHHhcCCEEEEEEEcCCC
Confidence 344457777776554442 3677888899999999996543
No 149
>PF13362 Toprim_3: Toprim domain
Probab=49.93 E-value=46 Score=22.50 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCcEEEEEecCChh--HHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 23 GAQRKIAIAVDLSDE--SAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 23 ~~~~~IlVavD~s~~--s~~al~~A~~la~~~~~~l~lvhV 61 (217)
...++|+|+.|.... ..++...+...+.+.+..+.++--
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 478899999998888 888888888777777777666544
No 150
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=49.88 E-value=1.3e+02 Score=23.82 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=25.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCC
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTS 65 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~ 65 (217)
...++|+.+.|.-+|-- |+++..+.|.+|..||+...+
T Consensus 2 t~gk~l~LlSGGiDSpV----Aa~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPV----AAWLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp TT-EEEEE-SSCCHHHH----HHHHHHCBT-EEEEEEEE-TT
T ss_pred CCceEEEEecCCccHHH----HHHHHHHCCCEEEEEEEECCC
Confidence 35688888887766643 566677789999999997543
No 151
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=49.31 E-value=55 Score=28.45 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=38.5
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRY 185 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~ 185 (217)
++...|++++...-. .+-.+..+..+|.||+|+.+ --...++ .--+|+-.-. ++++..+||.|+-+
T Consensus 214 eL~~~GI~vtlI~Ds------av~~~M~~~~Vd~VivGAd~--I~~nG~v-~NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 214 EYHYDGIPLKLISDN------MAGFVMQQGKVDAIIVGADR--IVANGDF-ANKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHCCCCEEEEehh------HHHHHhhhcCCCEEEECccE--EecCCCE-eehhhHHHHHHHHHHhCCCEEEEcc
Confidence 345578887643322 22234445689999999886 3332222 0013554433 44678899999864
No 152
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=49.15 E-value=43 Score=29.76 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=48.8
Q ss_pred cCceEEEEEeecCC--------hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 115 AGLQYKIHIVKDHD--------MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 115 ~~v~v~~~v~~g~~--------~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+.++..-++.|++ +.+.|++.++..++|++|.|-.- .-.--+. ..|.++..|-.+..+|++.-=..
T Consensus 42 ~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaF--NagrYG~---acg~va~aV~e~~~IP~vt~My~ 116 (431)
T TIGR01918 42 EDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAF--NAGRYGV---ACGEICKVVQDKLNVPAVTSMYV 116 (431)
T ss_pred cCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCcc--CCccHHH---HHHHHHHHHHHhhCCCeEEEecc
Confidence 35666666776632 33569999999999999999663 2222234 46888888888899999877554
Q ss_pred C
Q 027929 187 D 187 (217)
Q Consensus 187 ~ 187 (217)
+
T Consensus 117 E 117 (431)
T TIGR01918 117 E 117 (431)
T ss_pred c
Confidence 4
No 153
>PRK04527 argininosuccinate synthase; Provisional
Probab=49.10 E-value=40 Score=29.81 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=27.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.++|+|++.|.-.|.-++.|+.. .+.+|+.|++.
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d 35 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFAD 35 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEE
Confidence 46899999999998888888665 26789988885
No 154
>PRK13055 putative lipid kinase; Reviewed
Probab=49.10 E-value=1.4e+02 Score=25.49 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=44.5
Q ss_pred HhhhhhhcCceEEEEEeec-CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKD-HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g-~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~ 185 (217)
+.+.+...++.++...... ..-++.+++.+.+.++|+||+... -+.+.. +...++.. ...|+-++|.
T Consensus 25 i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GG---DGTl~e--------vvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 25 ILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGG---DGTINE--------VVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECC---CCHHHH--------HHHHHhhcCCCCcEEEECC
Confidence 3344555688777655542 123566777666678898887644 344433 34445443 3578999998
Q ss_pred CCCCCCCC
Q 027929 186 PDDSRSQH 193 (217)
Q Consensus 186 ~~~~~~~~ 193 (217)
+.-+.-..
T Consensus 94 GTgNdfAr 101 (334)
T PRK13055 94 GTTNDYAR 101 (334)
T ss_pred CchhHHHH
Confidence 76655443
No 155
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=49.02 E-value=49 Score=26.18 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=26.7
Q ss_pred CCcEEEEEecCChhHHH-HHHHHHHHhCCCCCeEEEE
Q 027929 24 AQRKIAIAVDLSDESAY-AVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~-al~~A~~la~~~~~~l~lv 59 (217)
..++|++++.|+-.+.+ +++.+-.+. +.|.+|+++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv 39 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPI 39 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEE
Confidence 56799999999999999 588766664 457675543
No 156
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=48.97 E-value=1.8e+02 Score=25.27 Aligned_cols=130 Identities=16% Similarity=0.249 Sum_probs=68.9
Q ss_pred CCCCcEEEEEecCC--hhHHHHHHHHHHHhCCC---CCeE-EEEEEE--eCCcccCcccccccCCCCCCCcCCCcccccc
Q 027929 22 NGAQRKIAIAVDLS--DESAYAVRWAVENYLRP---GDAV-VLLHVR--QTSVLYGADWGFINNTENRNDDEGGWGGIQL 93 (217)
Q Consensus 22 ~~~~~~IlVavD~s--~~s~~al~~A~~la~~~---~~~l-~lvhV~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (217)
.+...+++|-+... .+-..+++||.++.... .+.+ .++-++ .+... ..|-++-.+.... ..-.+
T Consensus 48 ~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs--~g~kGl~~DP~ld------gs~~i 119 (349)
T PRK09261 48 HGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTT--VGWKGLINDPDLD------GSFDI 119 (349)
T ss_pred cCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCC--CCCcCCCcCcCcc------ccccH
Confidence 45567777777644 45677888888776432 2232 243333 32222 2343322111111 01112
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 94 DSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
.+.+ +.++++.-...+.|+.+-+++..-.. . +|..++ +|++-+|++. .. .-.-..++
T Consensus 120 ~~GL-----~~~R~ll~~~~e~GlpvatE~ld~~~-~----~y~~dl-vs~~~IGARt--~e----------sq~hr~~a 176 (349)
T PRK09261 120 NDGL-----RIARKLLLDINELGLPAATEFLDPIT-P----QYIADL-ISWGAIGART--TE----------SQVHRELA 176 (349)
T ss_pred HHHH-----HHHHHHHHHHHHhCCCeEEEeccccc-H----HHHHhh-cceeeeccch--hc----------CHHHHHHh
Confidence 2222 12233332345579999999988743 3 555554 7889999886 21 12334566
Q ss_pred cCCCccEEE
Q 027929 174 HHCVCPVVV 182 (217)
Q Consensus 174 ~~a~~PVlv 182 (217)
...++||.+
T Consensus 177 sg~~~PVg~ 185 (349)
T PRK09261 177 SGLSCPVGF 185 (349)
T ss_pred cCCCCeeEe
Confidence 678888877
No 157
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=48.07 E-value=46 Score=28.80 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=39.7
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHH-hcCCCccEEEEeCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC-VHHCVCPVVVLRYPDD 188 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l-l~~a~~PVlvv~~~~~ 188 (217)
.++...|++++.. .. + .+-....+.++|.|++|+.+ -.....+ .--+|+-.-.+ +++..+||+|+-+..+
T Consensus 200 ~eL~~~GI~vtlI--~D-s---a~~~~M~~~~vd~VivGAd~--I~~nG~v-~NkiGT~~lAl~Ak~~~vPfyV~a~~~k 270 (344)
T PRK05720 200 WELYQAGIDVTVI--TD-N---MAAHLMQTGKIDAVIVGADR--IAANGDV-ANKIGTYQLAIAAKYHGVPFYVAAPSST 270 (344)
T ss_pred HHHHHCCCCEEEE--cc-c---HHHHHhcccCCCEEEEcccE--EecCCCE-eehhhHHHHHHHHHHhCCCEEEeccccc
Confidence 3445578876543 22 1 22333334689999999876 3322222 00135544444 4678899999866543
No 158
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=47.88 E-value=45 Score=28.21 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=38.0
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~ 187 (217)
+..+...|++++...-. .+.. + .. ++|.+++|+.+ --....+- --.|+-.-. ++++..+||+|+-+..
T Consensus 159 a~~L~~~gI~vtlI~Ds--a~~~-~---m~--~vd~VivGad~--v~~nG~v~-nkiGT~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 159 AKELRDYGIPVTLIVDS--AVRY-F---MK--EVDHVVVGADA--ITANGALI-NKIGTSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred HHHHHHCCCCEEEEehh--HHHH-H---HH--hCCEEEECccE--EecCCCEE-EHHhHHHHHHHHHHhCCCEEEEcccc
Confidence 34455578887654322 2222 2 22 49999999876 32222220 013544333 4466789999996544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
+
T Consensus 228 K 228 (301)
T TIGR00511 228 K 228 (301)
T ss_pred e
Confidence 4
No 159
>PLN02828 formyltetrahydrofolate deformylase
Probab=47.39 E-value=1.7e+02 Score=24.43 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=29.3
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
....||+|.+.++..+..+|-++.+-- ..+++|.+|-..
T Consensus 68 ~~~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViSn 106 (268)
T PLN02828 68 DPKYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVISN 106 (268)
T ss_pred CCCcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEeC
Confidence 456799999999999999988875544 456677666553
No 160
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=47.28 E-value=88 Score=27.15 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=52.3
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCcc------------ccchhHHHhc
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGR------------LGSVSDYCVH 174 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~------------~gS~s~~ll~ 174 (217)
+.+...+.+..+-.--+.......++++.|++.+..+|+..+.+ .... .+..... +......+++
T Consensus 12 ~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~ 89 (350)
T PRK09197 12 MFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNG--GAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAE 89 (350)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChh--hHhhcCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 33334445655555555555679999999999999999988776 3222 1100001 3456778889
Q ss_pred CCCccEEEEeCCCCC
Q 027929 175 HCVCPVVVLRYPDDS 189 (217)
Q Consensus 175 ~a~~PVlvv~~~~~~ 189 (217)
++++||.+-=+...+
T Consensus 90 ~~~VPValHLDHg~~ 104 (350)
T PRK09197 90 HYGVPVILHTDHCAK 104 (350)
T ss_pred HCCCCEEEECCCCCC
Confidence 999998887666555
No 161
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=47.20 E-value=61 Score=27.88 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=38.3
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh-cCCCccEEEEeC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV-HHCVCPVVVLRY 185 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll-~~a~~PVlvv~~ 185 (217)
.++...|++++... . + .+-.+....++|.+++|+.+ -.....+ .--+|+-.-.++ ++..+||+|+-+
T Consensus 190 ~eL~~~GI~vtlI~--D-s---a~~~~M~~~~Vd~VivGAd~--I~aNG~v-~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 190 WELAQEGIDHAIIA--D-N---AAGYFMRKKEIDLVIVGADR--IASNGDF-ANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHCCCCEEEEc--c-c---HHHHHhhhcCCCEEEECccE--EecCCCE-eehhhHHHHHHHHHHcCCCEEEecc
Confidence 34555788765432 2 1 22233345689999999876 3332222 001355444444 668899999854
No 162
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=46.69 E-value=36 Score=23.91 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=36.4
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+...|++++ +... + ...+-.+....++|+|++|..- +. .. .-...+.....+||.+++..
T Consensus 25 ~~e~gi~~~--i~a~-~-~~e~~~~~~~~~~DvIll~PQi--~~--------~~-~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 25 LKEQGKDIE--VDAI-T-ATEGEKAIAAAEYDLYLVSPQT--KM--------YF-KQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHCCCceE--EEEe-c-HHHHHHhhccCCCCEEEEChHH--HH--------HH-HHHHHHhhhcCCCEEEeCHH
Confidence 344677644 3333 2 3345555555689999999664 21 12 23356666778999999754
No 163
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=46.57 E-value=36 Score=29.64 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHcCCCEEEEec
Q 027929 129 MKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~ 149 (217)
....+++.|++.++|+||++.
T Consensus 28 ~f~~~l~~a~~~~vD~vliAG 48 (390)
T COG0420 28 AFDELLEIAKEEKVDFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHccCCEEEEcc
Confidence 355667777777777777764
No 164
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=46.32 E-value=63 Score=27.18 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=50.4
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhcCC--CccEEEEeCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVHHC--VCPVVVLRYPD 187 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~~a--~~PVlvv~~~~ 187 (217)
...+.+..+-.--........++++.|++.+..+|+..+.+ .... .+. ..+......+.+.+ ++||.+-=+..
T Consensus 12 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~~~g~--~~~~~~~~~~a~~~~~~VPV~lHLDHg 87 (288)
T TIGR00167 12 DAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNG--AAKYIAGL--GAISAMVKAMSEAYPYGVPVALHLDHG 87 (288)
T ss_pred HHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcc--hhhccCCH--HHHHHHHHHHHHhccCCCcEEEECCCC
Confidence 33344555444445555678999999999999999988776 3222 221 13566777888888 89998876555
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
.
T Consensus 88 ~ 88 (288)
T TIGR00167 88 A 88 (288)
T ss_pred C
Confidence 4
No 165
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.28 E-value=74 Score=26.60 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=50.0
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCC
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
+.+..+-.--........++++.|++.+..+|+--+.+ .-...+. ..+......+.+.+++||.+-=+..++
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~--~~~~~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 10 EGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEG--AIKYAGL--ELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34554444444454679999999999999999988776 3322221 145677788888999999887665543
No 166
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=46.11 E-value=1.6e+02 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=28.6
Q ss_pred EEEE-EecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAI-AVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlV-avD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
-|++ ..+..+++++.+++|..+|...+.+|+++|=.
T Consensus 166 gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~Ka 202 (393)
T PLN00096 166 NAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKK 202 (393)
T ss_pred eEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 4434 55777889999999999998888888888863
No 167
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=46.03 E-value=52 Score=27.19 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCC-CCCcccccCCccccchhHH-HhcCCCccEEEEeCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGI-GIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPD 187 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~-~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~ 187 (217)
+.+.+.|+++++.... .+..+.+. ++|.+++|+..- ..|.+-.. .|+-.-. ++++..+||+|+-...
T Consensus 152 ~~L~~~gi~v~~i~d~------~~~~~m~~-~vd~VliGad~v~~nG~v~nk----~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 152 KELAEAGIPVTLIPDS------AVGYVMPR-DVDKVLIGADAVLANGGVVNK----VGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp HHHHHTT-EEEEE-GG------GHHHHHHC-TESEEEEE-SEEETTS-EEEE----TTHHHHHHHHHHTT-EEEEE--GG
T ss_pred HHhhhcceeEEEEech------HHHHHHHH-hCCeeEEeeeEEecCCCEeeh----hhHHHHHHHHHhhCCCEEEEcccc
Confidence 3344468776544332 23344433 699999998750 02222211 3554333 4556889999996544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
+
T Consensus 221 K 221 (282)
T PF01008_consen 221 K 221 (282)
T ss_dssp G
T ss_pred c
Confidence 3
No 168
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=45.88 E-value=16 Score=30.75 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=48.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+...+.+..+-.--..+.....++++.|++.+..+|+.-+.+ .....+. ..++.....+.+++++||.+-=+
T Consensus 8 ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~--~~~~~~~--~~~~~~~~~~a~~~~vPValHLD 81 (287)
T PF01116_consen 8 LLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPS--EVKYMGL--EYLAAMVKAAAEEASVPVALHLD 81 (287)
T ss_dssp HHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHH--HHHHHHH--HHHHHHHHHHHHHSTSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchh--hhhhhhH--HHHHHHHHHHHHHcCCCEEeecc
Confidence 34444444555555555555679999999999999999998876 3323221 14567888999999999977543
No 169
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=45.86 E-value=56 Score=28.12 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=38.8
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh-cCCCccEEEEeCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV-HHCVCPVVVLRYPDD 188 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll-~~a~~PVlvv~~~~~ 188 (217)
.++...|++++.. .. + .+-......++|.+++|+.. -.....+ .--+|+-.-.++ ++..+||+|+-+..+
T Consensus 200 ~~L~~~GI~vtlI--~D-s---av~~~m~~~~vd~VivGAd~--v~~nG~v-~nkiGT~~lA~~Ak~~~vPfyV~a~~~k 270 (331)
T TIGR00512 200 WELVQEGIPATLI--TD-S---MAAHLMKHGEVDAVIVGADR--IAANGDT-ANKIGTYQLAVLAKHHGVPFYVAAPTST 270 (331)
T ss_pred HHHHHCCCCEEEE--cc-c---HHHHHhcccCCCEEEEcccE--EecCCCE-eehhhHHHHHHHHHHhCCCEEEeccccc
Confidence 3344568877533 32 1 12223335689999999876 3222222 001355444444 668899999865433
No 170
>PRK00861 putative lipid kinase; Reviewed
Probab=45.85 E-value=1e+02 Score=25.66 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=41.7
Q ss_pred CceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCC
Q 027929 116 GLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHD 194 (217)
Q Consensus 116 ~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~ 194 (217)
+++++........-+..+++.+...++|+||+... -+.+.. +...++ ...+|+-++|.+.-+.-...
T Consensus 32 ~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GG---DGTl~e--------vv~~l~-~~~~~lgviP~GTgNdfAr~ 98 (300)
T PRK00861 32 EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGG---DGTLSA--------VAGALI-GTDIPLGIIPRGTANAFAAA 98 (300)
T ss_pred cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECC---hHHHHH--------HHHHHh-cCCCcEEEEcCCchhHHHHH
Confidence 35555555554344677887777778898776533 344433 344444 34789999998776655443
No 171
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=45.82 E-value=1.4e+02 Score=26.27 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC--CCccE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH--CVCPV 180 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~--a~~PV 180 (217)
..++.+++.+.+.|+.++..-....+ .+.|.+.+. +++-||+|+.. ...-.-. .++..-..+... -..++
T Consensus 262 ~ma~aiaegl~~~gv~v~~~~~~~~~-~~eI~~~i~--~a~~~vvGsPT--~~~~~~p---~i~~~l~~v~~~~~~~k~~ 333 (388)
T COG0426 262 KMAQAIAEGLMKEGVDVEVINLEDAD-PSEIVEEIL--DAKGLVVGSPT--INGGAHP---PIQTALGYVLALAPKNKLA 333 (388)
T ss_pred HHHHHHHHHhhhcCCceEEEEcccCC-HHHHHHHHh--hcceEEEecCc--ccCCCCc---hHHHHHHHHHhccCcCceE
Confidence 44556777777889999998888854 677888884 68999999875 2211111 223333333332 34778
Q ss_pred EEEeCCCCCCCCC
Q 027929 181 VVLRYPDDSRSQH 193 (217)
Q Consensus 181 lvv~~~~~~~~~~ 193 (217)
.++-.-+++.++-
T Consensus 334 ~vfgS~GW~g~av 346 (388)
T COG0426 334 GVFGSYGWSGEAV 346 (388)
T ss_pred EEEeccCCCCcch
Confidence 8888777766543
No 172
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=45.72 E-value=37 Score=24.85 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCC---CCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIG---IGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~---~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
...+.|.+++++++++.||+|-.-.. .+.. .. ..-..++.|-+..++||..+-....
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~-a~---~v~~f~~~L~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPL-TE---RAQKFANRLEGRFGVPVVLWDERLS 94 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHH-HH---HHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 45788999999999999999943200 1111 11 2234556666666899998865443
No 173
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=45.28 E-value=82 Score=27.34 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCEEE-EecC
Q 027929 130 KERLCLEVERLGLSAMI-MGGR 150 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~ 150 (217)
.+.+++.+++.++|.|| +|..
T Consensus 74 v~~~~~~~~~~~~D~IIavGGG 95 (377)
T cd08176 74 VKDGLAVFKKEGCDFIISIGGG 95 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCc
Confidence 45677777788899888 6644
No 174
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=45.14 E-value=59 Score=27.70 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
.+....+++.+ ++|+||+|-.+= ...+--. -++.-+.+ -++.++||++.|.+--...+
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSl-yTSIiPn--Llv~gI~e-AI~~s~a~kV~v~N~~tq~g 218 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSL-YTSIIPN--LLVPEIAE-ALRESKAPKVYVCNLMTQPG 218 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcC-HHHhchh--cCchhHHH-HHHhCCCCEEEEeCCCCCCC
Confidence 34567777776 599999996541 2222222 03344554 55678999999988654443
No 175
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=44.83 E-value=1.2e+02 Score=27.58 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhhhcC-ceEEEEEeecCChHHHHHHHHHHc----CCCEEEEecCCCCCCcccccCCccccchhHHHhcCC
Q 027929 102 ATNAKNIAEPLEEAG-LQYKIHIVKDHDMKERLCLEVERL----GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC 176 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~-v~v~~~v~~g~~~~~~I~~~a~~~----~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a 176 (217)
.++.+++.+.+...+ +.++++...=-+-.+.|.+.+++. ++|.||+--+. .+. ++..-.+++..
T Consensus 22 ~~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~T--Fs~---------a~~~i~~~~~l 90 (484)
T cd03557 22 AAHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHT--FSP---------AKMWIAGLTAL 90 (484)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCC--Cch---------HHHHHHHHHHc
Confidence 344555666555433 333333222112255666777664 59999988664 221 34555678889
Q ss_pred CccEEEEeCCC
Q 027929 177 VCPVVVLRYPD 187 (217)
Q Consensus 177 ~~PVlvv~~~~ 187 (217)
.+|||+...+.
T Consensus 91 ~~PvL~~~~q~ 101 (484)
T cd03557 91 QKPLLHLHTQF 101 (484)
T ss_pred CCCEEEEccCC
Confidence 99999997663
No 176
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=44.73 E-value=1.1e+02 Score=26.32 Aligned_cols=66 Identities=23% Similarity=0.285 Sum_probs=38.1
Q ss_pred HhhhhhhcCceEEEEEeecCC---hHHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKDHD---MKERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~---~~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+.+.+...++.+.+..+.+.. ..+.+++.+++.++|.|| +|..+ ...++..+.-....|++.|
T Consensus 48 v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGs-------------v~D~aK~iA~~~~~p~i~I 114 (366)
T PRK09423 48 VEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGK-------------TLDTAKAVADYLGVPVVIV 114 (366)
T ss_pred HHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChH-------------HHHHHHHHHHHcCCCEEEe
Confidence 344444567766444444422 244677778888999887 44332 1233333333447899999
Q ss_pred eCC
Q 027929 184 RYP 186 (217)
Q Consensus 184 ~~~ 186 (217)
|-.
T Consensus 115 PTt 117 (366)
T PRK09423 115 PTI 117 (366)
T ss_pred CCc
Confidence 864
No 177
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=44.67 E-value=76 Score=26.65 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=48.2
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
+.+..+-.--..+.....++++.|++.+.-+|+..+.+ .-...+. +.+......+++.+++||.+-=+...
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~~g~--~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPG--TFSYAGT--EYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444433334444678999999999999999988776 3222121 13566788899999999987655554
No 178
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=44.57 E-value=1.3e+02 Score=22.57 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
....|.+.+++.++|+|++|...
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~ 93 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATS 93 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCc
Confidence 35678888888889999999776
No 179
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=44.35 E-value=2.2e+02 Score=24.87 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=80.0
Q ss_pred CCCcEEEEEecCChhHHHH--H-----HHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccch
Q 027929 23 GAQRKIAIAVDLSDESAYA--V-----RWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDS 95 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~a--l-----~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
....|.++...|...+..- + .+-.++++..+++|.+..---. ..+ +..-.. +
T Consensus 134 a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGV--g~S------------------~G~~s~-~ 192 (365)
T PF05677_consen 134 AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGV--GSS------------------TGPPSR-K 192 (365)
T ss_pred CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCcc--ccC------------------CCCCCH-H
Confidence 3556666666666655444 2 5778899889998877653110 000 000010 1
Q ss_pred HHHHHHHHHHHHHhhhhh--hcCceEEEEEeecCChHHHHHHHHHHc-------CCCEEEEecCCCCCCcccccCCcccc
Q 027929 96 TETDLTATNAKNIAEPLE--EAGLQYKIHIVKDHDMKERLCLEVERL-------GLSAMIMGGRGIGIGAVRRSSVGRLG 166 (217)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~v~v~~~v~~g~~~~~~I~~~a~~~-------~~dlIVlG~~~~~~~~~~~~~~~~~g 166 (217)
. +.+-.+...+.++ ..|+..+-.+..|.+.+..+..+|-+. ++..+++-.|+ .+.+...-..++|
T Consensus 193 d----Lv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRs--fssl~~vas~~~~ 266 (365)
T PF05677_consen 193 D----LVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRS--FSSLAAVASQFFG 266 (365)
T ss_pred H----HHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCC--cchHHHHHHHHHH
Confidence 1 1222233444444 257888899999988877775555332 46677887777 6666532111333
Q ss_pred ch-------------hHHHhcCCCccEEEEeCCCC
Q 027929 167 SV-------------SDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 167 S~-------------s~~ll~~a~~PVlvv~~~~~ 188 (217)
.. +.+.-+...||=+++...+.
T Consensus 267 ~~~~~l~~l~gWnidS~K~s~~l~cpeIii~~~d~ 301 (365)
T PF05677_consen 267 PIGKLLIKLLGWNIDSAKNSEKLQCPEIIIYGVDS 301 (365)
T ss_pred HHHHHHHHHhccCCCchhhhccCCCCeEEEecccc
Confidence 33 34455567899999976654
No 180
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=44.33 E-value=1.1e+02 Score=26.13 Aligned_cols=61 Identities=8% Similarity=0.101 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHD 194 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~ 194 (217)
.+....+++.+ ++|+||+|-.+= ...+--. -++.-+. ..++.++||++.|.+--...++.+
T Consensus 164 ~~~~~a~~AI~--~AD~Iv~gPGSl-yTSI~P~--Llv~gI~-eAi~~s~a~kV~v~N~~~~~get~ 224 (308)
T cd07187 164 KANPEALEAIE--EADLIVYGPGSL-YTSILPN--LLVKGIA-EAIRASKAPKVYICNLMTQPGETD 224 (308)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcc-HHHhhhh--cCchhHH-HHHHhCCCCEEEEecCCCCCCCCC
Confidence 45667888885 589999996541 2222222 0334455 456788999999988766665544
No 181
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.93 E-value=38 Score=23.61 Aligned_cols=59 Identities=7% Similarity=-0.070 Sum_probs=35.8
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+++.|++++.. .. . ...+-.+. .++|+|++|..- +.. + ...+..+.....||.+++.
T Consensus 22 ~~a~~~gi~~~i~--a~-~-~~e~~~~~--~~~Dvill~PQv--~~~--------~-~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 22 KGAKERGVPLEAA--AG-A-YGSHYDMI--PDYDLVILAPQM--ASY--------Y-DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHCCCcEEEE--Ee-e-HHHHHHhc--cCCCEEEEcChH--HHH--------H-HHHHHHhhhcCCCEEEeCH
Confidence 3344568876643 32 2 33455554 368999999775 222 2 2335677777899998874
No 182
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=43.40 E-value=2.3e+02 Score=24.90 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
-+...++++++.|.-+|--|+- ++.+.|.+|..||+..
T Consensus 177 vGs~gkvlvllSGGiDSpVAa~----ll~krG~~V~~v~f~~ 214 (381)
T PRK08384 177 IGTQGKVVALLSGGIDSPVAAF----LMMKRGVEVIPVHIYM 214 (381)
T ss_pred cCCCCcEEEEEeCChHHHHHHH----HHHHcCCeEEEEEEEe
Confidence 4566899999999988876543 3444599999999953
No 183
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=43.30 E-value=54 Score=28.26 Aligned_cols=74 Identities=8% Similarity=0.010 Sum_probs=48.0
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC-CCCCCccccc----C---------CccccchhHHHhcCCCc
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR-GIGIGAVRRS----S---------VGRLGSVSDYCVHHCVC 178 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~-~~~~~~~~~~----~---------~~~~gS~s~~ll~~a~~ 178 (217)
.+.+..+-.--..+.....++++.|++.+..+|+..+. + .....+. + ...+......+++++.+
T Consensus 9 ~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~V 86 (340)
T cd00453 9 KENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGG--ASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGV 86 (340)
T ss_pred HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch--HHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCC
Confidence 33455554455555567889999999999999998877 3 2111110 0 01345566778888999
Q ss_pred cEEEEeCCCC
Q 027929 179 PVVVLRYPDD 188 (217)
Q Consensus 179 PVlvv~~~~~ 188 (217)
||.+-=+...
T Consensus 87 PV~lHLDH~~ 96 (340)
T cd00453 87 PVILHTDHCA 96 (340)
T ss_pred CEEEEcCCCC
Confidence 9988765554
No 184
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=43.11 E-value=1.7e+02 Score=23.39 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhhhhcCceEEEEEeecCCh---------HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccch
Q 027929 98 TDLTATNAKNIAEPLEEAGLQYKIHIVKDHDM---------KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSV 168 (217)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~---------~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~ 168 (217)
.....+...++.+.++..++.+-.+..-.+.- ....++.+.+.++|+|=..+.+ . .-... ---..
T Consensus 107 ~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~--~-~~~t~---~~~~~ 180 (236)
T PF01791_consen 107 EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGK--P-VGATP---EDVEL 180 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SS--S-SCSHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCc--c-ccccH---HHHHH
Confidence 33444455567777777888766664332111 2567788889999999888764 2 11111 01133
Q ss_pred hHHHhcCCCcc----EEEEe
Q 027929 169 SDYCVHHCVCP----VVVLR 184 (217)
Q Consensus 169 s~~ll~~a~~P----Vlvv~ 184 (217)
..+++..++|| |++--
T Consensus 181 ~~~~~~~~~~p~~~~Vk~sG 200 (236)
T PF01791_consen 181 MRKAVEAAPVPGKVGVKASG 200 (236)
T ss_dssp HHHHHHTHSSTTTSEEEEES
T ss_pred HHHHHHhcCCCcceEEEEeC
Confidence 45677778899 77653
No 185
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=43.09 E-value=32 Score=25.39 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCCCCC
Q 027929 127 HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYPDDS 189 (217)
Q Consensus 127 ~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~~~~ 189 (217)
....+.|.+.+++++++.||+|-.-+..+..... ....-..++.|.... .+||..+-....+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~-~~~v~~f~~~L~~~~~~ipV~~~DEr~TT 99 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQ-ARRVRKFAEELKKRFPGIPVILVDERLTT 99 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CC-HHHHHHHHHHHHHHH-TSEEEEEECSCSH
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHH-HHHHHHHHHHHHHhcCCCcEEEECCChhH
Confidence 3578999999999999999999653101111110 002234556666676 8999999655443
No 186
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=43.07 E-value=87 Score=28.04 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=33.8
Q ss_pred eecCChHHHHHHHHHH---c-CCCEEEEecCCCCCCcccccCCccccchhHHH---hcCCCccEEEE
Q 027929 124 VKDHDMKERLCLEVER---L-GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC---VHHCVCPVVVL 183 (217)
Q Consensus 124 ~~g~~~~~~I~~~a~~---~-~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l---l~~a~~PVlvv 183 (217)
+.|......|++.++. . ++|+||+|+.| +.+.++ + .=+-+.| +-.+++||+--
T Consensus 172 VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG---GSiEDL---W-~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 172 VQGEGAAEEIVEAIERANQRGDVDVLIVARGG---GSIEDL---W-AFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred ccCCCcHHHHHHHHHHhhccCCCCEEEEecCc---chHHHH---h-ccChHHHHHHHHhCCCCeEee
Confidence 4576667777666553 3 39999999776 667665 3 2233334 44578888754
No 187
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=43.02 E-value=1.7e+02 Score=23.42 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
|+++-+.|..+|..|+.+|.+. ..-..|++.++...... ..+.+ .......+++
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~-------------------~~H~~---~~~~~~~qA~ 55 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSY-------------------MFHGV---NIELIEAQAE 55 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-S-------------------SS-ST---TGTCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcc-------------------ccccc---CHHHHHHHHH
Confidence 6788899999999998776554 22346667765432100 00000 0011111222
Q ss_pred HHhhhhhhcCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
. -|++....-..| .+-.+.+.+..++.+++.||.|.-
T Consensus 56 a-------lgipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI 94 (218)
T PF01902_consen 56 A-------LGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDI 94 (218)
T ss_dssp H-------HT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TT
T ss_pred H-------CCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcC
Confidence 1 366655444443 345667888888899999999964
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.83 E-value=1.1e+02 Score=21.18 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=27.3
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
..+++.|.++. +.......+.+.+.+++.++|+|.+...-
T Consensus 22 ~~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~ 61 (121)
T PF02310_consen 22 AYLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVSM 61 (121)
T ss_dssp HHHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccC
Confidence 33444577554 44443346889999999999999998743
No 189
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.82 E-value=1.7e+02 Score=23.68 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
++.+..+..|+..-..+-.+ .+.+.|..+.. .+|+|.+-+.. .+.-... |+.++.++|-
T Consensus 100 r~i~~Ik~~G~kaGv~lnP~-Tp~~~i~~~l~--~vD~VllMsVn--PGfgGQ~---Fi~~~l~Ki~ 158 (220)
T COG0036 100 RTIQLIKELGVKAGLVLNPA-TPLEALEPVLD--DVDLVLLMSVN--PGFGGQK---FIPEVLEKIR 158 (220)
T ss_pred HHHHHHHHcCCeEEEEECCC-CCHHHHHHHHh--hCCEEEEEeEC--CCCcccc---cCHHHHHHHH
Confidence 34455566788876666666 68888888886 58999998876 4444455 6666655543
No 190
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.60 E-value=1.9e+02 Score=23.73 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+....+.+.+.+.|..+-.....+..-.+..++...++++|=||+.+.. .. . ..-..+.+. .+||++
T Consensus 18 ~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~--~~-~---------~~l~~~~~~-~iPvV~ 84 (279)
T PF00532_consen 18 EIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSE--ND-D---------EELRRLIKS-GIPVVL 84 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSS--CT-C---------HHHHHHHHT-TSEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEeccc--CC-h---------HHHHHHHHc-CCCEEE
Confidence 3444455556667887654433332223367777888999999998554 21 1 233455555 899999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
+-..
T Consensus 85 ~~~~ 88 (279)
T PF00532_consen 85 IDRY 88 (279)
T ss_dssp ESS-
T ss_pred EEec
Confidence 8654
No 191
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.58 E-value=2.2e+02 Score=24.37 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=38.0
Q ss_pred HhhhhhhcCceEEEEEeecCCh---HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDM---KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~---~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+...++.+.+....+... .+.+++.+++.++|.||-=..| +. -.++..+.-....|++.||
T Consensus 41 v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG---S~---------iD~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 41 IEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG---KT---------LDTAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc---hh---------hHHHHHHHHHcCCCEEEeC
Confidence 3444455677765554545222 4467777788899976644333 11 1233333333468999998
Q ss_pred CC
Q 027929 185 YP 186 (217)
Q Consensus 185 ~~ 186 (217)
-.
T Consensus 109 TT 110 (351)
T cd08170 109 TI 110 (351)
T ss_pred Cc
Confidence 54
No 192
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=42.36 E-value=56 Score=27.83 Aligned_cols=57 Identities=5% Similarity=0.083 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
.+....+++.+ ++|+||+|-.+= ...+--. -++.-+. ..++.++||++.|.+--...
T Consensus 163 ~~~~~~l~AI~--~ADlIvlgPGSl-yTSI~P~--Llv~gi~-eAi~~s~a~kV~V~ni~t~p 219 (309)
T cd07044 163 SPSREVLEAIE--KADNIVIGPGSL-YTSILPN--ISVPGIR-EALKKTXAKKVYVSNIXTQP 219 (309)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcC-HHHhhhh--cCcHhHH-HHHHhcCCCeEEECCCCCCC
Confidence 45667888886 489999996651 2222222 0233344 46667899999998874333
No 193
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=42.09 E-value=2.7e+02 Score=25.28 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=45.5
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC------CCccEEEEe
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH------CVCPVVVLR 184 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~------a~~PVlvv~ 184 (217)
.+...++.++....+...-+..+++.+...++|.||+... -+.+. .+...++.. .++|+-+||
T Consensus 138 ~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGG---DGTln--------EVvNGL~~~~~~~~~~~~pLGiIP 206 (481)
T PLN02958 138 LLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSG---DGILV--------EVVNGLLEREDWKTAIKLPIGMVP 206 (481)
T ss_pred HHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcC---CCHHH--------HHHHHHhhCccccccccCceEEec
Confidence 3445688877666655344667777776677887776543 34443 344455533 368999999
Q ss_pred CCCCCCCCC
Q 027929 185 YPDDSRSQH 193 (217)
Q Consensus 185 ~~~~~~~~~ 193 (217)
.+..+.-..
T Consensus 207 aGTgNdfAr 215 (481)
T PLN02958 207 AGTGNGMAK 215 (481)
T ss_pred CcCcchhhh
Confidence 877665444
No 194
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=42.05 E-value=65 Score=26.95 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=38.0
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~ 187 (217)
+.++...|++++...-.. ++. + .+ ++|.+|+|+.. -.....+ .--+|+-.-. +.++..+||+|+-+..
T Consensus 153 a~eL~~~GI~vtlI~Dsa--~~~-~---m~--~vd~VivGAD~--I~~nG~v-~NKiGT~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 153 ANELEFLGIEFEVITDAQ--LGL-F---AK--EATLALVGADN--VTRDGYV-VNKAGTYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred HHHHHHCCCCEEEEeccH--HHH-H---HH--hCCEEEECccE--EecCCCE-eehhhHHHHHHHHHHcCCCEEEECccc
Confidence 444555688865433222 232 2 22 39999999875 3222221 0013554433 4467889999996544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
+
T Consensus 222 k 222 (275)
T PRK08335 222 K 222 (275)
T ss_pred e
Confidence 4
No 195
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=41.99 E-value=73 Score=26.87 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=47.1
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhcCC--CccEEEEeCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVHHC--VCPVVVLRYPD 187 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~~a--~~PVlvv~~~~ 187 (217)
..+.+..+-.--+.+.....++++.|++.+..+|+..+.+ .... .+. ..+......+++.+ .+||.+-=+..
T Consensus 13 A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~--~~~~~~~~--~~~~~~~~~~a~~~~~~vPV~lHLDH~ 87 (293)
T PRK07315 13 ARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMG--AAKYMGGY--KVCKNLIENLVESMGITVPVAIHLDHG 87 (293)
T ss_pred HHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 3334544444444455678999999999999999998776 3222 111 13456677788887 66887765444
No 196
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=41.79 E-value=2.1e+02 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=26.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+|+|++.|.-+|.-++..+.+. .+.+++.+|+.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd 33 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVD 33 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEec
Confidence 5899999999988887776553 35679999994
No 197
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=41.22 E-value=2.4e+02 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.9
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+..+|+|++.|.-+|.-++..+.+ .+.+|+.+|+.
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEe
Confidence 3456999999999988887766544 46789999885
No 198
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=41.08 E-value=2.2e+02 Score=23.92 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=50.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
...||+|.+.++..+..++-.+..-- ..+.+|.+|-...+. ..
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~visn~~~-------------------------------~~----- 130 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVSNHPD-------------------------------LE----- 130 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEECCcc-------------------------------HH-----
Confidence 34589999999888888877665544 345677666552110 00
Q ss_pred HHHHHhhhhhhcCceEEEEEee--c-CChHHHHHHHHHHcCCCEEEEecC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVK--D-HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~--g-~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+ .++.|+.+...-.. . .+....+.+..+++++|+||+.+-
T Consensus 131 ---~l---A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 131 ---PL---AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred ---HH---HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 11 22347765432111 1 112346788888999999999854
No 199
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=40.87 E-value=1.1e+02 Score=26.59 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=51.2
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCCCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDDS 189 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~~ 189 (217)
...+.+..+-.--........++++.|++.+..+|+..+.+ .....+. .++......+.++++ +||.+-=+...+
T Consensus 12 ~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~--~~~~~g~--~~~~~~v~~~ae~~~~VPVaLHLDHg~~ 87 (347)
T PRK13399 12 HAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRG--ARKYAGD--AMLRHMVLAAAEMYPDIPICLHQDHGNS 87 (347)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhhCCH--HHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 33344555444444454678999999999999999999876 3333221 145677788888885 999877655543
No 200
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.66 E-value=73 Score=27.63 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=48.8
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDD 188 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~ 188 (217)
.+.+..+-.--........++++.|++.+.-+|+..+.+ .....+. .++......+.++++ +||.+-=+...
T Consensus 14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~--~~~~~g~--~~~~~~~~~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAG--ARKYAGE--PFLRHLILAAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCcc--HhhhCCH--HHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 334554444444444679999999999999999998876 3322221 145667778888885 89887655554
No 201
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=40.65 E-value=1.1e+02 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.012 Sum_probs=39.0
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC---CccEEEEe
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCPVVVLR 184 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~PVlvv~ 184 (217)
++..|.++ ..+-..-+.+.|++.+++.++|+|.+.... ...... +....+.+-+.. .++|++--
T Consensus 106 l~~~G~~v--i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~--~~~~~~-----~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 106 LEANGFEV--IDLGRDVPPEEFVEAVKEHKPDILGLSALM--TTTMGG-----MKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHH-----HHHHHHHHHHCCCCcCCeEEEEC
Confidence 44467765 222223568999999999999999999764 333332 244555444443 35555543
No 202
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.18 E-value=47 Score=22.79 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=35.4
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+.+.+...|++++ +... +.. .+-... .++|+|+++..- +..+. ..+..+....+||.+++...
T Consensus 19 i~~~~~~~~~~~~--v~~~-~~~-~~~~~~--~~~Diil~~Pqv--~~~~~---------~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 19 MKKAAEKRGIDAE--IEAV-PES-ELEEYI--DDADVVLLGPQV--RYMLD---------EVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHCCCceE--EEEe-cHH-HHHHhc--CCCCEEEEChhH--HHHHH---------HHHHHhccCCCcEEEcChHh
Confidence 3344455677643 3333 222 333433 578999999664 22222 22344556789999998654
No 203
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=40.07 E-value=66 Score=27.30 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=38.0
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~ 187 (217)
+..+.+.|++++...-. .+.. + . .++|.+++|+.. -....++ ....|+-.-. ++++..+||+|+-+..
T Consensus 164 a~~L~~~GI~vtlI~Ds--av~~-~---m--~~vd~VivGAd~--v~~nG~v-~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 164 AKELAEYGIPVTLIVDS--AVRY-F---M--KDVDKVVVGADA--ITANGAV-INKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred HHHHHHCCCCEEEEehh--HHHH-H---H--HhCCEEEECccE--EecCCCE-EeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 33445578877644332 2332 2 2 239999999886 3222222 0013544333 4466789999996544
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
+
T Consensus 233 K 233 (310)
T PRK08535 233 K 233 (310)
T ss_pred e
Confidence 4
No 204
>PRK13057 putative lipid kinase; Reviewed
Probab=39.96 E-value=91 Score=25.82 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=44.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+.+.+...|+++.....+...-+..+++.+ ..++|+||+... -+.+ ..+...++ ...+|+-++|.+.
T Consensus 18 i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GG---DGTv--------~~v~~~l~-~~~~~lgiiP~GT 84 (287)
T PRK13057 18 ARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGG---DGTL--------NAAAPALV-ETGLPLGILPLGT 84 (287)
T ss_pred HHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECc---hHHH--------HHHHHHHh-cCCCcEEEECCCC
Confidence 334455568876666555323355566654 456888777644 3333 44555554 4578999999877
Q ss_pred CCCCCCC
Q 027929 188 DSRSQHD 194 (217)
Q Consensus 188 ~~~~~~~ 194 (217)
-+.-...
T Consensus 85 ~Ndfar~ 91 (287)
T PRK13057 85 ANDLART 91 (287)
T ss_pred ccHHHHH
Confidence 6655443
No 205
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.93 E-value=37 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.|.++++.+++|+|++|..+
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~ 73 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNS 73 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SS
T ss_pred HHHHHHHHHHcCCeEEEEcCCC
Confidence 4567788889999999997655
No 206
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=39.81 E-value=1.3e+02 Score=26.32 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCEEE-EecCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~ 151 (217)
.+.+++.+++.++|.|| +|..+
T Consensus 77 v~~~~~~~~~~~~D~IiaiGGGS 99 (383)
T PRK09860 77 VAAGLKLLKENNCDSVISLGGGS 99 (383)
T ss_pred HHHHHHHHHHcCCCEEEEeCCch
Confidence 55778888889999988 77543
No 207
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=39.63 E-value=1.1e+02 Score=22.94 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhhcCc---eEEEEEeec-CChHHHHHHHHHHcCCCEEE-Eec--CCCCCCcccccCCccccchhHHHhcC
Q 027929 103 TNAKNIAEPLEEAGL---QYKIHIVKD-HDMKERLCLEVERLGLSAMI-MGG--RGIGIGAVRRSSVGRLGSVSDYCVHH 175 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v---~v~~~v~~g-~~~~~~I~~~a~~~~~dlIV-lG~--~~~~~~~~~~~~~~~~gS~s~~ll~~ 175 (217)
..++...+.+...|+ +++...+.| -+..-.+-..++..++|.|| +|. +| ....... ...++++.+++-
T Consensus 20 ~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G--~T~H~~~---v~~~v~~gl~~l 94 (144)
T PF00885_consen 20 RLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRG--ETDHFEY---VANAVSRGLMDL 94 (144)
T ss_dssp HHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE----SSTHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCC--CchHHHH---HHHHHHHHHHHH
Confidence 334444555566777 788888888 33444566667666788765 452 55 4444455 556677666653
Q ss_pred ---CCccEE
Q 027929 176 ---CVCPVV 181 (217)
Q Consensus 176 ---a~~PVl 181 (217)
...||.
T Consensus 95 sl~~~~PV~ 103 (144)
T PF00885_consen 95 SLEYGIPVI 103 (144)
T ss_dssp HHHHTSEEE
T ss_pred hccCCccEE
Confidence 356664
No 208
>PRK06247 pyruvate kinase; Provisional
Probab=39.58 E-value=65 Score=29.21 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPDD 188 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~~ 188 (217)
++...++.|...++.+||+-+++ |+++..+.+. -+|||+.+-+..+
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s--------------G~ta~~isk~RP~~pI~a~t~~~~ 403 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS--------------GDTALRAARERPPLPILALTPNPE 403 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC--------------cHHHHHHHhhCCCCCEEEECCCHH
Confidence 56677788888999999998776 7788888887 4599999865443
No 209
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=39.36 E-value=1.6e+02 Score=25.64 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=50.8
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCc-------------cccchhHHHhc
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVG-------------RLGSVSDYCVH 174 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~-------------~~gS~s~~ll~ 174 (217)
.+...+.+..+-.--+.......++++.|++.+..+|+..+.+ .-.. .+.... .+......++.
T Consensus 19 L~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae 96 (357)
T TIGR01520 19 FQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNG--GAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAE 96 (357)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhhcCCcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 3333444554444444454678999999999999999998876 3211 110000 14556778888
Q ss_pred CCCccEEEEeCCCCC
Q 027929 175 HCVCPVVVLRYPDDS 189 (217)
Q Consensus 175 ~a~~PVlvv~~~~~~ 189 (217)
++++||.+-=+...+
T Consensus 97 ~a~VPValHLDHg~~ 111 (357)
T TIGR01520 97 HYGVPVVLHTDHCAK 111 (357)
T ss_pred HCCCCEEEECCCCCC
Confidence 999999887666654
No 210
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=39.18 E-value=1.2e+02 Score=26.37 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=50.3
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDDS 189 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~~ 189 (217)
..+.+..+-.--..+.....++++.|++.+..+|+..+.+ .....+. .++......++..++ +||.+-=+...+
T Consensus 11 A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~--~~~~~g~--~~~~~~~~~~ae~~~~VPValHLDHg~~ 85 (347)
T TIGR01521 11 AAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRG--ARSYAGA--PFLRHLILAAIEEYPHIPVVMHQDHGNS 85 (347)
T ss_pred HHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhhCCH--HHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 3334554444444454678999999999999999999887 3322221 145667788888886 999887665543
No 211
>PLN02461 Probable pyruvate kinase
Probab=39.15 E-value=66 Score=29.44 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEe
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLR 184 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~ 184 (217)
.++...++.|...++.+||+-+++ |.++..+.+.- +||++.+-
T Consensus 382 ~ia~sav~~A~~l~a~aIiv~T~s--------------G~tA~~iSk~RP~~pIia~t 425 (511)
T PLN02461 382 SLASSAVRTANKVKASLIVVLTRG--------------GTTARLVAKYRPAVPILSVV 425 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEe
Confidence 366777888889999999998876 78888888884 59999994
No 212
>PRK08576 hypothetical protein; Provisional
Probab=39.02 E-value=2.9e+02 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
+|+|++.|..+|..++..+.+... .+.++|+
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~i 266 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYV 266 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEe
Confidence 899999999999998877766542 3777776
No 213
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.56 E-value=73 Score=26.30 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=39.5
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh-cCCCccEEEEeCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV-HHCVCPVVVLRYP 186 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll-~~a~~PVlvv~~~ 186 (217)
+++.+...|++++ ++....+. .+. .++|.+++|+.. -.....+ ..-.|+-.-.++ ++..+||+|+-..
T Consensus 126 ~a~~L~~~GI~vt--li~Dsa~~----~~m--~~vd~VlvGAd~--V~~nG~v-~nkvGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 126 MAKLLVKSGIDVV--LLTDASMC----EAV--LNVDAVIVGSDS--VLYDGGL-IHKNGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred HHHHHHHCCCCEE--EEehhHHH----HHH--HhCCEEEECccE--EecCCCE-eehhhHHHHHHHHHHcCCCEEEEeec
Confidence 4444555788875 33331222 222 359999999886 3222222 001355444444 6688999998765
Q ss_pred CCC
Q 027929 187 DDS 189 (217)
Q Consensus 187 ~~~ 189 (217)
.+-
T Consensus 195 ~Kf 197 (253)
T PRK06372 195 MKI 197 (253)
T ss_pred ccc
Confidence 543
No 214
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=38.54 E-value=2.2e+02 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=35.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCc
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSV 66 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~ 66 (217)
..+|+|+-|....|....+..+.-....|..|+.+.+.++|.
T Consensus 37 ~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~ 78 (434)
T cd05802 37 RPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLLGVIPTPA 78 (434)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEEcccchHH
Confidence 367999999999998888888777778899999999887764
No 215
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=38.31 E-value=2.8e+02 Score=24.49 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=63.7
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+..++|+++..|.-...-++.|.... .+.+|+.+.+--... ..++........ ..........+..+++..
T Consensus 2 ~~~kkvvLAYSGGLDTSv~i~wL~e~---~~~eVia~tadvGQ~--eed~~~i~eKA~----~~Ga~~~~viD~reeF~~ 72 (403)
T COG0137 2 MKVKKVVLAYSGGLDTSVAIKWLKEK---GGAEVIAVTADVGQP--EEDLDAIREKAL----ELGAEEAYVIDAREEFVE 72 (403)
T ss_pred CCCcEEEEEecCCccHHHHHHHHHHh---cCceEEEEEEeCCCC--hHHhHHHHHHHH----HhCCceEEEeecHHHHHH
Confidence 45689999999998888888875543 457887777632110 000111000000 000011112222333332
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCCh-----HHHHHHHHHHcCCCEEEEecCCC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDM-----KERLCLEVERLGLSAMIMGGRGI 152 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~-----~~~I~~~a~~~~~dlIVlG~~~~ 152 (217)
.. .......+...+....-|... ++.+++.|++.+++.|.=|+.|+
T Consensus 73 ~y----i~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGK 123 (403)
T COG0137 73 DY----IFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGK 123 (403)
T ss_pred HH----HHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 22 222222355555555555332 67899999999999999999983
No 216
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=38.16 E-value=1.3e+02 Score=25.16 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=47.7
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhcCCC-ccEEEEeCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDD 188 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~ 188 (217)
.+.+..+-.--........++++.|++.+..+|+..+.+ .-.. .+. ..+......+.++++ +||.+--+...
T Consensus 12 ~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 12 KKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEG--AIKYMGGY--KMAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred HHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhccCcH--HHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 334544444444454679999999999999999988776 3221 111 134566777888888 89887765544
No 217
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.66 E-value=2.1e+02 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=23.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.+.....+..+...+.-| +-..=+..+.+.++|.+|+|+.
T Consensus 157 l~~~~~~~~~~~~I~vdGG--I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 157 VRKMIDESGRDIRLEIDGG--VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHhcCCCeeEEEECC--CCHHHHHHHHHcCCCEEEEeHH
Confidence 3333333455555555444 3444444555679999999965
No 218
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=70 Score=28.17 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=48.9
Q ss_pred eEEEEEeec-CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC---CccEEEEeCCCC
Q 027929 118 QYKIHIVKD-HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCPVVVLRYPDD 188 (217)
Q Consensus 118 ~v~~~v~~g-~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~PVlvv~~~~~ 188 (217)
.++.+++-. ....+++..++++.++..+|||..= .+.-+.. -.++.++++.+.++- ..|++++--.+.
T Consensus 247 ~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~i--eGEArev-g~v~asiarev~~~g~Pf~~P~~llsGGET 318 (422)
T COG2379 247 NVENRIIASNRLSLEAAASEARALGFKAVILGDTI--EGEAREV-GRVHASIAREVARRGRPFKKPVVLLSGGET 318 (422)
T ss_pred cceeEEEechHHHHHHHHHHHHhcCCeeEEeeccc--cccHHHH-HHHHHHHHHHHHHcCCCCCCCEEEEECCce
Confidence 344455443 4567889999999999999999975 4444432 116788999999986 689988866554
No 219
>PRK00074 guaA GMP synthase; Reviewed
Probab=37.60 E-value=3.2e+02 Score=24.95 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.++|+|++.|.-+|.-++..+.+.. +.++.++|+-
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd 249 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVD 249 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEe
Confidence 4799999999999988777665532 6779999994
No 220
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=37.56 E-value=1.5e+02 Score=27.43 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=34.3
Q ss_pred cCceEEEEEeecCChHHHHHHHH----HHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEV----ERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a----~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
++..++..++.+ ...+ -++.+ ...++|+||-. |+++..|-++.++||+-|+-..
T Consensus 36 ~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~~dviIsr-----------------G~ta~~i~~~~~iPVv~i~~s~ 93 (538)
T PRK15424 36 FDHLANITPIQL-GFEK-AVTYIRKRLATERCDAIIAA-----------------GSNGAYLKSRLSVPVILIKPSG 93 (538)
T ss_pred cCCCceEEehhh-hHHH-HHHHHHHHHhhCCCcEEEEC-----------------chHHHHHHhhCCCCEEEecCCH
Confidence 455556666665 2333 33333 34577877643 5788888888999999997544
No 221
>PRK12361 hypothetical protein; Provisional
Probab=37.08 E-value=1.4e+02 Score=27.40 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=40.0
Q ss_pred ceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCC
Q 027929 117 LQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHD 194 (217)
Q Consensus 117 v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~ 194 (217)
++++........-+..+++.+.+.++|+||+... -+.+. .+...+. ...+|+-++|-+..+.-.+.
T Consensus 273 ~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GG---DGTl~--------ev~~~l~-~~~~~lgiiP~GTgNdfAr~ 338 (547)
T PRK12361 273 FDLTVKLTTPEISAEALAKQARKAGADIVIACGG---DGTVT--------EVASELV-NTDITLGIIPLGTANALSHA 338 (547)
T ss_pred CceEEEECCCCccHHHHHHHHHhcCCCEEEEECC---CcHHH--------HHHHHHh-cCCCCEEEecCCchhHHHHH
Confidence 4554444443233677877776677888776533 34443 3444444 35789999998877754443
No 222
>PTZ00300 pyruvate kinase; Provisional
Probab=37.04 E-value=76 Score=28.61 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYP 186 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~ 186 (217)
.++...++.+...++.+||+-+++ |.++..+.+. -+||++.+-+.
T Consensus 335 ~ia~sa~~~a~~l~a~aIiv~T~s--------------G~tA~~vs~~RP~~pIia~t~~ 380 (454)
T PTZ00300 335 AVCSSAVNSVYETKAKALVVLSNT--------------GRSARLVAKYRPNCPIVCVTTR 380 (454)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEECCC
Confidence 356678888889999999998776 6788888887 45898888543
No 223
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=37.03 E-value=59 Score=28.06 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.7
Q ss_pred CCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCC
Q 027929 142 LSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193 (217)
Q Consensus 142 ~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~ 193 (217)
.|+||+|+. +.|++..+++.....-||||-....-.+..
T Consensus 2 fd~lIVGaG-------------lsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAG-------------LSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCc-------------hhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 588999943 678888889999899999997766655544
No 224
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.66 E-value=1.4e+02 Score=21.85 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.6
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++..|.++- -+--..+.+.+++.|.++++|+|.+.+-.
T Consensus 23 L~~~GfeVi--dLG~~v~~e~~v~aa~~~~adiVglS~L~ 60 (128)
T cd02072 23 FTEAGFNVV--NLGVLSPQEEFIDAAIETDADAILVSSLY 60 (128)
T ss_pred HHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 344566542 22223568999999999999999997654
No 225
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=36.00 E-value=1.3e+02 Score=19.89 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=28.5
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCE-EEEec
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSA-MIMGG 149 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dl-IVlG~ 149 (217)
..+.++.+.++..|+.+.... .+..+.+.+-.+-. .++-+ ||+|.
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~-~~~~~~k~~~~a~~-~g~p~~iiiG~ 61 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDD-SDKSLGKQIKYADK-LGIPFIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEES-SSSTHHHHHHHHHH-TTESEEEEEEH
T ss_pred HHHHHHHHHHHHCCCEEEEEC-CCCchhHHHHHHhh-cCCeEEEEECc
Confidence 455567777777898887777 44466665555554 45554 55663
No 226
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.72 E-value=65 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+++.+++.++.+|.+-+.+
T Consensus 105 i~~v~~~~~~~~~~vi~v~t~g 126 (427)
T cd01971 105 VGAVVSEFQEGGAPIVYLETGG 126 (427)
T ss_pred HHHHHHHhhhcCCCEEEEECCC
Confidence 3444444455566666666555
No 227
>PRK10481 hypothetical protein; Provisional
Probab=35.52 E-value=2e+02 Score=23.29 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=35.2
Q ss_pred cCceEEEEEeec-CChHHHHHHHHH---HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 115 AGLQYKIHIVKD-HDMKERLCLEVE---RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 115 ~~v~v~~~v~~g-~~~~~~I~~~a~---~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
.|..+....... ....+.+.+.++ ..++|+||++..+ .+. .....+-+...+||+..
T Consensus 152 ~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G--~~~----------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 152 LQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLG--YHQ----------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred cCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCC--cCH----------HHHHHHHHHHCcCEEcH
Confidence 466655444221 123456666666 5689999999888 432 23455666678888753
No 228
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=35.51 E-value=1.4e+02 Score=25.35 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=49.2
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDDS 189 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~~ 189 (217)
.+.+..+-.--+.......++++.|++.+..+|+..+.+ .....+. .++......++++++ +||.+-=+...+
T Consensus 13 ~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~--~~~~~g~--~~~~~~~~~~a~~~~~VPValHLDHg~~ 86 (307)
T PRK05835 13 HKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEG--AIKYMGI--DMAVGMVKIMCERYPHIPVALHLDHGTT 86 (307)
T ss_pred HHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhCCh--HHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 334554444444555678999999999999999998776 3222111 144567777888886 999887655543
No 229
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=35.48 E-value=85 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=26.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
+++|+|++.|......+++. ++..+..+.+++++=.
T Consensus 2 ~~riivgisGASG~iygvrl-Le~L~~~~~e~hlviS 37 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRL-LEVLRELGVETHLVIS 37 (191)
T ss_pred CcEEEEEEeccccHHHHHHH-HHHHHhcCceEEEEEc
Confidence 57899999999999988885 4555455666666543
No 230
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=35.43 E-value=77 Score=28.69 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
.++...++.+...++++||+-+++ |+++..+.+. -+|||+++-+..
T Consensus 360 ~ia~~a~~~a~~~~akaIVv~T~S--------------G~TA~~vSr~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 360 AIALSAVEAAEKLDAKAIVVLTES--------------GRTARLLSKYRPNAPIIAVTPNE 406 (473)
T ss_pred HHHHHHHHHHhhcCCCEEEEEcCC--------------hHHHHHHHhhCCCCCEEEEcCCH
Confidence 456677788888999999999876 7788888887 459999986543
No 231
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=35.41 E-value=54 Score=29.37 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+.++|.+..+++++++|++-+.- -..+-+- -+.++++.+-....+||+.|.-++
T Consensus 109 L~~~I~e~~~~~~P~~I~V~ttC--~~~lIGd---Di~~v~~e~~~~~~~~vi~v~t~g 162 (456)
T TIGR01283 109 LFHAIREIVERYHPPAVFVYSTC--VPGLIGD---DLEAVCKAAAEKTGIPVIPVDSEG 162 (456)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC--hHHHhcC---CHHHHHHHHHHHhCCCEEEEECCC
Confidence 44555555555566666665554 2222222 222233333223456666665444
No 232
>PLN02765 pyruvate kinase
Probab=35.39 E-value=79 Score=29.04 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEe
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLR 184 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~ 184 (217)
..+...++.|...++.+||+-+++ |.++..+.+.- .|||+.+-
T Consensus 395 aia~sav~~A~~l~a~aIvv~T~s--------------G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 395 SIASSAVRAAIKVKASVIIVFTSS--------------GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEe
Confidence 366777888889999999998776 78888888884 59999985
No 233
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=35.16 E-value=68 Score=24.91 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
||++++.|+-.+.++.+.+..+.+ .+.+|.++
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv 32 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLV 32 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 589999999999999998777764 46664443
No 234
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.11 E-value=1.1e+02 Score=21.25 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=39.5
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC--ccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV--CPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~--~PVlvv~~ 185 (217)
+++.|..+...-. ....+.+++.+.+.++|+|.+.... .... . .-.....+.+..+ +++++=-.
T Consensus 23 l~~~G~~v~~l~~--~~~~~~~~~~i~~~~pdiV~iS~~~--~~~~-~-----~~~~~~~~~~~~p~~~~ivvGG~ 88 (125)
T cd02065 23 LRDNGFEVIDLGV--DVPPEEIVEAAKEEDADVVGLSALS--TTHM-E-----AMKLVIEALKELGIDIPVVVGGA 88 (125)
T ss_pred HHHCCCEEEEcCC--CCCHHHHHHHHHHcCCCEEEEecch--HhHH-H-----HHHHHHHHHHhcCCCCeEEEeCC
Confidence 4556776544422 3467889999999999999998765 3322 1 1234455666654 66665543
No 235
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=34.91 E-value=69 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=10.2
Q ss_pred CCCCCcEEEEEecCChhHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAY 40 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~ 40 (217)
.....+..++-+.++..|..
T Consensus 18 ~~~~i~~~~~l~Hgp~GC~~ 37 (406)
T cd01967 18 VLGPIKDAVHIVHGPIGCAY 37 (406)
T ss_pred eeeecccEEEEeeCChhccC
Confidence 34445555555555555443
No 236
>PLN02762 pyruvate kinase complex alpha subunit
Probab=34.83 E-value=83 Score=28.79 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYPD 187 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~~ 187 (217)
.++...++.|...++.+||+-+++ |.++..+.+.- +|||+.+-+..
T Consensus 396 aia~sa~~~A~~l~a~aIv~~T~s--------------G~tA~~iSk~RP~~pIia~t~~~ 442 (509)
T PLN02762 396 EICNSAAKMANNLGVDAIFVYTKH--------------GHMASLLSRNRPDCPIFAFTDTT 442 (509)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEECCCH
Confidence 356677888889999999998776 77888888874 58988885443
No 237
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.79 E-value=3e+02 Score=23.76 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=73.5
Q ss_pred cEEEEEec--C---Ch---hHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHH
Q 027929 26 RKIAIAVD--L---SD---ESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTE 97 (217)
Q Consensus 26 ~~IlVavD--~---s~---~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (217)
.-+++.++ + +. .....+.|-..-+.+.|+.-+-++++-.+.. ...+
T Consensus 84 ~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~--------------------------~~~~ 137 (340)
T PRK12858 84 CGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDE--------------------------DDAI 137 (340)
T ss_pred CCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCc--------------------------chHH
Confidence 44778876 2 21 2344566667777888888877887633210 0122
Q ss_pred HHHHHHHHHHHhhhhhhcCceEEEEEee---cC----------ChHHHHHHHHH-----HcCCCEEEEecCCCCCC-ccc
Q 027929 98 TDLTATNAKNIAEPLEEAGLQYKIHIVK---DH----------DMKERLCLEVE-----RLGLSAMIMGGRGIGIG-AVR 158 (217)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~v~v~~~v~~---g~----------~~~~~I~~~a~-----~~~~dlIVlG~~~~~~~-~~~ 158 (217)
+....+..+++.++|.+.|+.+-..++. |. .-.+.|...++ ++++|++=+-..+ .. .+.
T Consensus 138 ~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~--~~~~ve 215 (340)
T PRK12858 138 NDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPV--DMKFVE 215 (340)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCC--Cccccc
Confidence 3334455667888888899987665321 11 01223333333 4889998887654 21 122
Q ss_pred ccCC-c-ccc-----chhHHHhcCCCccEEEEeCC
Q 027929 159 RSSV-G-RLG-----SVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 159 ~~~~-~-~~g-----S~s~~ll~~a~~PVlvv~~~ 186 (217)
+... + ... ..-..+...+++|+++.-.+
T Consensus 216 g~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG 250 (340)
T PRK12858 216 GFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAG 250 (340)
T ss_pred ccccccccccHHHHHHHHHHHHhhCCCCEEEECCC
Confidence 1100 0 000 23456677799999998654
No 238
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=34.78 E-value=68 Score=20.31 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=21.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCC
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLR 51 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~ 51 (217)
.+|+++.|.+...+.+..++.+.+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 67999999999998888877776644
No 239
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.58 E-value=1.1e+02 Score=24.79 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
...+++.+.+.+.|.|++|.+. --.... +..+.. .++....||++.|.....-
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~--~vt~~~-----~~~~v~-~ik~~~lPvilfp~~~~~i 68 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQ--GVTYEK-----TDTLIE-ALRRYGLPIILFPSNPTNV 68 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCC--cccHHH-----HHHHHH-HHhccCCCEEEeCCCcccc
Confidence 3346677777899999999775 111122 223333 3445559999998554433
No 240
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=34.53 E-value=94 Score=25.58 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+...+..++++.|++|+.+.. ....+. .-++.++.....|++||-+..
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN---~~~PGP------~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPN---AAAPGP------TKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S----TTSHHH------HHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhhCCCEEEEECCC---CCCCCc------HHHHHHHHhCCCCEEEEcCCC
Confidence 344555678999999999775 233332 467889999999999997643
No 241
>PRK13059 putative lipid kinase; Reviewed
Probab=34.32 E-value=2e+02 Score=23.92 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=40.5
Q ss_pred HhhhhhhcCceEEEEEee-cCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVK-DHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~-g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~ 185 (217)
+...+...|.++...... +.+ .+... .+.+.++|.||+... -+.+ ..+...++.. .++|+-|+|.
T Consensus 24 i~~~l~~~g~~~~~~~~~~~~~-~~~~~-~~~~~~~d~vi~~GG---DGTv--------~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 24 VIRIHQEKGYLVVPYRISLEYD-LKNAF-KDIDESYKYILIAGG---DGTV--------DNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHHHHHCCcEEEEEEccCcch-HHHHH-HHhhcCCCEEEEECC---ccHH--------HHHHHHHHhcCCCCcEEEECC
Confidence 334445567765543333 333 33333 333457787766533 3433 4455666654 5699999998
Q ss_pred CCCCCCCC
Q 027929 186 PDDSRSQH 193 (217)
Q Consensus 186 ~~~~~~~~ 193 (217)
..-+.-..
T Consensus 91 GTgNdfAr 98 (295)
T PRK13059 91 GTANDFAK 98 (295)
T ss_pred CCHhHHHH
Confidence 76665444
No 242
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=34.11 E-value=2.8e+02 Score=23.23 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.3
Q ss_pred cCceEEEEEeecC---ChHHHHHHHHHHcCCCEEEEecC
Q 027929 115 AGLQYKIHIVKDH---DMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 115 ~~v~v~~~v~~g~---~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.|+.....-.... .....+.+..+++++|+||+.+-
T Consensus 137 ~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 137 FDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred cCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 5777665555442 23456888999999999999864
No 243
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.08 E-value=2.5e+02 Score=24.53 Aligned_cols=40 Identities=10% Similarity=0.285 Sum_probs=26.5
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+..+..++.+..++ +..-...+.+.+.+.++|+|++-.+
T Consensus 125 i~~vr~a~VtvkiRl--~~~~~~e~a~~l~eAGad~I~ihgr 164 (369)
T TIGR01304 125 IAEVRDSGVITAVRV--SPQNAREIAPIVVKAGADLLVIQGT 164 (369)
T ss_pred HHHHHhcceEEEEec--CCcCHHHHHHHHHHCCCCEEEEecc
Confidence 344444555555555 3224678899999999999998643
No 244
>COG1162 Predicted GTPases [General function prediction only]
Probab=34.07 E-value=2.9e+02 Score=23.44 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=52.8
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCC-eEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGD-AVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~-~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
|+|+.-.-+-+...++..+-+|...+. +|+++.-++-... +.... +
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~---------------------------~~~~~------~ 131 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD---------------------------EEAAV------K 131 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc---------------------------hHHHH------H
Confidence 344444445566677777777777676 5666655432110 00000 1
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRS 160 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~ 160 (217)
+........|+.+-.......+..+.|..+.+.+ -.+++|.+|=|++.+-..
T Consensus 132 ~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~--~svl~GqSGVGKSSLiN~ 183 (301)
T COG1162 132 ELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK--ITVLLGQSGVGKSTLINA 183 (301)
T ss_pred HHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC--eEEEECCCCCcHHHHHHh
Confidence 1222233346655444444445677788877643 778888887446665554
No 245
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.06 E-value=2e+02 Score=22.17 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=23.5
Q ss_pred cCceEEEEEeec---CChHHHHHHHHHHcCCCEEEEecC
Q 027929 115 AGLQYKIHIVKD---HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 115 ~~v~v~~~v~~g---~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.++.+... .| .+-.+.|++.+.+.++|+|++|-.
T Consensus 73 P~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 73 PKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred CCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35665543 44 122367899999999999999954
No 246
>PRK02929 L-arabinose isomerase; Provisional
Probab=33.70 E-value=2.3e+02 Score=25.95 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHhhhhhhcC-ceEEEEEeec-CChHHHHHHHHHHcC----CCEEEEecCCCCCCcccccCCccccchhHHHhcCC
Q 027929 103 TNAKNIAEPLEEAG-LQYKIHIVKD-HDMKERLCLEVERLG----LSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC 176 (217)
Q Consensus 103 ~~~~~~~~~~~~~~-v~v~~~v~~g-~~~~~~I~~~a~~~~----~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a 176 (217)
++.+++.+.+...+ +.+++. ..+ -+-.+.|.+.+++.+ +|.||+--+. .+. ++..-.+++..
T Consensus 29 ~~~~~i~~~l~~~~~~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~T--Fs~---------a~~~i~~~~~l 96 (499)
T PRK02929 29 EHAEEIVDGLNASGKLPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHT--FSP---------AKMWIRGLSAL 96 (499)
T ss_pred HHHHHHHHHhcccCCCCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCC--Cch---------HHHHHHHHHHc
Confidence 44455555554422 334443 222 122556667777666 9999998665 221 34555678889
Q ss_pred CccEEEEeC
Q 027929 177 VCPVVVLRY 185 (217)
Q Consensus 177 ~~PVlvv~~ 185 (217)
.+|||+...
T Consensus 97 ~~PvL~~~~ 105 (499)
T PRK02929 97 QKPLLHLHT 105 (499)
T ss_pred CCCEEEEec
Confidence 999999976
No 247
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.49 E-value=61 Score=28.69 Aligned_cols=17 Identities=35% Similarity=0.135 Sum_probs=9.6
Q ss_pred HHHHhCCCCCeEEEEEE
Q 027929 45 AVENYLRPGDAVVLLHV 61 (217)
Q Consensus 45 A~~la~~~~~~l~lvhV 61 (217)
|...+.....-+.++|-
T Consensus 15 A~~~~~~I~~~~~i~Hg 31 (426)
T cd01972 15 AFCILSGIRDAVVVQHG 31 (426)
T ss_pred HHHHHhccCCeEEEEeC
Confidence 34444455566677775
No 248
>PRK09206 pyruvate kinase; Provisional
Probab=33.36 E-value=87 Score=28.37 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
.++...++.+...++.+||+-+++ |+++..+.+. -.|||+.+-+..
T Consensus 357 ~ia~sa~~~A~~l~a~aIv~~T~s--------------G~tA~~is~~RP~~pIia~t~~~ 403 (470)
T PRK09206 357 AVCRGAVETAEKLDAPLIVVATQG--------------GKSARSVRKYFPDATILALTTNE 403 (470)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEECCCH
Confidence 356677788888999999998776 7888888877 459999886543
No 249
>PRK14072 6-phosphofructokinase; Provisional
Probab=33.24 E-value=1.6e+02 Score=26.13 Aligned_cols=37 Identities=8% Similarity=-0.109 Sum_probs=26.7
Q ss_pred CCcEEEEEecCChh--HHHHHHHHHHHhCCCC--CeEEEEE
Q 027929 24 AQRKIAIAVDLSDE--SAYAVRWAVENYLRPG--DAVVLLH 60 (217)
Q Consensus 24 ~~~~IlVavD~s~~--s~~al~~A~~la~~~~--~~l~lvh 60 (217)
|.++|.|.+.|.+. -..+++.++..|.+.+ .+|+.++
T Consensus 2 ~~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~ 42 (416)
T PRK14072 2 MKGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGAR 42 (416)
T ss_pred CCceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 46899999988764 3567777888887776 5665554
No 250
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=33.24 E-value=2.6e+02 Score=22.62 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=25.4
Q ss_pred cCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecC
Q 027929 115 AGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 115 ~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
-|+.+......| .+-.+.|.+..+..++|.||.|.-
T Consensus 58 ~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 58 MGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred cCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchh
Confidence 366655444444 224677888888999999999975
No 251
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=33.12 E-value=79 Score=27.79 Aligned_cols=11 Identities=36% Similarity=0.277 Sum_probs=6.8
Q ss_pred CCCCeEEEEEE
Q 027929 51 RPGDAVVLLHV 61 (217)
Q Consensus 51 ~~~~~l~lvhV 61 (217)
....-+.++|-
T Consensus 21 ~I~~~~~l~Hg 31 (410)
T cd01968 21 PITDAAHLVHG 31 (410)
T ss_pred ccCcEEEEecC
Confidence 34556777775
No 252
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.08 E-value=2.8e+02 Score=24.11 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=39.4
Q ss_pred eEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 118 QYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 118 ~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+++...... + ....++.+++...|.|.|.-.- ....++ ...+++++..++||+++-.
T Consensus 26 ~i~vv~~a~-n-g~~a~~~~~~~~PDVi~ld~em---p~mdgl------~~l~~im~~~p~pVimvss 82 (350)
T COG2201 26 DIEVVGTAR-N-GREAIDKVKKLKPDVITLDVEM---PVMDGL------EALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred CeEEEEecC-C-HHHHHHHHHhcCCCEEEEeccc---ccccHH------HHHHHHhcCCCCcEEEEec
Confidence 344333333 4 5567788888999999999663 222232 4567888889999999976
No 253
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=32.93 E-value=69 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+..+.+.+.+.+.++|+||+-..
T Consensus 19 e~l~~l~~~~~e~~~D~~v~~G~ 41 (255)
T PF14582_consen 19 ELLERLVEVIPEKGPDAVVFVGD 41 (255)
T ss_dssp HHHHHHHHHHHHHT-SEEEEES-
T ss_pred HHHHHHHhhccccCCCEEEEecc
Confidence 34567888888888998887643
No 254
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.71 E-value=78 Score=28.11 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=43.9
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC--CCccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH--CVCPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~--a~~PVlvv~~~~~ 188 (217)
+.-.|++|+..-.....-++.+++..+.. .|.|++.... + -+|.+...|+++ ..|||-++|-+..
T Consensus 88 lHLaG~~V~Ivktd~~gqak~l~e~~~t~-~Dii~VaGGD---G--------T~~eVVTGi~Rrr~~~~pv~~~P~G~~ 154 (535)
T KOG4435|consen 88 LHLAGVQVDIVKTDNQGQAKALAEAVDTQ-EDIIYVAGGD---G--------TIGEVVTGIFRRRKAQLPVGFYPGGYD 154 (535)
T ss_pred eeeccceEEEEecCcHHHHHHHHHHhccC-CCeEEEecCC---C--------cHHHhhHHHHhcccccCceeeccCccc
Confidence 34468888766655444578888888654 4777776432 2 346666778876 6799999986554
No 255
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=32.68 E-value=1.4e+02 Score=24.89 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++++.+-..||..++...... -.+.|.++|++.++..||+-..+
T Consensus 24 ~iv~~LW~~gIsAd~~~~~~~-S~Eel~~~~~~~gi~wiViikq~ 67 (273)
T PF12745_consen 24 EIVQELWAAGISADLMYDASP-SQEELQSYCREDGISWIVIIKQK 67 (273)
T ss_pred HHHHHHHHCCCceEeccccCC-CHHHHHHHHHHCCCCEEEEEecc
Confidence 456667778999888666553 48899999999999999998763
No 256
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=32.63 E-value=3e+02 Score=23.49 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=37.2
Q ss_pred HhhhhhhcCceEEEE-EeecCC---hHHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 108 IAEPLEEAGLQYKIH-IVKDHD---MKERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~-v~~g~~---~~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.+.+...++.+... ...++. ..+.+++.+++.++|.|| +|..+ - -.++..+.-...+|++.
T Consensus 41 v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs--~-----------~D~aK~ia~~~~~p~i~ 107 (345)
T cd08171 41 IKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGK--A-----------IDTVKVLADKLGKPVFT 107 (345)
T ss_pred HHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH--H-----------HHHHHHHHHHcCCCEEE
Confidence 344444457765432 233321 244677778888999988 66433 1 12333333334789999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
||-.
T Consensus 108 VPTt 111 (345)
T cd08171 108 FPTI 111 (345)
T ss_pred ecCc
Confidence 9864
No 257
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.54 E-value=1.3e+02 Score=21.47 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=28.5
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++..|.++ ...-...+.+.+++.+.+.++|+|++....
T Consensus 23 l~~~G~~v--i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 23 LRDAGFEV--IYTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 34456654 444445678899999999999999998775
No 258
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=32.49 E-value=2.6e+02 Score=22.98 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=9.2
Q ss_pred HHHHHHHcCCCEEEEec
Q 027929 133 LCLEVERLGLSAMIMGG 149 (217)
Q Consensus 133 I~~~a~~~~~dlIVlG~ 149 (217)
+++.+...++|-||+..
T Consensus 46 ~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 46 QIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 44445555666666543
No 259
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.44 E-value=1.1e+02 Score=22.49 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...+|+++.=+.+.....+.....+++..|-+++.+-..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 345777777666666666666666776778887776654
No 260
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=1.2e+02 Score=21.77 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+.|-++. +.+++.||+|+.. .+.+ -++.-+...++.-.|-|++.|-++
T Consensus 51 ~eEle~~l-ee~~E~ivvGTG~--~G~l------~l~~ea~e~~r~k~~~vi~~pT~E 99 (121)
T COG1504 51 LEELEELL-EEGPEVIVVGTGQ--SGML------ELSEEAREFFRKKGCEVIELPTPE 99 (121)
T ss_pred HHHHHHHH-hcCCcEEEEecCc--eeEE------EeCHHHHHHHHhcCCeEEEeCCHH
Confidence 34455555 4699999999876 4433 246778899999999999988543
No 261
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.31 E-value=55 Score=27.50 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHcCCCE-----EEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCC
Q 027929 129 MKERLCLEVERLGLSA-----MIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQ 192 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dl-----IVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~ 192 (217)
...++++..+.+++++ +|+|++. ++|--...++.+..+.|.+++...++-+.
T Consensus 142 Tp~avi~ll~~y~i~l~Gk~vvViGrS~------------iVGkPla~lL~~~~atVt~chs~T~~l~~ 198 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTGKNAVVVGRSP------------ILGKPMAMLLTEMNATVTLCHSKTQNLPS 198 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCC------------cchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence 3678999999888765 9999765 55655566777777899999866554433
No 262
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=32.04 E-value=2.6e+02 Score=23.38 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=44.5
Q ss_pred HHHHHhhhhhhcCceEEEEEee--c------------CChHHHHHHHHHHcCCCEEE--EecCCCCCCcccccCCccccc
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVK--D------------HDMKERLCLEVERLGLSAMI--MGGRGIGIGAVRRSSVGRLGS 167 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~--g------------~~~~~~I~~~a~~~~~dlIV--lG~~~~~~~~~~~~~~~~~gS 167 (217)
..+++.+.++..|+.++.++-. | ++ .+...++.++.++|+|. +|.. ++...+. ..+-=.
T Consensus 116 ~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~-~eea~~f~~~tgvD~Lavs~Gt~---hg~~~~~-~~l~~e 190 (282)
T TIGR01859 116 LTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELAD-PDEAEQFVKETGVDYLAAAIGTS---HGKYKGE-PGLDFE 190 (282)
T ss_pred HHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCC-HHHHHHHHHHHCcCEEeeccCcc---ccccCCC-CccCHH
Confidence 4556777778889888876633 0 13 45567777778999999 4542 1112111 001112
Q ss_pred hhHHHhcCCCccEEEEe
Q 027929 168 VSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 168 ~s~~ll~~a~~PVlvv~ 184 (217)
.-+.+-+...+|+...-
T Consensus 191 ~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 191 RLKEIKELTNIPLVLHG 207 (282)
T ss_pred HHHHHHHHhCCCEEEEC
Confidence 33556666789987664
No 263
>PF05716 AKAP_110: A-kinase anchor protein 110 kDa (AKAP 110); InterPro: IPR018292 This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction []. This entry represents a sub group of the A-kinase anschor 110kDa protein.
Probab=31.88 E-value=1.1e+02 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=20.8
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLS 143 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~d 143 (217)
+...+.++|..| | ++..++++|+++.+-|
T Consensus 638 vs~ra~EKgwkV------G-DLLQAVLkYcke~Q~d 666 (685)
T PF05716_consen 638 VSARAREKGWKV------G-DLLQAVLKYCKERQLD 666 (685)
T ss_pred HHHHHHHcCCcH------H-HHHHHHHHHHHHHhhh
Confidence 344445567776 5 8999999999976544
No 264
>PRK05826 pyruvate kinase; Provisional
Probab=31.86 E-value=1e+02 Score=27.87 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHcC-CCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCC
Q 027929 128 DMKERLCLEVERLG-LSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYP 186 (217)
Q Consensus 128 ~~~~~I~~~a~~~~-~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~ 186 (217)
.++...++.+...+ +++||+-+++ |.++..+.+. -+|||+++-+.
T Consensus 359 ~ia~aa~~~a~~l~~a~~Ivv~T~s--------------G~ta~~isk~RP~~pI~~~t~~ 405 (465)
T PRK05826 359 AIAMSAMYAANHLKGVKAIVALTES--------------GRTARLISRFRPGAPIFAVTRD 405 (465)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEcCC
Confidence 35666778888888 9888887765 6788888887 45999988544
No 265
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.80 E-value=95 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=20.4
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
|++++=.++...-.+..+..+.+..|-+++.+-..
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 45555445544555555666666667776666553
No 266
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.80 E-value=2.5e+02 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=16.3
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEe
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMG 148 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG 148 (217)
+...|..+......+..-...+++.+...++|-||+.
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 61 (266)
T cd06278 25 LQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVT 61 (266)
T ss_pred HHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEe
Confidence 3344555443333321112234444445566666654
No 267
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=31.76 E-value=1.9e+02 Score=23.54 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHhhhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+++.|+++......+ +. ...+++.+...++|-||++... .... ...-..++...+|++++-
T Consensus 47 ~i~~~~~~~G~~~~~~~~~~-d~~~~~~~~~~l~~~~~dgiii~~~~--~~~~---------~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 47 GAQKEADKLGYNLVVLDSQN-NPAKELANVQDLTVRGTKILLINPTD--SDAV---------GNAVKMANQANIPVITLD 114 (295)
T ss_pred HHHHHHHHcCCeEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcCCC--hHHH---------HHHHHHHHHCCCCEEEEc
Confidence 34444555687765533322 33 3345556667789988887543 1111 111245566789999985
No 268
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=31.64 E-value=63 Score=29.77 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC-C----CCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRG-I----GIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~-~----~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
..++|+..|++.++|+|++|.-= | |+..+-+ .++..-++|+..-+|-+=++-+..
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~----~i~lLRryClgdkP~~le~lSD~s 99 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHR----CLELLRRYCLGDKPVQLEILSDQS 99 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHH----HHHHHHHHccCCCceeeEEecccc
Confidence 47899999999999999999632 0 0222211 134455566665566555554433
No 269
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=31.61 E-value=1.9e+02 Score=24.33 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=48.1
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhcCCC--ccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVHHCV--CPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~~a~--~PVlvv~~~~~ 188 (217)
..+.+..+-.--........++++.|++.+..+|+..+.+ .... .+. ..+......+++.++ +||.+-=+...
T Consensus 13 A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~~--~~~~~~~~~~A~~~~~~vPV~lHLDHg~ 88 (286)
T PRK08610 13 AKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEG--AARYMSGF--YTVVKMVEGLMHDLNITIPVAIHLDHGS 88 (286)
T ss_pred HHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 3334544444444444678899999999999999998876 3322 211 135667777888877 78887655544
No 270
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.60 E-value=2.8e+02 Score=25.52 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred EEEEEeecCChHHHHHHH---HHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 119 YKIHIVKDHDMKERLCLE---VERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 119 v~~~v~~g~~~~~~I~~~---a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
++..+..| +..+++-.. ....++|+||-. |+++..|-++.+.||+-|+-..
T Consensus 30 ~~~~v~~~-~~~~~~~~a~~~~~~~~~dviIsr-----------------G~ta~~i~~~~~iPVv~i~~s~ 83 (526)
T TIGR02329 30 ANITPIQL-GFEDAVREIRQRLGAERCDVVVAG-----------------GSNGAYLKSRLSLPVIVIKPTG 83 (526)
T ss_pred ceEEEEec-cHHHHHHHHHHHHHhCCCcEEEEC-----------------chHHHHHHHhCCCCEEEecCCh
Confidence 44556666 444444322 445578877633 4677777778899999887544
No 271
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=31.47 E-value=3.4e+02 Score=23.29 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCCEEEEecCC-CCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 141 GLSAMIMGGRG-IGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 141 ~~dlIVlG~~~-~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+.-||+|++. =+.+++... --+++..-+++|-..||+|+-+-
T Consensus 230 rVnKVIigt~avl~NGgl~~~---~G~~~vAlaAk~h~vPv~VlAp~ 273 (353)
T KOG1465|consen 230 RVNKVIIGTHAVLANGGLRAP---SGVHTVALAAKHHSVPVIVLAPM 273 (353)
T ss_pred hcceEEEEeeeEecCCCeecc---chHHHHHHHHHhcCCcEEEecch
Confidence 46678899875 002333222 22455566778888999998543
No 272
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=31.47 E-value=3.5e+02 Score=23.56 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=26.2
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
....+|+|++.|.-.|.-++.++. ..+.+|+.+|+
T Consensus 3 ~~~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~ 37 (362)
T PRK14664 3 ESKKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTM 37 (362)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEe
Confidence 345799999999988877665433 34678888888
No 273
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=31.43 E-value=2.7e+02 Score=22.51 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=33.3
Q ss_pred cCceEEEEEeecC-ChHHHHHHHHH---HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 115 AGLQYKIHIVKDH-DMKERLCLEVE---RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 115 ~~v~v~~~v~~g~-~~~~~I~~~a~---~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+..+.+....=. .-.+.+.+.++ +.++|+|||-.-| .+.- .-+.+-+.+.+||++-+
T Consensus 148 l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmG--Yt~~----------~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 148 LGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMG--YTQE----------MRDIVQRALGKPVLLSR 209 (221)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCC--CCHH----------HHHHHHHHhCCCEEeHH
Confidence 3444444444311 12455665555 4589999999887 3322 22345556889998743
No 274
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=31.43 E-value=1.1e+02 Score=24.95 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 127 HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 127 ~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
+...+.+++.+.+.+.|.|++|.+. .+. .+-.+...+-+..+.||++.|.....-.
T Consensus 18 K~~~~~~~~~~~~~gtDai~VGGS~------~~~---~~d~vv~~ik~~~~lPvilfPg~~~~vs 73 (230)
T PF01884_consen 18 KPNPEEALEAACESGTDAIIVGGSD------TGV---TLDNVVALIKRVTDLPVILFPGSPSQVS 73 (230)
T ss_dssp SS-HHHHHHHHHCTT-SEEEEE-ST------HCH---HHHHHHHHHHHHSSS-EEEETSTCCG--
T ss_pred CCCcHHHHHHHHhcCCCEEEECCCC------Ccc---chHHHHHHHHhcCCCCEEEeCCChhhcC
Confidence 3445667777778899999999663 122 2234444455559999999986655443
No 275
>PTZ00066 pyruvate kinase; Provisional
Probab=31.32 E-value=1.1e+02 Score=28.17 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYPD 187 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~~ 187 (217)
.++...++.|...++.+||+-+++ |.++..+.+.- +||++.+-+..
T Consensus 398 ~ia~aa~~~A~~l~a~aIv~~T~S--------------G~TAr~iSk~RP~~pIia~t~~~ 444 (513)
T PTZ00066 398 AVARSAVETAEDINAKLIIALTET--------------GNTARLISKYRPSCTILALSASP 444 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEECCCH
Confidence 467788889999999999998876 77888888874 59999885433
No 276
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=31.28 E-value=1.7e+02 Score=24.96 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+.+++.+++.++|.|| +|... ...++..+.-...+|++.||-..
T Consensus 67 v~~~~~~~~~~~~d~iIaiGGGs-------------~~D~aK~~a~~~~~p~i~iPTT~ 112 (339)
T cd08173 67 VEKVESSARDIGADFVIGVGGGR-------------VIDVAKVAAYKLGIPFISVPTAA 112 (339)
T ss_pred HHHHHHHhhhcCCCEEEEeCCch-------------HHHHHHHHHHhcCCCEEEecCcc
Confidence 45677777888999888 55332 23444444445678999998544
No 277
>PRK06354 pyruvate kinase; Provisional
Probab=31.17 E-value=96 Score=28.99 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
++...++.|...++++||+-+++ |+++..+.+. -+|||+.+-+..
T Consensus 365 ia~aa~~~a~~~~a~~Iv~~T~s--------------G~ta~~vsk~Rp~~pI~a~t~~~ 410 (590)
T PRK06354 365 ISQAVSHIALQLDAAAIVTLTKS--------------GATARNVSKYRPKTPILAVTPNE 410 (590)
T ss_pred HHHHHHHHHhhcCCCEEEEECCC--------------hHHHHHHHhhCCCCCEEEECCCH
Confidence 45666777889999999998776 7888888887 459999986543
No 278
>PRK05568 flavodoxin; Provisional
Probab=31.15 E-value=1.8e+02 Score=20.95 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+++.+...|+.++..-+...+.. .-.++|.||+|+.-
T Consensus 19 a~~i~~~~~~~g~~v~~~~~~~~~~~-------~~~~~d~iilgsp~ 58 (142)
T PRK05568 19 ANLIAEGAKENGAEVKLLNVSEASVD-------DVKGADVVALGSPA 58 (142)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCHH-------HHHhCCEEEEECCc
Confidence 34455555556777665544442221 12479999999875
No 279
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=31.08 E-value=1.7e+02 Score=25.16 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=46.5
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccC-CccccchhHHHhcCC--CccEEEEeCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSS-VGRLGSVSDYCVHHC--VCPVVVLRYPD 187 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~-~~~~gS~s~~ll~~a--~~PVlvv~~~~ 187 (217)
...+.+..+-.--+.+.....++++.|++.+..+|+..+.+ .....+.. ...+......+++.+ ++||.+-=+..
T Consensus 18 ~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg 95 (321)
T PRK07084 18 KAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKG--ARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHG 95 (321)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechh--HHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 33444555544445555679999999999999999998876 32222200 001233445566666 68988765554
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
.
T Consensus 96 ~ 96 (321)
T PRK07084 96 D 96 (321)
T ss_pred C
Confidence 3
No 280
>PRK06455 riboflavin synthase; Provisional
Probab=30.42 E-value=2.1e+02 Score=21.78 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=40.6
Q ss_pred cCceEEEEEeec-CChHHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEe
Q 027929 115 AGLQYKIHIVKD-HDMKERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLR 184 (217)
Q Consensus 115 ~~v~v~~~v~~g-~~~~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~ 184 (217)
.+.++....+.| .++.-++-+.+++.++|.|| +|.-+ .+..... ....++..|++ ....||+-|=
T Consensus 29 ~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG--~t~h~d~---Va~~vS~GL~~lsL~t~~PVi~v~ 98 (155)
T PRK06455 29 PSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPG--PTEKDKY---CAHEASIGLIMAQLMTNKHIIEVF 98 (155)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEeccee--ccCcchh---HHHHHHHHHHHHHhhhCCCEEEEE
Confidence 356777777777 22333455666667788765 67666 5555555 55566666655 4578887663
No 281
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=30.27 E-value=1.7e+02 Score=24.61 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=50.2
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRR-SSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~-~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+..++.+..+-.--+.+..-..+|++.|++.+...||=.+.+. .....+ . .+-.....++.+.++||.+-=+..
T Consensus 10 l~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~-~~y~gg~~---~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 10 LDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGA-AKYAGGAD---SLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccH-HHHhchHH---HHHHHHHHHHHHCCCCEEEECCCC
Confidence 33344445555555555556789999999999999999998872 222211 1 233455677888889998876655
Q ss_pred C
Q 027929 188 D 188 (217)
Q Consensus 188 ~ 188 (217)
.
T Consensus 86 ~ 86 (286)
T COG0191 86 A 86 (286)
T ss_pred C
Confidence 4
No 282
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.21 E-value=55 Score=25.89 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+++.+...+.|..+...+--| +-..-+..+.+.++|.+|+|+-
T Consensus 153 I~~l~~~~~~~~~~~~I~vDGG--I~~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 153 IRELRKLIPENGLDFEIEVDGG--INEENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp HHHHHHHHHHHTCGSEEEEESS--ESTTTHHHHHHHT--EEEESHH
T ss_pred HHHHHHHHHhcCCceEEEEECC--CCHHHHHHHHHcCCCEEEECHH
Confidence 3344455555566555555444 4445555566679999999963
No 283
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=30.13 E-value=85 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.6
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 28 IAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 28 IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
|+|++.|.-.|.-++.|+.+. .+.+|+.+|+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d 32 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTAD 32 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEE
Confidence 588999999999888887654 34589999995
No 284
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=29.93 E-value=1.5e+02 Score=21.68 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=27.6
Q ss_pred CCCCcEEEEEecCC--h----hHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 22 NGAQRKIAIAVDLS--D----ESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 22 ~~~~~~IlVavD~s--~----~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
....++|.+|.|.. + +-.+++.....+..+.++.+.++.-
T Consensus 65 ~~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w 110 (130)
T PF12965_consen 65 AKPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITW 110 (130)
T ss_pred ccCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34679999999987 3 2335555556666677888777654
No 285
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.89 E-value=3.6e+02 Score=24.15 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHHH--cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 130 KERLCLEVER--LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 130 ~~~I~~~a~~--~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
...|++..++ .++|.||+.--+ ++.+... ...-.+.+++..||||=|++..
T Consensus 130 ~~~ll~~~~~~l~~~~~vVLSDY~--KG~L~~~------q~~I~~ar~~~~pVLvDPKg~D 182 (467)
T COG2870 130 ENKLLEKIKNALKSFDALVLSDYA--KGVLTNV------QKMIDLAREAGIPVLVDPKGKD 182 (467)
T ss_pred HHHHHHHHHHHhhcCCEEEEeccc--cccchhH------HHHHHHHHHcCCcEEECCCCcc
Confidence 4455555554 678899998777 5544322 2334567788899998876554
No 286
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=29.80 E-value=98 Score=26.01 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCC-----CEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCCCCCC
Q 027929 130 KERLCLEVERLGL-----SAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHDSRDD 198 (217)
Q Consensus 130 ~~~I~~~a~~~~~-----dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~~~~~ 198 (217)
..+|.+..+.+++ +.+|+|++. ++|.--..++....|.|.+.+...++......+.|
T Consensus 140 p~gi~~ll~~~~i~l~Gk~~vVVGrS~------------iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~AD 201 (283)
T COG0190 140 PAGIMTLLEEYGIDLRGKNVVVVGRSN------------IVGKPLALLLLNANATVTVCHSRTKDLASITKNAD 201 (283)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCC------------cCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCC
Confidence 6688888888777 568999665 55666667788899999999887766655544443
No 287
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.58 E-value=1.9e+02 Score=21.25 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=23.7
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHH--cCCCEEEEec
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVER--LGLSAMIMGG 149 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~--~~~dlIVlG~ 149 (217)
+.+.+.|.++.....-.++ .+.|.+..++ .++|+||...
T Consensus 34 ~~l~~~G~~v~~~~~v~Dd-~~~i~~~l~~~~~~~DliIttG 74 (144)
T TIGR00177 34 ALLEEAGFNVSRLGIVPDD-PEEIREILRKAVDEADVVLTTG 74 (144)
T ss_pred HHHHHCCCeEEEEeecCCC-HHHHHHHHHHHHhCCCEEEECC
Confidence 3344568887766666645 4445544432 3799999864
No 288
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.38 E-value=2.4e+02 Score=24.67 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=38.0
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHH-hcCCCccEEEEeCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC-VHHCVCPVVVLRYPD 187 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l-l~~a~~PVlvv~~~~ 187 (217)
+...|++++.. .. + .+-.+.....+|.+++|+.+ -.....+ .--+|+-.-.+ +++..+|++|+-+..
T Consensus 223 L~~~GIpvtlI--~D-s---a~~~~m~~~~Vd~VivGAD~--I~~NG~v-~NKiGTy~lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 223 LMEEGIKVTLI--TD-T---AVGLVMYKDMVNNVMVGADR--ILRDGHV-FNKIGTFKEAVIAHELGIPFYALAPTS 290 (363)
T ss_pred HHHCCCCEEEE--eh-h---HHHHHHhhcCCCEEEECccE--EecCCCE-eehhhhHHHHHHHHHhCCCEEEEcccc
Confidence 44468886543 22 1 12223334689999999876 3332222 00146555444 467889999986543
No 289
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.23 E-value=1.5e+02 Score=23.97 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCCCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYPDDSR 190 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~~~~~ 190 (217)
.+.+.+.|.+.+.|.|++|.+. --. .. +..+...+-+... .||++.|.....-
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~--~v~-~~-----~~~~~~~ik~~~~~~Pvilfp~~~~~i 67 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSD--GVS-ST-----LDNVVRLIKRIRRPVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCcc--chh-hh-----HHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 4557777877889999999775 111 11 2223332222333 9999998766654
No 290
>PRK05569 flavodoxin; Provisional
Probab=29.12 E-value=2e+02 Score=20.70 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=22.8
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+++.+...|..++..-+...+.. .-.++|.|++|+.-
T Consensus 19 A~~i~~~~~~~g~~v~~~~~~~~~~~-------~~~~~d~iilgsPt 58 (141)
T PRK05569 19 ANTIADGAKEAGAEVTIKHVADAKVE-------DVLEADAVAFGSPS 58 (141)
T ss_pred HHHHHHHHHhCCCeEEEEECCcCCHH-------HHhhCCEEEEECCC
Confidence 34445555556766654444332221 22479999999875
No 291
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=29.00 E-value=4e+02 Score=23.38 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
-+...+++|++.|.-+|--++-++.. .|.++.++|+.
T Consensus 173 ~g~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~ 209 (394)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFH 209 (394)
T ss_pred cCCCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEe
Confidence 45667999999999888877766544 47899999994
No 292
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.93 E-value=81 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=9.3
Q ss_pred HhCCCCCeEEEEEE
Q 027929 48 NYLRPGDAVVLLHV 61 (217)
Q Consensus 48 la~~~~~~l~lvhV 61 (217)
.+....+-+.++|-
T Consensus 51 ~~~~I~da~~lvHG 64 (475)
T PRK14478 51 VLQPITDVAHLVHG 64 (475)
T ss_pred HhhccCCEEEEEEC
Confidence 33456677888885
No 293
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=28.91 E-value=3e+02 Score=23.07 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=49.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
+|-|++.....+..-++-|-.+.++.+.. .++|+.-+..+ ..+.+....+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf----------------------~~e~EttIsk------- 53 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNF----------------------MSEQETTISK------- 53 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTG----------------------GGCHHHHHHH-------
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcc----------------------cchHHHHHHH-------
Confidence 57777777777777777777777776665 77887543322 1112222211
Q ss_pred HHhhhhhhcCceEEEEEeecCCh-HHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDM-KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~-~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++... .+-.++..|+....+ .-..++-+++...|+|.+....
T Consensus 54 -I~~lA--dDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~ 96 (275)
T PF12683_consen 54 -IVSLA--DDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEP 96 (275)
T ss_dssp -HHGGG--G-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS-
T ss_pred -HHHhc--cCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCC
Confidence 22211 245566666665333 2246777888999999999775
No 294
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=28.87 E-value=1.8e+02 Score=21.48 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=34.2
Q ss_pred HhhhhhhcCceEEEEEeecC----ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKDH----DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~----~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+...+...|+.+...+-.|. +..+.|-.++++-+...|++=-.+ .+.-++ |+ ..+++..++ +||+++
T Consensus 17 ~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~--~~d~~~----f~-~~~~~a~~~--KPVv~l 87 (138)
T PF13607_consen 17 ILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEG--IGDGRR----FL-EAARRAARR--KPVVVL 87 (138)
T ss_dssp HHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES----S-HHH----HH-HHHHHHCCC--S-EEEE
T ss_pred HHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccC--CCCHHH----HH-HHHHHHhcC--CCEEEE
Confidence 34445556888888887773 234444444445667777776665 443322 33 344444444 999999
Q ss_pred eCCCCCCC
Q 027929 184 RYPDDSRS 191 (217)
Q Consensus 184 ~~~~~~~~ 191 (217)
+......+
T Consensus 88 k~Grt~~g 95 (138)
T PF13607_consen 88 KAGRTEAG 95 (138)
T ss_dssp E-------
T ss_pred eCCCchhh
Confidence 98764443
No 295
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.59 E-value=2.4e+02 Score=22.36 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=20.8
Q ss_pred hhhhhcCceEEEEEeec-CChH--HHHHHHHHHcCCCEEEEecC
Q 027929 110 EPLEEAGLQYKIHIVKD-HDMK--ERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g-~~~~--~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.+.+.|..+......+ .+.. ..+++.+...++|-||+...
T Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 23 NEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred HHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 33444566655443322 2322 23455555667887777643
No 296
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=28.58 E-value=2e+02 Score=24.49 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+....++..+ ++|+||+|-.+- ..++--. +.=.-...-++.++.||+.|-+
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp-~TSI~P~---LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNP-VTSIGPI---LALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcc-HHHhhhh---ccchhHHHHHHhCCCCEEEEcC
Confidence 45667888886 489999996641 2333222 3322334577788999999876
No 297
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.54 E-value=2.4e+02 Score=21.38 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.-.+.|++.++..++|+|++|-..
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCC
Confidence 457789999999999999999553
No 298
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=28.49 E-value=97 Score=26.22 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=33.8
Q ss_pred eEEEEEeec----CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccc-cchhHHHhcCCCccEEEEeCCCCC
Q 027929 118 QYKIHIVKD----HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRL-GSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 118 ~v~~~v~~g----~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~-gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
.++.....+ -.+....+++.++ +|+||+|-.+- ...+--. +. .-+ ...++.++||++.|.+--..
T Consensus 158 ~I~~v~~~~~~~~~~~~p~~l~AI~~--AD~IiigPgs~-~TSI~P~---L~v~gi-~~Ai~~s~a~kV~V~ni~~~ 227 (300)
T PF01933_consen 158 PIRRVFLEGAPEEAKANPEALEAIEE--ADLIIIGPGSL-YTSIIPN---LLVPGI-REAIRESKAPKVYVSNIMTD 227 (300)
T ss_dssp -EEEEEEECTSTT--B-HHHHHHHHH---SEEEE-SS-C-CCCCHHH---HTSHHH-HHHHHHSSSEEEEE-SSB--
T ss_pred cccEEEEecCccccCCCHHHHHHHHh--CCEEEEcCCCc-hhhhccc---ccchhH-HHHHHhCCCCEEEEcCCCCC
Confidence 444444443 2345677777764 89999996651 3333332 32 334 45677777999999775443
No 299
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.47 E-value=1.7e+02 Score=21.43 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=37.4
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEE
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVL 183 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv 183 (217)
+..|..| ...-.....+.+++.+.+.++|.|+|.+.. ..... .+..+.+.|-... ....+++
T Consensus 27 ~~~GfeV--i~lg~~~s~e~~v~aa~e~~adii~iSsl~--~~~~~-----~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 27 ADLGFDV--DVGPLFQTPEEIARQAVEADVHVVGVSSLA--GGHLT-----LVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred HhCCcEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCch--hhhHH-----HHHHHHHHHHhcCCCCCEEEE
Confidence 3456654 333334567889999999999999998765 33332 3355666554432 2334444
No 300
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.46 E-value=1.2e+02 Score=23.06 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.|++.+++.++|+|++|-..
T Consensus 88 ~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 88 EEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHcCCCEEEEECCC
Confidence 4558999999999999999543
No 301
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.45 E-value=1.7e+02 Score=19.17 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=29.0
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCC-EEEEecC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLS-AMIMGGR 150 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~d-lIVlG~~ 150 (217)
.+.+++..++..|+.++...... . ...-+++|...++. +||+|..
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~~-~-l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRNE-R-PGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC-C-cccchhHHHhcCCCEEEEECCc
Confidence 34456666666788887755433 4 45567777888888 5556643
No 302
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=28.16 E-value=1.4e+02 Score=24.94 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=37.6
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYP 186 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~ 186 (217)
+.+...|+.++..+-. .+-|.-+ .+|++++|+-| --...++- -.+|...-. ++++.+.|+.|+-..
T Consensus 175 ~~L~~~~IPvtlvlDS-------aVgyvMe-~vD~VlVGAEG--VvEsGGII-N~iGTyq~~v~Ak~~~kPfYV~AES 241 (313)
T KOG1466|consen 175 KELKKLGIPVTLVLDS-------AVGYVME-RVDLVLVGAEG--VVESGGII-NKIGTYQVAVCAKSMNKPFYVVAES 241 (313)
T ss_pred HHHHhcCCCeEEEehh-------hHHHHHh-hccEEEEccce--eeecCcee-eecccchhhhhHHhcCCCeEEEeec
Confidence 3444568887644322 2334433 68999999987 32222220 024654444 556688999998543
No 303
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.10 E-value=2.4e+02 Score=20.47 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=26.5
Q ss_pred HHHHhhhhhhcCceEEEEEeecC----------------ChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDH----------------DMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~----------------~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+.+.+...|++++..-+... +-.+.|.+.. .++|.||+++.-
T Consensus 20 ~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iI~~sP~ 80 (152)
T PF03358_consen 20 AEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKL--KEADGIIFASPV 80 (152)
T ss_dssp HHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHH--HHSSEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhce--ecCCeEEEeecE
Confidence 33444455555777666655442 2234455555 459999999864
No 304
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.06 E-value=4e+02 Score=23.14 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=65.0
Q ss_pred CCCCcEEEEEecCC--hhHHHHHHHHHHHhC---CCCCeEE-EEEEEeCCcccCcccccccCCCCCCCcCCCccccccch
Q 027929 22 NGAQRKIAIAVDLS--DESAYAVRWAVENYL---RPGDAVV-LLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDS 95 (217)
Q Consensus 22 ~~~~~~IlVavD~s--~~s~~al~~A~~la~---~~~~~l~-lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (217)
.+...+++|-+... .+-..+++||.++.. +..+.+. ++-++-........|-++-.+..... .-.+.+
T Consensus 47 ~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldg------sf~i~~ 120 (348)
T PRK12756 47 NGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDG------SYRVNH 120 (348)
T ss_pred cCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCC------CccHHH
Confidence 45667888888754 466778888866653 3344444 44454322222233433322211111 111112
Q ss_pred HHHHHHHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEE---EEecCCCCCCcccccCCccccchhHHH
Q 027929 96 TETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAM---IMGGRGIGIGAVRRSSVGRLGSVSDYC 172 (217)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlI---VlG~~~~~~~~~~~~~~~~~gS~s~~l 172 (217)
.+ +.++++...+...|+.+-+++..-. .. ++-.|+| .+|++. .+ .-+-+.+
T Consensus 121 GL-----~~~R~ll~~i~~~GlP~atE~ld~~-~~--------qY~~DliSwgaIGARt-----~e-------sq~hre~ 174 (348)
T PRK12756 121 GL-----ELARKLLLQINELGLPTATEFLDMV-TG--------QYIADLISWGAIGART-----TE-------SQIHREM 174 (348)
T ss_pred HH-----HHHHHHHHHHHHcCCceeehhcccc-cH--------HHHHHHHhhhhhcccc-----cc-------CHHHHHH
Confidence 21 2233344344567888877776652 12 2335666 566664 11 2234566
Q ss_pred hcCCCccEEEE
Q 027929 173 VHHCVCPVVVL 183 (217)
Q Consensus 173 l~~a~~PVlvv 183 (217)
+...+|||.+=
T Consensus 175 ASgls~PVgfK 185 (348)
T PRK12756 175 ASALSCPVGFK 185 (348)
T ss_pred HhcCCCceEec
Confidence 67777888654
No 305
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.91 E-value=2.7e+02 Score=21.01 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhhhhcCce
Q 027929 39 AYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLEEAGLQ 118 (217)
Q Consensus 39 ~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~ 118 (217)
..-+..++.+|+..|++.+.+|...... ......+...+.+.+..+++.+.+.+.|+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~----------------------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPS----------------------GPEDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESS----------------------STTSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHHhCCCceeecCccccc----------------------ccCCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 5677888889988999998888631000 011111234444555666777777788998
Q ss_pred EEEEEeecCC--hH---HHHHHHHHHcCCC
Q 027929 119 YKIHIVKDHD--MK---ERLCLEVERLGLS 143 (217)
Q Consensus 119 v~~~v~~g~~--~~---~~I~~~a~~~~~d 143 (217)
+-.+-..+.. .. +.+.+++++.+-+
T Consensus 128 i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 128 IALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp EEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred EEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 8888766521 22 7888888877644
No 306
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.81 E-value=3.1e+02 Score=21.76 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 027929 130 KERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+.+++..++.++|+||+..-
T Consensus 67 ~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 67 PDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred hHHHHHHHHhcCCCEEEEeCc
Confidence 457888889999999999653
No 307
>PRK08349 hypothetical protein; Validated
Probab=27.68 E-value=1.3e+02 Score=23.41 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=25.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+++|++.|..+|--++-++.. .+.+|+++|+.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d 33 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFR 33 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEe
Confidence 3789999999988888754443 47799999995
No 308
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=27.65 E-value=1.6e+02 Score=24.01 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~ 193 (217)
..++.+.+.+.|.|++|.+. +-... -+..+.. .++..+.||++.|.....-...
T Consensus 23 ~~~~~~~~~gtdai~vGGS~---~vt~~----~~~~~v~-~ik~~~lPvilfp~~~~~i~~~ 76 (232)
T PRK04169 23 EALEAICESGTDAIIVGGSD---GVTEE----NVDELVK-AIKEYDLPVILFPGNIEGISPG 76 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCC---ccchH----HHHHHHH-HHhcCCCCEEEeCCCccccCcC
Confidence 34466667899999999774 11111 1233443 3444889999998665544433
No 309
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.65 E-value=1.8e+02 Score=22.65 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=34.6
Q ss_pred hhhcCceEEEEEeec-CCh---HHHHHHHHHHcCCC-EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKD-HDM---KERLCLEVERLGLS-AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g-~~~---~~~I~~~a~~~~~d-lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+...+..+.+....- ..+ .+.+.+.+++...+ .+++|++= + |=.+..+..+-.||.++|-+.
T Consensus 24 ~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSSl---G----------G~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 24 FAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSSL---G----------GFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEECh---H----------HHHHHHHHHHhCCCEEEEcCC
Confidence 333455554444332 122 34555666665554 88888662 2 335556777777877777543
No 310
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.58 E-value=3.2e+02 Score=21.76 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=36.7
Q ss_pred HHhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+.+.|..+......+ +.. ...++.....++|-||+.... .... -... +.+.....||+++-
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~-~~~~~~~~i~~~~~~~~Dgiii~~~~--~~~~--------~~~i-~~~~~~~iPvV~~~ 87 (282)
T cd06318 20 AAKAHAKALGYELISTDAQG-DLTKQIADVEDLLTRGVNVLIINPVD--PEGL--------VPAV-AAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--ccch--------HHHH-HHHHHCCCCEEEec
Confidence 34444555677765433322 443 246666778899999997543 1111 0111 23345778888884
No 311
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=27.50 E-value=2.9e+02 Score=22.68 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
=+.-.+...++..|..+...--+| ...+..+++.+...+..|++||-.+
T Consensus 90 YQiGAL~a~~~a~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lag 147 (252)
T COG1540 90 YQIGALQAFARAQGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAG 147 (252)
T ss_pred HHHHHHHHHHHhcCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCc
Confidence 344455566677888888776655 3457789999999999999999776
No 312
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.43 E-value=96 Score=21.74 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
....+.+++++..+..+...++ +++.++..|++++.+.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~-~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLA-ALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHH-HHHHHHHcCCeEEEEECCC
Confidence 3457789999999998888777 5777778888888877654
No 313
>PRK08005 epimerase; Validated
Probab=27.25 E-value=2.9e+02 Score=22.02 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=18.4
Q ss_pred eecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 124 VKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 124 ~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.| .+-..-+..+.+.++|.+|+|+.
T Consensus 168 VDG-GI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 168 ADG-GITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEC-CCCHHHHHHHHHCCCCEEEEChH
Confidence 345 45555666666789999999954
No 314
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=27.22 E-value=2.8e+02 Score=23.33 Aligned_cols=72 Identities=7% Similarity=0.001 Sum_probs=47.5
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhcCCC--ccEEEEeCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVHHCV--CPVVVLRYPDD 188 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~~a~--~PVlvv~~~~~ 188 (217)
.+.+..+-.--+.......++++.|++.+..+|+..+.+ .... .+. ..+......+++.+. +||.+-=+...
T Consensus 14 ~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~~VPV~lHLDHg~ 88 (285)
T PRK07709 14 LEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEG--AARHMTGF--KTVVAMVKALIEEMNITVPVAIHLDHGS 88 (285)
T ss_pred HHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhcCCH--HHHHHHHHHHHHHcCCCCcEEEECCCCC
Confidence 334554444444454678899999999999999998776 3222 111 134567788888776 68877655544
No 315
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.13 E-value=3.4e+02 Score=22.04 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhhhhcC
Q 027929 37 ESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLEEAG 116 (217)
Q Consensus 37 ~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (217)
.+..-++.++.+|+..+++.+.+|..... ..-.+...+.+.+..+++++.+++.|
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~-------------------------~~~~~~~~~~~~~~l~~l~~~a~~~g 136 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYL-------------------------GQSKEEGLKRVIEALNELIDKAETKG 136 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCC-------------------------CCCHHHHHHHHHHHHHHHHHhccCCC
Confidence 34556888999999999997766652110 00012223344455566676667788
Q ss_pred ceEEEEEeecC-----ChHHHHHHHHHHcC
Q 027929 117 LQYKIHIVKDH-----DMKERLCLEVERLG 141 (217)
Q Consensus 117 v~v~~~v~~g~-----~~~~~I~~~a~~~~ 141 (217)
+.+-.+...+. .-...+.+.+++.+
T Consensus 137 i~l~lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 137 VVIALETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 88777765442 22456667776654
No 316
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.11 E-value=1.4e+02 Score=22.01 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=27.2
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++..|.++ .-+--..+.+.+++.|++.++|+|.|.+-.
T Consensus 25 l~~~GfeV--i~LG~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 25 FTNAGFNV--VNLGVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 34456654 222223568999999999999999998764
No 317
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=27.09 E-value=2.3e+02 Score=24.59 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCccCCCCCCCcEEEEEecCChhH------HHHHHHHHHHhCCCCCeEE
Q 027929 15 TRVPLMTNGAQRKIAIAVDLSDES------AYAVRWAVENYLRPGDAVV 57 (217)
Q Consensus 15 p~~~~~~~~~~~~IlVavD~s~~s------~~al~~A~~la~~~~~~l~ 57 (217)
+..+......++++++|+|++.+- ..++.....+-...+.+.+
T Consensus 20 s~~~~~~~ds~k~lV~CfDGT~nrfg~qp~TNVv~Ly~sl~r~d~~~qv 68 (423)
T COG3673 20 SDLNLLAEDSMKRLVFCFDGTWNRFGAQPPTNVVLLYASLQRADGVTQV 68 (423)
T ss_pred CCCccccccCcceEEEEecCchhhcCCCCcchHHHHHHHHhcCCCceEE
Confidence 334444678899999999988542 4566665666544333333
No 318
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=27.06 E-value=79 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
...+.+..++.++|.||+|..|
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAG 184 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAG 184 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCcc
Confidence 4456677788999999999887
No 319
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=27.04 E-value=3.5e+02 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=14.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHh
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENY 49 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la 49 (217)
|.++||| =++-....++.|+++-.
T Consensus 1 ~~~kVLv--lG~G~re~al~~~l~~~ 24 (435)
T PRK06395 1 MTMKVML--VGSGGREDAIARAIKRS 24 (435)
T ss_pred CceEEEE--ECCcHHHHHHHHHHHhC
Confidence 3567777 34455677777776543
No 320
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=26.87 E-value=3.2e+02 Score=21.64 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhhcCceEEEEEee-c--------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVK-D--------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~-g--------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
+..+++.+.+.+.++.+-..... | .......++.+.+.++|+|-+...+ +. ...+++.
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~-------~~------~~~~~i~ 175 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG-------DA------ESFKEVV 175 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC-------CH------HHHHHHH
Confidence 34445556666678775544322 1 0112223455778899999885221 12 3446778
Q ss_pred cCCCccEEEEe
Q 027929 174 HHCVCPVVVLR 184 (217)
Q Consensus 174 ~~a~~PVlvv~ 184 (217)
+..++||++.-
T Consensus 176 ~~~~~pvv~~G 186 (235)
T cd00958 176 EGCPVPVVIAG 186 (235)
T ss_pred hcCCCCEEEeC
Confidence 88899987764
No 321
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=26.76 E-value=4.4e+02 Score=23.42 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhhhcCceEEEEE-ee-cCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 100 LTATNAKNIAEPLEEAGLQYKIHI-VK-DHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~v~v~~~v-~~-g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
...+..+++.+.+...++++...- +. ..+-...+++.++..++|.||+--.. .+ .++..-.+++..+
T Consensus 20 ~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~t--f~---------~~~~~~~~~~~~~ 88 (452)
T cd00578 20 QVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHT--FG---------PAKMWIAGLSELR 88 (452)
T ss_pred HHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccc--cc---------cHHHHHHHHHhcC
Confidence 333444455555554444332211 11 11124456677777789999987554 21 1233445567789
Q ss_pred ccEEEEeCCCC
Q 027929 178 CPVVVLRYPDD 188 (217)
Q Consensus 178 ~PVlvv~~~~~ 188 (217)
+|||+.-.++.
T Consensus 89 ~Pvll~a~~~~ 99 (452)
T cd00578 89 KPVLLLATQFN 99 (452)
T ss_pred CCEEEEeCCCC
Confidence 99999976553
No 322
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.73 E-value=1.4e+02 Score=20.96 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.|..++..-.... .+.++.. ++|++.+|-.- + ++-...++++....+||-+|+..
T Consensus 28 kg~~~~I~A~s~~----e~~~~~~--~~DvvLlGPQv-------~----y~~~~~~~~~~~~giPV~vI~~~ 82 (102)
T COG1440 28 KGKDVTIEAYSET----ELSEYID--NADVVLLGPQV-------R----YMLKQLKEAAEEKGIPVEVIDML 82 (102)
T ss_pred CCCceEEEEechh----HHHHhhh--cCCEEEEChHH-------H----HHHHHHHHHhcccCCCeEEeCHH
Confidence 5777665554442 3444443 79999999664 2 22335567888888999999753
No 323
>PF13155 Toprim_2: Toprim-like
Probab=26.51 E-value=1.3e+02 Score=19.93 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=25.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCC
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPG 53 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~ 53 (217)
..++|++|+|.......+.+.........+
T Consensus 46 ~~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 46 PYKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 337899999999999999998888776655
No 324
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=26.39 E-value=1.2e+02 Score=23.18 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=32.7
Q ss_pred cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCc-ccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGA-VRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~-~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
.|++ +...+.+.+..+....++++.++.++-++..+ ... ........+-.+-+.++....-||||....+..+
T Consensus 31 L~LK-TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~--~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~r 104 (164)
T PF03162_consen 31 LGLK-TIINLRPEPPSQDFLEFAEENGIKLIHIPMSS--SKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDR 104 (164)
T ss_dssp HT-S-EEEE--SS---HHHHHHHHHTT-EEEE---------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSH
T ss_pred CCCc-eEEEecCCCCCHHHHHHHhhcCceEEEecccc--ccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcc
Confidence 3554 23334444456677779999999999999776 332 1111000122233456677889999998777654
No 325
>PRK06850 hypothetical protein; Provisional
Probab=26.35 E-value=4.2e+02 Score=24.33 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=20.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHh
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENY 49 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la 49 (217)
.+.++|++.|...|..++..+....
T Consensus 34 ~~P~vV~fSGGKDStavL~Lv~~Al 58 (507)
T PRK06850 34 NRPWVIGYSGGKDSTAVLQLVWNAL 58 (507)
T ss_pred CCCeEEeCCCCchHHHHHHHHHHHH
Confidence 4568999999999999988776543
No 326
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.33 E-value=3.5e+02 Score=21.85 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=36.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|..+......+.+... ..++.+...++|-||+.... .... -... +.+....+||+++-.
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~--~~~~--------~~~i-~~~~~~~iPvV~~~~ 89 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVD--PVST--------AAAY-KKVAEAGIKLVFMDN 89 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCC--chhh--------hHHH-HHHHHcCCcEEEecC
Confidence 334455567776533223234432 34445556789999886443 1111 1122 345567899999854
No 327
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.32 E-value=1.2e+02 Score=27.81 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=11.1
Q ss_pred HHHHhCCCCCeEEEEEEE
Q 027929 45 AVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 45 A~~la~~~~~~l~lvhV~ 62 (217)
|.+.+.....-+.++|.-
T Consensus 16 a~~~a~~i~~~~~i~H~p 33 (513)
T CHL00076 16 TLRVASSFKNVHAIMHAP 33 (513)
T ss_pred HHHHHHhcCCcEEEeeCC
Confidence 344455556677788873
No 328
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=26.16 E-value=1.3e+02 Score=27.29 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCCCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPDDS 189 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~~~ 189 (217)
.++...++.+++.++..||+-+++ |.++..+.+. .+||++++-+..+.
T Consensus 362 aia~sAv~~A~~l~akaIVv~T~S--------------G~TA~~lS~~RP~~pIiavT~~~~~ 410 (480)
T cd00288 362 AVAMSAVRAAFELGAKAIVVLTTS--------------GRTARLVSKYRPNAPIIAVTRNEQT 410 (480)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEcCCHHH
Confidence 356677788888999999998876 6677777776 45999988665443
No 329
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.13 E-value=3.1e+02 Score=21.59 Aligned_cols=67 Identities=9% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHhhhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+.+.+.+...|+.+......+ +. ...+++.+...++|-||+.... .... ....+ .++...+||+.+
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~vdgiii~~~~--~~~~--------~~~~~-~~~~~~ipvV~~ 86 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIANQ-DLNKQLSDVEDFITKKVDAIVLSPVD--SKGI--------RAAIA-KAKKAGIPVITV 86 (267)
T ss_pred HHHHHHHHhcCCEEEEecCCC-CHHHHHHHHHHHHHcCCCEEEEcCCC--hhhh--------HHHHH-HHHHCCCCEEEE
Confidence 334444555677765543332 33 3345566667899999996443 1111 11122 345577999998
Q ss_pred e
Q 027929 184 R 184 (217)
Q Consensus 184 ~ 184 (217)
-
T Consensus 87 ~ 87 (267)
T cd06322 87 D 87 (267)
T ss_pred c
Confidence 4
No 330
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=25.83 E-value=4.2e+02 Score=23.81 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=52.9
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
..+.+++.++..|.+|.+......+....|-++++....|-|++-..+ ...+.. --..+....+|++-++
T Consensus 54 AMR~Fad~LraeG~~V~Y~~~~~~~~~~~l~~~l~~~~~d~~~~~~p~--~~~l~~--------~m~~L~~~~g~~i~~~ 123 (505)
T COG3046 54 AMRHFADELRAEGLKVRYERADDNSFGGELRRALEAYPGDRVQVQEPG--DHRLEA--------RMKSLSMALGIEITEV 123 (505)
T ss_pred HHHHHHHHHhhCCceeEEEEcCCcccchHHHHHHHhcCCCeEEEecCc--chhHHH--------HHHhhhhhcCceeEEe
Confidence 344567778889999999998886778889999999999999998877 443332 2233444566777666
Q ss_pred eCC
Q 027929 184 RYP 186 (217)
Q Consensus 184 ~~~ 186 (217)
...
T Consensus 124 ~~~ 126 (505)
T COG3046 124 ENP 126 (505)
T ss_pred cCc
Confidence 554
No 331
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.63 E-value=4.3e+02 Score=22.64 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhhhhcCc
Q 027929 38 SAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPLEEAGL 117 (217)
Q Consensus 38 s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 117 (217)
-...+..|+..|++.|..-+=||.-...... -+.....+...+++-..++ ....+..+..+++.+.+...
T Consensus 150 ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~-------qFlSp~~N~R~D~yGGsle-nR~rf~~eii~air~~vg~d-- 219 (338)
T cd02933 150 IVADFRQAARNAIEAGFDGVEIHGANGYLID-------QFLRDGSNKRTDEYGGSIE-NRARFLLEVVDAVAEAIGAD-- 219 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccchhHH-------HhcCCccCCCCCcCCCcHH-HhhhHHHHHHHHHHHHhCCC--
Confidence 3445666777887767655555543211100 0001111223333444433 33355555556655544321
Q ss_pred eEEEEEee---------cCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 118 QYKIHIVK---------DHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 118 ~v~~~v~~---------g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+.+++-. |.+.. ..|++.+++.++|+|-+.... ....... +.-..+..+-++.++||+++-.
T Consensus 220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~--~~~~~~~---~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR--VAGNPED---QPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC--CCCcccc---cchHHHHHHHHHcCCCEEEECC
Confidence 23333321 11222 257777777789999883322 1111111 3334555666678899999854
No 332
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=25.62 E-value=1.3e+02 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 38 SAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 38 s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...-+...+|+.....+-++|||--
T Consensus 20 ~fc~~~~~~wl~~~I~Da~~lVhGp 44 (457)
T CHL00073 20 TFCPISCVAWLYQKIEDSFFLVIGT 44 (457)
T ss_pred ccCCcceEeeecccccceeEEeecc
Confidence 3334455678888888888888864
No 333
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=25.52 E-value=3.5e+02 Score=22.95 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=35.7
Q ss_pred hhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+++.|+.+.+..-...+..+ .+++.+...++|-||+.... ...+ .... +-++...+||+.+-..
T Consensus 49 a~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d--~~al--------~~~l-~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 49 GKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVS--PDGL--------CPAL-KRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHH--------HHHH-HHHHHCCCeEEEeCCC
Confidence 33457776542222223333 45666667899999996433 1111 1222 2355678999998543
No 334
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=25.42 E-value=3.3e+02 Score=21.31 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCc-cc-ccCCccccchhHHHhcCCCccEEEEe
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGA-VR-RSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~-~~-~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
-...+++.+++.++|.|.+-.+. ... .. .. .+ .....+.+..++||+..-
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~--~~~~~~~~~---~~-~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRT--REQRYSGPA---DW-DYIAEIKEAVSIPVIANG 190 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--HHHcCCCCC---CH-HHHHHHHhCCCCeEEEeC
Confidence 35567777888899999886553 211 11 11 12 233456667789988864
No 335
>PRK00211 sulfur relay protein TusC; Validated
Probab=25.40 E-value=2.3e+02 Score=20.26 Aligned_cols=38 Identities=5% Similarity=0.089 Sum_probs=26.3
Q ss_pred CcEEEEEecCC----hhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 25 QRKIAIAVDLS----DESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 25 ~~~IlVavD~s----~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
+++|++-+..+ ..+..+++.|+..+.. +.+|.++..-+
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~-~~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAF-TEDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcc-cCCeeEEEEhh
Confidence 46788888755 4677788888876644 44777777643
No 336
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=25.39 E-value=1.5e+02 Score=24.63 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=40.7
Q ss_pred cCceEEEEEeecCChHHH-HHHHHHHcCCCEEEEecCCCCCCcccccCCccccchh----------HHHhcCCCccEEEE
Q 027929 115 AGLQYKIHIVKDHDMKER-LCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVS----------DYCVHHCVCPVVVL 183 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~-I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s----------~~ll~~a~~PVlvv 183 (217)
.| +.+..++.|.+++.+ .++.|.+...+.+|+-+.= .+ ..+. +...+- ..=+++.+||||++
T Consensus 126 ~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf--~S-~~rv---~~~~~~~~~~~d~f~~i~kI~~i~~PVLii 198 (258)
T KOG1552|consen 126 YG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPF--TS-GMRV---AFPDTKTTYCFDAFPNIEKISKITCPVLII 198 (258)
T ss_pred cC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccc--hh-hhhh---hccCcceEEeeccccccCcceeccCCEEEE
Confidence 45 778888888555544 4677777778999988653 22 2232 221000 23356678999999
Q ss_pred eCCC
Q 027929 184 RYPD 187 (217)
Q Consensus 184 ~~~~ 187 (217)
...+
T Consensus 199 Hgtd 202 (258)
T KOG1552|consen 199 HGTD 202 (258)
T ss_pred eccc
Confidence 8543
No 337
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=25.39 E-value=1.5e+02 Score=21.39 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=22.7
Q ss_pred EEEEecCChh-----HHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 28 IAIAVDLSDE-----SAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 28 IlVavD~s~~-----s~~al~~A~~la~~~~~~l~lvhV 61 (217)
|+|++|.|-+ -.+.+.-...+++..+.+|+++++
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~ 39 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQF 39 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5788887742 233455556677777888888875
No 338
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=25.20 E-value=3.5e+02 Score=21.41 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=28.3
Q ss_pred CceEEEEEeecC-Ch--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 116 GLQYKIHIVKDH-DM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 116 ~v~v~~~v~~g~-~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
|..++..+.... +. ....++.+...++|-||+.... ...+. ... ..++...+||+++-.
T Consensus 32 g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~--~~~~~--------~~l-~~~~~~~iPvv~~~~ 93 (272)
T cd06300 32 GLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPAS--PTALN--------PVI-EEACEAGIPVVSFDG 93 (272)
T ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hhhhH--------HHH-HHHHHCCCeEEEEec
Confidence 654455554331 22 2234444445678888876543 21111 111 234456777777743
No 339
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.16 E-value=3.2e+02 Score=21.04 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=32.7
Q ss_pred hhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+...|+.+...-..+ +. ....++.+...++|.||+.... ... . . .-..+....+|++.+...
T Consensus 25 ~~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~ii~~~~~--~~~---~------~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 25 AKAAGYQVLLANSQN-DAEKQLSALENLIARGVDGIIIAPSD--LTA---P------T-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHcCCeEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--Ccc---h------h-HHHHhhhcCCCEEEeccC
Confidence 333566554333332 22 2344444555688988887543 110 1 1 234556778888887543
No 340
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=25.10 E-value=4.3e+02 Score=22.47 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=35.3
Q ss_pred HhhhhhhcCceEEEEEeecCC------hHHHHHHHHHHcCC---CEEE-EecCCCCCCcccccCCccccchhHHHh--cC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHD------MKERLCLEVERLGL---SAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCV--HH 175 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~------~~~~I~~~a~~~~~---dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll--~~ 175 (217)
+.+.+...|+.+...+..+.. ..+.+++.+++.++ |+|| +|..+ . ..++..+. ..
T Consensus 39 v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGs-----v--------~D~aK~iA~~~~ 105 (344)
T TIGR01357 39 LLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGV-----V--------GDLAGFVAATYM 105 (344)
T ss_pred HHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChH-----H--------HHHHHHHHHHHc
Confidence 334444457766554444311 25567777777776 6555 55332 1 22222222 23
Q ss_pred CCccEEEEeCC
Q 027929 176 CVCPVVVLRYP 186 (217)
Q Consensus 176 a~~PVlvv~~~ 186 (217)
..+|++.||-.
T Consensus 106 ~~~p~i~VPTT 116 (344)
T TIGR01357 106 RGIRFIQVPTT 116 (344)
T ss_pred cCCCEEEecCc
Confidence 46899999864
No 341
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=25.09 E-value=69 Score=28.50 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 027929 130 KERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+.|+++|++.++||+|+|.-
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCc
Confidence 678999999999999999964
No 342
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=24.95 E-value=2.3e+02 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+.+++.+++.++|.|| +|... .+.++..+.....+|++.||-..
T Consensus 76 v~~~~~~~~~~~~d~IIaiGGGs-------------v~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLIGVGGGK-------------VIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHhhccCCCEEEEeCCch-------------HHHHHHHHHHhcCCCEEEeCCCc
Confidence 44677777788899877 55322 24455555555678999998653
No 343
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=24.93 E-value=5.2e+02 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=28.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
-+...++++.+.|.-+|--|+-++.. .|.+|.+||+.
T Consensus 174 ~g~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~ 210 (482)
T PRK01269 174 LGTQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFN 210 (482)
T ss_pred ccccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEe
Confidence 45567999999999888877654433 47899999995
No 344
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.89 E-value=95 Score=26.10 Aligned_cols=50 Identities=8% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCE-----EEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 130 KERLCLEVERLGLSA-----MIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 130 ~~~I~~~a~~~~~dl-----IVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
..++++..+.+++++ +|+|++. ++|.-...++.+..+.|.+++...++-.
T Consensus 141 p~avi~lL~~~~i~l~Gk~vvVvGrS~------------iVGkPla~lL~~~~atVtichs~T~~l~ 195 (284)
T PRK14170 141 PAGIIELIKSTGTQIEGKRAVVIGRSN------------IVGKPVAQLLLNENATVTIAHSRTKDLP 195 (284)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCC------------cchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence 678888888876655 8888665 4565556677677899999987665433
No 345
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=24.83 E-value=4.3e+02 Score=22.40 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=37.9
Q ss_pred CceEEEEEeecCC----hHHHHHHHHHHcCCCEEEEecCCCCCCc-ccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 116 GLQYKIHIVKDHD----MKERLCLEVERLGLSAMIMGGRGIGIGA-VRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 116 ~v~v~~~v~~g~~----~~~~I~~~a~~~~~dlIVlG~~~~~~~~-~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
++.+..++..|-+ -...+++.+++.++|.|.+-.+. +.. ..+. . .+ ....++.++.++||+..-+
T Consensus 133 d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt--~~~~~~G~-a-~~-~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT--RACLFNGE-A-EY-DSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCc--cccccCCC-c-Ch-HHHHHHHHhcCCcEEEeCC
Confidence 4556666655522 13467777888899999887654 221 1111 0 11 2445666667888887654
No 346
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.56 E-value=2.6e+02 Score=19.71 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCC-EEEEecC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLS-AMIMGGR 150 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~d-lIVlG~~ 150 (217)
.+.++++.++..|+.++.... . . ....+++|...++. +||+|..
T Consensus 43 ~a~~la~~LR~~gi~v~~d~~-~-s-l~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 43 IAKEISEELRELGFSVKYDDS-G-S-IGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHHHHHCCCEEEEeCC-C-C-HHHHHHHhHhcCCCEEEEECcC
Confidence 344566667778998888766 4 4 55677788888888 5555744
No 347
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=24.49 E-value=2.4e+02 Score=23.71 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=26.7
Q ss_pred CCcEEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 24 AQRKIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 24 ~~~~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
..+.|.+|+ |++ .++-.+.-++.+|.-++.+| |+|++
T Consensus 121 ~~~~v~v~~~GDga-~~qG~~~EalN~A~~~~lPv--ifvve 159 (300)
T PF00676_consen 121 GKDGVVVCFFGDGA-TSQGDFHEALNLAALWKLPV--IFVVE 159 (300)
T ss_dssp TSSEEEEEEEETGG-GGSHHHHHHHHHHHHTTTSE--EEEEE
T ss_pred CCceeEEEEecCcc-cccCccHHHHHHHhhccCCe--EEEEe
Confidence 455777777 444 67777888899998899998 44444
No 348
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.44 E-value=97 Score=26.11 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
...++++..+.++++ .+|+|++. ++|.-...++.+..+.|.+++...++-
T Consensus 147 Tp~av~~ll~~~~i~l~Gk~vvViGrs~------------iVGkPla~lL~~~~atVtv~hs~T~~l 201 (287)
T PRK14176 147 TPHGVIRALEEYGVDIEGKNAVIVGHSN------------VVGKPMAAMLLNRNATVSVCHVFTDDL 201 (287)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCCc------------ccHHHHHHHHHHCCCEEEEEeccCCCH
Confidence 367888888887654 58888665 456666667777788999988655443
No 349
>PRK03670 competence damage-inducible protein A; Provisional
Probab=24.36 E-value=4e+02 Score=21.87 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=25.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMG 148 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG 148 (217)
+.+.+...|+.+....+.+++ .+.|.+..++ ..+|+||+.
T Consensus 25 la~~L~~~G~~v~~~~iV~Dd-~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 25 IAQKLTEKGYWVRRITTVGDD-VEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred HHHHHHHCCCEEEEEEEcCCC-HHHHHHHHHHHhhCCCCEEEEC
Confidence 444456679998877776745 5556666543 247888876
No 350
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=24.36 E-value=3.5e+02 Score=21.35 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=32.5
Q ss_pred cCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 115 AGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.|+.+.+....+ +.. ..+++.+...++|-||+.... .... ... -..+...++||+++-.
T Consensus 29 ~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~--~~~~--------~~~-~~~l~~~~iPvv~~~~ 89 (272)
T cd06301 29 GGVELQFEDAKN-DVATQLSQVENFIAQGVDAIIVVPVD--TAAT--------API-VKAANAAGIPLVYVNR 89 (272)
T ss_pred CCcEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEecCc--hhhh--------HHH-HHHHHHCCCeEEEecC
Confidence 466554432222 332 244555566799999987543 1111 112 2345778899998854
No 351
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=24.33 E-value=3.6e+02 Score=21.35 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
..+.+.+.+++.|+.+...-..+ +. ...+++.+...++|-||+.... .... ...-..+.....||+
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~---------~~~i~~~~~~~iPvV 84 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQ-KQENQISAIRSFIAQGVDVIILAPVV--ETGW---------DPVLKEAKAAGIPVI 84 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCc--cccc---------hHHHHHHHHCCCCEE
Confidence 33444555556677766543332 33 2245666667889999986543 1111 111134556789999
Q ss_pred EEeC
Q 027929 182 VLRY 185 (217)
Q Consensus 182 vv~~ 185 (217)
++-.
T Consensus 85 ~~~~ 88 (273)
T cd06309 85 LVDR 88 (273)
T ss_pred EEec
Confidence 9864
No 352
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=24.22 E-value=2.5e+02 Score=21.62 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=39.7
Q ss_pred EEEEEeecCC-----hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccc---cchhHHHhcCCCccEEEEe
Q 027929 119 YKIHIVKDHD-----MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRL---GSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 119 v~~~v~~g~~-----~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~---gS~s~~ll~~a~~PVlvv~ 184 (217)
++.-+.+|+. -...+...+++.++|+||-|-.. ..........++ ||.+...-. .+|...++-
T Consensus 82 ~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH--~p~~~~~~~i~~vNPGS~s~pr~~-~~~sy~il~ 152 (172)
T COG0622 82 VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTH--KPVAEKVGGILLVNPGSVSGPRGG-NPASYAILD 152 (172)
T ss_pred EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCC--cccEEEECCEEEEcCCCcCCCCCC-CCcEEEEEE
Confidence 4556677731 26678888999999999999665 444433311122 888765444 555565554
No 353
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.19 E-value=1.3e+02 Score=21.03 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeC
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQT 64 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~ 64 (217)
......+++++..+..+...+++ ++.|++.+.+++++.-.+.
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~-~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNL-LPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHH-HHHHHHCCCeEEEEeCCCC
Confidence 34567899999999888888885 5557777888888877543
No 354
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.05 E-value=1.3e+02 Score=23.26 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+-+....||+++..|.+|...++ |++.|+..+..++.+.-.
T Consensus 105 A~g~~GDvLigISTSGNS~nVl~-Ai~~Ak~~gm~vI~ltG~ 145 (176)
T COG0279 105 ALGQPGDVLIGISTSGNSKNVLK-AIEAAKEKGMTVIALTGK 145 (176)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHH-HHHHHHHcCCEEEEEecC
Confidence 45677899999999999999998 688898888888877664
No 355
>PRK09271 flavodoxin; Provisional
Probab=23.94 E-value=1.2e+02 Score=22.80 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.+++.+...|+.++..-....++.+... .-.++|+||+|+..
T Consensus 17 ~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~---~~~~~d~vilgt~T 61 (160)
T PRK09271 17 VAREIEERCEEAGHEVDWVETDVQTLAEYPL---DPEDYDLYLLGTWT 61 (160)
T ss_pred HHHHHHHHHHhCCCeeEEEeccccccccccc---CcccCCEEEEECcc
Confidence 3444555555567765533322212111111 12368999999854
No 356
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=23.91 E-value=3.2e+02 Score=23.85 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=37.6
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+...|+ ....+..|..-.+.+-+.+.. .++|.| +|-.| +. . =.++..+.....+|++.||
T Consensus 49 ~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~v-IGVGG-------Gk---~-iD~aK~~A~~~~~pfIsvP 115 (360)
T COG0371 49 VEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVV-IGVGG-------GK---T-IDTAKAAAYRLGLPFISVP 115 (360)
T ss_pred HHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEE-EEecC-------cH---H-HHHHHHHHHHcCCCEEEec
Confidence 4444555677 334444443334444444443 456654 44333 11 1 2688899999999999997
Q ss_pred C
Q 027929 185 Y 185 (217)
Q Consensus 185 ~ 185 (217)
-
T Consensus 116 T 116 (360)
T COG0371 116 T 116 (360)
T ss_pred C
Confidence 4
No 357
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.78 E-value=1.6e+02 Score=20.80 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
....+.+++++..|..+...++ +++.|++.|.+++.+.-.+
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECCC
Confidence 3456789999999988888877 5777777888887776643
No 358
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=23.77 E-value=1.7e+02 Score=21.90 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC--CCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGI--GIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~--~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+..|.+.+++++++.||+|-.-. |....... ..-..++.|-++..+||.++-..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~---~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAE---LARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHH---HHHHHHHHHHHhcCCCEEEEcCc
Confidence 478899999999999999996530 01111111 22345566677788999888543
No 359
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=23.46 E-value=1.3e+02 Score=26.14 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=33.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCC-eEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGD-AVVLLHV 61 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~-~l~lvhV 61 (217)
.+.+|.|...|...|.-.|..++.++++.+. +|.++|.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 4568999999999999999999999998876 8877776
No 360
>PHA02546 47 endonuclease subunit; Provisional
Probab=23.43 E-value=2e+02 Score=24.62 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCCCEEEEec
Q 027929 129 MKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~ 149 (217)
..+.+++++++.++|+||++.
T Consensus 27 ~l~~ii~~a~~~~vD~VliaG 47 (340)
T PHA02546 27 FIKQAIEYSKAHGITTWIQLG 47 (340)
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 345566667677777777664
No 361
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=23.38 E-value=56 Score=22.17 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=33.5
Q ss_pred hhhcCceEEEEEeecCCh--HH---HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 112 LEEAGLQYKIHIVKDHDM--KE---RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~--~~---~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
+.+.|+.+...+..-+.. .. .+.+..++.++|+||.-..+ ...... --|-.-++++-...+|++
T Consensus 26 L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~--~~~~~~----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 26 LKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP--FSDQEH----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T--HHHHHT----HHHHHHHHHHHHTTSHEE
T ss_pred HHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC--Cccccc----CCcHHHHHHHHHcCCCCc
Confidence 345688744333222122 22 39999999999999988665 222211 024455556656666654
No 362
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=23.36 E-value=4.7e+02 Score=26.66 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
...+|.|++|+==|---.+-|++ |+..|...|-.|.++ | |+. -.
T Consensus 612 ~~kpMDRLiCGDVGFGKTEVAmR-AAFkAV~~GKQVAvL-V-PTT---------------------------------lL 655 (1139)
T COG1197 612 SGKPMDRLICGDVGFGKTEVAMR-AAFKAVMDGKQVAVL-V-PTT---------------------------------LL 655 (1139)
T ss_pred cCCcchheeecCcCCcHHHHHHH-HHHHHhcCCCeEEEE-c-ccH---------------------------------Hh
Confidence 34566666655334445555666 566666666555543 2 221 11
Q ss_pred HHHHHHHHhhhhhhcCceEEEEEeec-CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 101 TATNAKNIAEPLEEAGLQYKIHIVKD-HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~v~~~v~~g-~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+.+.+.++|..++++|+...+.- ..-...+++..++..+|+ |+|+|.
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDI-vIGTHr 706 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDI-VIGTHR 706 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccE-EEechH
Confidence 22344556666776777766655443 234567888888999995 568875
No 363
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.35 E-value=3.7e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=17.1
Q ss_pred hcCceEEEEEeecCC--hHHHHHHHHHHcCCCEEEEe
Q 027929 114 EAGLQYKIHIVKDHD--MKERLCLEVERLGLSAMIMG 148 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~--~~~~I~~~a~~~~~dlIVlG 148 (217)
..|..+......+.+ ....+.+.....++|-||+-
T Consensus 27 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 63 (270)
T cd01545 27 DTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILT 63 (270)
T ss_pred hCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEe
Confidence 345555444333221 23345555555667766654
No 364
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.31 E-value=2.6e+02 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=27.9
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++..|.++ ..+--.-+.+.+++.+.+.++|+|.+....
T Consensus 27 lr~~G~eV--i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~ 64 (137)
T PRK02261 27 LTEAGFEV--INLGVMTSQEEFIDAAIETDADAILVSSLY 64 (137)
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCcc
Confidence 44457654 333334568999999999999999998765
No 365
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=23.29 E-value=1.3e+02 Score=25.91 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=10.8
Q ss_pred CcEEEEEecCChhHHHHHH
Q 027929 25 QRKIAIAVDLSDESAYAVR 43 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~ 43 (217)
.+..++.+.+...|..-..
T Consensus 19 i~~~~~i~hgp~GC~~~~~ 37 (399)
T cd00316 19 IKDAIPLVHGPQGCAYFTR 37 (399)
T ss_pred cccceeeccCchhhhHHHH
Confidence 3566666666666655443
No 366
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.08 E-value=5.6e+02 Score=23.05 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=20.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
-.+|+..|+--+.-+...|..+. ..+..|.++..
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~a 277 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITT 277 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEec
Confidence 34555666666666677777665 34556665554
No 367
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.04 E-value=1.2e+02 Score=23.90 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=34.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeC
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQT 64 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~ 64 (217)
.....+++++..|-.+...++ +++.|+..|.+++.+.-.+.
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~-a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCC
Confidence 567899999999988888666 78999999999999887544
No 368
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.03 E-value=2.2e+02 Score=18.35 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=28.4
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCE-EEEecC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSA-MIMGGR 150 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dl-IVlG~~ 150 (217)
+.++++.++..|+.++..... .. ...-+++|...++.+ |++|..
T Consensus 17 a~~~~~~Lr~~g~~v~~d~~~-~~-~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 17 AKEVAKKLSDAGIRVEVDLRN-EK-LGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHHHCCCEEEEECCC-CC-HHHHHHHHHHcCCCEEEEECcc
Confidence 334556666678888776653 34 556777788888884 555643
No 369
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.93 E-value=1e+02 Score=26.02 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~ 193 (217)
...++++..+.++++ .+|+|++. ++|.-...++.+..+.|.+++...++-...
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~------------iVGkPla~lL~~~~aTVt~chs~T~~l~~~ 200 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSN------------IVGKPMACLLLGENCTVTTVHSATRDLADY 200 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCc------------cchHHHHHHHhhCCCEEEEeCCCCCCHHHH
Confidence 367888888877654 58888665 556666667777789999998766554433
No 370
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.90 E-value=1.4e+02 Score=22.67 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=33.2
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeC
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQT 64 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~ 64 (217)
....+.++|+++.+......++. ++.|++.|++++++.-.+.
T Consensus 69 ~~~~~Dv~I~iS~sG~t~~~i~~-~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 69 SIKKGDLLIAISGSGETESLVTV-AKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCCCEEEEEeCCCCcHHHHHH-HHHHHHCCCeEEEEECCCC
Confidence 45567899999999888888884 6667888999988876543
No 371
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=22.86 E-value=1.9e+02 Score=19.73 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+.++..|+.+.........+...|-. ..-.++|+||+-...
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~~l~~-~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIENELTA-EDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccCcCCH-HHHhhCCEEEEecCC
Confidence 34455666788887776665433444432 223479999998765
No 372
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=22.84 E-value=3.3e+02 Score=20.29 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCC---hHHHHHHHHHHcCCCEEEEe
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHD---MKERLCLEVERLGLSAMIMG 148 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~---~~~~I~~~a~~~~~dlIVlG 148 (217)
..+..+.+.+.+.|++ +.+....+ ....-+..+...++|++|-=
T Consensus 28 ~ia~~l~~~L~~~g~~--V~~tr~~d~~~~l~~R~~~an~~~ad~~isi 74 (175)
T PF01520_consen 28 DIALRLKKELEKHGIK--VYLTRDNDSDVSLQERAALANSWGADLFISI 74 (175)
T ss_dssp HHHHHHHHHHHHTTEE--EEESSSSSHCCCHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHhcCCcE--EEEeCCCCCCCCHHHHHHHHHhcccCEEEEE
Confidence 4455566667777844 44444333 36778888889999998853
No 373
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.79 E-value=4.3e+02 Score=21.62 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+++.+...++|-||+.... ...+ .... +-+....+||+++-.
T Consensus 48 ~~i~~l~~~~vdgiii~~~~--~~~~--------~~~~-~~~~~~giPvV~~~~ 90 (303)
T cd01539 48 EQIDTALAKGVDLLAVNLVD--PTAA--------QTVI-NKAKQKNIPVIFFNR 90 (303)
T ss_pred HHHHHHHHcCCCEEEEecCc--hhhH--------HHHH-HHHHHCCCCEEEeCC
Confidence 45666667899988886443 1111 1122 345667899998843
No 374
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.79 E-value=4.2e+02 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=25.0
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEec
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
+.+.+.++.+...+ +..-...+++.+.+.++|+|++..
T Consensus 125 ~~~~~~~V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 125 AEIRDAGVIVAVSL--SPQRAQELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred HHHHhCeEEEEEec--CCcCHHHHHHHHHHCCCCEEEEec
Confidence 33444456654444 322366888888899999999954
No 375
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.78 E-value=2.7e+02 Score=19.35 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=37.7
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHH-cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVER-LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~-~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
..|+.++........-...|.+..++ .++|+||--..+ ...-... --|..-++......+|++.
T Consensus 40 ~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~--~~~~~~~---~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 40 DAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDP--RRDRCTD---EDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCC--CcccccC---CChHHHHHHHHHcCCCEEE
Confidence 35887765543211012568888889 899999986554 3211111 2255556666666788764
No 376
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=22.74 E-value=2.3e+02 Score=23.26 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=33.2
Q ss_pred HHhhhhhhcCceEEEEE-eecCChHHHH---HHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 107 NIAEPLEEAGLQYKIHI-VKDHDMKERL---CLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v-~~g~~~~~~I---~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++.+.++..|+++.... ..+..-.+.+ .+.++..++|+||--..| -+-.++.++..+..+|.+.
T Consensus 37 ~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG------------~i~D~~K~~A~~~~~p~is 104 (250)
T PF13685_consen 37 KVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGG------------TIIDIAKYAAFELGIPFIS 104 (250)
T ss_dssp HHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESH------------HHHHHHHHHHHHHT--EEE
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCc------------HHHHHHHHHHHhcCCCEEE
Confidence 34444555688777443 1221123333 334444577765543333 2246788899999999999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
||-.
T Consensus 105 VPTa 108 (250)
T PF13685_consen 105 VPTA 108 (250)
T ss_dssp EES-
T ss_pred eccc
Confidence 9853
No 377
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.61 E-value=1.7e+02 Score=23.83 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=4.1
Q ss_pred EEEEEeec
Q 027929 119 YKIHIVKD 126 (217)
Q Consensus 119 v~~~v~~g 126 (217)
+...++.|
T Consensus 40 ~D~lli~G 47 (253)
T TIGR00619 40 IDALLVAG 47 (253)
T ss_pred CCEEEECC
Confidence 44455555
No 378
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.42 E-value=3.9e+02 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=7.9
Q ss_pred HHHHHHHcCCCEEEEec
Q 027929 133 LCLEVERLGLSAMIMGG 149 (217)
Q Consensus 133 I~~~a~~~~~dlIVlG~ 149 (217)
+.+.+++.++-+|++++
T Consensus 71 ~~~~~~~~~ipvV~i~~ 87 (269)
T cd06281 71 LVDALASLDLPIVLLDR 87 (269)
T ss_pred HHHHHHhCCCCEEEEec
Confidence 44444444455555543
No 379
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=22.40 E-value=1.9e+02 Score=19.38 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=26.8
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.|.+...+.|+.+.+++.-...+...|.... -..+|+||+..-.
T Consensus 19 ~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~-i~~Ad~viia~d~ 62 (85)
T TIGR00829 19 ALEKAAKKRGWEVKVETQGSVGAQNALTAED-IAAADGVILAADR 62 (85)
T ss_pred HHHHHHHHCCCeEEEEecCCcCccCCCCHHH-HHhCCEEEEeccC
Confidence 3445556678888777766543444443332 2368999988664
No 380
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=22.36 E-value=3.8e+02 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.7
Q ss_pred HHHHHHHcCCCEEEEe
Q 027929 133 LCLEVERLGLSAMIMG 148 (217)
Q Consensus 133 I~~~a~~~~~dlIVlG 148 (217)
+++.+...++|-||+.
T Consensus 47 ~~~~l~~~~vdgiii~ 62 (266)
T cd06282 47 AVETLLRQRVDGLILT 62 (266)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 3444444566666664
No 381
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.35 E-value=1.1e+02 Score=25.71 Aligned_cols=51 Identities=8% Similarity=0.129 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCC-----CEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 129 MKERLCLEVERLGL-----SAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 129 ~~~~I~~~a~~~~~-----dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
...++++..+.+++ ..+|+|++. ++|--...++....+.|.+++...++-.
T Consensus 141 Tp~av~~lL~~~~i~l~Gk~vvViGrS~------------~VGkPla~lL~~~~AtVt~chs~T~~l~ 196 (278)
T PRK14172 141 TPNSVITLIKSLNIDIEGKEVVVIGRSN------------IVGKPVAQLLLNENATVTICHSKTKNLK 196 (278)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCc------------cchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence 36788888888765 458888665 5566566677777899999986655433
No 382
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=22.35 E-value=3.8e+02 Score=20.90 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEEec----CCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGG----RGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~----~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
.+.++..++...+|+|+|.- .. .+ + . ...+.+.+..+ ++|+++-..
T Consensus 36 ~~~~~~~~~~~~pDlvLlDl~~~l~~--~~---g-----~-~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 36 VDDLAIACDSLRPSVVFINEDCFIHD--AS---N-----S-QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHhccCCCEEEEeCcccCCC--CC---h-----H-HHHHHHHHHCCCCeEEEEECC
Confidence 55566777778899999993 22 11 1 1 25666766554 899988543
No 383
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=22.21 E-value=1.6e+02 Score=26.12 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=27.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
++|++|.|+......|...++..+...+..+.++
T Consensus 301 ~~vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~ 334 (415)
T TIGR01391 301 DEIILCFDGDKAGRKAALRAIELLLPLGINVKVI 334 (415)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5899999999999999888888887777655544
No 384
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=22.17 E-value=4.1e+02 Score=21.20 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=34.1
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRY 185 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~ 185 (217)
.+.+.+++.|+.+.........-...+++.....++|-||+-... .. .....+++. ...|++++-.
T Consensus 23 gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~~--~~-----------~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 23 GLERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGFL--LA-----------DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCcc--hH-----------HHHHHHHHHCCCCEEEEEec
Confidence 344444556776544322211123345666667889999885432 11 112234444 3678888843
No 385
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.10 E-value=1.6e+02 Score=26.00 Aligned_cols=20 Identities=10% Similarity=-0.223 Sum_probs=13.4
Q ss_pred CCCCCcEEEEEecCChhHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAY 40 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~ 40 (217)
.....+..++-+.++..|..
T Consensus 16 ~~~~I~~~~~i~Hgp~GC~~ 35 (428)
T cd01965 16 AFLGIEGCMPLVHGSQGCSS 35 (428)
T ss_pred HHccccCceeecCCchhhHH
Confidence 34556677777777777754
No 386
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=22.06 E-value=3.6e+02 Score=20.52 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=24.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH--cCCCEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER--LGLSAMIMG 148 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~--~~~dlIVlG 148 (217)
+.+.+...|+++.....-+++ .+.|.+..++ ..+|+||..
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDD-EDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEEC
Confidence 334455578888776666645 3344444432 368988876
No 387
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.92 E-value=1.7e+02 Score=26.11 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
..+++|.+.+++.++|.+||-+.= +.=.| .|++..+-+.++.+||+.+-.-
T Consensus 323 ~~g~eIa~~Lk~dgVDAvILtstC---gtCtr-----cga~m~keiE~~GIPvV~i~~~ 373 (431)
T TIGR01917 323 QFAKEFSKELLAAGVDAVILTSTU---GTCTR-----CGATMVKEIERAGIPVVHICTV 373 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCC---Ccchh-----HHHHHHHHHHHcCCCEEEEeec
Confidence 357789999999999999998651 22222 3778888889999999988543
No 388
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.88 E-value=1.3e+02 Score=22.86 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
...+.++|.+..|..+...++ +++.|++.|.+++.+.-..
T Consensus 99 ~~~~Dv~I~iS~SG~t~~~i~-~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 99 GQPGDVLIGISTSGNSPNVLK-ALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCC
Confidence 466789999999999988888 5777788899888887653
No 389
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=21.87 E-value=5e+02 Score=22.12 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=35.6
Q ss_pred HhhhhhhcCceEEEEEeecC---Ch---HHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 108 IAEPLEEAGLQYKIHIVKDH---DM---KERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~---~~---~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
+.+.+...++.+........ .. .+.+++.+++ ++|.|| +|..+ ...++..+.-...+|+
T Consensus 42 v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs-------------~~D~aK~vA~~~~~p~ 107 (348)
T cd08175 42 VEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGT-------------INDITKYVSYKTGIPY 107 (348)
T ss_pred HHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcH-------------HHHHHHHHHHhcCCCE
Confidence 34444556776654432221 22 3345555655 899887 55332 1234444444457899
Q ss_pred EEEeCC
Q 027929 181 VVLRYP 186 (217)
Q Consensus 181 lvv~~~ 186 (217)
+.||-.
T Consensus 108 i~IPTT 113 (348)
T cd08175 108 ISVPTA 113 (348)
T ss_pred EEecCc
Confidence 999865
No 390
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.87 E-value=1.2e+02 Score=25.51 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
...++++..+.++++ .+|+|++. ++|.-...++....+.|.+++...++-+
T Consensus 142 Tp~av~~ll~~~~i~l~Gk~vvViGrs~------------iVG~Pla~lL~~~~atVtv~hs~T~~l~ 197 (285)
T PRK10792 142 TPRGIMTLLERYGIDTYGLNAVVVGASN------------IVGRPMSLELLLAGCTVTVCHRFTKNLR 197 (285)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCc------------ccHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 367888888887655 68888665 5566666777777899999986655433
No 391
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=21.81 E-value=3.9e+02 Score=20.81 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHhhhhhhcCceEEEEEeecCC---------------------hHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHD---------------------MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~---------------------~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+++.++..|.+++...+.+.+ -.+.|.+... ++|.||+|+.-
T Consensus 20 ~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~--~aD~iI~gsPv 85 (207)
T COG0655 20 AEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLL--EADGIIFGSPV 85 (207)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHH--HCCEEEEeCCe
Confidence 344455555568887777776531 1233333332 38999999874
No 392
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.78 E-value=2e+02 Score=22.15 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~ 193 (217)
.+.+..++.++|.||--..+ ++ .++ ..+..+..+|++++|+..+...+.
T Consensus 44 ~~~~~~~~~~id~Iv~iea~-------Gi---~~a---~~vA~~Lgvp~v~vRK~~kl~~~~ 92 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEAR-------GI---PLA---AAVALELGVPFVPVRKKGKLPEES 92 (179)
T ss_pred HHHHHhcccCCCEEEEEccc-------cc---hhH---HHHHHHhCCCEEEEEecCCCCCcc
Confidence 55666666678887766554 33 333 446667778888888866654443
No 393
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.77 E-value=3e+02 Score=19.42 Aligned_cols=41 Identities=39% Similarity=0.479 Sum_probs=22.9
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.+.+.+...|+.++..-+...+ ...+ .++|.||+|+.-
T Consensus 15 ~A~~i~~~~~~~g~~v~~~~~~~~~-~~~l------~~~d~iilgspt 55 (140)
T TIGR01753 15 MANIIAEGLKEAGAEVDLLEVADAD-AEDL------LSYDAVLLGCST 55 (140)
T ss_pred HHHHHHHHHHhcCCeEEEEEcccCC-HHHH------hcCCEEEEEcCC
Confidence 3444555555567766554443322 1222 358999999865
No 394
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.73 E-value=4.3e+02 Score=21.28 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+...|..+......+ +.. ..+++.+...++|-||+.... ..... ... ..+....+||+++-
T Consensus 20 gi~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiii~~~~--~~~~~--------~~l-~~l~~~~ipvV~~~ 87 (288)
T cd01538 20 NFEAALKELGAEVIVQNANG-DPAKQISQIENMIAKGVDVLVIAPVD--GEALA--------SAV-EKAADAGIPVIAYD 87 (288)
T ss_pred HHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--hhhHH--------HHH-HHHHHCCCCEEEEC
Confidence 34444555677765544433 332 355655667899999987543 11111 111 23455789999984
Q ss_pred C
Q 027929 185 Y 185 (217)
Q Consensus 185 ~ 185 (217)
.
T Consensus 88 ~ 88 (288)
T cd01538 88 R 88 (288)
T ss_pred C
Confidence 3
No 395
>smart00807 AKAP_110 A-kinase anchor protein 110 kDa. This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction PUBMED:10319321.
Probab=21.68 E-value=2.2e+02 Score=26.62 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=20.8
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCE
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSA 144 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dl 144 (217)
.+.++|..| | ++..++++|+++++.|=
T Consensus 807 ka~EKGwsV------G-DLLQaVlkY~KerQ~DE 833 (851)
T smart00807 807 KAVEKGYSV------G-EVLQSVLRYEKERQLDE 833 (851)
T ss_pred HHHHcCccH------H-HHHHHHHHHHHHhchhh
Confidence 344467776 5 89999999999887665
No 396
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.67 E-value=1.1e+02 Score=25.89 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQ 192 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~ 192 (217)
...++++..+.++++ .+|+|++. ++|.-...++....+.|.+++...++-..
T Consensus 141 Tp~aii~lL~~~~i~l~Gk~vvVIGrS~------------iVGkPla~lL~~~~atVtv~hs~T~~l~~ 197 (297)
T PRK14186 141 TPAGVMRLLRSQQIDIAGKKAVVVGRSI------------LVGKPLALMLLAANATVTIAHSRTQDLAS 197 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCc------------cchHHHHHHHHHCCCEEEEeCCCCCCHHH
Confidence 377899999887654 58888665 55665566777778899999776654333
No 397
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.61 E-value=3.1e+02 Score=19.61 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=20.6
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHH--cCCCEEEEe
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVER--LGLSAMIMG 148 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~--~~~dlIVlG 148 (217)
+.++..|.++....+..++ .+.|.+..++ .++|+||.-
T Consensus 25 ~~l~~~G~~~~~~~~v~Dd-~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 25 ELLTELGIEVTRYVIVPDD-KEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHCCCeEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEEc
Confidence 3345568776555444434 3444444332 358987775
No 398
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.51 E-value=2.9e+02 Score=23.92 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCEEE-EecCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~ 151 (217)
.+.+++.+++.++|.|| +|..+
T Consensus 72 v~~~~~~~~~~~~D~IiavGGGS 94 (380)
T cd08185 72 VMEGAALAREEGCDFVVGLGGGS 94 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc
Confidence 44566778888899888 66543
No 399
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=21.38 E-value=1.6e+02 Score=26.09 Aligned_cols=20 Identities=0% Similarity=-0.112 Sum_probs=9.0
Q ss_pred HHHHHHH-HcCCCEEEEecCC
Q 027929 132 RLCLEVE-RLGLSAMIMGGRG 151 (217)
Q Consensus 132 ~I~~~a~-~~~~dlIVlG~~~ 151 (217)
.+++.++ +.++.+|.+-+.+
T Consensus 106 ~v~~~~~~~~~~~vi~v~t~g 126 (430)
T cd01981 106 NFVRAAGLSSKSPVLPLDVNH 126 (430)
T ss_pred HHHHHhhhccCCCeEEecCCC
Confidence 3444333 3345555555444
No 400
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.36 E-value=1.2e+02 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=34.5
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.......++|+++.+......++ ++..|++.|++++.+.-.
T Consensus 173 ~~~~~~Dv~i~iS~sG~t~e~i~-~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 173 ALLTPGDVVIAISFSGYTREIVE-AAELAKERGAKVIAITDS 213 (281)
T ss_pred HhCCCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEcCC
Confidence 35567789999999999999998 578888889999888775
No 401
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.23 E-value=1.2e+02 Score=23.28 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 101 TATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.++.++..+.+.|+.|+.+=+.. +.+ ..-.++|.||+|+.-
T Consensus 14 T~kIA~~iA~~L~e~g~qvdi~dl~~------~~~-~~l~~ydavVIgAsI 57 (175)
T COG4635 14 TRKIAEYIASHLRESGIQVDIQDLHA------VEE-PALEDYDAVVIGASI 57 (175)
T ss_pred HHHHHHHHHHHhhhcCCeeeeeehhh------hhc-cChhhCceEEEecch
Confidence 34556666777777888876543332 222 234589999999874
No 402
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.22 E-value=4.2e+02 Score=20.99 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=28.7
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.+...++...++.+...+-+....-..++.|++.++..+++...
T Consensus 15 al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 15 AIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred HHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccc
Confidence 34444444556666665555444556788898999999887754
No 403
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.17 E-value=1.6e+02 Score=20.58 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
....+.+++.+..|..+...++. ++.|++.+.+++++.-
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~-~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSA-VEQAKERGAKIVAITS 78 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHH-HHHHHHCCCEEEEEeC
Confidence 34567899999999888888774 5666777888777663
No 404
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=21.13 E-value=2.5e+02 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCEEE-EecCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~ 151 (217)
.+.+++.+++.++|.|| +|..+
T Consensus 70 v~~~~~~~~~~~~d~IIaiGGGS 92 (370)
T cd08192 70 VEAGLAAYRAGGCDGVIAFGGGS 92 (370)
T ss_pred HHHHHHHHHhcCCCEEEEeCCch
Confidence 44566777788889888 66543
No 405
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=21.06 E-value=4.2e+02 Score=20.82 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCEEEEecC
Q 027929 130 KERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~ 150 (217)
...+.+..++.++|+||+..-
T Consensus 69 ~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 69 DAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHHHHhCcCEEEhHHh
Confidence 456788888899999988543
No 406
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=21.00 E-value=2.6e+02 Score=21.71 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=10.0
Q ss_pred cCCCEEEEecCC
Q 027929 140 LGLSAMIMGGRG 151 (217)
Q Consensus 140 ~~~dlIVlG~~~ 151 (217)
.++|.||+|+.-
T Consensus 67 ~~aD~ii~GSPt 78 (197)
T TIGR01755 67 ADYDAIIFGTPT 78 (197)
T ss_pred HHCCEEEEEecc
Confidence 479999999864
No 407
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=20.96 E-value=5.2e+02 Score=21.90 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=38.8
Q ss_pred CceEEEEEeecC---ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCcccc-----chhHHHhcCCCccEEEEeC
Q 027929 116 GLQYKIHIVKDH---DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLG-----SVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 116 ~v~v~~~v~~g~---~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~g-----S~s~~ll~~a~~PVlvv~~ 185 (217)
++.+.+++..|. +....+++.+++.++|.|.+..+. +. .+ +.| .....+-++.++||+..-+
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt--~~--~~----y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRT--KE--DG----YRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCC--Cc--cC----CCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 356666665552 235578888889999999997654 22 11 122 1345566667788877644
No 408
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.86 E-value=2.2e+02 Score=23.38 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
.=....+++++|.||.=-+| ..++... -...+...+||++|+.+.....
T Consensus 185 ~n~al~~~~~i~~lVtK~SG--~~g~~eK---------i~AA~~lgi~vivI~RP~~~~~ 233 (249)
T PF02571_consen 185 LNRALFRQYGIDVLVTKESG--GSGFDEK---------IEAARELGIPVIVIKRPPEPYG 233 (249)
T ss_pred HHHHHHHHcCCCEEEEcCCC--chhhHHH---------HHHHHHcCCeEEEEeCCCCCCC
Confidence 34556678899999988777 3222222 2356678999999987766643
No 409
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.80 E-value=1.2e+02 Score=25.53 Aligned_cols=37 Identities=14% Similarity=0.044 Sum_probs=28.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+=.+|-+...+.|..=+++-.+.|...|-...+++.-
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~ 68 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLP 68 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3445666777788888888888898888888877774
No 410
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=20.80 E-value=1.8e+02 Score=22.83 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCCCCCCCCCCCCCC
Q 027929 127 HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHDSRDDAELHPVPE 206 (217)
Q Consensus 127 ~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~~~~~~~~~~~~~ 206 (217)
.++.+.|+..+.+.+.|++=+-... .+. -++....||+.|=+..-+.-... ++.||+
T Consensus 101 nqp~e~il~~~~~~~ldiVQLHG~e----s~~-------------~~~~L~rpvikvfpln~n~~~~~------~~~vP~ 157 (227)
T KOG4202|consen 101 NQPEETILRAADSSDLDIVQLHGNE----SRA-------------AFSRLVRPVIKVFPLNANEDGKL------LNEVPE 157 (227)
T ss_pred cCCHHHHHHHHhhcCCceEEecCcc----cHH-------------HHHHhCCceEEEEecCchhhhHh------hccCCc
Confidence 4689999999999988888765433 111 11223456666654444443333 777777
Q ss_pred CC
Q 027929 207 ED 208 (217)
Q Consensus 207 ~~ 208 (217)
|+
T Consensus 158 ~d 159 (227)
T KOG4202|consen 158 ED 159 (227)
T ss_pred hh
Confidence 76
No 411
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.65 E-value=4.3e+02 Score=20.84 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=33.9
Q ss_pred HhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+...|+.+......+ +.. ..+++.+...++|-||++... .... ...-..+....+||+++-
T Consensus 21 i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~--~~~~---------~~~l~~~~~~~ipvV~~~ 87 (277)
T cd06319 21 VKSKAKALGYDAVELSAEN-SAKKELENLRTAIDKGVSGIIISPTN--SSAA---------VTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHhcCCeEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEcCCc--hhhh---------HHHHHHHHHCCCCEEEEe
Confidence 3344444576654332222 332 233444456789999887543 1111 111244566789998884
No 412
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=20.63 E-value=3.8e+02 Score=21.25 Aligned_cols=22 Identities=36% Similarity=0.296 Sum_probs=13.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHh
Q 027929 27 KIAIAVDLSDESAYAVRWAVENY 49 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la 49 (217)
++.|++|..+. ..+++++..+.
T Consensus 2 ~L~vALD~~~~-~~a~~i~~~~~ 23 (226)
T PF00215_consen 2 KLQVALDPTDL-EEALRIADELG 23 (226)
T ss_dssp EEEEEE-SSSH-HHHHHHHHHHG
T ss_pred CEEEEeCCCCH-HHHHHHHHHhc
Confidence 68899998866 44445544444
No 413
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=20.62 E-value=1.3e+02 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=36.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCc
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSV 66 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~ 66 (217)
..+|+|+.|....|....+..+.-+...|.+|+.+.+.++|.
T Consensus 40 ~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~g~~pTP~ 81 (448)
T PRK14316 40 RPKVLVGRDTRISGDMLESALIAGLLSVGAEVMRLGVIPTPG 81 (448)
T ss_pred CCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEecccchHH
Confidence 356999999999999998888888888999999999887764
No 414
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=20.61 E-value=3.7e+02 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=24.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
|++||||+ +.+.-+.+.++++.+ .|.++++++.-+
T Consensus 1 ~~~kvLi~-~~geia~~ii~a~~~----~Gi~~v~v~~~~ 35 (472)
T PRK07178 1 MIKKILIA-NRGEIAVRIVRACAE----MGIRSVAIYSEA 35 (472)
T ss_pred CCcEEEEE-CCcHHHHHHHHHHHH----cCCeEEEEeCCC
Confidence 46899998 666666666666554 477777777643
No 415
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=20.60 E-value=1.3e+02 Score=25.59 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 130 KERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 130 ~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
..++++..+.++++ .+|+|++. ++|--...++....+.|.+++...++-
T Consensus 151 p~avi~lL~~~~i~l~Gk~vvVIGRS~------------iVGkPla~lL~~~~ATVtvchs~T~nl 204 (299)
T PLN02516 151 PKGCLELLSRSGIPIKGKKAVVVGRSN------------IVGLPVSLLLLKADATVTVVHSRTPDP 204 (299)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCc------------cchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 66788888887755 48888665 455555566666678999997665543
No 416
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.56 E-value=1.2e+02 Score=27.63 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=9.1
Q ss_pred HHHHhCCCCCeEEEEEE
Q 027929 45 AVENYLRPGDAVVLLHV 61 (217)
Q Consensus 45 A~~la~~~~~~l~lvhV 61 (217)
|++.+.....-++++|.
T Consensus 16 a~rv~~~i~~~~~i~Hg 32 (511)
T TIGR01278 16 VLRIASSMKNVHAVMHA 32 (511)
T ss_pred HHHHHHhcCCcEEEeeC
Confidence 44444445555666665
No 417
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.50 E-value=5.5e+02 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=24.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
-.++|++.|...|..++..+... .+..+.++|+-
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~---~gl~~l~vt~~ 93 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKK---LGLNPLLVTVD 93 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHH---hCCceEEEEEC
Confidence 46999999999988887655432 35566777773
No 418
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.50 E-value=2.6e+02 Score=18.43 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=34.1
Q ss_pred hhcCceEEEEE--eecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 113 EEAGLQYKIHI--VKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 113 ~~~~v~v~~~v--~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
+..|+.++..+ ..++ ...+.+..++.++|+||.-... ..... . --|-..++.+-...+|++
T Consensus 27 ~~~Gi~~~~~~~ki~~~--~~~i~~~i~~g~id~VIn~~~~--~~~~~-~---~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 27 REAGLPVKTLHPKVHGG--ILAILDLIKNGEIDLVINTLYP--LGAQP-H---EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHCCCcceeccCCCCCC--CHHHHHHhcCCCeEEEEECCCc--Cccee-c---cCcHHHHHHHHHcCCCee
Confidence 34588775433 2222 2468999999999999986542 11111 1 114444555555556553
No 419
>PRK13435 response regulator; Provisional
Probab=20.37 E-value=2.6e+02 Score=19.73 Aligned_cols=48 Identities=10% Similarity=-0.083 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+...+.+.+..+|+||+...- ....... ...+.+-+...+|++++-.
T Consensus 39 ~~~~~~~~~~~~~dliivd~~~--~~~~~~~------~~~~~l~~~~~~pii~ls~ 86 (145)
T PRK13435 39 SEQAIALGRRRQPDVALVDVHL--ADGPTGV------EVARRLSADGGVEVVFMTG 86 (145)
T ss_pred HHHHHHHhhhcCCCEEEEeeec--CCCCcHH------HHHHHHHhCCCCCEEEEeC
Confidence 3445555566789999998642 1111111 1223333345688888854
No 420
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.35 E-value=1.2e+02 Score=25.50 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRS 191 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~ 191 (217)
...++++..+.++++ .+|+|++. ++|.-...++.+..+.|.+++...++-.
T Consensus 140 Tp~avi~lL~~y~i~l~Gk~vvVvGrS~------------iVGkPla~lL~~~~atVt~chs~T~nl~ 195 (282)
T PRK14166 140 TPLGVMKLLKAYEIDLEGKDAVIIGASN------------IVGRPMATMLLNAGATVSVCHIKTKDLS 195 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCC------------cchHHHHHHHHHCCCEEEEeCCCCCCHH
Confidence 367888888887654 58888665 4555555667667899998887655433
No 421
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=20.28 E-value=4.4e+02 Score=20.81 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=21.4
Q ss_pred hhhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEec
Q 027929 109 AEPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~ 149 (217)
.+.+++.|+.+....... +. ....++.....++|.||+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgii~~~ 63 (273)
T cd01541 22 ESVLSEKGYSLLLASTNN-DPERERKCLENMLSQGIDGLIIEP 63 (273)
T ss_pred HHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEec
Confidence 344445566664433322 33 22455556667788887754
No 422
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.26 E-value=5.1e+02 Score=21.52 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=41.0
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCCh------HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDM------KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~------~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
.+.++.+++.++|+.+-...-.|..+ .....+.+.++++|+|=+-.. |..-.+++..++
T Consensus 128 ~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~---------------~~~f~~vv~a~~ 192 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV---------------EEGFERITAGCP 192 (264)
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC---------------HHHHHHHHHcCC
Confidence 34456677788888766644444221 233456666788887754422 223356777889
Q ss_pred ccEEEEeC
Q 027929 178 CPVVVLRY 185 (217)
Q Consensus 178 ~PVlvv~~ 185 (217)
+||++---
T Consensus 193 vPVviaGG 200 (264)
T PRK08227 193 VPIVIAGG 200 (264)
T ss_pred CcEEEeCC
Confidence 99997743
No 423
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=20.24 E-value=4.1e+02 Score=21.24 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=34.0
Q ss_pred HhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+...|..+... ...+.. ...++.+...++|-||+-... . .. ....-+.+....+||+++-
T Consensus 21 i~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~dgiii~~~~--~----~~-----~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 21 AKKAAKEKGFTVVKI--DVPDGEKVLSAIDNLGAQGAKGFVICVPD--V----KL-----GPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred HHHHHHHcCCEEEEc--cCCCHHHHHHHHHHHHHcCCCEEEEccCc--h----hh-----hHHHHHHHHhCCCeEEEec
Confidence 334444567665433 222322 234555667889988885332 1 11 1122345667889999984
No 424
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.23 E-value=5.5e+02 Score=21.95 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRS 160 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~ 160 (217)
...|.++..+.++|.||+-+.. .+..-|+
T Consensus 114 l~~i~e~~~~~~yD~IV~DtaP--TG~TLRl 142 (322)
T COG0003 114 LLKILEYYVSGEYDVIVVDTAP--TGHTLRL 142 (322)
T ss_pred HHHHHHHHhccCCCEEEEcCCC--hHHHHHH
Confidence 4468889999999999999887 5555554
No 425
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.20 E-value=2.4e+02 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCEEE-EecCC
Q 027929 130 KERLCLEVERLGLSAMI-MGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIV-lG~~~ 151 (217)
.+.+++.+++.++|.|| +|..+
T Consensus 67 v~~~~~~~~~~~~D~IIaiGGGS 89 (398)
T cd08178 67 VRKGLELMNSFKPDTIIALGGGS 89 (398)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc
Confidence 44566777777888777 66443
No 426
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.19 E-value=1.7e+02 Score=24.56 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHDSRDD 198 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~~~~~ 198 (217)
...++++..+.++++ .+|+|++. ++|--...++....+.|.+++...++-.....+.|
T Consensus 141 Tp~aii~lL~~y~i~l~Gk~vvViGrS~------------~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~AD 203 (282)
T PRK14180 141 TPKGIMTMLREYGIKTEGAYAVVVGASN------------VVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKAD 203 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCC------------cchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcC
Confidence 477899999887554 68888665 45655566776677899999876655444433333
No 427
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=20.18 E-value=2.1e+02 Score=24.80 Aligned_cols=58 Identities=22% Similarity=0.119 Sum_probs=38.0
Q ss_pred EeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 123 IVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 123 v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
+++-+.+...|++..-+.+.+.|+++.+|.+.... |. |+ .+|-.....||.|+-+.+.
T Consensus 188 vVEk~avf~rLv~e~~~~k~nailVt~KGqP~raT-Rr---fl----krL~eel~lpv~vftDgDP 245 (356)
T COG1697 188 VVEKDAVFQRLVEEGFWEKENAILVTLKGQPDRAT-RR---FL----KRLNEELDLPVYVFTDGDP 245 (356)
T ss_pred EEechHHHHHHHHhhhhhhcCeEEEecCCCccHHH-HH---HH----HHHHHHhCCCEEEEecCCC
Confidence 34445789999999999999999999998311111 22 22 2333344678888866554
No 428
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.18 E-value=1.3e+02 Score=25.29 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=27.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
=.+|-+...+.|..=+++-.+.|.+.|-+..+++.-
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~ 70 (284)
T PRK14179 35 LVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLP 70 (284)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 345566777777777888888888888888877764
No 429
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.12 E-value=1.3e+02 Score=25.34 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCC-----EEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 129 MKERLCLEVERLGLS-----AMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 129 ~~~~I~~~a~~~~~d-----lIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
...++++..+.++++ .+|+|++. ++|.-...++.+..+.|.+++...++-
T Consensus 138 Tp~avi~lL~~~~i~l~Gk~vvViGrS~------------iVGkPla~lL~~~~aTVtichs~T~~l 192 (287)
T PRK14173 138 TPAGVVRLLKHYGIPLAGKEVVVVGRSN------------IVGKPLAALLLREDATVTLAHSKTQDL 192 (287)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEEECCCC------------ccHHHHHHHHHHCCCEEEEeCCCCCCH
Confidence 367889999887665 58888665 456555667766778888887665543
No 430
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=20.01 E-value=4.9e+02 Score=21.24 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
..+.+++.|++|..+.... +.++...+..+..+-|.-
T Consensus 8 ~~~~~~livaLD~~~~~~~-----~~~~~~~~~~~~~~Kvg~ 44 (240)
T COG0284 8 EAMSRRLIVALDVPTEEEA-----LAFVDKLGPTVDFVKVGK 44 (240)
T ss_pred hhcccCeEEEECCCCHHHH-----HHHHHHhhccccEEEEch
Confidence 3444559999999876554 555555555666666643
No 431
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.01 E-value=3.7e+02 Score=23.26 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=39.3
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHH-hcCCCccEEEEeCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC-VHHCVCPVVVLRYPD 187 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l-l~~a~~PVlvv~~~~ 187 (217)
++...|++++... . + .+-...++..+|.+|+|+.+ -... ++ .--+|+-.-.+ +++..+|++|+-+..
T Consensus 202 eL~~~GI~vtlI~--D-s---a~~~~M~~~~Vd~VivGAd~--I~an-Gv-~NKiGT~~lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 202 ELMQDNIPVTLIT--D-S---MAGIVMRQGMVDKVIVGADR--ITRD-AV-FNKIGTYTHSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred HHHHcCCCEEEEe--h-h---HHHHHhccCCCCEEEECccc--hhhc-Ce-ehhhhHHHHHHHHHHhCCCEEEEeecC
Confidence 3445688876443 2 1 23334445679999999987 3332 22 00246555344 466889999986533
No 432
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=20.01 E-value=2e+02 Score=25.61 Aligned_cols=29 Identities=7% Similarity=-0.137 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 34 LSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 34 ~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
....+++.+++|.++|++.+.+|+++|=.
T Consensus 184 T~~~~eRIar~AF~~A~~~~~~Vt~v~Ka 212 (409)
T TIGR00127 184 TDESIEGFAHSSFQLALEKKWPLYLSTKN 212 (409)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 34688999999999998887788888863
Done!