Query 027929
Match_columns 217
No_of_seqs 128 out of 1642
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 3.9E-26 1.3E-30 170.4 13.5 143 22-184 2-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 2.6E-25 8.7E-30 169.0 16.6 154 24-186 4-160 (162)
3 2dum_A Hypothetical protein PH 99.9 3.7E-25 1.3E-29 169.5 17.6 158 22-190 2-161 (170)
4 3hgm_A Universal stress protei 99.9 1.1E-25 3.7E-30 168.0 12.8 144 24-183 1-147 (147)
5 3tnj_A Universal stress protei 99.9 2.5E-25 8.7E-30 166.8 14.1 146 22-187 3-149 (150)
6 3fg9_A Protein of universal st 99.9 1.1E-24 3.8E-29 164.6 14.6 141 21-184 11-156 (156)
7 1tq8_A Hypothetical protein RV 99.9 8.5E-25 2.9E-29 167.1 13.0 145 21-187 13-160 (163)
8 3idf_A USP-like protein; unive 99.9 1.2E-24 4.2E-29 160.9 12.8 136 25-184 1-138 (138)
9 3dlo_A Universal stress protei 99.9 2E-24 6.7E-29 163.8 13.9 133 21-184 20-155 (155)
10 2z08_A Universal stress protei 99.9 2.2E-24 7.4E-29 159.6 12.6 136 24-184 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 99.9 7.1E-24 2.4E-28 163.2 14.5 152 22-187 2-165 (175)
12 3fdx_A Putative filament prote 99.9 1.4E-23 4.8E-28 155.9 11.3 141 25-184 1-143 (143)
13 3olq_A Universal stress protei 99.9 3.4E-22 1.2E-26 167.3 13.1 149 22-188 4-153 (319)
14 1jmv_A USPA, universal stress 99.9 7E-22 2.4E-26 146.5 10.6 138 24-187 1-140 (141)
15 3loq_A Universal stress protei 99.9 7.6E-22 2.6E-26 163.7 10.3 146 21-188 18-165 (294)
16 3cis_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 160.3 12.8 146 20-188 14-164 (309)
17 3mt0_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 160.3 11.0 128 21-187 3-130 (290)
18 3ab8_A Putative uncharacterize 99.8 4.2E-21 1.4E-25 157.0 11.6 148 26-188 1-152 (268)
19 1q77_A Hypothetical protein AQ 99.8 2.7E-21 9.3E-26 142.9 8.9 133 23-184 2-138 (138)
20 3mt0_A Uncharacterized protein 99.8 1.3E-20 4.5E-25 156.0 14.0 137 24-186 133-277 (290)
21 3cis_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 154.3 15.3 138 22-186 168-307 (309)
22 3loq_A Universal stress protei 99.8 1.8E-20 6.2E-25 155.3 12.5 125 23-187 168-292 (294)
23 3olq_A Universal stress protei 99.8 8.8E-20 3E-24 152.5 12.8 144 23-187 154-307 (319)
24 3ab8_A Putative uncharacterize 99.7 1.7E-17 5.8E-22 135.5 10.7 116 24-184 153-268 (268)
25 4b4k_A N5-carboxyaminoimidazol 95.3 0.15 5.3E-06 38.4 9.4 70 106-188 39-111 (181)
26 4grd_A N5-CAIR mutase, phospho 95.0 0.097 3.3E-06 39.2 7.3 69 106-187 29-100 (173)
27 2ywx_A Phosphoribosylaminoimid 94.8 0.15 5.2E-06 37.6 7.9 67 106-185 16-82 (157)
28 3trh_A Phosphoribosylaminoimid 94.4 0.23 7.9E-06 37.1 8.2 69 106-187 23-94 (169)
29 3kuu_A Phosphoribosylaminoimid 94.4 0.26 8.7E-06 37.0 8.4 69 106-187 29-100 (174)
30 1xmp_A PURE, phosphoribosylami 94.3 0.3 1E-05 36.5 8.5 70 106-188 28-100 (170)
31 3oow_A Phosphoribosylaminoimid 94.2 0.27 9.3E-06 36.6 8.3 70 106-188 22-94 (166)
32 2iel_A Hypothetical protein TT 94.1 1.1 3.8E-05 32.1 13.3 130 25-184 1-134 (138)
33 3lp6_A Phosphoribosylaminoimid 93.8 0.22 7.5E-06 37.4 7.2 69 106-187 24-95 (174)
34 3ors_A N5-carboxyaminoimidazol 93.8 0.25 8.7E-06 36.7 7.3 70 106-188 20-92 (163)
35 1u11_A PURE (N5-carboxyaminoim 93.7 0.35 1.2E-05 36.6 8.0 70 106-188 38-110 (182)
36 3a2k_A TRNA(Ile)-lysidine synt 93.6 0.34 1.2E-05 42.1 9.2 39 24-62 17-55 (464)
37 3qjg_A Epidermin biosynthesis 93.5 0.22 7.6E-06 37.6 6.9 115 23-185 3-118 (175)
38 3rg8_A Phosphoribosylaminoimid 93.5 0.25 8.6E-06 36.6 6.9 69 106-187 19-91 (159)
39 1o4v_A Phosphoribosylaminoimid 93.4 0.3 1E-05 37.0 7.2 69 107-188 31-102 (183)
40 1wy5_A TILS, hypothetical UPF0 93.3 0.78 2.7E-05 37.7 10.6 39 24-62 23-62 (317)
41 1g63_A Epidermin modifying enz 93.2 0.078 2.7E-06 40.3 3.8 115 24-186 1-116 (181)
42 3ih5_A Electron transfer flavo 92.0 0.5 1.7E-05 36.8 7.3 87 25-151 3-101 (217)
43 2xry_A Deoxyribodipyrimidine p 91.5 0.95 3.3E-05 39.5 9.2 98 27-151 38-137 (482)
44 3g40_A Na-K-CL cotransporter; 91.2 4.6 0.00016 32.8 12.1 125 26-189 21-150 (294)
45 3umv_A Deoxyribodipyrimidine p 90.6 0.98 3.4E-05 39.8 8.4 97 26-148 38-136 (506)
46 1p3y_1 MRSD protein; flavoprot 88.9 0.39 1.3E-05 36.8 4.0 43 141-185 81-123 (194)
47 2wq7_A RE11660P; lyase-DNA com 88.7 2.1 7.2E-05 37.9 9.2 100 27-150 30-133 (543)
48 2j4d_A Cryptochrome 3, cryptoc 88.4 9.9 0.00034 33.4 13.2 103 25-149 39-143 (525)
49 1np7_A DNA photolyase; protein 86.6 10 0.00035 32.9 12.2 101 27-150 7-109 (489)
50 1efv_B Electron transfer flavo 86.4 6.6 0.00022 31.2 10.0 29 33-62 37-67 (255)
51 1u3d_A Cryptochrome 1 apoprote 86.3 13 0.00045 32.4 12.8 125 26-185 12-138 (509)
52 1efp_B ETF, protein (electron 86.0 7.2 0.00024 30.9 10.0 30 32-62 33-64 (252)
53 3tvs_A Cryptochrome-1; circadi 85.8 1.3 4.4E-05 39.3 6.0 92 33-149 13-107 (538)
54 1o97_C Electron transferring f 85.6 3.5 0.00012 32.9 8.1 33 30-62 31-65 (264)
55 2h31_A Multifunctional protein 84.7 2 7E-05 36.8 6.5 69 105-186 281-353 (425)
56 1zun_A Sulfate adenylyltransfe 83.6 5.4 0.00018 32.9 8.5 38 25-62 46-83 (325)
57 1k92_A Argininosuccinate synth 82.9 23 0.00077 30.7 12.5 36 23-62 8-43 (455)
58 1dnp_A DNA photolyase; DNA rep 82.8 3.8 0.00013 35.6 7.6 92 33-149 10-103 (471)
59 3fy4_A 6-4 photolyase; DNA rep 81.6 5.4 0.00019 35.3 8.2 105 26-149 5-111 (537)
60 1ni5_A Putative cell cycle pro 81.3 4.6 0.00016 34.6 7.5 39 24-62 12-51 (433)
61 1owl_A Photolyase, deoxyribodi 80.8 11 0.00038 32.7 9.9 90 33-150 12-101 (484)
62 3g40_A Na-K-CL cotransporter; 80.5 3.3 0.00011 33.7 5.8 119 21-187 151-279 (294)
63 2j07_A Deoxyribodipyrimidine p 79.9 7.2 0.00024 33.3 8.2 86 33-150 11-96 (420)
64 2e0i_A 432AA long hypothetical 78.4 7.5 0.00026 33.4 7.9 117 33-185 10-126 (440)
65 3kcq_A Phosphoribosylglycinami 78.1 21 0.00073 27.4 9.9 88 22-151 5-92 (215)
66 3bl5_A Queuosine biosynthesis 75.8 23 0.00077 26.6 10.9 34 25-62 3-36 (219)
67 2c5s_A THII, probable thiamine 75.5 31 0.001 29.2 10.9 36 23-62 185-220 (413)
68 3p9x_A Phosphoribosylglycinami 75.0 24 0.00082 27.1 9.2 86 25-151 2-91 (211)
69 3da8_A Probable 5'-phosphoribo 74.9 14 0.00047 28.5 7.8 87 22-151 9-99 (215)
70 3zqu_A Probable aromatic acid 74.1 4.9 0.00017 31.0 5.0 37 23-60 2-38 (209)
71 1iv0_A Hypothetical protein; r 73.2 11 0.00038 25.2 6.1 56 128-185 38-93 (98)
72 2qv7_A Diacylglycerol kinase D 73.0 11 0.00037 30.9 7.3 71 108-189 47-118 (337)
73 2oq2_A Phosphoadenosine phosph 72.9 32 0.0011 27.0 9.9 37 25-62 41-77 (261)
74 2bon_A Lipid kinase; DAG kinas 71.7 13 0.00044 30.4 7.4 71 108-189 49-122 (332)
75 3o1l_A Formyltetrahydrofolate 71.3 40 0.0014 27.4 10.1 87 22-151 102-191 (302)
76 2nz2_A Argininosuccinate synth 71.2 37 0.0012 28.9 10.3 35 24-62 4-38 (413)
77 2wsi_A FAD synthetase; transfe 71.0 20 0.00068 29.1 8.3 92 26-151 54-167 (306)
78 1sur_A PAPS reductase; assimil 70.6 32 0.0011 25.9 10.3 33 26-62 45-77 (215)
79 3tqr_A Phosphoribosylglycinami 70.6 34 0.0012 26.3 10.0 86 24-151 4-93 (215)
80 1vbk_A Hypothetical protein PH 69.0 7 0.00024 31.9 5.1 34 24-62 178-211 (307)
81 3s40_A Diacylglycerol kinase; 68.2 18 0.00062 29.1 7.5 71 108-190 31-102 (304)
82 2ejb_A Probable aromatic acid 67.3 8.2 0.00028 29.2 4.9 34 26-60 2-35 (189)
83 3rjz_A N-type ATP pyrophosphat 66.9 44 0.0015 26.1 9.4 93 26-150 5-99 (237)
84 4ds3_A Phosphoribosylglycinami 66.6 41 0.0014 25.7 10.7 88 23-151 5-96 (209)
85 3n0v_A Formyltetrahydrofolate 65.3 52 0.0018 26.4 10.2 87 22-151 87-176 (286)
86 1v6t_A Hypothetical UPF0271 pr 63.6 32 0.0011 27.2 7.7 124 27-182 30-162 (255)
87 3lou_A Formyltetrahydrofolate 63.4 57 0.002 26.3 10.7 87 22-151 92-181 (292)
88 1qv9_A F420-dependent methylen 63.1 12 0.0004 29.6 5.0 49 130-187 53-101 (283)
89 2hma_A Probable tRNA (5-methyl 61.3 36 0.0012 28.5 8.2 36 23-62 7-42 (376)
90 2ywr_A Phosphoribosylglycinami 61.3 52 0.0018 25.1 10.8 21 131-151 70-90 (216)
91 2ywb_A GMP synthase [glutamine 60.9 71 0.0024 27.7 10.4 33 26-62 210-242 (503)
92 1xw8_A UPF0271 protein YBGL; N 59.2 34 0.0012 27.1 7.1 123 29-183 27-158 (252)
93 1qzu_A Hypothetical protein MD 58.9 10 0.00034 29.1 4.0 38 22-59 16-53 (206)
94 3kht_A Response regulator; PSI 57.0 42 0.0014 22.6 7.9 63 113-187 26-91 (144)
95 1sbz_A Probable aromatic acid 57.0 19 0.00063 27.4 5.2 35 26-60 1-35 (197)
96 1meo_A Phosophoribosylglycinam 56.5 63 0.0022 24.5 10.3 85 26-151 1-89 (209)
97 1kor_A Argininosuccinate synth 56.2 91 0.0031 26.3 10.9 34 26-62 1-34 (400)
98 3nbm_A PTS system, lactose-spe 54.1 16 0.00055 24.8 4.0 55 114-185 32-86 (108)
99 3obi_A Formyltetrahydrofolate 54.1 66 0.0022 25.8 8.3 39 22-61 86-124 (288)
100 1nu0_A Hypothetical protein YQ 54.0 12 0.00039 26.8 3.4 62 129-193 41-104 (138)
101 3fni_A Putative diflavin flavo 53.8 33 0.0011 24.6 6.0 44 105-151 22-66 (159)
102 3auf_A Glycinamide ribonucleot 53.7 75 0.0025 24.5 11.4 21 131-151 91-111 (229)
103 1mvl_A PPC decarboxylase athal 52.9 18 0.00061 27.8 4.5 35 23-59 17-51 (209)
104 2dfa_A Hypothetical UPF0271 pr 52.7 31 0.0011 27.3 5.9 125 27-183 30-163 (250)
105 1o97_D Electron transferring f 52.4 94 0.0032 25.3 10.1 34 27-61 2-41 (320)
106 3hly_A Flavodoxin-like domain; 52.0 39 0.0013 24.1 6.2 45 104-151 17-61 (161)
107 3k32_A Uncharacterized protein 51.4 22 0.00077 26.7 4.9 36 23-62 4-39 (203)
108 3nrb_A Formyltetrahydrofolate 51.2 76 0.0026 25.4 8.3 39 22-61 85-123 (287)
109 1ccw_A Protein (glutamate muta 51.0 60 0.0021 22.6 7.4 65 112-185 27-93 (137)
110 3av3_A Phosphoribosylglycinami 48.5 87 0.003 23.8 10.3 21 131-151 72-92 (212)
111 2x5e_A UPF0271 protein PA4511; 47.8 40 0.0014 26.6 5.8 127 27-182 36-171 (252)
112 3gxq_A Putative regulator of t 47.5 16 0.00053 20.6 2.5 28 118-145 11-38 (54)
113 1k68_A Phytochrome response re 46.2 61 0.0021 21.3 6.9 49 130-187 37-95 (140)
114 3f6p_A Transcriptional regulat 45.6 60 0.002 21.1 8.1 48 130-186 35-82 (120)
115 2amj_A Modulator of drug activ 45.6 73 0.0025 23.8 7.0 44 106-151 37-80 (204)
116 3l52_A Orotidine 5'-phosphate 43.6 1.2E+02 0.0042 24.2 8.3 36 26-61 23-68 (284)
117 3lqk_A Dipicolinate synthase s 42.6 25 0.00087 26.7 3.9 36 23-59 5-41 (201)
118 2l2q_A PTS system, cellobiose- 41.8 51 0.0017 22.0 5.1 34 112-151 28-61 (109)
119 3t8y_A CHEB, chemotaxis respon 41.8 86 0.0029 21.8 8.2 50 130-188 60-109 (164)
120 3ecs_A Translation initiation 41.5 79 0.0027 25.8 7.0 67 109-186 165-232 (315)
121 2i2x_B MTAC, methyltransferase 41.2 94 0.0032 24.2 7.3 66 112-186 147-213 (258)
122 3dbi_A Sugar-binding transcrip 41.1 1.1E+02 0.0038 24.2 7.9 65 108-185 85-151 (338)
123 2yxb_A Coenzyme B12-dependent 40.5 37 0.0013 24.6 4.5 65 112-185 42-108 (161)
124 1vhx_A Putative holliday junct 39.9 9.2 0.00031 27.7 1.0 58 128-186 42-99 (150)
125 2gkg_A Response regulator homo 39.5 74 0.0025 20.4 8.1 46 130-183 38-86 (127)
126 3gt7_A Sensor protein; structu 39.1 90 0.0031 21.3 7.6 48 130-186 40-90 (154)
127 1w2w_B 5-methylthioribose-1-ph 39.1 15 0.00051 27.8 2.1 68 112-188 26-96 (191)
128 1y80_A Predicted cobalamin bin 38.6 47 0.0016 24.9 4.9 65 112-185 112-179 (210)
129 4e7p_A Response regulator; DNA 38.3 91 0.0031 21.1 8.0 49 130-187 55-104 (150)
130 3mcu_A Dipicolinate synthase, 37.9 31 0.0011 26.4 3.8 36 24-60 4-40 (207)
131 3pm6_A Putative fructose-bisph 36.7 25 0.00086 28.7 3.2 70 113-187 23-92 (306)
132 1jkx_A GART;, phosphoribosylgl 36.1 1.4E+02 0.0048 22.6 10.4 21 131-151 69-89 (212)
133 3o1i_D Periplasmic protein TOR 36.0 1.4E+02 0.0047 22.9 7.6 63 109-183 28-93 (304)
134 3l6u_A ABC-type sugar transpor 35.9 1.4E+02 0.0049 22.7 8.8 66 108-185 30-97 (293)
135 2qzj_A Two-component response 35.8 96 0.0033 20.6 7.8 48 130-186 37-84 (136)
136 2pg3_A Queuosine biosynthesis 35.8 63 0.0022 24.5 5.4 34 25-62 2-35 (232)
137 3cg0_A Response regulator rece 35.8 93 0.0032 20.5 7.4 50 130-187 43-92 (140)
138 1s8n_A Putative antiterminator 35.8 1.2E+02 0.0042 21.8 7.3 47 130-185 47-93 (205)
139 8abp_A L-arabinose-binding pro 35.3 1.1E+02 0.0037 23.6 6.8 64 108-184 24-89 (306)
140 2a0u_A Initiation factor 2B; S 35.2 48 0.0016 27.9 4.8 69 110-187 231-300 (383)
141 3a11_A Translation initiation 34.8 28 0.00094 28.8 3.2 67 111-188 187-254 (338)
142 3kke_A LACI family transcripti 34.8 1.6E+02 0.0053 22.8 7.8 62 110-186 39-103 (303)
143 3r89_A Orotidine 5'-phosphate 34.7 1.8E+02 0.0061 23.4 8.5 36 26-61 18-65 (290)
144 2o8v_A Phosphoadenosine phosph 34.7 1.6E+02 0.0053 22.7 9.3 32 26-61 46-77 (252)
145 2zay_A Response regulator rece 34.7 1E+02 0.0035 20.6 8.2 49 130-187 41-92 (147)
146 3rot_A ABC sugar transporter, 34.6 1E+02 0.0036 23.7 6.6 68 108-186 25-95 (297)
147 3vk5_A MOEO5; TIM barrel, tran 34.5 57 0.002 26.3 4.9 48 133-186 58-106 (286)
148 1jq5_A Glycerol dehydrogenase; 34.4 94 0.0032 25.5 6.6 67 107-186 49-119 (370)
149 2yvk_A Methylthioribose-1-phos 34.2 47 0.0016 27.9 4.6 70 110-188 227-297 (374)
150 1v95_A Nuclear receptor coacti 33.8 1.1E+02 0.0038 21.4 5.8 47 104-150 23-70 (130)
151 3qk7_A Transcriptional regulat 33.2 1.6E+02 0.0056 22.5 10.0 68 105-185 29-96 (294)
152 3elf_A Fructose-bisphosphate a 32.9 40 0.0014 28.0 3.9 81 107-189 11-99 (349)
153 3l49_A ABC sugar (ribose) tran 32.7 1.4E+02 0.0049 22.6 7.2 66 108-185 27-94 (291)
154 3h5i_A Response regulator/sens 32.7 1.1E+02 0.0037 20.3 8.8 51 130-188 38-89 (140)
155 1gvf_A Tagatose-bisphosphate a 32.7 28 0.00097 28.1 2.9 70 115-188 16-85 (286)
156 2qjg_A Putative aldolase MJ040 32.6 1.5E+02 0.0052 22.9 7.3 70 103-185 132-210 (273)
157 1y5e_A Molybdenum cofactor bio 32.1 1.4E+02 0.0049 21.5 6.6 40 108-148 36-79 (169)
158 5nul_A Flavodoxin; electron tr 31.9 95 0.0032 21.0 5.4 41 104-151 15-55 (138)
159 2ozz_A Hypothetical protein YH 31.5 1E+02 0.0036 23.8 5.9 38 108-150 37-74 (231)
160 1dd9_A DNA primase, DNAG; topr 31.3 83 0.0028 25.9 5.6 36 25-60 206-244 (338)
161 2o2z_A Hypothetical protein; s 31.1 1.9E+02 0.0065 23.6 7.7 66 118-190 155-223 (323)
162 1t9k_A Probable methylthioribo 31.0 52 0.0018 27.3 4.3 68 110-186 202-270 (347)
163 4drs_A Pyruvate kinase; glycol 30.9 78 0.0027 27.9 5.6 44 129-186 412-456 (526)
164 2ppv_A Uncharacterized protein 30.6 1.8E+02 0.0061 23.9 7.4 65 118-189 154-221 (332)
165 2is8_A Molybdopterin biosynthe 30.4 1.1E+02 0.0039 21.9 5.7 40 108-148 26-69 (164)
166 3q94_A Fructose-bisphosphate a 30.2 37 0.0013 27.4 3.2 69 115-187 19-90 (288)
167 3m9w_A D-xylose-binding peripl 30.0 1.9E+02 0.0065 22.3 9.2 63 112-186 28-92 (313)
168 2a9o_A Response regulator; ess 29.8 1.1E+02 0.0037 19.4 7.9 48 130-186 34-81 (120)
169 3w01_A Heptaprenylglyceryl pho 29.4 66 0.0023 25.1 4.4 70 132-212 27-97 (235)
170 3iwt_A 178AA long hypothetical 29.3 1.1E+02 0.0036 22.2 5.5 41 108-149 45-89 (178)
171 2l69_A Rossmann 2X3 fold prote 29.2 82 0.0028 20.9 4.2 37 114-150 48-84 (134)
172 1mkz_A Molybdenum cofactor bio 29.2 1.6E+02 0.0056 21.3 6.6 40 108-148 33-76 (172)
173 3qay_A Endolysin; amidase A/B 29.2 1.7E+02 0.0058 21.4 6.7 45 103-147 33-83 (180)
174 3i42_A Response regulator rece 29.2 1.2E+02 0.004 19.6 9.3 51 130-189 36-89 (127)
175 3khd_A Pyruvate kinase; malari 28.7 90 0.0031 27.4 5.6 44 129-186 406-450 (520)
176 3uhj_A Probable glycerol dehyd 28.6 91 0.0031 26.0 5.5 68 106-186 69-139 (387)
177 3gg8_A Pyruvate kinase; malari 28.6 87 0.003 27.5 5.4 44 129-186 397-441 (511)
178 2rjn_A Response regulator rece 28.4 1.4E+02 0.0047 20.1 7.1 48 130-186 40-88 (154)
179 2qvg_A Two component response 28.3 1.3E+02 0.0045 19.8 7.8 49 130-187 42-99 (143)
180 3gl9_A Response regulator; bet 28.0 1.2E+02 0.0043 19.5 7.8 49 130-187 35-86 (122)
181 3hqn_D Pyruvate kinase, PK; TI 27.9 91 0.0031 27.2 5.4 44 129-186 381-425 (499)
182 3q9s_A DNA-binding response re 27.4 2E+02 0.0068 21.7 7.8 49 130-187 70-118 (249)
183 4edg_A DNA primase; catalytic 27.2 43 0.0015 27.5 3.1 35 25-59 195-229 (329)
184 3rpe_A MDAB, modulator of drug 27.2 1.8E+02 0.0063 22.1 6.6 41 108-151 52-93 (218)
185 1t5o_A EIF2BD, translation ini 27.1 62 0.0021 26.8 4.1 69 110-188 200-269 (351)
186 1ydg_A Trp repressor binding p 27.1 71 0.0024 23.6 4.2 11 141-151 78-88 (211)
187 1e0t_A Pyruvate kinase, PK; ph 27.0 92 0.0031 27.0 5.3 45 128-186 357-402 (470)
188 3cnb_A DNA-binding response re 27.0 1.4E+02 0.0047 19.6 6.0 49 130-187 43-94 (143)
189 3lua_A Response regulator rece 26.9 1.4E+02 0.0047 19.7 5.6 50 130-187 38-91 (140)
190 1t57_A Conserved protein MTH16 26.9 1.8E+02 0.0061 22.1 6.2 16 166-181 94-109 (206)
191 3kbq_A Protein TA0487; structu 26.7 1.7E+02 0.006 21.3 6.2 41 108-149 28-70 (172)
192 3hv2_A Response regulator/HD d 26.6 1.5E+02 0.0051 20.0 7.1 49 130-187 47-96 (153)
193 3heb_A Response regulator rece 26.6 1.5E+02 0.0051 19.9 6.7 40 139-187 57-99 (152)
194 3ouz_A Biotin carboxylase; str 26.5 1.9E+02 0.0066 24.1 7.3 36 22-62 3-38 (446)
195 3grc_A Sensor protein, kinase; 26.4 1.4E+02 0.0048 19.6 8.5 48 130-186 39-89 (140)
196 3uug_A Multiple sugar-binding 26.1 2.3E+02 0.0078 21.9 8.2 67 108-186 25-93 (330)
197 3g1w_A Sugar ABC transporter; 26.1 2.2E+02 0.0075 21.7 9.4 67 109-186 27-95 (305)
198 2oqr_A Sensory transduction pr 26.0 1.9E+02 0.0066 21.0 8.0 48 130-186 37-84 (230)
199 1zco_A 2-dehydro-3-deoxyphosph 25.7 2.4E+02 0.0082 22.0 8.5 41 105-151 76-116 (262)
200 1k66_A Phytochrome response re 25.5 1.5E+02 0.0051 19.5 7.6 49 130-187 41-102 (149)
201 1vb5_A Translation initiation 25.5 1.9E+02 0.0065 22.8 6.6 47 141-190 177-224 (276)
202 4f2d_A L-arabinose isomerase; 25.4 2.4E+02 0.0083 24.4 7.8 46 130-186 60-106 (500)
203 1a3w_A Pyruvate kinase; allost 25.4 1.1E+02 0.0038 26.7 5.5 46 129-188 382-428 (500)
204 3jy6_A Transcriptional regulat 25.3 2.2E+02 0.0075 21.4 9.8 64 107-185 28-93 (276)
205 3qi7_A Putative transcriptiona 25.2 1.7E+02 0.0058 24.4 6.4 94 26-151 13-121 (371)
206 3okf_A 3-dehydroquinate syntha 25.1 2.8E+02 0.0097 23.1 7.9 68 106-186 79-158 (390)
207 3gr4_A Pyruvate kinase isozyme 24.9 97 0.0033 27.4 5.1 44 129-186 431-475 (550)
208 1vp8_A Hypothetical protein AF 24.8 1.7E+02 0.0059 22.1 5.8 68 108-183 35-104 (201)
209 3k9c_A Transcriptional regulat 24.7 2.3E+02 0.008 21.5 8.2 42 110-151 35-76 (289)
210 3egc_A Putative ribose operon 24.7 2.3E+02 0.0079 21.5 10.4 66 107-186 29-96 (291)
211 3qxc_A Dethiobiotin synthetase 24.5 1E+02 0.0035 23.9 4.8 51 130-186 118-170 (242)
212 2au3_A DNA primase; zinc ribbo 24.4 71 0.0024 26.9 4.1 34 26-59 288-321 (407)
213 2pjk_A 178AA long hypothetical 24.3 1.9E+02 0.0066 21.1 6.1 41 108-149 45-89 (178)
214 2pju_A Propionate catabolism o 24.1 2.4E+02 0.0082 21.5 7.8 65 102-184 22-89 (225)
215 3ezx_A MMCP 1, monomethylamine 24.1 68 0.0023 24.4 3.6 65 112-185 116-185 (215)
216 3to5_A CHEY homolog; alpha(5)b 24.1 1.8E+02 0.0061 20.0 6.4 49 130-187 46-97 (134)
217 2h3h_A Sugar ABC transporter, 23.9 2.5E+02 0.0086 21.6 8.0 67 108-185 22-90 (313)
218 3ilh_A Two component response 23.6 1.6E+02 0.0055 19.3 8.9 48 130-186 44-101 (146)
219 3kyj_B CHEY6 protein, putative 23.4 87 0.003 21.0 3.9 47 130-185 48-95 (145)
220 2q5c_A NTRC family transcripti 23.4 2.3E+02 0.0078 20.9 8.1 63 102-184 14-77 (196)
221 1rvg_A Fructose-1,6-bisphospha 23.3 46 0.0016 27.1 2.6 71 113-188 13-83 (305)
222 2fqx_A Membrane lipoprotein TM 23.2 2.7E+02 0.0094 21.8 8.5 60 112-184 33-93 (318)
223 3pdk_A Phosphoglucosamine muta 23.1 86 0.003 26.9 4.4 42 24-65 60-101 (469)
224 2p0y_A Hypothetical protein LP 23.1 1.2E+02 0.0042 25.0 5.1 52 129-187 178-230 (341)
225 2fz5_A Flavodoxin; alpha/beta 22.9 1.7E+02 0.0059 19.4 5.6 41 104-151 16-56 (137)
226 2lpm_A Two-component response 22.8 1.6E+02 0.0053 20.0 5.0 47 130-186 42-88 (123)
227 2f6u_A GGGPS, (S)-3-O-geranylg 22.6 84 0.0029 24.4 3.9 72 131-213 23-95 (234)
228 1of8_A Phospho-2-dehydro-3-deo 22.4 3.3E+02 0.011 22.7 7.6 131 23-185 64-203 (370)
229 2xdq_A Light-independent proto 22.4 47 0.0016 28.3 2.6 25 126-151 113-138 (460)
230 3t05_A Pyruvate kinase, PK; te 22.4 1.3E+02 0.0044 27.0 5.4 44 129-186 380-424 (606)
231 1qkk_A DCTD, C4-dicarboxylate 22.3 1.7E+02 0.0057 19.7 5.3 47 130-185 36-83 (155)
232 3inp_A D-ribulose-phosphate 3- 22.3 63 0.0022 25.3 3.1 42 107-150 184-225 (246)
233 3rfq_A Pterin-4-alpha-carbinol 22.2 2.3E+02 0.0078 20.9 6.1 40 109-149 55-97 (185)
234 2fzv_A Putative arsenical resi 22.2 1.7E+02 0.006 23.2 5.8 41 23-63 56-99 (279)
235 2isw_A Putative fructose-1,6-b 21.9 56 0.0019 26.8 2.8 73 111-187 12-85 (323)
236 1wqa_A Phospho-sugar mutase; a 21.9 68 0.0023 27.3 3.5 41 25-65 41-81 (455)
237 3pmg_A Alpha-D-glucose-1,6-bis 21.9 67 0.0023 28.4 3.6 41 25-65 53-96 (561)
238 2g2c_A Putative molybdenum cof 21.9 1.6E+02 0.0053 21.2 5.1 37 112-149 38-77 (167)
239 2qr3_A Two-component system re 21.9 1.7E+02 0.0059 19.0 6.3 22 130-151 36-57 (140)
240 3gbv_A Putative LACI-family tr 21.9 1.9E+02 0.0066 21.9 6.1 60 116-186 40-103 (304)
241 3gv0_A Transcriptional regulat 21.7 2.7E+02 0.0091 21.1 8.0 65 108-185 32-97 (288)
242 1tjy_A Sugar transport protein 21.6 2.9E+02 0.0098 21.4 7.5 63 112-185 29-93 (316)
243 1p5d_X PMM, phosphomannomutase 21.5 83 0.0028 26.9 4.0 42 25-66 48-89 (463)
244 2e28_A Pyruvate kinase, PK; al 21.5 1.4E+02 0.0049 26.6 5.6 44 129-186 361-405 (587)
245 3n9r_A Fructose-bisphosphate a 21.5 45 0.0015 27.2 2.1 72 112-187 12-84 (307)
246 3dff_A Teicoplanin pseudoaglyc 21.4 3E+02 0.01 21.5 9.8 51 129-184 136-186 (273)
247 4dad_A Putative pilus assembly 21.4 1.9E+02 0.0063 19.2 5.7 51 128-187 53-105 (146)
248 3us8_A Isocitrate dehydrogenas 21.4 1.4E+02 0.0049 25.4 5.3 27 35-61 207-233 (427)
249 2q7x_A UPF0052 protein SP_1565 21.4 1.6E+02 0.0056 24.0 5.5 52 129-187 174-226 (326)
250 2der_A TRNA-specific 2-thiouri 21.3 94 0.0032 25.9 4.2 37 22-62 14-50 (380)
251 2jba_A Phosphate regulon trans 21.2 1.7E+02 0.0058 18.7 5.0 48 130-186 35-85 (127)
252 2m1z_A LMO0427 protein; homolo 21.1 46 0.0016 22.6 1.8 44 107-151 24-67 (106)
253 1x92_A APC5045, phosphoheptose 21.0 78 0.0027 23.1 3.3 39 23-62 111-149 (199)
254 4aoy_A Isocitrate dehydrogenas 21.0 1.3E+02 0.0044 25.5 4.9 27 35-61 184-210 (402)
255 3n53_A Response regulator rece 20.9 1.9E+02 0.0063 19.0 8.1 49 130-187 35-86 (140)
256 3k4h_A Putative transcriptiona 20.8 2.5E+02 0.0084 21.2 6.5 64 108-185 35-100 (292)
257 3brs_A Periplasmic binding pro 20.8 1.7E+02 0.0057 22.2 5.4 66 109-185 30-98 (289)
258 2yva_A DNAA initiator-associat 20.8 84 0.0029 22.8 3.5 39 23-62 107-145 (196)
259 3n0r_A Response regulator; sig 20.8 3E+02 0.01 21.4 8.3 50 130-187 194-243 (286)
260 1sqs_A Conserved hypothetical 20.8 2.1E+02 0.0072 21.6 5.9 20 130-151 70-89 (242)
261 3qw3_A Orotidine-5-phosphate d 20.7 2.3E+02 0.0079 22.1 6.2 38 24-61 12-50 (255)
262 3cg4_A Response regulator rece 20.6 1.9E+02 0.0064 18.9 9.2 49 130-187 40-91 (142)
263 3exr_A RMPD (hexulose-6-phosph 20.6 1.6E+02 0.0055 22.3 5.1 33 24-61 4-36 (221)
264 3snk_A Response regulator CHEY 20.5 1.4E+02 0.0047 19.6 4.4 47 132-187 50-97 (135)
265 1dos_A Aldolase class II; lyas 20.3 78 0.0027 26.4 3.4 80 108-189 20-113 (358)
266 2j48_A Two-component sensor ki 20.2 1.7E+02 0.0056 18.1 8.7 50 130-188 34-86 (119)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=3.9e-26 Score=170.45 Aligned_cols=143 Identities=21% Similarity=0.220 Sum_probs=117.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
.+++++||||+|+|+.+..+++||+.+|+..+++|+++||++........... ....+.+...+..
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDP--------------VLSELLDAEAAHA 67 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHH--------------HHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccc--------------ccHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999875432110000 1122233344455
Q ss_pred HHHHHHHhhhhhhcCc-eEEEEEeecCChHHHHHH-HHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCcc
Q 027929 102 ATNAKNIAEPLEEAGL-QYKIHIVKDHDMKERLCL-EVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCP 179 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~I~~-~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~P 179 (217)
++.++++.+.+...|+ .+++.+..| ++.+.|++ ++++.++||||||+++ ++.+.++ ++||++++|+++++||
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~--~~~~~~~---~~Gs~~~~vl~~~~~p 141 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATG--TNSPHRV---AVGSTTSYVVDHAPCN 141 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCC--SSCTTTC---SSCHHHHHHHHHCSSE
T ss_pred HHHHHHHHHHHHhcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCC--CCCcceE---EEcchHHHHhccCCCC
Confidence 5556666667777899 999999999 79999999 9999999999999999 9999999 9999999999999999
Q ss_pred EEEEe
Q 027929 180 VVVLR 184 (217)
Q Consensus 180 Vlvv~ 184 (217)
|||||
T Consensus 142 VlvV~ 146 (146)
T 3s3t_A 142 VIVIR 146 (146)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=2.6e-25 Score=169.02 Aligned_cols=154 Identities=22% Similarity=0.229 Sum_probs=114.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcc---cCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVL---YGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
++++||||+|+|+.+..+++||+.+|+..+++|+++||++.... ....+...... ... .. ......+.+...+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAG-LNK-SV-EEFENELKNKLTEE 80 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-------------------C-HHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccc-ccc-ch-hhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999875310 00001000000 000 00 00001122333444
Q ss_pred HHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 101 TATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.++.++++.+.+...|++++..+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++|||
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g--~~~~~~~---~~GSv~~~vl~~~~~pV 154 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHG--KTNLKEI---LLGSVTENVIKKSNKPV 154 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCC--SSCCTTC---SSCHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCC-CHHHHHHHHHHHcCCCEEEEcCCC--CCCccce---EecchHHHHHHhCCCCE
Confidence 45555666666777899999999998 799999999999999999999999 9999999 99999999999999999
Q ss_pred EEEeCC
Q 027929 181 VVLRYP 186 (217)
Q Consensus 181 lvv~~~ 186 (217)
||||+.
T Consensus 155 lvv~~~ 160 (162)
T 1mjh_A 155 LVVKRK 160 (162)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999864
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.93 E-value=3.7e-25 Score=169.53 Aligned_cols=158 Identities=17% Similarity=0.102 Sum_probs=114.4
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
+.++++||||+|+++.+..+++||+.+|+..+++|+++||++....... ............. ....+.+...+..
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~ 76 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEEL-MDGYSFFYDNAEI----ELKDIKEKLKEEA 76 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCC-C----------------CCTTSHHHHHHHH
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-ccccccccccccc----cHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999875432100 0000000000000 0112223334444
Q ss_pred HHHHHHHhhhhhhcCceEEE--EEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCcc
Q 027929 102 ATNAKNIAEPLEEAGLQYKI--HIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCP 179 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~--~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~P 179 (217)
++.++++.+.+...|+.+++ .+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++||
T Consensus 77 ~~~l~~~~~~~~~~g~~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g--~~~~~~~---~~Gsv~~~vl~~~~~P 150 (170)
T 2dum_A 77 SRKLQEKAEEVKRAFRAKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRG--KLSLSHE---FLGSTVMRVLRKTKKP 150 (170)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCC--CCC--TT---CCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCC--CCccccc---eechHHHHHHHhCCCC
Confidence 45555666666667888888 88888 799999999999999999999999 8999999 9999999999999999
Q ss_pred EEEEeCCCCCC
Q 027929 180 VVVLRYPDDSR 190 (217)
Q Consensus 180 Vlvv~~~~~~~ 190 (217)
|||||...+..
T Consensus 151 Vlvv~~~~~~~ 161 (170)
T 2dum_A 151 VLIIKEVDENE 161 (170)
T ss_dssp EEEECCCCCC-
T ss_pred EEEEccCCccc
Confidence 99999766544
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.93 E-value=1.1e-25 Score=168.04 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=115.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
|+++||||+|+|+.+..+++||+.+|+..+++|+++||++....... +..... ......+.+...+..++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~ 70 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEA-SLSMAR---------PEQLDIPDDALKDYATE 70 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHH-TBSSCC---------CGGGCCCTTHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-cccccC---------hhhhhhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986531110 000000 00112233444455556
Q ss_pred HHHHHhhhhhhcCceE---EEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 104 NAKNIAEPLEEAGLQY---KIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v---~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.++++.+.+...|+.+ +..+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++|||
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~--~~~~~~~---~~Gs~~~~vl~~~~~pV 144 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQG--TNGDKSL---LLGSVAQRVAGSAHCPV 144 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSC--TTCCSCC---CCCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHhcCCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCC--Cccccce---eeccHHHHHHhhCCCCE
Confidence 6666677777788888 9999998 799999999999999999999999 9999999 99999999999999999
Q ss_pred EEE
Q 027929 181 VVL 183 (217)
Q Consensus 181 lvv 183 (217)
|||
T Consensus 145 lvV 147 (147)
T 3hgm_A 145 LVV 147 (147)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 5
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.93 E-value=2.5e-25 Score=166.84 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=99.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
++++++||||+|+|+.+..+++||+.+|...+++|+++||++........++..... ......+...+..
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 72 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPL----------DTETTYDAMLDVE 72 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCS----------SSCCCHHHHHHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCc----------CHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999987643211011111000 0111222333333
Q ss_pred HHHHHHHhhhhhhcCce-EEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 102 ATNAKNIAEPLEEAGLQ-YKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
++.++++.+. .|+. ++..+..| ++.+.|++++++.++||||||+++ ++.+. . ++||++++|+++++|||
T Consensus 73 ~~~l~~~~~~---~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~--~~~~~-~---~~Gs~~~~vl~~~~~pV 142 (150)
T 3tnj_A 73 KQKLSQIGNT---LGIDPAHRWLVWG-EPREEIIRIAEQENVDLIVVGSHG--RHGLA-L---LLGSTANSVLHYAKCDV 142 (150)
T ss_dssp HHHHHHHHHH---HTCCGGGEEEEES-CHHHHHHHHHHHTTCSEEEEEEC--------------CCCHHHHHHHHCSSEE
T ss_pred HHHHHHHHHH---cCCCcceEEEecC-CHHHHHHHHHHHcCCCEEEEecCC--CCCcC-e---EecchHHHHHHhCCCCE
Confidence 3333333332 3665 46778888 799999999999999999999999 88888 8 99999999999999999
Q ss_pred EEEeCCC
Q 027929 181 VVLRYPD 187 (217)
Q Consensus 181 lvv~~~~ 187 (217)
||||+.+
T Consensus 143 lvv~~~~ 149 (150)
T 3tnj_A 143 LAVRLRD 149 (150)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999754
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.92 E-value=1.1e-24 Score=164.59 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=113.9
Q ss_pred CCCCCcEEEEEec--CChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHH
Q 027929 21 TNGAQRKIAIAVD--LSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTET 98 (217)
Q Consensus 21 ~~~~~~~IlVavD--~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
.+.++++||||+| +|+.+..+++||+.+|+..+++|+++||++...... +.. ......+...
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~--------------~~~~~~~~~~ 74 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI--FDS--------------LTPSKIQAKR 74 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC--CCS--------------SHHHHHHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc--ccc--------------CCHHHHHHHH
Confidence 4678999999999 999999999999999999999999999988653211 000 0112233444
Q ss_pred HHHHHHHHHHhhhhhhcCc-eEEEEEee-cCChHHHHHHH-HHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC
Q 027929 99 DLTATNAKNIAEPLEEAGL-QYKIHIVK-DHDMKERLCLE-VERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH 175 (217)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~v-~v~~~v~~-g~~~~~~I~~~-a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~ 175 (217)
+..++.++++.+.+...|+ .+++.+.. | ++.+.|+++ +++.++||||||+++ ++.+. . ++||++++|+++
T Consensus 75 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g-~~~~~I~~~~a~~~~~DlIV~G~~g--~~~~~-~---~~Gs~~~~vl~~ 147 (156)
T 3fg9_A 75 KHVEDVVAEYVQLAEQRGVNQVEPLVYEGG-DVDDVILEQVIPEFKPDLLVTGADT--EFPHS-K---IAGAIGPRLARK 147 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEECS-CHHHHHHHTHHHHHCCSEEEEETTC--CCTTS-S---SCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCC-CHHHHHHHHHHHhcCCCEEEECCCC--CCccc-e---eecchHHHHHHh
Confidence 4555566666666777898 59999999 6 899999999 999999999999999 88885 6 899999999999
Q ss_pred CCccEEEEe
Q 027929 176 CVCPVVVLR 184 (217)
Q Consensus 176 a~~PVlvv~ 184 (217)
++|||||||
T Consensus 148 a~~PVlvV~ 156 (156)
T 3fg9_A 148 APISVIVVR 156 (156)
T ss_dssp CSSEEEEEC
T ss_pred CCCCEEEeC
Confidence 999999996
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.92 E-value=8.5e-25 Score=167.10 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=107.4
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE--EEEeCCcccCcccccccCCCCCCCcCCCccccccchHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL--HVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTET 98 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv--hV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
...++++||||+|+|+.+..+++||+.+|+ .+++|+++ ||++...... .+. .. . ....+.+.+.
T Consensus 13 ~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~-~~~---~~---~----~~~~~~~~~~-- 78 (163)
T 1tq8_A 13 SLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA-ADI---LK---D----ESYKVTGTAP-- 78 (163)
T ss_dssp CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-------------------------------CCT--
T ss_pred ccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc-ccc---cc---c----HHHHHHHHHH--
Confidence 567889999999999999999999999999 99999999 8776432100 000 00 0 0011111222
Q ss_pred HHHHHHHHHHhhhhhhcCce-EEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 99 DLTATNAKNIAEPLEEAGLQ-YKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
.++.++++.+.+...|+. +++.+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++
T Consensus 79 --~~~~l~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g--~~~~~~~---~lGSva~~vl~~a~ 150 (163)
T 1tq8_A 79 --IYEILHDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVG--LSTIAGR---LLGSVPANVSRRAK 150 (163)
T ss_dssp --HHHHHHHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCC--CCSHHHH---HTBBHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCC--CCcccce---eeccHHHHHHHhCC
Confidence 223333444455557888 99999988 799999999999999999999999 9999999 99999999999999
Q ss_pred ccEEEEeCCC
Q 027929 178 CPVVVLRYPD 187 (217)
Q Consensus 178 ~PVlvv~~~~ 187 (217)
|||||||...
T Consensus 151 ~PVlvV~~~~ 160 (163)
T 1tq8_A 151 VDVLIVHTTE 160 (163)
T ss_dssp CEEEEECCC-
T ss_pred CCEEEEeCCC
Confidence 9999998643
No 8
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.92 E-value=1.2e-24 Score=160.86 Aligned_cols=136 Identities=15% Similarity=0.265 Sum_probs=110.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHh-CCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHH-HHHH
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENY-LRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTET-DLTA 102 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la-~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 102 (217)
+++||||+|+|+.+..+++||+.+| +..+++|+++||++...... +... ......+..+ +..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYG--EAVL-------------AAYDEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCH--HHHH-------------HHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccc--cccc-------------CcHHHHHHHHHHHHH
Confidence 5899999999999999999999999 99999999999988653211 0000 0011122333 4455
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.++++.+.+...|+++++.+..| ++.+.|+++++ ++||||||+++ ++.+.++ + ||++++|+++++|||||
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~~g-~~~~~I~~~a~--~~dliV~G~~~--~~~~~~~---~-Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIKEG-EPVEMVLEEAK--DYNLLIIGSSE--NSFLNKI---F-ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEES-CHHHHHHHHHT--TCSEEEEECCT--TSTTSSC---C-CCTTCHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEecC-ChHHHHHHHHh--cCCEEEEeCCC--cchHHHH---h-CcHHHHHHhcCCCCEEE
Confidence 556666677777899999999999 79999999998 99999999999 9999999 9 99999999999999999
Q ss_pred Ee
Q 027929 183 LR 184 (217)
Q Consensus 183 v~ 184 (217)
||
T Consensus 137 v~ 138 (138)
T 3idf_A 137 VK 138 (138)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.92 E-value=2e-24 Score=163.76 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCCCCcEEEEEecC-ChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHH
Q 027929 21 TNGAQRKIAIAVDL-SDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETD 99 (217)
Q Consensus 21 ~~~~~~~IlVavD~-s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (217)
-.+++++||||+|+ ++.+..+++||+.+|...+++|+++||++.... . .+...+
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---------------------~----~~~~~~ 74 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---------------------T----KDEDII 74 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---------------------S----CHHHHH
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---------------------c----cHHHHH
Confidence 45789999999999 999999999999999999999999999874311 0 022223
Q ss_pred HHHHHHHHHhhhhhhcCceEEEEE--eecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 100 LTATNAKNIAEPLEEAGLQYKIHI--VKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~v~v~~~v--~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
..++.++++.+.+...|+.++..+ ..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g--~~~~~~~---~lGSv~~~vl~~a~ 148 (155)
T 3dlo_A 75 EAKETLSWAVSIIRKEGAEGEEHLLVRGK-EPPDDIVDFADEVDAIAIVIGIRK--RSPTGKL---IFGSVARDVILKAN 148 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESSS-CHHHHHHHHHHHTTCSEEEEECCE--ECTTSCE---ECCHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCC-CHHHHHHHHHHHcCCCEEEECCCC--CCCCCCE---EeccHHHHHHHhCC
Confidence 344455555666666788777653 445 899999999999999999999999 9999999 99999999999999
Q ss_pred ccEEEEe
Q 027929 178 CPVVVLR 184 (217)
Q Consensus 178 ~PVlvv~ 184 (217)
|||||||
T Consensus 149 ~PVLvVr 155 (155)
T 3dlo_A 149 KPVICIK 155 (155)
T ss_dssp SCEEEEC
T ss_pred CCEEEeC
Confidence 9999996
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.92 E-value=2.2e-24 Score=159.60 Aligned_cols=136 Identities=19% Similarity=0.204 Sum_probs=103.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
|+++||||+|+|+.+..+++||+.+|+..+++|+++||+++... .+... .. + .+.+...+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~-----~~----~----~~~~~~~~~~~~ 64 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD---YLGEP-----FF----E----EALRRRLERAEG 64 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC------------------------------CHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc---ccccc-----ch----H----HHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999874211 01100 00 0 111122222223
Q ss_pred HHHHHhhhhhhcCc-eEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 104 NAKNIAEPLEEAGL-QYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 104 ~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
.++++.+. .|+ .+++.+..| ++.+.|++++++.++||||||+++ ++.+.+. ++||++++|+++++|||||
T Consensus 65 ~l~~~~~~---~g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~--~~~~~~~---~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 65 VLEEARAL---TGVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRG--LGALGSL---FLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp HHHHHHHH---HCCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSC--TTCCSCS---SSCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHH---cCCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCC--Cchhhhh---hhccHHHHHHhcCCCCEEE
Confidence 33333322 577 777888888 799999999999999999999999 8999999 9999999999999999999
Q ss_pred Ee
Q 027929 183 LR 184 (217)
Q Consensus 183 v~ 184 (217)
||
T Consensus 136 v~ 137 (137)
T 2z08_A 136 VR 137 (137)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=7.1e-24 Score=163.20 Aligned_cols=152 Identities=22% Similarity=0.402 Sum_probs=101.2
Q ss_pred CCCCcEEEEEecCCh---------hHHHHHHHHHHHhCC---CCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCcc
Q 027929 22 NGAQRKIAIAVDLSD---------ESAYAVRWAVENYLR---PGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWG 89 (217)
Q Consensus 22 ~~~~~~IlVavD~s~---------~s~~al~~A~~la~~---~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (217)
..++++||||+|+++ .+..+++||+.++.+ .+++|+++||++..... +...... .... ..
T Consensus 2 ~~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~---~~~~~~~-~~~~----~~ 73 (175)
T 2gm3_A 2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG---FDDVDSI-YASP----ED 73 (175)
T ss_dssp ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CC-CCSH----HH
T ss_pred CCCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc---ccccccc-cCCH----HH
Confidence 346899999999999 999999999998744 58899999998643210 1000000 0000 00
Q ss_pred ccccchHHHHHHHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchh
Q 027929 90 GIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVS 169 (217)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s 169 (217)
...+.+...+..++.++++.+.+...|+.+++.+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g--~~~~~~~---~~Gsva 147 (175)
T 2gm3_A 74 FRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRG--LGRFQKV---FVGTVS 147 (175)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECC--CC-----------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCC--CChhhhh---hcCchH
Confidence 1111112222333445555555666799999999998 799999999999999999999999 9999999 999999
Q ss_pred HHHhcCCCccEEEEeCCC
Q 027929 170 DYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 170 ~~ll~~a~~PVlvv~~~~ 187 (217)
++|+++++|||||||...
T Consensus 148 ~~vl~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 148 AFCVKHAECPVMTIKRNA 165 (175)
T ss_dssp HHHHHHCSSCEEEEECCG
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 999999999999999643
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.90 E-value=1.4e-23 Score=155.91 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=101.0
Q ss_pred CcEEEEEecCChh--HHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 25 QRKIAIAVDLSDE--SAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 25 ~~~IlVavD~s~~--s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
.++||||+|+|+. +..+++||+.+|+..+++|+++||++....... ...... . ....+ +...+...
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~---~-------~~~~~-~~~~~~~~ 68 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYAS-LGMAYT---A-------ELPGM-DELREGSE 68 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC---------------------------CH-HHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccc-cccccc---c-------hhhhH-HHHHHHHH
Confidence 3799999999999 999999999999999999999999986532110 000000 0 01111 11222222
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.++++.+.+...+..+++.+..| ++.+.|++++++.++||||||+++ +.+.++ ++||++++|+++++|||||
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~---~~~~~~---~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASHR---PDITTY---LLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESSC---TTCCSC---SSCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHcCCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCCC---CCCeee---eeccHHHHHHHhCCCCEEE
Confidence 333333333332345678899999 799999999999999999999985 457788 9999999999999999999
Q ss_pred Ee
Q 027929 183 LR 184 (217)
Q Consensus 183 v~ 184 (217)
||
T Consensus 142 v~ 143 (143)
T 3fdx_A 142 VR 143 (143)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.88 E-value=3.4e-22 Score=167.26 Aligned_cols=149 Identities=14% Similarity=0.057 Sum_probs=115.1
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
++++++|||++|+|+.+..+++||+.+|+..+++|+++||++..... ... . ........+.+...+..
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~---~~~-----~----~~~~~~~~~~~~~~~~~ 71 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYD---MTT-----L----LSPDERNAMRKGVINQK 71 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGG---CTT-----T----SCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchh---hcc-----c----cChhhHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999998643211 000 0 00001122223333444
Q ss_pred HHHHHHHhhhhhhcCceEEEEEe-ecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIV-KDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~-~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
++.++++.+.+...|+.+++.+. .| ++.+.|++++++.++||||||+++ ++.+.+. ++||++++++++++|||
T Consensus 72 ~~~l~~~~~~~~~~~v~~~~~~~~~g-~~~~~i~~~a~~~~~DLiV~G~~g--~~~~~~~---~~Gs~~~~vl~~~~~PV 145 (319)
T 3olq_A 72 TAWIKQQARYYLEAGIQIDIKVIWHN-RPYEAIIEEVITDKHDLLIKMAHQ--HDKLGSL---IFTPLDWQLLRKCPAPV 145 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECS-CHHHHHHHHHHHHTCSEEEEEEBC--C--CCSC---BCCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecC-ChHHHHHHHHHhcCCCEEEEecCc--Cchhhcc---cccccHHHHHhcCCCCE
Confidence 45556666666678999999999 66 899999999999999999999999 8999998 99999999999999999
Q ss_pred EEEeCCCC
Q 027929 181 VVLRYPDD 188 (217)
Q Consensus 181 lvv~~~~~ 188 (217)
||||....
T Consensus 146 lvv~~~~~ 153 (319)
T 3olq_A 146 WMVKDKEW 153 (319)
T ss_dssp EEEESSCC
T ss_pred EEecCccc
Confidence 99997653
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.87 E-value=7e-22 Score=146.47 Aligned_cols=138 Identities=19% Similarity=0.174 Sum_probs=97.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeC-CcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQT-SVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
|+++||||+|+|+.+..+++||+.+|+..+++|+++||++. +.... .+.... .+...+.+.+..++.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~-- 68 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT-GLIDVN---------MSSMQDRISTETQKA-- 68 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC-CCEEHH---------HHHHTTCCCCHHHHH--
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc-cccccc---------hHHHHHHHHHHHHHH--
Confidence 58999999999999999999999999999999999999854 21110 010000 000111111222222
Q ss_pred HHHHHHhhhhhhcCceE-EEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 103 TNAKNIAEPLEEAGLQY-KIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v-~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
++++. ...|+.+ +..+..| ++.+.|++++++.++||||||++ . +.+.++ ||++++|+++++||||
T Consensus 69 --l~~~~---~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~--~~~~~l-----gs~~~~vl~~~~~pVl 134 (141)
T 1jmv_A 69 --LLDLA---ESVDYPISEKLSGSG-DLGQVLSDAIEQYDVDLLVTGHH-Q--DFWSKL-----MSSTRQVMNTIKIDML 134 (141)
T ss_dssp --HHHHH---HHSSSCCCCEEEEEE-CHHHHHHHHHHHTTCCEEEEEEC-C--CCHHHH-----HHHHHHHHTTCCSEEE
T ss_pred --HHHHH---HHcCCCceEEEEecC-CHHHHHHHHHHhcCCCEEEEeCC-C--chhhhh-----cchHHHHHhcCCCCEE
Confidence 22222 2246665 5667777 79999999999999999999987 2 344433 8999999999999999
Q ss_pred EEeCCC
Q 027929 182 VLRYPD 187 (217)
Q Consensus 182 vv~~~~ 187 (217)
|||..+
T Consensus 135 vv~~~~ 140 (141)
T 1jmv_A 135 VVPLRD 140 (141)
T ss_dssp EEECCC
T ss_pred EeeCCC
Confidence 999764
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.86 E-value=7.6e-22 Score=163.67 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=117.2
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
.++|+++||||+|+|+.+..+++||+.+|+..+++|+++||++....... .. ......+.+...+.
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-----~~---------~~~~~~~~~~~~~~ 83 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTV-----SG---------GIDIDHYIDEMSEK 83 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------------CCCTTHHHHHHHHH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccc-----cc---------cccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999986542210 00 00122223344455
Q ss_pred HHHHHHHHhhhhhhcCceEEE-EEe-ecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCc
Q 027929 101 TATNAKNIAEPLEEAGLQYKI-HIV-KDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVC 178 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~v~~-~v~-~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~ 178 (217)
.++.++++.+.+...|+.++. .+. .| ++.+.| ++++.++||||||+++ ++.+.+. ++||++++|+++++|
T Consensus 84 ~~~~l~~~~~~~~~~g~~~~~~~v~~~g-~~~~~I--~a~~~~~DliV~G~~g--~~~~~~~---~~Gs~~~~vl~~~~~ 155 (294)
T 3loq_A 84 AEEVLPEVAQKIEAAGIKAEVIKPFPAG-DPVVEI--IKASENYSFIAMGSRG--ASKFKKI---LLGSVSEGVLHDSKV 155 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECSSCCEE-CHHHHH--HHHHTTSSEEEEECCC--CCHHHHH---HHCCHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCCcceeEeeccC-ChhHhe--eeccCCCCEEEEcCCC--Cccccce---eeccHHHHHHhcCCC
Confidence 556666677777778999998 777 77 789998 8999999999999999 8999999 999999999999999
Q ss_pred cEEEEeCCCC
Q 027929 179 PVVVLRYPDD 188 (217)
Q Consensus 179 PVlvv~~~~~ 188 (217)
||||||....
T Consensus 156 PVlvv~~~~~ 165 (294)
T 3loq_A 156 PVYIFKHDMV 165 (294)
T ss_dssp CEEEECCCTT
T ss_pred CEEEecCccc
Confidence 9999997653
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.85 E-value=4.3e-21 Score=160.29 Aligned_cols=146 Identities=23% Similarity=0.242 Sum_probs=110.0
Q ss_pred CCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHH
Q 027929 20 MTNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETD 99 (217)
Q Consensus 20 ~~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (217)
....++++|||++|+|+.+..+++||+.+|+..+++|+++||+++... .|.... ....+.+...+
T Consensus 14 ~~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~---~~~~~~------------~~~~~~~~~~~ 78 (309)
T 3cis_A 14 SSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA---TWLEVP------------LPPGVLRWQQD 78 (309)
T ss_dssp ----CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC---CTTCCC------------CCHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc---ccccCC------------CCchhhHHHHH
Confidence 356788999999999999999999999999999999999999863211 011000 00111122233
Q ss_pred HHHHHHHHHhhhhhhc-----CceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc
Q 027929 100 LTATNAKNIAEPLEEA-----GLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH 174 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~-----~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~ 174 (217)
..++.++++.+.+... |+.+++.+..| ++.+.|+++++ ++||||||+++ ++.+.+. ++||++++|++
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~~DliV~G~~g--~~~~~~~---~~Gs~~~~vl~ 150 (309)
T 3cis_A 79 HGRHLIDDALKVVEQASLRAGPPTVHSEIVPA-AAVPTLVDMSK--DAVLMVVGCLG--SGRWPGR---LLGSVSSGLLR 150 (309)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCSCEEEEEESS-CHHHHHHHHGG--GEEEEEEESSC--TTCCTTC---CSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCceEEEEEecC-CHHHHHHHHhc--CCCEEEECCCC--Ccccccc---ccCcHHHHHHH
Confidence 3344444455555544 88999999888 79999999986 89999999999 8899999 99999999999
Q ss_pred CCCccEEEEeCCCC
Q 027929 175 HCVCPVVVLRYPDD 188 (217)
Q Consensus 175 ~a~~PVlvv~~~~~ 188 (217)
+++|||||||....
T Consensus 151 ~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 151 HAHCPVVIIHDEDS 164 (309)
T ss_dssp HCSSCEEEECTTCC
T ss_pred hCCCCEEEEcCCcc
Confidence 99999999997654
No 17
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2.5e-21 Score=160.34 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=107.5
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 21 TNGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 21 ~~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
.+.++++|||++|+|+.+..+++||+.+|+..+++|+++||+++ +... +.
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------------~~~~----~~---- 52 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------------RDHS----AA---- 52 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------------SCCH----HH----
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------------HHHH----HH----
Confidence 36678999999999999999999999999999999999999641 0111 11
Q ss_pred HHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 101 TATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 101 ~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
++++.+.+...|+.+++.+..++++.+.|++++++.++||||||+++ ++.+.+. ++||++++++++++|||
T Consensus 53 ----l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~--~~~~~~~---~~gs~~~~vl~~~~~PV 123 (290)
T 3mt0_A 53 ----LNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFP--DNPLKKA---ILTPDDWKLLRFAPCPV 123 (290)
T ss_dssp ----HHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCC--SCTTSTT---SCCHHHHHHHHHCSSCE
T ss_pred ----HHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEeccc--CCchhhc---ccCHHHHHHHhcCCCCE
Confidence 12233334457999999998665899999999999999999999999 8889999 99999999999999999
Q ss_pred EEEeCCC
Q 027929 181 VVLRYPD 187 (217)
Q Consensus 181 lvv~~~~ 187 (217)
|+||...
T Consensus 124 lvv~~~~ 130 (290)
T 3mt0_A 124 LMTKTAR 130 (290)
T ss_dssp EEECCCS
T ss_pred EEecCCC
Confidence 9999543
No 18
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.85 E-value=4.2e-21 Score=156.97 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=110.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCcc---ccccchHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWG---GIQLDSTETDLTA 102 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 102 (217)
++||||+|+|+.+..+++||+.+|+..+++|+++||++...... .+...... ..++. .+...+...+..+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 73 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARI--PELLDFGA-----LTVPVPVLRTELERALALRGE 73 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTH--HHHC------------CHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccc--ccccCchH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987542100 00000000 00000 0000222334444
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCC-cccccCCccccchhHHHhcCCCccEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIG-AVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~-~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
+.++++.+.+...|+++++.+..| ++.+.|+++ +.++||||||+++ ++ .+.+. ++||++++|+++++||||
T Consensus 74 ~~l~~~~~~~~~~g~~~~~~~~~g-~~~~~I~~~--~~~~dliV~G~~g--~~~~~~~~---~~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 74 AVLERVRQSALAAGVAVEAVLEEG-VPHEAILRR--ARAADLLVLGRSG--EAHGDGFG---GLGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEE-CHHHHHHHH--HTTCSEEEEESSC--TTSCTTCC---SCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEecC-CHHHHHHhh--ccCCCEEEEeccC--CCcccccc---ccchhHHHHHHhCCCCEE
Confidence 555566666667899999999988 799999999 7899999999999 88 88888 999999999999999999
Q ss_pred EEeCCCC
Q 027929 182 VLRYPDD 188 (217)
Q Consensus 182 vv~~~~~ 188 (217)
+||....
T Consensus 146 vv~~~~~ 152 (268)
T 3ab8_A 146 LAPGEPV 152 (268)
T ss_dssp EECSSCC
T ss_pred EECCCCC
Confidence 9997543
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.85 E-value=2.7e-21 Score=142.86 Aligned_cols=133 Identities=9% Similarity=0.030 Sum_probs=96.8
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE-eC-CcccCcccccccCCCCCCCcCCCccccccchHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR-QT-SVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDL 100 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (217)
.++++||||+|+|+.+..+++||+.+|+..+++|+++||+ +. +.... ++..... .. ..+.+...+.
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~--~~~~~~~-~~---------~~~~~~~~~~ 69 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERA--NVTFGLP-FP---------PEIKEESKKR 69 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHH--HHHHCCC-CC---------THHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEeccccccccc--ccccCCC-CC---------hHHHHHHHHH
Confidence 4789999999999999999999999999999999999998 53 11000 0100000 00 0111222233
Q ss_pred HHHHHHHHhhh--hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCc
Q 027929 101 TATNAKNIAEP--LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVC 178 (217)
Q Consensus 101 ~~~~~~~~~~~--~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~ 178 (217)
.++.++++ +. +...| .+++.+..| ++.+.|++++++.++||||||+++ + |++++|+++++|
T Consensus 70 ~~~~l~~~-~~~~~~~~~-~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~g--~------------sv~~~vl~~a~~ 132 (138)
T 1q77_A 70 IERRLREV-WEKLTGSTE-IPGVEYRIG-PLSEEVKKFVEGKGYELVVWACYP--S------------AYLCKVIDGLNL 132 (138)
T ss_dssp HHHHHHHH-HHHHHSCCC-CCCEEEECS-CHHHHHHHHHTTSCCSEEEECSCC--G------------GGTHHHHHHSSS
T ss_pred HHHHHHHH-HHHhhccCC-cceEEEEcC-CHHHHHHHHHHhcCCCEEEEeCCC--C------------chHHHHHHhCCC
Confidence 33344444 33 23456 778888888 799999999999999999999988 3 899999999999
Q ss_pred cEEEEe
Q 027929 179 PVVVLR 184 (217)
Q Consensus 179 PVlvv~ 184 (217)
||||||
T Consensus 133 PVlvv~ 138 (138)
T 1q77_A 133 ASLIVK 138 (138)
T ss_dssp EEEECC
T ss_pred ceEeeC
Confidence 999986
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=1.3e-20 Score=155.97 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=104.2
Q ss_pred CCcEEEEEecCChh-------HHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchH
Q 027929 24 AQRKIAIAVDLSDE-------SAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDST 96 (217)
Q Consensus 24 ~~~~IlVavD~s~~-------s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (217)
.+++||||+|+|+. +.+++++|..+++..+++|+++||++...... . .. . . ...+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~------~----~~----~--~-~~~~~ 195 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS------A----DP----T--F-QLSET 195 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-----------------------C--H-HHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc------c----Cc----h--h-HHHHH
Confidence 78999999999998 99999999999999999999999987543210 0 00 0 0 11122
Q ss_pred HHHHHHHHHHHHhhhhhhcCce-EEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC
Q 027929 97 ETDLTATNAKNIAEPLEEAGLQ-YKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH 175 (217)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~v~-v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~ 175 (217)
..+...+.++++. ...|+. ++..+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++
T Consensus 196 ~~~~~~~~l~~~~---~~~g~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiVmG~~g--~~~~~~~---~~Gsv~~~vl~~ 266 (290)
T 3mt0_A 196 IEARYREACRTFQ---AEYGFSDEQLHIEEG-PADVLIPRTAQKLDAVVTVIGTVA--RTGLSGA---LIGNTAEVVLDT 266 (290)
T ss_dssp HHHHHHHHHHHHH---HHHTCCTTTEEEEES-CHHHHHHHHHHHHTCSEEEEECCS--SCCGGGC---CSCHHHHHHHTT
T ss_pred HHHHHHHHHHHHH---HHcCCCcceEEEecc-CHHHHHHHHHHhcCCCEEEECCCC--CcCCcce---ecchHHHHHHhc
Confidence 2222222333333 334663 56777888 799999999999999999999999 9999999 999999999999
Q ss_pred CCccEEEEeCC
Q 027929 176 CVCPVVVLRYP 186 (217)
Q Consensus 176 a~~PVlvv~~~ 186 (217)
++||||+||+.
T Consensus 267 ~~~pVLvv~~~ 277 (290)
T 3mt0_A 267 LESDVLVLKPD 277 (290)
T ss_dssp CSSEEEEECCH
T ss_pred CCCCEEEECCC
Confidence 99999999864
No 21
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.84 E-value=4.2e-20 Score=154.27 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=106.2
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
...+++||||+|+++.+.+++++|+.++...+++|+++||++..... ... .... +...+..
T Consensus 168 ~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-------~~~--------~~~~----~~~~~~~ 228 (309)
T 3cis_A 168 HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-------EWP--------GIDW----PATQSMA 228 (309)
T ss_dssp SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-------TCS--------SCCH----HHHHHHH
T ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-------CCC--------cccH----HHHHHHH
Confidence 34578999999999999999999999999999999999997643211 000 0001 1112222
Q ss_pred HHHHHHHhhhhhh--cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCcc
Q 027929 102 ATNAKNIAEPLEE--AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCP 179 (217)
Q Consensus 102 ~~~~~~~~~~~~~--~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~P 179 (217)
++.++++.+.+.. .++.++..+..| ++.+.|+++++ ++||||||+++ ++.+.++ ++||++++|+++++||
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~adliV~G~~~--~~~~~~~---l~Gsv~~~vl~~~~~p 300 (309)
T 3cis_A 229 EQVLAERLAGWQERYPNVAITRVVVRD-QPARQLVQRSE--EAQLVVVGSRG--RGGYAGM---LVGSVGETVAQLARTP 300 (309)
T ss_dssp HHHHHHHHTTHHHHCTTSCEEEEEESS-CHHHHHHHHHT--TCSEEEEESSC--SSCCTTC---SSCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEEcC-CHHHHHHHhhC--CCCEEEECCCC--CCCcccc---ccCcHHHHHHhcCCCC
Confidence 2333344444433 478899888888 79999999997 89999999999 9999999 9999999999999999
Q ss_pred EEEEeCC
Q 027929 180 VVVLRYP 186 (217)
Q Consensus 180 Vlvv~~~ 186 (217)
|||||+.
T Consensus 301 Vlvv~~~ 307 (309)
T 3cis_A 301 VIVARES 307 (309)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9999863
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.8e-20 Score=155.34 Aligned_cols=125 Identities=22% Similarity=0.365 Sum_probs=107.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
..+++|+||+|+++.+.+++++|..+++..+++|+++||.+... .+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------------------~~ 213 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------------------KT 213 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------------------CH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------------------------HH
Confidence 67899999999999999999999999999999999999965321 01
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+..+++.+.+...|+.++..+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|+++++||||+
T Consensus 214 ~~l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~--~~~~~~~---~~Gs~~~~vl~~~~~pvLv 287 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRG--AGSVMTM---ILGSTSESVIRRSPVPVFV 287 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCC--CSCHHHH---HHHCHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCC--CCCccce---eeCcHHHHHHhcCCCCEEE
Confidence 122233444555788899988888 899999999999999999999999 9999999 9999999999999999999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||+..
T Consensus 288 v~~~~ 292 (294)
T 3loq_A 288 CKRGD 292 (294)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 99764
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.82 E-value=8.8e-20 Score=152.55 Aligned_cols=144 Identities=13% Similarity=0.139 Sum_probs=106.4
Q ss_pred CCCcEEEEEecCCh-------hHHHHHHHHHHHhCCC--CCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCcccccc
Q 027929 23 GAQRKIAIAVDLSD-------ESAYAVRWAVENYLRP--GDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQL 93 (217)
Q Consensus 23 ~~~~~IlVavD~s~-------~s~~al~~A~~la~~~--~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (217)
..+++||||+|+++ .+.+++++|..++... +++|+++||++...... +...+ . .....+
T Consensus 154 ~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~--~--------~~~~~~ 221 (319)
T 3olq_A 154 PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELP--D--------FDPNLY 221 (319)
T ss_dssp CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCT--T--------CCHHHH
T ss_pred ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCC--c--------ccHHHH
Confidence 36899999999999 5799999999999988 99999999987653211 00000 0 001111
Q ss_pred chHHHHHHHHHHHHHhhhhhhcCc-eEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHH
Q 027929 94 DSTETDLTATNAKNIAEPLEEAGL-QYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC 172 (217)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l 172 (217)
.+...+...+.++++ +...++ .++..+..| ++.+.|++++++.++||||||+++ ++.+.++ ++||++++|
T Consensus 222 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiV~G~~g--~~~~~~~---~~Gsv~~~v 292 (319)
T 3olq_A 222 NNALRGQHLIAMKEL---RQKFSIPEEKTHVKEG-LPEQVIPQVCEELNAGIVVLGILG--RTGLSAA---FLGNTAEQL 292 (319)
T ss_dssp HHHHHHHHHHHHHHH---HHHTTCCGGGEEEEES-CHHHHHHHHHHHTTEEEEEEECCS--CCSTHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHhCCCcccEEEecC-CcHHHHHHHHHHhCCCEEEEeccC--ccCCccc---cccHHHHHH
Confidence 122222222222233 333455 355677778 799999999999999999999999 9999999 999999999
Q ss_pred hcCCCccEEEEeCCC
Q 027929 173 VHHCVCPVVVLRYPD 187 (217)
Q Consensus 173 l~~a~~PVlvv~~~~ 187 (217)
+++++|||||||+.+
T Consensus 293 l~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 293 IDHIKCDLLAIKPDG 307 (319)
T ss_dssp HTTCCSEEEEECCTT
T ss_pred HhhCCCCEEEECCCC
Confidence 999999999999765
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.73 E-value=1.7e-17 Score=135.46 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=95.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
.+++||||+|+++.+.+++++|..++...+++|+++||.+.. + ..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----------------------------~----~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----------------------------A----RAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------------------------H----HHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------------------------H----HHHH
Confidence 678999999999999999999999998889999999996421 0 0112
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
..+++.+.+...|+.++..+..| ++.+.|++++++. ||||||+ + +.++ ++||++++++++++||||++
T Consensus 200 ~l~~~~~~l~~~~~~~~~~~~~g-~~~~~i~~~a~~~--dliV~G~-~-----~~~~---~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASALVLGG-DAADHLLRLQGPG--DLLALGA-P-----VRRL---VFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHCCTT--EEEEEEC-C-----CSCC---SSCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHcCCceEEEEeCC-ChHHHHHHHHHhC--CEEEECC-c-----cccc---EeccHHHHHHhcCCCCEEEe
Confidence 23344444555789999888887 7999999999876 9999997 4 5577 89999999999999999999
Q ss_pred e
Q 027929 184 R 184 (217)
Q Consensus 184 ~ 184 (217)
|
T Consensus 268 ~ 268 (268)
T 3ab8_A 268 R 268 (268)
T ss_dssp C
T ss_pred C
Confidence 6
No 25
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.31 E-value=0.15 Score=38.39 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=51.9
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++..+.++.+|+.++..|..-+...+.+.+|+++ ++++.||.|+.+ -..+.+. +...+..||+-
T Consensus 39 ~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~--aahLpGv-----------vAa~T~~PVIG 105 (181)
T 4b4k_A 39 KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGG--AAHLPGM-----------VAAKTNLPVIG 105 (181)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECS--SCCHHHH-----------HHTTCCSCEEE
T ss_pred HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccc--cccchhh-----------HHhcCCCCEEE
Confidence 3444556668999999999988878888888764 678899999877 4444333 45578899999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
||-...
T Consensus 106 VPv~s~ 111 (181)
T 4b4k_A 106 VPVQSK 111 (181)
T ss_dssp EECCCT
T ss_pred EecCCC
Confidence 997543
No 26
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=94.95 E-value=0.097 Score=39.22 Aligned_cols=69 Identities=25% Similarity=0.388 Sum_probs=50.4
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+|+++ ++++.||.|+.+ -..+.+. +...+.+||+-
T Consensus 29 ~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~--aahLpgv-----------vA~~t~~PVIg 95 (173)
T 4grd_A 29 KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGG--AAHLPGM-----------LAAKTTVPVLG 95 (173)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEES--SCCHHHH-----------HHHHCCSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccc--cccchhh-----------heecCCCCEEE
Confidence 3444555668999999999888877777777665 678999998876 4444332 44567899999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||-..
T Consensus 96 VPv~~ 100 (173)
T 4grd_A 96 VPVAS 100 (173)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 98653
No 27
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=94.77 E-value=0.15 Score=37.61 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
++....++..|+.++..+..-+...+.+.+++++...+.||.++.. ...+.+ -+...+.+||+-||-
T Consensus 16 ~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~--aa~Lpg-----------vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 16 EKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGL--AAHLPG-----------VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEES--SCCHHH-----------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCc--hhhhHH-----------HHHhccCCCEEEecC
Confidence 3444555668999999999888889999999997777999988776 443333 355678899999997
No 28
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=94.40 E-value=0.23 Score=37.08 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=50.3
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHH---HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVE---RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~---~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.++++ +.+++.||.++.. -..+.+ -+...+.+||+-
T Consensus 23 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVIg 89 (169)
T 3trh_A 23 ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGL--AAHLAG-----------TIAAHTLKPVIG 89 (169)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECS--SCCHHH-----------HHHHTCSSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECCh--hhhhHH-----------HHHhcCCCCEEE
Confidence 344445566899999999988777777777765 4778988888776 443333 355678999999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||-..
T Consensus 90 VP~~~ 94 (169)
T 3trh_A 90 VPMAG 94 (169)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 99763
No 29
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=94.39 E-value=0.26 Score=37.01 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=51.3
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.. ...+.+ -+...+.+||+-
T Consensus 29 ~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVIg 95 (174)
T 3kuu_A 29 QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGG--AAHLPG-----------MLAAKTLVPVLG 95 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEES--SCCHHH-----------HHHHTCSSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECCh--hhhhHH-----------HHHhccCCCEEE
Confidence 3444455668999999999888888888888764 578988888776 443333 355678999999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||-..
T Consensus 96 VP~~~ 100 (174)
T 3kuu_A 96 VPVQS 100 (174)
T ss_dssp EEECC
T ss_pred eeCCC
Confidence 99753
No 30
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=94.27 E-value=0.3 Score=36.51 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.+ ...+.+ -+...+.+||+-
T Consensus 28 ~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVIg 94 (170)
T 1xmp_A 28 KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGG--AAHLPG-----------MVAAKTNLPVIG 94 (170)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEES--SCCHHH-----------HHHTTCCSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCc--hhhhHH-----------HHHhccCCCEEE
Confidence 3444455668999999999888888888888875 458888888776 443333 355678899999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
||-...
T Consensus 95 VP~~~~ 100 (170)
T 1xmp_A 95 VPVQSK 100 (170)
T ss_dssp EEECCT
T ss_pred eeCCCC
Confidence 997643
No 31
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=94.23 E-value=0.27 Score=36.59 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=51.4
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.. ...+.+ -+...+.+||+-
T Consensus 22 ~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVIg 88 (166)
T 3oow_A 22 KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGG--AAHLPG-----------MVAAKTTLPVLG 88 (166)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECS--SCCHHH-----------HHHHTCSSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCc--chhhHH-----------HHHhccCCCEEE
Confidence 3444455668999999999888878888888765 468999998776 443333 355678999999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
||-...
T Consensus 89 VP~~~~ 94 (166)
T 3oow_A 89 VPVKSS 94 (166)
T ss_dssp EECCCT
T ss_pred eecCcC
Confidence 996543
No 32
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=94.09 E-value=1.1 Score=32.13 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=80.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCC-CeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPG-DAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~-~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
|++|||.+.-.-.+..+..-...+..... ...+ -+.+.... ..|.. -........++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~--VLVPa~~~--~a~~~------------------e~~~a~~~A~~ 58 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFV--LLVPAVPP--PGWVY------------------EENEVRRRAEE 58 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEE--EEEEEECC--CCSCC--------------------CHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEE--EEecCCCC--ccccc------------------ChHHHHHHHHH
Confidence 47899999877666555554455554433 3332 12221111 11110 01112223334
Q ss_pred HHHHHhhhhhhcCceEE-EEEeecCChHHHHHHHHHHcC--CCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 104 NAKNIAEPLEEAGLQYK-IHIVKDHDMKERLCLEVERLG--LSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~-~~v~~g~~~~~~I~~~a~~~~--~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.++.-.+.++..|+.++ ..+..+ ++..+|.....+.+ +|-||+-+.. ....++ |--..+.+.=+ ...||
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~-~Pl~AL~~~v~~~~~~~deiIV~T~P---h~vs~~---fh~DwasrAr~-~gvPV 130 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDI-SPLLAIEEELLAHPGAYQGIVLSTLP---PGLSRW---LRLDVHTQAER-FGLPV 130 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEES-SHHHHHHHHHHHSTTSCSEEEEEECC---TTTCHH---HHTTHHHHGGG-GSSCE
T ss_pred HHHHHHHHHHHcCCcccccccCCC-ChHHHHHHHHHhcCCCCceEEEEcCC---chHHHH---HhccHHHHHHh-cCCCE
Confidence 44555566778899999 999998 79999999999999 9999999986 345555 55566665555 88999
Q ss_pred EEEe
Q 027929 181 VVLR 184 (217)
Q Consensus 181 lvv~ 184 (217)
+-+=
T Consensus 131 lhl~ 134 (138)
T 2iel_A 131 IHVI 134 (138)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8664
No 33
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=93.84 E-value=0.22 Score=37.38 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=49.5
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHH---HHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEV---ERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a---~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++ ++.+++.||.++.. ...+.+ -+...+.+||+-
T Consensus 24 ~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVIg 90 (174)
T 3lp6_A 24 ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGG--AAHLPG-----------MVAAATPLPVIG 90 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEES--SCCHHH-----------HHHHHCSSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCc--hhhhHH-----------HHHhccCCCEEE
Confidence 34444556689999999998877777777775 45789999988776 443333 245568899999
Q ss_pred EeCCC
Q 027929 183 LRYPD 187 (217)
Q Consensus 183 v~~~~ 187 (217)
||-..
T Consensus 91 VP~~~ 95 (174)
T 3lp6_A 91 VPVPL 95 (174)
T ss_dssp EEECC
T ss_pred eeCCC
Confidence 98653
No 34
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=93.79 E-value=0.25 Score=36.67 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=51.0
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.. ...+.+. +...+.+||+-
T Consensus 20 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~--aa~Lpgv-----------vA~~t~~PVIg 86 (163)
T 3ors_A 20 QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGG--AAHLPGM-----------VASLTTLPVIG 86 (163)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEES--SCCHHHH-----------HHHHCSSCEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCc--hhhhHHH-----------HHhccCCCEEE
Confidence 3444455668999999999888888888888764 568988888776 4433332 45568899999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
||-...
T Consensus 87 VP~~~~ 92 (163)
T 3ors_A 87 VPIETK 92 (163)
T ss_dssp EEECCT
T ss_pred eeCCCC
Confidence 986543
No 35
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=93.65 E-value=0.35 Score=36.56 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=51.4
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.+ -..+.+. +...+.+||+-
T Consensus 38 ~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~--aa~Lpgv-----------vA~~t~~PVIg 104 (182)
T 1u11_A 38 RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGG--AAHLPGM-----------CAAWTRLPVLG 104 (182)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEES--SCCHHHH-----------HHHHCSSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCc--hhhhHHH-----------HHhccCCCEEE
Confidence 3444455668999999999888888888888875 458888888776 4433332 45567899999
Q ss_pred EeCCCC
Q 027929 183 LRYPDD 188 (217)
Q Consensus 183 v~~~~~ 188 (217)
||-...
T Consensus 105 VP~~~~ 110 (182)
T 1u11_A 105 VPVESR 110 (182)
T ss_dssp EEECCT
T ss_pred eeCCCC
Confidence 997643
No 36
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.63 E-value=0.34 Score=42.13 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=34.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...+|+|++.|..+|..++..+..+....+.+|+++||.
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvd 55 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD 55 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEE
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 456899999999999999999888877778899999994
No 37
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=93.54 E-value=0.22 Score=37.56 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=66.7
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
.+.++|++++.|+-.+.++++..-.+. +.+.+|+++-- ... .+-+...
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L~-~~g~~V~vv~T---~~A----------------------~~fi~~~------ 50 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIELK-SKFDEVNVIAS---TNG----------------------RKFINGE------ 50 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHT-TTCSEEEEEEC---TGG----------------------GGGSCHH------
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHH-HCCCEEEEEEC---cCH----------------------HHHhhHH------
Confidence 345899999999999999998766655 45777655432 211 1111100
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCC-hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHD-MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~-~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
..+.+ .+ .+ ....+ ..-..+..+ ..+|++|+.--. .+.+.++-.++-.+....++....+||+
T Consensus 51 -~l~~l------~~-~v----~~~~~~~~~~hi~l~--~~aD~~vVaPaT--anTlakiA~GiaDnLlt~~~la~~~pvv 114 (175)
T 3qjg_A 51 -ILKQF------CD-NY----YDEFEDPFLNHVDIA--NKHDKIIILPAT--SNTINKIANGICDNLLLTICHTAFEKLS 114 (175)
T ss_dssp -HHHHH------CS-CE----ECTTTCTTCCHHHHH--HTCSEEEEEEEC--HHHHHHHHTTCCCSHHHHHHHTCGGGEE
T ss_pred -HHHHh------cC-CE----EecCCCCcccccccc--chhCEEEEeeCC--HHHHHHHHccccCCHHHHHHHHcCCCEE
Confidence 01111 12 21 11111 111234444 468999998777 6777776444555555567777899999
Q ss_pred EEeC
Q 027929 182 VLRY 185 (217)
Q Consensus 182 vv~~ 185 (217)
++|.
T Consensus 115 l~Pa 118 (175)
T 3qjg_A 115 IFPN 118 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9984
No 38
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=93.50 E-value=0.25 Score=36.57 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH----cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER----LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVV 181 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~----~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVl 181 (217)
++....++..|+.++..|..-+...+.+.+++++ .+++.||.++.. ...+.+ -+...+.+||+
T Consensus 19 ~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~--aa~Lpg-----------vvA~~t~~PVI 85 (159)
T 3rg8_A 19 EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGR--SNALSG-----------FVDGFVKGATI 85 (159)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCS--SCCHHH-----------HHHHHSSSCEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCc--hhhhHH-----------HHHhccCCCEE
Confidence 3444455668999999999888888888888754 258999999776 443333 24556889999
Q ss_pred EEeCCC
Q 027929 182 VLRYPD 187 (217)
Q Consensus 182 vv~~~~ 187 (217)
-||-..
T Consensus 86 gVP~~~ 91 (159)
T 3rg8_A 86 ACPPPS 91 (159)
T ss_dssp ECCCCC
T ss_pred EeeCCC
Confidence 998653
No 39
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=93.37 E-value=0.3 Score=36.96 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=50.4
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
+....++..|+.++..|..-+...+.+.+++++ .+++.||.++.+ ...+.+. +...+.+||+-|
T Consensus 31 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~--aa~Lpgv-----------vA~~t~~PVIgV 97 (183)
T 1o4v_A 31 QAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGG--AAHLPGM-----------VASITHLPVIGV 97 (183)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEES--SCCHHHH-----------HHHHCSSCEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCc--ccccHHH-----------HHhccCCCEEEe
Confidence 344455668999999999887778888888764 568988888776 4434332 445688999999
Q ss_pred eCCCC
Q 027929 184 RYPDD 188 (217)
Q Consensus 184 ~~~~~ 188 (217)
|-...
T Consensus 98 P~~~~ 102 (183)
T 1o4v_A 98 PVKTS 102 (183)
T ss_dssp EECCT
T ss_pred eCCCC
Confidence 97653
No 40
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=93.35 E-value=0.78 Score=37.68 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCe-EEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDA-VVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~-l~lvhV~ 62 (217)
...+|+|++.|..+|..++..+..+....+.+ |.++|+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd 62 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFN 62 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEE
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 45789999999999999998888776667778 9999994
No 41
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=93.17 E-value=0.078 Score=40.32 Aligned_cols=115 Identities=13% Similarity=-0.007 Sum_probs=65.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
|+++|++++.|+-.+.++++....+.+ .+.+|+++-. ..... +... ..+
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T---~~A~~----fi~~-------------~~l---------- 49 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFS---PSSKN----FINT-------------DVL---------- 49 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEEC---GGGGG----TSCG-------------GGG----------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEc---hhHHH----HHHH-------------HHH----------
Confidence 568999999999999999998777754 4777765543 21100 0000 000
Q ss_pred HHHHHhhhhhhcCceEEEEEeecC-ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDH-DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~-~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+.+ .+. + .-..+. .+.. ++.+ ..+|++|+.--. .+.+.++-.++-.+....++....+|+++
T Consensus 50 --~~l------~~~-~--~d~~~~~~~~h--i~l~--~~aD~~vIaPaT--antlAKiA~GiaDnllt~~~la~~~pvvl 112 (181)
T 1g63_A 50 --KLF------CDN-L--YDEIKDPLLNH--INIV--ENHEYILVLPAS--ANTINKIANGICDNLLTTVCLTGYQKLFI 112 (181)
T ss_dssp --GGT------SSC-E--ECTTTCTTCCH--HHHH--HTCSEEEEEEEC--HHHHHHHHTTCCCSHHHHHHHHTGGGEEE
T ss_pred --HHH------hCC-c--ccccCCCCCcc--cccc--ccCCEEEEecCC--HHHHHHHHccccCcHHHHHHHHcCCCEEE
Confidence 000 011 1 000010 1111 2223 468999998777 77777764455555555666668999999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
+|.-
T Consensus 113 aPam 116 (181)
T 1g63_A 113 FPNM 116 (181)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9943
No 42
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.04 E-value=0.5 Score=36.79 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=57.9
Q ss_pred CcEEEEEecC-----ChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHH
Q 027929 25 QRKIAIAVDL-----SDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETD 99 (217)
Q Consensus 25 ~~~IlVavD~-----s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (217)
|+.|||-++. .+.+..++..|.+++.+.+.+|++|-+-+.. ...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~----------------------------~~~--- 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL----------------------------KEI--- 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC----------------------------TTT---
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH----------------------------HHH---
Confidence 5678998874 4679999999999998888899888774310 011
Q ss_pred HHHHHHHHHhhhhhhcCceEEEEEee----cCC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 100 LTATNAKNIAEPLEEAGLQYKIHIVK----DHD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 100 ~~~~~~~~~~~~~~~~~v~v~~~v~~----g~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+...|..--+.+-. +.+ ....|.+.++++++|+|++|...
T Consensus 52 ---------~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 52 ---------EKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp ---------HHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred ---------HHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11112246543333321 112 46678999999999999999765
No 43
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=91.46 E-value=0.95 Score=39.48 Aligned_cols=98 Identities=10% Similarity=0.137 Sum_probs=71.8
Q ss_pred EEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHH
Q 027929 27 KIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATN 104 (217)
Q Consensus 27 ~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (217)
++|+=+ |..-....||..|+..+.+.+.+|+.|+++++... ........++-+.
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~------------------------~~~~~r~~Fl~~s 93 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFL------------------------EAGIRQYEFMLKG 93 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGG------------------------GSCHHHHHHHHHH
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhh------------------------ccCHHHHHHHHHH
Confidence 444444 66667888999998887666778999999875421 0123344566677
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+.+.+++.|+.+ .++.| ++.+.|.+.+++.+++.|+.-...
T Consensus 94 L~~L~~~L~~~G~~L--~v~~g-~~~~~l~~l~~~~~~~~V~~~~~~ 137 (482)
T 2xry_A 94 LQELEVSLSRKKIPS--FFLRG-DPGEKISRFVKDYNAGTLVTDFSP 137 (482)
T ss_dssp HHHHHHHHHHTTCCE--EEEES-CHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHcCCcE--EEEeC-CHHHHHHHHHHHcCCCEEEEeccc
Confidence 778888888888865 45567 799999999999999999987543
No 44
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=91.17 E-value=4.6 Score=32.82 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=78.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
-+|||++.........++++..+. +...-|.++++.+... . ..+.+. +
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt-~~~G~ltv~~i~p~~~-----------------------~----~~l~~q----l 68 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDIT-YPKGSVKLLGLAGNTD-----------------------K----ENLLSQ----L 68 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-TTTCEEEEEECC---C-----------------------T----TCHHHH----H
T ss_pred CcEEEecCCchhhhhHHHHHHHhc-cCceeEEEEEEccCCC-----------------------c----cHHHHH----H
Confidence 478999988778888999988888 4566788888854321 0 100111 1
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHc-----CCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERL-----GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~-----~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
+.+.+.++.+++..-+.++...++.+++...++.+ .+..|+||-.. .. -++- -+..+..+ ++.....|
T Consensus 69 ~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~--~~-e~~~---~y~~~i~~-~~~~~~nV 141 (294)
T 3g40_A 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPE--NR-DRDE---EIREIIRK-ASMYRMGV 141 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCS--SG-GGHH---HHHHHHHH-HHHTTCEE
T ss_pred HHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCC--Ch-hhhH---HHHHHHHH-HHHhCceE
Confidence 34455667789999999998888999999988875 46899999775 22 2111 12334332 33468999
Q ss_pred EEEeCCCCC
Q 027929 181 VVLRYPDDS 189 (217)
Q Consensus 181 lvv~~~~~~ 189 (217)
++++...+.
T Consensus 142 lil~~~~~~ 150 (294)
T 3g40_A 142 LLFSKHPQA 150 (294)
T ss_dssp EEEECCTTT
T ss_pred EEEecCCcc
Confidence 999865543
No 45
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=90.57 E-value=0.98 Score=39.78 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=71.0
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 26 RKIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 26 ~~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
..+|+=. |+.-....||.+|+..+.+.+.+|+.|+++++.... .........++.+
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~----------------------~~~~~~r~~FL~~ 95 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL----------------------LSARRRQLGFLLR 95 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG----------------------GGCCHHHHHHHHH
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc----------------------cCCCHHHHHHHHH
Confidence 3444444 777788899999999887677889999997653110 0122444567777
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEe
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMG 148 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG 148 (217)
.++++.+.+++.|+.. .++.| ++.+. .+++++.+++.|+.-
T Consensus 96 sL~dL~~~L~~lG~~L--~v~~G-~p~~v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 96 GLRRLAADAAARHLPF--FLFTG-GPAEI-PALVQRLGASTLVAD 136 (506)
T ss_dssp HHHHHHHHHHHTTCCE--EEESS-CTTHH-HHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHcCCce--EEEec-ChHHH-HHHHHhcCCCEEEec
Confidence 7888888888878764 56677 67888 999999999999973
No 46
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=88.91 E-value=0.39 Score=36.81 Aligned_cols=43 Identities=5% Similarity=-0.101 Sum_probs=31.2
Q ss_pred CCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 141 GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 141 ~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+|++|+.--. .+.+.++-.++-.+....++....+||+++|.
T Consensus 81 ~aD~~vIaPaT--anTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pa 123 (194)
T 1p3y_1 81 WADIYCIIPAT--ANILGQTANGVAMNLVATTVLAHPHNTIFFPN 123 (194)
T ss_dssp HCSEEEEEEEC--HHHHHHHHTTCCSSHHHHHHHHSSSCCEEEEC
T ss_pred cCCEEEEeCCC--HHHHHHHHhhccCCHHHHHHHHcCCCEEEEEC
Confidence 48999988776 67777764445555555555668999999986
No 47
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=88.75 E-value=2.1 Score=37.95 Aligned_cols=100 Identities=8% Similarity=0.030 Sum_probs=70.9
Q ss_pred EEEEEe--cCChhHHHHHHHHHHHhCC--CCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 27 KIAIAV--DLSDESAYAVRWAVENYLR--PGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 27 ~IlVav--D~s~~s~~al~~A~~la~~--~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
.+|+=+ |..-....||..|+..+.. .+.+|+.|+++++.... ..........++-
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~---------------------~~~~~~~r~~Fl~ 88 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD---------------------WMQVGANRWRFLQ 88 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGG---------------------CTTSCHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhc---------------------ccCCCHHHHHHHH
Confidence 435544 7777888899999887744 46679999998764211 0112234445666
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.++.+.+.+++.|+.+ .++.| ++.+.|.+++++.+++.|+.-..
T Consensus 89 ~sL~~L~~~L~~~G~~L--~v~~g-~~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 89 QTLEDLDNQLRKLNSRL--FVVRG-KPAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp HHHHHHHHHHHHTTCCC--EEEES-CHHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHHHCCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEecC
Confidence 77778888888888865 44567 78999999999999999888643
No 48
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=88.39 E-value=9.9 Score=33.45 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred CcEEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 25 QRKIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 25 ~~~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
++.+|+=+ |..-....||..|+.. +.+|+.|+++++.......+. ...........++-
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~---------------~~~~~~~~r~~Fl~ 99 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFF---------------NFPKTGALRGGFLM 99 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTT---------------CCBSSCHHHHHHHH
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccc---------------cCCCCCHHHHHHHH
Confidence 44555555 7777788888887763 347999999876422100000 00112234455666
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEec
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
+.++.+.+.+++.|+.+ .++.| ++.+.|.+++++.+++.|+.-.
T Consensus 100 ~sL~~L~~~L~~~G~~L--~v~~g-~~~~~l~~l~~~~~~~~V~~~~ 143 (525)
T 2j4d_A 100 ECLVDLRKNLMKRGLNL--LIRSG-KPEEILPSLAKDFGARTVFAHK 143 (525)
T ss_dssp HHHHHHHHHHHHTTCCC--EEEES-CHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEec
Confidence 77778888888888865 44567 7999999999999999998863
No 49
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=86.58 E-value=10 Score=32.94 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=67.1
Q ss_pred EEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHH
Q 027929 27 KIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATN 104 (217)
Q Consensus 27 ~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (217)
.+|+=+ |..-....||..|+.. +.+|+.|+++++.......+ ...........++-+.
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~----------------~~~~~~~~r~~Fl~~s 66 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALKS----GLAITAVYCYDPRQFAQTHQ----------------GFAKTGPWRSNFLQQS 66 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----TSEEEEEEEECGGGGSBCTT----------------SCBSSCHHHHHHHHHH
T ss_pred cEEEEeCCCCCcchHHHHHHHHhc----CCCEEEEEEECchhhccccc----------------ccCCCCHHHHHHHHHH
Confidence 444444 7777788888887653 45888999987542210000 0111223444566777
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++.+.+.+++.|+.+ .++.| ++.+.|.+.+++.+++.|+.-..
T Consensus 67 L~~L~~~L~~~G~~L--~v~~g-~~~~~l~~l~~~~~~~~V~~~~~ 109 (489)
T 1np7_A 67 VQNLAESLQKVGNKL--LVTTG-LPEQVIPQIAKQINAKTIYYHRE 109 (489)
T ss_dssp HHHHHHHHHHTTCCE--EEEES-CHHHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHCCCcE--EEEEC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 788888888888865 44567 78999999999999998888743
No 50
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=86.43 E-value=6.6 Score=31.21 Aligned_cols=29 Identities=17% Similarity=0.034 Sum_probs=23.6
Q ss_pred cCChhHHHHHHHHHHHhCCCCC--eEEEEEEE
Q 027929 33 DLSDESAYAVRWAVENYLRPGD--AVVLLHVR 62 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~--~l~lvhV~ 62 (217)
-..+.+..|+..|.++..+ +. +|++|.+-
T Consensus 37 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G 67 (255)
T 1efv_B 37 SMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCG 67 (255)
T ss_dssp EECHHHHHHHHHHHHHHHT-TSCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 3467889999999999866 65 89988884
No 51
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=86.30 E-value=13 Score=32.44 Aligned_cols=125 Identities=14% Similarity=0.005 Sum_probs=77.2
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 26 RKIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 26 ~~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
+++||=+ |..-....||..|+.. ++|+.|+++++..... . .. ......++-+
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~-----~~v~pvfi~dp~~~~~-----~-------------~~---~~~~~~fl~~ 65 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRA-----GPVIALFVWAPEEEGH-----Y-------------HP---GRVSRWWLKN 65 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHH-----SCEEEEEEECGGGGTT-----C-------------CC---CHHHHHHHHH
T ss_pred CcEEEEECCCCccchhHHHHHHHhC-----CCEEEEEEECchhccc-----C-------------Cc---chHHHHHHHH
Confidence 3444444 7777888889888875 2577888877532100 0 00 1112236667
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
.++.+.+.+++.|+.+ .++.++++.+.|.+++++.+++.|+.-..- ...... .- ......+....|++..+
T Consensus 66 sL~~L~~~L~~~G~~L--~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~---~p~~~~---rd-~~v~~~l~~~gi~~~~~ 136 (509)
T 1u3d_A 66 SLAQLDSSLRSLGTCL--ITKRSTDSVASLLDVVKSTGASQIFFNHLY---DPLSLV---RD-HRAKDVLTAQGIAVRSF 136 (509)
T ss_dssp HHHHHHHHHHHTTCCE--EEEECSCHHHHHHHHHHHHTCCEEEEECCC---SHHHHH---HH-HHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHCCCeE--EEEeCCCHHHHHHHHHHHcCCCEEEEeccc---CHHHHH---HH-HHHHHHHHHcCcEEEEE
Confidence 7778888888888875 445544789999999999999999886432 122111 11 12234556667777776
Q ss_pred eC
Q 027929 184 RY 185 (217)
Q Consensus 184 ~~ 185 (217)
..
T Consensus 137 ~~ 138 (509)
T 1u3d_A 137 NA 138 (509)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 52
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=85.98 E-value=7.2 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred ecCChhHHHHHHHHHHHhCCCCC--eEEEEEEE
Q 027929 32 VDLSDESAYAVRWAVENYLRPGD--AVVLLHVR 62 (217)
Q Consensus 32 vD~s~~s~~al~~A~~la~~~~~--~l~lvhV~ 62 (217)
.-..+.+..|+..|.++..+ +. +|++|.+-
T Consensus 33 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G 64 (252)
T 1efp_B 33 MSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIG 64 (252)
T ss_dssp EEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeC
Confidence 33568899999999999876 66 89988884
No 53
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=85.84 E-value=1.3 Score=39.31 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=65.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||..|+..+. .+.+|+.|+|+++.... ..........++.+.+.++.+.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~---------------------~~~~~~~r~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAG---------------------TKNVGYNRMRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSC---------------------STTCCHHHHHHHHHHHHHHHHHG
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhc---------------------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 666677788888776654 45589999998754221 01122444567777778888888
Q ss_pred hhc---CceEEEEEeecCChHHHHHHHHHHcCCCEEEEec
Q 027929 113 EEA---GLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 113 ~~~---~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
.+. |+.. .+..| ++.+.|.+++++.+++.|+.-.
T Consensus 71 ~~~~~~G~~L--~v~~G-~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 71 QAATDGRGRL--LVFEG-EPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp GGSCSSSSCC--EEEES-CHHHHHHHHHHHHCEEEECEEC
T ss_pred HHhhcCCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEcc
Confidence 877 7654 55677 7899999999999999998753
No 54
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=85.65 E-value=3.5 Score=32.95 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.0
Q ss_pred EEecCChhHHHHHHHHHHHhCCCCC--eEEEEEEE
Q 027929 30 IAVDLSDESAYAVRWAVENYLRPGD--AVVLLHVR 62 (217)
Q Consensus 30 VavD~s~~s~~al~~A~~la~~~~~--~l~lvhV~ 62 (217)
+..-..+.+..++..|.++..+.+. +|++|.+-
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G 65 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVG 65 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEES
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 3445678999999999999876666 89888873
No 55
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=84.66 E-value=2 Score=36.84 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHH---HcCC-CEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVE---RLGL-SAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~---~~~~-dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
+++.+..+...|+.++..|..-+...+.+.++++ +.++ +.||.|+.+ .+.+.+ -+...+.+||
T Consensus 281 ~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~--~a~Lpg-----------vva~~t~~PV 347 (425)
T 2h31_A 281 CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGR--SNGLGP-----------VMSGNTAYPV 347 (425)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCS--SCCHHH-----------HHHHHCSSCE
T ss_pred HHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCc--ccchHh-----------HHhccCCCCE
Confidence 4455566677899999999888777777777765 4567 577777665 343333 2455678999
Q ss_pred EEEeCC
Q 027929 181 VVLRYP 186 (217)
Q Consensus 181 lvv~~~ 186 (217)
+-||..
T Consensus 348 IgvP~~ 353 (425)
T 2h31_A 348 ISCPPL 353 (425)
T ss_dssp EECCCC
T ss_pred EEeeCc
Confidence 999963
No 56
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=83.60 E-value=5.4 Score=32.85 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=31.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+.+++|++.|...|...|..+.......+.+|.++|+-
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vD 83 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVD 83 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEEC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEE
Confidence 46899999999999999998888775555678889983
No 57
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=82.86 E-value=23 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...++|+|++.|.-+|..++.|+... +.+|+.+|+.
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd 43 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTAN 43 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEE
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 45679999999999999999987652 7899999995
No 58
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=82.78 E-value=3.8 Score=35.62 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|+.-....||.+|+.. ..+ +|+.|+|+++.... ..........++-+.++.+.+.+
T Consensus 10 DLRl~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~---------------------~~~~~~~r~~fl~~sL~~L~~~L 65 (471)
T 1dnp_A 10 DLRLHDNLALAAACRN--SSA-RVLALYIATPRQWA---------------------THNMSPRQAELINAQLNGLQIAL 65 (471)
T ss_dssp CCCSTTCHHHHHHSSS--TTS-EEEEEEEECHHHHH---------------------HTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHhC--CCC-CEEEEEEECchhhc---------------------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 4444556677766543 133 89999998753210 01122444556677778888888
Q ss_pred hhcCceEEEEEe--ecCChHHHHHHHHHHcCCCEEEEec
Q 027929 113 EEAGLQYKIHIV--KDHDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 113 ~~~~v~v~~~v~--~g~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
++.|+.+.+... .| ++.+.|.+.+++.+++.|+.-.
T Consensus 66 ~~~G~~L~v~~~~~~g-~~~~~l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 66 AEKGIPLLFREVDDFV-ASVEIVKQVCAENSVTHLFYNY 103 (471)
T ss_dssp HHTTCCEEEEECSSHH-HHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHCCCeEEEEEccCCC-CHHHHHHHHHHHcCCCEEEEec
Confidence 888887655433 56 7899999999999999999843
No 59
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=81.64 E-value=5.4 Score=35.31 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=68.8
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 26 RKIAIAV--DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 26 ~~IlVav--D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
+.+||=. |+.-....||..|+. .+.+|+.|+|+++...... +. .. .............++.+
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~-----~~-~~------~~g~~~~g~~r~~Fl~~ 68 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESD-----PS-AF------SPGSSRAGVNRIRFLLE 68 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCC-----TT-SS------SSBCSSCBHHHHHHHHH
T ss_pred CcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhccc-----cc-cc------ccccccCCHHHHHHHHH
Confidence 3444444 777778888887764 3568999999875321100 00 00 00111233445567777
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEec
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGG 149 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~ 149 (217)
.+.+|.+.+.+.|+.+ .++.| ++.+.|.+.+++.+++.|+.-.
T Consensus 69 sL~~L~~~L~~~G~~L--~v~~G-~~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 69 SLKDLDSSLKKLGSRL--LVFKG-EPGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp HHHHHHHHHHHTTCCC--EEEES-CHHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHHHHcCCce--EEEEC-CHHHHHHHHHHHcCCCEEEEec
Confidence 7888888888878754 55667 7899999999999999998864
No 60
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=81.29 E-value=4.6 Score=34.64 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCC-CCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLR-PGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~-~~~~l~lvhV~ 62 (217)
...+|+|++.|..+|..++..+..+... .+.+|.++||.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvd 51 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVH 51 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEEC
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 3568999999999999999988888766 78899999994
No 61
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=80.83 E-value=11 Score=32.72 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=63.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|..-....||..|+... .+|+.|+++++.... ..........++-+.++.+.+.+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~---------------------~~~~~~~r~~fl~~sL~~L~~~L 66 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQ---------------------SADMAPARVAYLQGCLQELQQRY 66 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHT---------------------CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhc---------------------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 66667777888887643 378899998753210 01122344456667777888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++.|+.+ .++.| ++.+.|.+.+++.+++.|+.-..
T Consensus 67 ~~~G~~L--~v~~g-~~~~~l~~l~~~~~~~~v~~~~~ 101 (484)
T 1owl_A 67 QQAGSRL--LLLQG-DPQHLIPQLAQQLQAEAVYWNQD 101 (484)
T ss_dssp HHHTSCE--EEEES-CHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHCCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 8888865 44567 79999999999999999998533
No 62
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=80.48 E-value=3.3 Score=33.66 Aligned_cols=119 Identities=9% Similarity=-0.055 Sum_probs=69.9
Q ss_pred CCCCCcEEEEEecC----------ChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccc
Q 027929 21 TNGAQRKIAIAVDL----------SDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGG 90 (217)
Q Consensus 21 ~~~~~~~IlVavD~----------s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (217)
.-+.+++|=|=+.+ ..+..-++-.|-.+...++++|.++-|++..
T Consensus 151 ~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de------------------------- 205 (294)
T 3g40_A 151 GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTA------------------------- 205 (294)
T ss_dssp TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSH-------------------------
T ss_pred CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCH-------------------------
Confidence 34556777777332 2233334444444455579999999997532
Q ss_pred cccchHHHHHHHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhH
Q 027929 91 IQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSD 170 (217)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~ 170 (217)
...+.++.+..++.+.++ -+... .++.+ ....|+..+ -++||+++|-.. ...+ ...+
T Consensus 206 -----~a~~~a~~~l~~Lv~~~R-i~a~~--~vv~~--~F~~il~~s--~~ADL~flGl~~--~~df---------~~~~ 262 (294)
T 3g40_A 206 -----IQAQAAENFLQSLAELAR-IPNVK--MQVLR--ENPIKSSKL--PFASLHIFSLDP--NPDL---------DLAR 262 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHHT-CCSCE--EEEES--SCTTTSSSC--CCCSEEEEECCS--SCCH---------HHHH
T ss_pred -----HHHHHHHHHHHHHHHHhc-CCceE--EEecC--chHHHHhhC--cCCCEEEEcCCC--CCcH---------HHHH
Confidence 222223334444444333 23333 33333 456666665 679999999765 3333 3457
Q ss_pred HHhcCCCccEEEEeCCC
Q 027929 171 YCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 171 ~ll~~a~~PVlvv~~~~ 187 (217)
+++..+...||.+++.+
T Consensus 263 ~~~~~~~ssc~f~~dsg 279 (294)
T 3g40_A 263 HLMEKAGSSCIFALDSG 279 (294)
T ss_dssp HHHHHHTSEEEEEECCS
T ss_pred HHHHhcCCeEEEEecCc
Confidence 88888888899998654
No 63
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=79.90 E-value=7.2 Score=33.28 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=61.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|..-....||..|+.. + +|+.|+++++... . . ......++-+.++++.+.+
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~----------------------~-~-~~~r~~fl~~sL~~l~~~L 61 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNL----------------------K-T-TPRRRAWFLENVRALREAY 61 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHH----------------------S-S-CHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCccc----------------------c-C-CHHHHHHHHHHHHHHHHHH
Confidence 5556677778777642 2 7999999764311 0 1 2344456667777888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++.|+.+ .+..| ++.+.|.+.+++.+++.|+.-..
T Consensus 62 ~~~g~~l--~~~~g-~~~~~l~~l~~~~~~~~v~~~~~ 96 (420)
T 2j07_A 62 RARGGAL--WVLEG-LPWEKVPEAARRLKAKAVYALTS 96 (420)
T ss_dssp HHTTCCE--EEEES-CHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHCCCeE--EEEeC-CHHHHHHHHHHHcCCCEEEEecc
Confidence 8888865 44567 79999999999999999998544
No 64
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=78.35 E-value=7.5 Score=33.44 Aligned_cols=117 Identities=10% Similarity=0.077 Sum_probs=73.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHHhhhh
Q 027929 33 DLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNIAEPL 112 (217)
Q Consensus 33 D~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (217)
|..-....||.+|+.. +.+|+.|+++++..... ..........++.+.++++.+.+
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~--------------------~~~~~~~r~~Fl~~sL~~L~~~L 65 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLIN--------------------NPYKSEFAVSFMINSLLELDDEL 65 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSS--------------------CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhcc--------------------CCcCCHHHHHHHHHHHHHHHHHH
Confidence 5556667788888763 56899999987532110 00022444556677777888888
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
++.|+.+ .++.| ++.+.|.+.++ +++.|+.-..- ...... .-. .....+....|++..+..
T Consensus 66 ~~~G~~L--~v~~g-~~~~~l~~l~~--~~~~v~~~~~~---~~~~~~---rd~-~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 66 RKKGSRL--NVFFG-EAEKVVSRFFN--KVDAIYVNEDY---TPFSIS---RDE-KIRKVCEENGIEFKAYED 126 (440)
T ss_dssp HTTTCCC--EEEES-CHHHHHHHHCT--TCSEEEEECCC---SHHHHH---HHH-HHHHHHHTTTCEEEEECC
T ss_pred HHcCCeE--EEEEC-CHHHHHHHHHc--CCCEEEEeccc---ChHHHH---HHH-HHHHHHHHcCceEEEecC
Confidence 8888765 44567 78998999887 89998885432 222221 112 223455556777777654
No 65
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=78.06 E-value=21 Score=27.43 Aligned_cols=88 Identities=7% Similarity=-0.020 Sum_probs=48.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
+..++||.|-+.++.....++-.+..- ...+.+|.+|-...+. . ..+
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~~-~~~~~~I~~Vis~~~~-a---------------------------~~l---- 51 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFST-EESSVVISCVISNNAE-A---------------------------RGL---- 51 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTCC-C-CSEEEEEEEESCTT-C---------------------------THH----
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEeCCcc-h---------------------------HHH----
Confidence 455779999999998877766554321 1123455444331110 0 000
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.+.|+.+...-...- ..+.+++..++.++|+||+..-+
T Consensus 52 --------~~A~~~gIp~~~~~~~~~-~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 52 --------LIAQSYGIPTFVVKRKPL-DIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp --------HHHHHTTCCEEECCBTTB-CHHHHHHHHHHTTCSEEEESSCC
T ss_pred --------HHHHHcCCCEEEeCcccC-ChHHHHHHHHHhCCCEEEEeCCc
Confidence 112235777543211111 13678999999999999998664
No 66
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=75.84 E-value=23 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.++|+|++.|.-+|..++.++.+. +.+|+.+|+.
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~ 36 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFH 36 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEE
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEe
Confidence 468999999999999888877654 3678889885
No 67
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=75.46 E-value=31 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+...+++|++.|..+|..++.++.. .+.+|.++|+.
T Consensus 185 ~~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~ 220 (413)
T 2c5s_A 185 GVGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFH 220 (413)
T ss_dssp TTTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEE
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEe
Confidence 3467999999999999888776654 37899999985
No 68
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=75.05 E-value=24 Score=27.09 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=50.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHH
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATN 104 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (217)
|.||.|-+.++..+.+++-.+...- ..+++|.+|-...+. ..
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~-~l~~eI~~Visn~~~-----------------------------a~-------- 43 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAG-QLPCEVALLITDKPG-----------------------------AK-------- 43 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTT-CCSSEEEEEEESCSS-----------------------------SH--------
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcC-CCCcEEEEEEECCCC-----------------------------cH--------
Confidence 4689999999888888777665432 345677765552110 00
Q ss_pred HHHHhhhhhhcCceEEEEEeec-CCh---HHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKD-HDM---KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g-~~~---~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
..+.+.+.|+.+...-... .+. .+.+++..++.++|+||+.+-+
T Consensus 44 ---v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 44 ---VVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp ---HHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred ---HHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 1112233577653221111 111 3578889999999999988654
No 69
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=74.94 E-value=14 Score=28.55 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=50.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
..++.||+|.+.++.....++-.+.. ...+.+|.+|-. .+.. ..
T Consensus 9 ~~~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~Vis--~~~a---------------------------~~----- 52 (215)
T 3da8_A 9 PSAPARLVVLASGTGSLLRSLLDAAV--GDYPARVVAVGV--DREC---------------------------RA----- 52 (215)
T ss_dssp CCSSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEEEE--SSCC---------------------------HH-----
T ss_pred CCCCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEEEe--CCch---------------------------HH-----
Confidence 35567999999999888777665542 234556665533 1110 00
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKD-HD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g-~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+.+.|+.+...-... .+ ..+.+++..++.++|+||+..-+
T Consensus 53 -------~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 53 -------AEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp -------HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred -------HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 111223577654432111 01 13568888889999999998654
No 70
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=74.15 E-value=4.9 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=29.1
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLH 60 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvh 60 (217)
...++|++++.|+..+.++++.+-.+.+. +.+|+++-
T Consensus 2 ~~~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~ 38 (209)
T 3zqu_A 2 SGPERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLI 38 (209)
T ss_dssp CSCSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 34589999999999999999987777654 77765543
No 71
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=73.21 E-value=11 Score=25.19 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
...+.|.+++++++++.||+|-.-. ............-..++.|-+. ++||..+-.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~-mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLR-TDLKESAQAGKVLPLVEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCC-CCSSSCCCSSTTHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccC-CCCCcCHHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 3467899999999999999994420 0111111000223456667666 899988853
No 72
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=73.01 E-value=11 Score=30.91 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=42.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc-CCCccEEEEeCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH-HCVCPVVVLRYP 186 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~-~a~~PVlvv~~~ 186 (217)
+...+.+.|+.+.........-+..+.+.+...++|+||+... -+. +..++..+++ ...+|+.++|-+
T Consensus 47 i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG---DGT--------v~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 47 ALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG---DGT--------LNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC---HHH--------HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC---chH--------HHHHHHHHHhCCCCCcEEEecCC
Confidence 4444555687776665554333455555554567887776533 232 3445555543 467999999976
Q ss_pred CCC
Q 027929 187 DDS 189 (217)
Q Consensus 187 ~~~ 189 (217)
.-+
T Consensus 116 T~N 118 (337)
T 2qv7_A 116 TVN 118 (337)
T ss_dssp SCC
T ss_pred cHh
Confidence 544
No 73
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=72.94 E-value=32 Score=27.00 Aligned_cols=37 Identities=5% Similarity=-0.103 Sum_probs=30.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+.+|+|++.|...|...+..+..+... +.++.++|+-
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iD 77 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFID 77 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEEC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEec
Confidence 358999999999999999988877654 5678888883
No 74
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=71.70 E-value=13 Score=30.44 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=42.1
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~ 184 (217)
+.+.+.+.++.+......+..-+..+.+.+...++|+||+... -+ .+..++..+++ ...+|+.++|
T Consensus 49 i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG---DG--------Tl~~v~~~l~~~~~~~~~plgiiP 117 (332)
T 2bon_A 49 AIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG---DG--------TINEVSTALIQCEGDDIPALGILP 117 (332)
T ss_dssp HHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES---HH--------HHHHHHHHHHHCCSSCCCEEEEEE
T ss_pred HHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc---ch--------HHHHHHHHHhhcccCCCCeEEEec
Confidence 3444555688776665543233445555554557887766533 22 23456666664 4678999999
Q ss_pred CCCCC
Q 027929 185 YPDDS 189 (217)
Q Consensus 185 ~~~~~ 189 (217)
-+.-+
T Consensus 118 ~Gt~N 122 (332)
T 2bon_A 118 LGTAN 122 (332)
T ss_dssp CSSSC
T ss_pred CcCHH
Confidence 76654
No 75
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=71.34 E-value=40 Score=27.39 Aligned_cols=87 Identities=6% Similarity=0.033 Sum_probs=53.0
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
...++||+|.+.++..+..++-++..-- ..+.+|.+|-...+. + ..
T Consensus 102 ~~~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~Visn~~~---------------------------~----~~-- 147 (302)
T 3o1l_A 102 SAQKKRVVLMASRESHCLADLLHRWHSD-ELDCDIACVISNHQD---------------------------L----RS-- 147 (302)
T ss_dssp TTSCCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEEEESSST---------------------------T----HH--
T ss_pred cCCCcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEEEECcHH---------------------------H----HH--
Confidence 3456799999999988888877765432 345677665552110 0 00
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeec-CC--hHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKD-HD--MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g-~~--~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+ ....|+.+...-... .. -.+.+++..++.++|+||+.+-+
T Consensus 148 ------~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 148 ------M---VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ------H---HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ------H---HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 1 123577754321111 11 13568999999999999998664
No 76
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=71.15 E-value=37 Score=28.88 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
..++|+|++.|.-.|..++.|+... +.+|+.+|+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd 38 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLAN 38 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEE
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 3579999999999999988887653 6789999984
No 77
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=70.98 E-value=20 Score=29.10 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=53.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhC------------------CCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCC
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYL------------------RPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGG 87 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~------------------~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (217)
.+|+|++.|...|..++..+..... ..+.++.+||+.....
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~--------------------- 112 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEET--------------------- 112 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTC---------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCC---------------------
Confidence 4899999999999998887766531 1245688888832111
Q ss_pred ccccccchHHHHHHHHHHHHHhhhhhhcCceEEEEEee---cCChHHHHHHHHHHc-CCCEEEEecCC
Q 027929 88 WGGIQLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVK---DHDMKERLCLEVERL-GLSAMIMGGRG 151 (217)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~---g~~~~~~I~~~a~~~-~~dlIVlG~~~ 151 (217)
.....++.++.. ...|+.+...... +....+.+.++++.. ..+.|++|.+.
T Consensus 113 ------fpet~~fv~~~~-------~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 113 ------FPTLENFVLETS-------ERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp ------CHHHHHHHHHHH-------HHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred ------CHHHHHHHHHHH-------HHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 012222222222 2246654322211 124667777777763 67899999886
No 78
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=70.61 E-value=32 Score=25.93 Aligned_cols=33 Identities=3% Similarity=0.065 Sum_probs=27.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+|+|++.|...|..++..+..+. .+|.++|+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd 77 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTD 77 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEee
Confidence 589999999999999888877764 468888884
No 79
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=70.55 E-value=34 Score=26.28 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=50.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHH
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTAT 103 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (217)
...||+|-+.++.....++-.+..-- .+.+|.+|-...+. . ..
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~-a---------------------------~~------- 46 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRAD-A---------------------------YG------- 46 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTT-C---------------------------HH-------
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcc-h---------------------------HH-------
Confidence 35689999999988888776665432 45566555442110 0 00
Q ss_pred HHHHHhhhhhhcCceEEEEEeec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKD-HD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g-~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+...+.|+.+...-... .+ ..+.+++..++.++|+||+..-+
T Consensus 47 -----~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 47 -----LKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp -----HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred -----HHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 011223577754321111 11 13578899999999999998654
No 80
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=68.98 E-value=7 Score=31.89 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...+++|++.| -.|--++- ++.+.|.+|..+|..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~----ll~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIF----LMMKRGVEVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHH----HHHHBTCEEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHH----HHHhCCCeEEEEEEE
Confidence 44699999999 87754433 344468999999984
No 81
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=68.24 E-value=18 Score=29.11 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=44.0
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc-CCCccEEEEeCC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH-HCVCPVVVLRYP 186 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~-~a~~PVlvv~~~ 186 (217)
+...+...++.++........-+..+++.+.+ ++|+||+... -+.+ ..+...++. ...+|+.++|-+
T Consensus 31 i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG---DGTl--------~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 31 IVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG---DGTV--------FECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC---HHHH--------HHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc---chHH--------HHHHHHHhhCCCCCcEEEecCC
Confidence 33444556888877766654456667766644 7888776533 2323 344555554 367999999986
Q ss_pred CCCC
Q 027929 187 DDSR 190 (217)
Q Consensus 187 ~~~~ 190 (217)
.-+.
T Consensus 99 t~N~ 102 (304)
T 3s40_A 99 TCND 102 (304)
T ss_dssp SCCH
T ss_pred cHHH
Confidence 6543
No 82
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=67.25 E-value=8.2 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=27.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLH 60 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvh 60 (217)
++|++++.|+-.+.++++.+-.+.+. +.+|+++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 79999999999999999987777654 77775553
No 83
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=66.87 E-value=44 Score=26.11 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=49.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
.+++|.+.|...|..++-++ .+.+.+|+.++..-...... + .. ....+ +..+ ..
T Consensus 5 MKvvvl~SGGkDSs~al~~l----~~~G~eV~~L~~~~~~~~~s--~--~~------------h~~~~-e~a~----~~- 58 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWA----IKNRFSVKFLVTMVSENEES--Y--MY------------HTINA-NLTD----LQ- 58 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHH----HHTTCEEEEEEEEECC------------------------CCSS-SHHH----HH-
T ss_pred CEEEEEecCcHHHHHHHHHH----HHcCCeEEEEEEEcCCCCCc--c--cc------------CCccH-HHHH----HH-
Confidence 48999999999888666544 34577887776532211000 0 00 00001 1111 11
Q ss_pred HHHhhhhhhcCceEEEEEeecC--ChHHHHHHHHHHcCCCEEEEecC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDH--DMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~--~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+...|++....-..|. +-.+.+.+..++.+++.+|.|.-
T Consensus 59 ------A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 59 ------ARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp ------HHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred ------HHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 1224777665555552 23567778887789999999975
No 84
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=66.60 E-value=41 Score=25.69 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHH
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTA 102 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (217)
+...||.|-+.++.....++-.+..- ...+.+|.+|-...+. . ..+
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~~~-a---------------------------~~l----- 50 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDKAE-A---------------------------GGL----- 50 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESCTT-C---------------------------THH-----
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECCcc-c---------------------------HHH-----
Confidence 34568999999998887776655421 1234455555442110 0 000
Q ss_pred HHHHHHhhhhhhcCceEEEEEeec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKD-HD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g-~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+...+.|+.+...-... .+ ..+.+++..++.++|+||+..-+
T Consensus 51 -------~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 51 -------AKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -------HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -------HHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 11223577754322111 11 13678999999999999998754
No 85
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=65.32 E-value=52 Score=26.41 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
.....||+|-+.++..+..++-++..-- ..+++|.+|-...+. . ..
T Consensus 87 ~~~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~~~---------------------------~----~~-- 132 (286)
T 3n0v_A 87 PNHRPKVVIMVSKADHCLNDLLYRQRIG-QLGMDVVAVVSNHPD---------------------------L----EP-- 132 (286)
T ss_dssp TTCCCEEEEEESSCCHHHHHHHHHHHTT-SSCCEEEEEEESSST---------------------------T----HH--
T ss_pred CCCCcEEEEEEeCCCCCHHHHHHHHHCC-CCCcEEEEEEeCcHH---------------------------H----HH--
Confidence 3456799999999988888887765432 345677666552210 0 00
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+ ....|+.+...-....+ -.+.+++..++.++|+||+.+-.
T Consensus 133 ------~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 133 ------L---AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ------H---HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ------H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 1 12257775432111111 13468899999999999998664
No 86
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=63.62 E-value=32 Score=27.25 Aligned_cols=124 Identities=10% Similarity=-0.006 Sum_probs=76.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
..-|+..+.-..-..++..+++|++.|..|= -|. . ++.-.++... ...--.+.+.....-+..
T Consensus 30 SANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHP--g---ypDl~GFGRR-----------~m~~s~~el~~~v~YQiG 92 (255)
T 1v6t_A 30 SANVACGWHAGDPLVMRKTVRLAKENDVQVG-AHP--G---YPDLMGFGRR-----------YMKLTPEEARNYILYQVG 92 (255)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EEC--C---CSCTTTTTCS-----------CCCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCC--C---CCcccCCCCC-----------CCCCCHHHHHHHHHHHHH
Confidence 4455666666666778888888888776543 333 1 1110111110 111112344445555556
Q ss_pred HHhhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
.+...++..|.++...--+| ...++.|++.++..+.+|+++|..+ |...+..+...
T Consensus 93 AL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g---------------s~~~~~A~~~G 157 (255)
T 1v6t_A 93 ALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN---------------SRVADIAEEMG 157 (255)
T ss_dssp HHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT---------------CHHHHHHHHHT
T ss_pred HHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC---------------hHHHHHHHHcC
Confidence 66677778899988776655 4567899999999999999999543 45556666666
Q ss_pred ccEEE
Q 027929 178 CPVVV 182 (217)
Q Consensus 178 ~PVlv 182 (217)
+|++-
T Consensus 158 l~~~~ 162 (255)
T 1v6t_A 158 LKVAH 162 (255)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66654
No 87
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=63.42 E-value=57 Score=26.26 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHH
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLT 101 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (217)
....+||+|.+.++..+..++-++...- ..+.+|.+|-...+. . ..
T Consensus 92 ~~~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~~~---------------------------~----~~-- 137 (292)
T 3lou_A 92 VAARPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVGIVSNHPD---------------------------F----AP-- 137 (292)
T ss_dssp TTSCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEESSST---------------------------T----HH--
T ss_pred cCCCCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEEEEeCcHH---------------------------H----HH--
Confidence 3456799999999998888888765543 345676665442110 0 00
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCCh---HHHHHHHHHHcCCCEEEEecCC
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDM---KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~---~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+ ....|+.+...-....+- .+.+++..++.++|+||+.+-.
T Consensus 138 ------~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 138 ------L---AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ------H---HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ------H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 1 122577764321111111 3468899999999999998654
No 88
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=63.15 E-value=12 Score=29.60 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+.+++.+++++.|++|+.+.. ....+. .-++.++.....|++||-+..
T Consensus 53 ~~~~~~~~~~~~pDfvI~isPN---~a~PGP------~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 53 VEMALDIAEDFEPDFIVYGGPN---PAAPGP------SKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHHHHCCSEEEEECSC---TTSHHH------HHHHHHHHTSSSCEEEEEEGG
T ss_pred HHHhhhhhhhcCCCEEEEECCC---CCCCCc------hHHHHHHHhCCCCEEEEcCCc
Confidence 3345566689999999999875 334333 567889999999999997644
No 89
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=61.35 E-value=36 Score=28.46 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=28.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
....+|+|++.|...|..++..+.+ .+.+|+.||+.
T Consensus 7 ~~~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~ 42 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMK 42 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEE
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEE
Confidence 3456999999999999887776554 37889999985
No 90
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=61.29 E-value=52 Score=25.08 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+++..++.++|+||+.+-+
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEeCch
Confidence 578889999999999998654
No 91
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=60.94 E-value=71 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=27.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+|+|++.|..+|.-++..+.+. +.+|+++|+-
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd 242 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVD 242 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEE
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEe
Confidence 69999999999998888776654 6899999984
No 92
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=59.21 E-value=34 Score=27.06 Aligned_cols=123 Identities=13% Similarity=0.021 Sum_probs=73.7
Q ss_pred EEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHHHH
Q 027929 29 AIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAKNI 108 (217)
Q Consensus 29 lVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 108 (217)
-|+..+....-..++..+++|++.|..|= -|. . ++.-.++... ....-.+.+.....-+...+
T Consensus 27 NIACGfHAGDp~~M~~Tv~lA~~~gV~IG-AHP--g---ypDl~GFGRR-----------~m~~s~~el~~~v~YQiGAL 89 (252)
T 1xw8_A 27 NIACGFHAGDAQIMQACVREAIKNGVAIG-AHP--S---FPDRENFGRS-----------AMQLPPETVYAQTLYQIGAL 89 (252)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHHTCEEE-EEC--C---CC-------C-----------CCCCCHHHHHHHHHHHHHHH
T ss_pred HHhhcccCCCHHHHHHHHHHHHHcCCeee-cCC--C---CCcccCCCCC-----------CCCCCHHHHHHHHHHHHHHH
Confidence 34555555555667777788877775542 232 1 1110111110 01111234444555555666
Q ss_pred hhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCcc
Q 027929 109 AEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCP 179 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~P 179 (217)
...++..|.++...--+| ...++.|++.++..+.+|+++|.. ||...+..+...+|
T Consensus 90 ~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~---------------gs~~~~~A~~~Gl~ 154 (252)
T 1xw8_A 90 ATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA---------------GSELIRAGKQYGLT 154 (252)
T ss_dssp HHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET---------------TSHHHHHHHHTTCC
T ss_pred HHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC---------------ChHHHHHHHHcCCc
Confidence 677778899988776555 346889999999999999999944 45566777777777
Q ss_pred EEEE
Q 027929 180 VVVL 183 (217)
Q Consensus 180 Vlvv 183 (217)
++-=
T Consensus 155 ~~~E 158 (252)
T 1xw8_A 155 TREE 158 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 93
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=58.92 E-value=10 Score=29.13 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=27.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
....++|++++.|+-.+.++++.+..+.+..+.+|++|
T Consensus 16 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv 53 (206)
T 1qzu_A 16 MERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVV 53 (206)
T ss_dssp CCSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEE
T ss_pred ccCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEE
Confidence 34568999999999999999888777754256666544
No 94
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=57.01 E-value=42 Score=22.63 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=36.2
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
...|..+.+.... + .+..++.++...+|+||+...- . ...+. ...+.+-+ ...+||+++-...
T Consensus 26 ~~~~~~~~v~~~~--~-~~~a~~~l~~~~~dlii~D~~l--~-~~~g~------~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 26 DRKDIHCQLEFVD--N-GAKALYQVQQAKYDLIILDIGL--P-IANGF------EVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHTTCCEEEEEES--S-HHHHHHHHTTCCCSEEEECTTC--G-GGCHH------HHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HhcCCCeeEEEEC--C-HHHHHHHhhcCCCCEEEEeCCC--C-CCCHH------HHHHHHHhcccccCCCEEEEeCCC
Confidence 3346554333333 3 4556677778899999999764 1 12222 23344443 2468999986543
No 95
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=56.99 E-value=19 Score=27.41 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=27.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLH 60 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvh 60 (217)
++|++++.|+-.+.++++.+-.+.+..+.+|+++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999987777654477776554
No 96
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=56.48 E-value=63 Score=24.54 Aligned_cols=85 Identities=12% Similarity=0.180 Sum_probs=49.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHH
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNA 105 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (217)
+||.|-+.++..+.+++-.+..-- ..+.+|.+|-..++.. ..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~-~~~~~I~~Vvs~~~~~----------------------------~~--------- 42 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREP-NSSAQIDIVISNKAAV----------------------------AG--------- 42 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHST-TCSCEEEEEEESSTTC----------------------------HH---------
T ss_pred CeEEEEEECCchHHHHHHHHHhcC-CCCcEEEEEEeCCCCh----------------------------HH---------
Confidence 478999999988888876544322 2356666665532110 00
Q ss_pred HHHhhhhhhcCceEEEEEeec-CC---hHHHHHHHHHHcCCCEEEEecCC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKD-HD---MKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g-~~---~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+.+.|+.+...-... .+ ..+.+++..++.++|+||+.+-+
T Consensus 43 ---~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 43 ---LDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp ---HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred ---HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 011233577754321111 11 12568888899999999998654
No 97
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=56.17 E-value=91 Score=26.25 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=28.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
++|+|++.|...|..++.++.... +.+|+++|+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd 34 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTAD 34 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEE
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEe
Confidence 479999999999999998876542 6789999984
No 98
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=54.13 E-value=16 Score=24.83 Aligned_cols=55 Identities=5% Similarity=-0.171 Sum_probs=32.1
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
..|++++..-..-....+ .. .++|+|++|-.= +..+ . -.+.......+||.+++.
T Consensus 32 ~~gi~v~i~a~~~~~~~~----~~--~~~DvvLLgPQV--~y~~--------~-~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 32 LTEVRVIANSGAYGAHYD----IM--GVYDLIILAPQV--RSYY--------R-EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHTCSEEEEEEETTSCTT----TG--GGCSEEEECGGG--GGGH--------H-HHHHHHTTTTCEEEECCH
T ss_pred HCCCceEEEEcchHHHHh----hc--cCCCEEEEChHH--HHHH--------H-HHHHHhhhcCCcEEEeCH
Confidence 357776665432222222 22 368999999764 2222 2 224566667899999875
No 99
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=54.08 E-value=66 Score=25.82 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=26.5
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
...++||+|-+.++..+..++-++..-- ..+++|.+|-.
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i~~Vis 124 (288)
T 3obi_A 86 RETRRKVMLLVSQSDHCLADILYRWRVG-DLHMIPTAIVS 124 (288)
T ss_dssp TTSCEEEEEEECSCCHHHHHHHHHHHTT-SSCEEEEEEEE
T ss_pred cCCCcEEEEEEcCCCCCHHHHHHHHHCC-CCCeEEEEEEc
Confidence 3457799999999999988887765432 33445554433
No 100
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=53.96 E-value=12 Score=26.82 Aligned_cols=62 Identities=6% Similarity=-0.154 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC--CCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIG--IGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQH 193 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~--~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~ 193 (217)
..+.|.+++++++++.||+|-.-.- ....... ..-..++.|-+..++||..+-....+...+
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~---~~~~f~~~L~~~~~lpV~~~DERlTT~~A~ 104 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA---RARKFANRIHGRFGVEVKLHDERLSTVEAR 104 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH---HHHHHHHHHHHHHCCCEEEEEEECCCCCC-
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCCcCHHHHH
Confidence 4789999999999999999943100 1111011 122445555555679999997655554443
No 101
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=53.84 E-value=33 Score=24.60 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=27.1
Q ss_pred HHHHhhhhhhcCceEEEEEeecC-ChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDH-DMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~-~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+++.+...|+.++..-+... + .+.+...+ .++|.||+|+.-
T Consensus 22 A~~ia~~l~~~g~~v~~~~~~~~~~-~~~~~~~~--~~~d~ii~Gspt 66 (159)
T 3fni_A 22 AQAIINGITKTGVGVDVVDLGAAVD-LQELRELV--GRCTGLVIGMSP 66 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSCCC-HHHHHHHH--HTEEEEEEECCB
T ss_pred HHHHHHHHHHCCCeEEEEECcCcCC-HHHHHHHH--HhCCEEEEEcCc
Confidence 33445555556887766555543 3 44455444 358999999876
No 102
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=53.72 E-value=75 Score=24.53 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+++..++.++|+||+.+-+
T Consensus 91 ~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEcChh
Confidence 578889999999999998654
No 103
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=52.92 E-value=18 Score=27.78 Aligned_cols=35 Identities=9% Similarity=-0.177 Sum_probs=26.0
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
...++|++++.|+-.+.++++.+..+.+ .+ +|++|
T Consensus 17 l~~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv 51 (209)
T 1mvl_A 17 PRKPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAV 51 (209)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEE
T ss_pred cCCCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEE
Confidence 4568999999999999999888777765 34 55444
No 104
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=52.74 E-value=31 Score=27.27 Aligned_cols=125 Identities=15% Similarity=0.036 Sum_probs=76.6
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
..-|+..+.-..-..++..+++|++.|..|= -|. . ++.-.++... ...--.+.+.....-+..
T Consensus 30 SANIACGfHAGDp~~M~~tv~lA~~~gV~IG-AHP--g---ypDl~GFGRR-----------~m~~s~~el~~~v~YQiG 92 (250)
T 2dfa_A 30 SANLACGFHGGSPGRILEAVRLAKAHGVAVG-AHP--G---FPDLVGFGRR-----------EMALSPEEVYADVLYQIG 92 (250)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EEC--C---CSCTTTTTCS-----------CCCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHHHHHcCCeEe-cCC--C---CCcccCCCCC-----------CCCCCHHHHHHHHHHHHH
Confidence 4455666666666778888888888776543 333 1 1110111110 111112334444445555
Q ss_pred HHhhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
.+...++..|.++...--+| ...++.|++.++..+.+|+++|.. ||...+..+...
T Consensus 93 AL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~---------------gs~~~~~A~~~G 157 (250)
T 2dfa_A 93 ALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP---------------GTVYEEEARKAG 157 (250)
T ss_dssp HHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT---------------TSHHHHHHHHTT
T ss_pred HHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC---------------ChHHHHHHHHcC
Confidence 66666777888877665554 456889999999999999999944 455666777777
Q ss_pred ccEEEE
Q 027929 178 CPVVVL 183 (217)
Q Consensus 178 ~PVlvv 183 (217)
+|++-=
T Consensus 158 l~~~~E 163 (250)
T 2dfa_A 158 LRVVLE 163 (250)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777643
No 105
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=52.38 E-value=94 Score=25.30 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=25.1
Q ss_pred EEEEEec-----CChhHHHHHHHHHHHhCCCC-CeEEEEEE
Q 027929 27 KIAIAVD-----LSDESAYAVRWAVENYLRPG-DAVVLLHV 61 (217)
Q Consensus 27 ~IlVavD-----~s~~s~~al~~A~~la~~~~-~~l~lvhV 61 (217)
.|+|-++ ..+.+..++..|.+++. .+ .+|++|-+
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~ 41 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVI 41 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEE
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEE
Confidence 3556554 34678999999999987 56 58888766
No 106
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=52.03 E-value=39 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.+++.+...|+.++..-+...+ .+.+...+. ++|.||+|+.-
T Consensus 17 ~A~~ia~~l~~~g~~v~~~~~~~~~-~~~~~~~~~--~~d~ii~Gspt 61 (161)
T 3hly_A 17 LSQAIGRGLVKTGVAVEMVDLRAVD-PQELIEAVS--SARGIVLGTPP 61 (161)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTTCC-HHHHHHHHH--HCSEEEEECCB
T ss_pred HHHHHHHHHHhCCCeEEEEECCCCC-HHHHHHHHH--hCCEEEEEcCC
Confidence 3444555555568876655555433 444544443 58999999876
No 107
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=51.41 E-value=22 Score=26.71 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=27.3
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+.+++|+|++.|...|..++.++.. .+.+|.++|+.
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~ 39 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITIN 39 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEE
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEe
Confidence 4457999999999999888765443 46789999985
No 108
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=51.16 E-value=76 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=27.9
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
...++||+|-+.++..+..++-++..-- ..+.+|.+|-.
T Consensus 85 ~~~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i~~Vis 123 (287)
T 3nrb_A 85 RTDRKKVVIMVSKFDHCLGDLLYRHRLG-ELDMEVVGIIS 123 (287)
T ss_dssp TTCCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEE
T ss_pred cCCCcEEEEEEeCCCcCHHHHHHHHHCC-CCCeEEEEEEe
Confidence 3456799999999998888887766543 34567766554
No 109
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=50.96 E-value=60 Score=22.64 Aligned_cols=65 Identities=11% Similarity=-0.061 Sum_probs=40.7
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC--CccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC--VCPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a--~~PVlvv~~ 185 (217)
++..|.++...=. ..+.+.+++.+++.++|+|++.+.. ..... .+..+.+.+-+.. .++|++=-.
T Consensus 27 l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v~lS~~~--~~~~~-----~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 27 FTNAGFNVVNIGV--LSPQELFIKAAIETKADAILVSSLY--GQGEI-----DCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HHHTTCEEEEEEE--EECHHHHHHHHHHHTCSEEEEEECS--STHHH-----HHTTHHHHHHHTTCTTCEEEEEES
T ss_pred HHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEEEEEecC--cCcHH-----HHHHHHHHHHhcCCCCCEEEEECC
Confidence 3446776543322 3468899999999999999999875 33332 2345555444432 477766543
No 110
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=48.50 E-value=87 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+++..++.++|+||+.+-+
T Consensus 72 ~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEchhh
Confidence 478888999999999998654
No 111
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=47.76 E-value=40 Score=26.62 Aligned_cols=127 Identities=12% Similarity=0.017 Sum_probs=77.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCcccCcccccccCCCCCCCcCCCccccccchHHHHHHHHHHH
Q 027929 27 KIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDSTETDLTATNAK 106 (217)
Q Consensus 27 ~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 106 (217)
..-|+..+....-..++..+++|++.|..|= -|. . ++.-.++-.. ...--.+.+.....-+..
T Consensus 36 SANIACGfHAGDp~~M~~Tv~lA~~~gV~IG-AHP--g---ypDl~GFGRR-----------~m~~s~~el~~~v~YQiG 98 (252)
T 2x5e_A 36 QANLACGFHAGDPLTMRRAVELAVRHGVSIG-AHP--A---YPDLSGFGRR-----------SLACSAEEVHAMVLYQIG 98 (252)
T ss_dssp EEEEECSSSSCCHHHHHHHHHHHHHTTCEEE-EEC--C---CSCTTTTTCS-----------CCCCCHHHHHHHHHHHHH
T ss_pred hhhhhccccCCCHHHHHHHHHHHHHcCCeee-cCC--C---CCcccCCCCC-----------CCCCCHHHHHHHHHHHHH
Confidence 3445666666666778888888888776543 333 1 1110111110 111112334444445555
Q ss_pred HHhhhhhhcCceEEEEEeec---------CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKD---------HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV 177 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g---------~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~ 177 (217)
.+...++..|.++..+--+| ...++.|++.++..+.+|+++|-.- --||...+..+...
T Consensus 99 AL~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~~------------~~gs~~~~~A~~~G 166 (252)
T 2x5e_A 99 ALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLAL------------ADNGRELELADEAD 166 (252)
T ss_dssp HHHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECC------------SCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeCC------------CCCCHHHHHHHHcC
Confidence 66666777898887776555 3467899999999999999999551 11456666777777
Q ss_pred ccEEE
Q 027929 178 CPVVV 182 (217)
Q Consensus 178 ~PVlv 182 (217)
+|++-
T Consensus 167 l~~~~ 171 (252)
T 2x5e_A 167 VPLLF 171 (252)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77654
No 112
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=47.54 E-value=16 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEEEeecCChHHHHHHHHHHcCCCEE
Q 027929 118 QYKIHIVKDHDMKERLCLEVERLGLSAM 145 (217)
Q Consensus 118 ~v~~~v~~g~~~~~~I~~~a~~~~~dlI 145 (217)
.+..+.+..-+..++|+.|+.+.+.|-+
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 4556666666789999999999888753
No 113
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=46.17 E-value=61 Score=21.32 Aligned_cols=49 Identities=12% Similarity=-0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHHH-------cCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 130 KERLCLEVER-------LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~-------~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+..++.+++ ..+|+|++...- . ...+. ...+.+-+. ..+|++++-...
T Consensus 37 ~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~-~~~g~------~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 37 GMEAMAYLRQEGEYANASRPDLILLXLNL--P-KKDGR------EVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHHHTTCGGGGSCCCCSEEEECSSC--S-SSCHH------HHHHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHHHHHcccccccCCCCcEEEEecCC--C-cccHH------HHHHHHHcCcccccccEEEEecCC
Confidence 4556666665 689999999764 2 12122 233444443 468999886543
No 114
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.64 E-value=60 Score=21.09 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+..++.+++..+|+|++...- . ...+. ...+.+-+..++|++++-..
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~--p-~~~g~------~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIML--P-NKDGV------EVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTS--T-TTHHH------HHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEeCCC--C-CCCHH------HHHHHHHhcCCCCEEEEECC
Confidence 4556677778899999999764 2 22222 23444444567899888543
No 115
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=45.61 E-value=73 Score=23.78 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=28.4
Q ss_pred HHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.+.+.+.|.+++..-+...+-.+.+.+... .+|.||+++.-
T Consensus 37 ~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 37 EVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 334444444577877777654333556666665 49999999864
No 116
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=43.58 E-value=1.2e+02 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=26.1
Q ss_pred cEEEEEecCChh----------HHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 26 RKIAIAVDLSDE----------SAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 26 ~~IlVavD~s~~----------s~~al~~A~~la~~~~~~l~lvhV 61 (217)
.++.|++|.... .....+++..++.+.+..+..+-+
T Consensus 23 ~~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kv 68 (284)
T 3l52_A 23 GPLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKP 68 (284)
T ss_dssp CSCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEe
Confidence 468899998865 445668888888877776665555
No 117
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=42.61 E-value=25 Score=26.70 Aligned_cols=36 Identities=11% Similarity=-0.052 Sum_probs=27.1
Q ss_pred CCCcEEEEEecCChhHH-HHHHHHHHHhCCCCCeEEEE
Q 027929 23 GAQRKIAIAVDLSDESA-YAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~-~al~~A~~la~~~~~~l~lv 59 (217)
...++|++++.|+-... ++++..-.+.+ .|.+|+++
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv 41 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPF 41 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEE
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 34689999999998888 88887766654 47665543
No 118
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=41.83 E-value=51 Score=22.03 Aligned_cols=34 Identities=9% Similarity=0.233 Sum_probs=20.0
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+...|+.++.....-.+..+ +. .++|+|+.+..-
T Consensus 28 ~~~~gi~~~i~~~~~~~~~~----~~--~~~D~Ii~t~~l 61 (109)
T 2l2q_A 28 AKSKNINATIEAIAETRLSE----VV--DRFDVVLLAPQS 61 (109)
T ss_dssp HHHHTCSEEEEEECSTTHHH----HT--TTCSEEEECSCC
T ss_pred HHHCCCCeEEEEecHHHHHh----hc--CCCCEEEECCcc
Confidence 34457776654444433332 22 479999998664
No 119
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=41.76 E-value=86 Score=21.78 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+..++.+++..+|+||+...- . ...+. ...+.+-+..++|++++-....
T Consensus 60 ~~~al~~l~~~~~dlvilD~~l--~-~~~g~------~l~~~lr~~~~~~ii~~s~~~~ 109 (164)
T 3t8y_A 60 GLEAVEKAIELKPDVITMDIEM--P-NLNGI------EALKLIMKKAPTRVIMVSSLTE 109 (164)
T ss_dssp HHHHHHHHHHHCCSEEEECSSC--S-SSCHH------HHHHHHHHHSCCEEEEEESSCC
T ss_pred HHHHHHHhccCCCCEEEEeCCC--C-CCCHH------HHHHHHHhcCCceEEEEecCCc
Confidence 4456667777899999999764 2 12222 2344555556689988865433
No 120
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=41.54 E-value=79 Score=25.80 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=37.0
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchh-HHHhcCCCccEEEEeCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVS-DYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s-~~ll~~a~~PVlvv~~~ 186 (217)
+..+...|++++...-. .++ .+.. ++|.|++|+.+ --....+ .--.|+-. --++++..+||+|+-+.
T Consensus 165 a~~L~~~gI~vtli~Ds--a~~-~~m~-----~vd~VivGAd~--i~~nG~v-~nkiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 165 AKALCHLNVPVTVVLDA--AVG-YIME-----KADLVIVGAEG--VVENGGI-INKIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp HHHHHTTTCCEEEECGG--GHH-HHGG-----GCSEEEEECSE--ECTTSCE-EEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHHHcCCCEEEEehh--HHH-HHHH-----hCCEEEECceE--EecCCCe-eehhhhHHHHHHHHHhCCCEEEEecc
Confidence 34445578887544322 233 2332 79999999875 2222121 00135532 23566789999999554
No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=41.20 E-value=94 Score=24.23 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=40.5
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~ 186 (217)
+...|..+...=. .-+.+.|++.+++.++|+|.+.... ...... +..+.+.+-+. ..|||+|--..
T Consensus 147 L~~~G~~Vi~LG~--~vp~e~l~~~~~~~~~d~V~lS~l~--~~~~~~-----~~~~i~~l~~~~~~~~v~vGG~~ 213 (258)
T 2i2x_B 147 LRANGYNVVDLGR--DVPAEEVLAAVQKEKPIMLTGTALM--TTTMYA-----FKEVNDMLLENGIKIPFACGGGA 213 (258)
T ss_dssp HHHTTCEEEEEEE--ECCSHHHHHHHHHHCCSEEEEECCC--TTTTTH-----HHHHHHHHHTTTCCCCEEEESTT
T ss_pred HHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEEeec--cCCHHH-----HHHHHHHHHhcCCCCcEEEECcc
Confidence 4446776543222 2478899999999999999998765 332222 23344433332 34888876543
No 122
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=41.12 E-value=1.1e+02 Score=24.16 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=35.5
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|..+......+ +... .+++.....++|-||+.... .. ......++....+||+++-.
T Consensus 85 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~--~~----------~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 85 AARMAEEKGRQLLLADGKH-SAEEERQAIQYLLDLRCDAIMIYPRF--LS----------VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHTTCEEEEEECTT-SHHHHHHHHHHHHHTTCSEEEECCSS--SC----------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCCEEEEeCCC--CC----------hHHHHHHHHcCCCCEEEEcC
Confidence 3344445677655444333 3322 35666667788888886443 11 11223456667788887743
No 123
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=40.47 E-value=37 Score=24.55 Aligned_cols=65 Identities=11% Similarity=0.040 Sum_probs=40.1
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC--CccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC--VCPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a--~~PVlvv~~ 185 (217)
++..|.++ ..+-...+.+.|++.+++.++|+|.+.... ...... +..+.+.+-... .++|++=-.
T Consensus 42 l~~~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~--~~~~~~-----~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 42 LRDAGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILN--GAHLHL-----MKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp HHHTTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESS--SCHHHH-----HHHHHHHHHHTTCTTSCEEEEEC
T ss_pred HHHCCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeec--hhhHHH-----HHHHHHHHHhcCCCCCEEEEeCC
Confidence 33456654 333333568899999999999999998775 333322 244554443332 477777643
No 124
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=39.93 E-value=9.2 Score=27.71 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
...+.|.+++++++++.||+|-.-. .+..........-..+..+.....+||..+-..
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~-~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr 99 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKN-MNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 99 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCC-BTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeec-CCcchhHHHHHHHHHHHHHHHhhCCCEEEecCC
Confidence 4588999999999999999994320 000001000001123345555558999888543
No 125
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=39.46 E-value=74 Score=20.40 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEE
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVL 183 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv 183 (217)
.+..++.++...+|+|++...- .+...+. ...+.+-+. ..+||+++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~--~~~~~g~------~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDL--SAGQNGY------LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBC--GGGCBHH------HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCC--CCCCCHH------HHHHHHhcCccccCCCEEEE
Confidence 4456666777889999998664 2122222 234444443 57999999
No 126
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=39.14 E-value=90 Score=21.29 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~ 186 (217)
.+..++.+++..+|+||+...- . ...+. ...+.+-.. ..+||+++-..
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l--~-~~~g~------~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLM--P-EMDGY------ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCC--S-SSCHH------HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC--C-CCCHH------HHHHHHHhCCCcCCCCEEEEECC
Confidence 4556677778899999999764 2 12222 233444333 46899988643
No 127
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=39.10 E-value=15 Score=27.78 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=37.6
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcC--CCEEEEecCCCCCCcccccCCccccchhHHH-hcCCCccEEEEeCCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLG--LSAMIMGGRGIGIGAVRRSSVGRLGSVSDYC-VHHCVCPVVVLRYPDD 188 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~--~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~l-l~~a~~PVlvv~~~~~ 188 (217)
+...|+.++...-. .+-...++.+ +|.|++|+.+ -.....+ .--+|+-.-.+ +++..+|++|+-+..+
T Consensus 26 L~~~gI~vtlI~Ds------a~~~~m~~~~~~Vd~VivGAd~--v~~nG~v-~nkiGT~~~Al~Ak~~~vPf~V~a~~~k 96 (191)
T 1w2w_B 26 LVYDKIPSTLITDS------SIAYRIRTSPIPIKAAFVGADR--IVRNGDT-ANKIGTLQLAVICKQFGIKFFVVAPKTT 96 (191)
T ss_dssp HHHHTCCBEEBCGG------GHHHHHHHCSSCEEEEEECCSE--ECTTSCE-EEETTHHHHHHHHHHHTCEEEEECCGGG
T ss_pred HHHcCCCEEEEech------HHHHHHHhCCCCCCEEEECccE--EecCCCE-EecccHHHHHHHHHHcCCCEEEecccce
Confidence 34468887644322 2333344566 9999999875 3222211 00135544444 4557899999855433
No 128
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=38.58 E-value=47 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=39.8
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC---CccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~PVlvv~~ 185 (217)
++..|.++. .+-...+.+.+++.+++.++|+|.+.... ...... +..+.+.+-+.. .+||++--.
T Consensus 112 l~~~G~~v~--~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~-----~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 112 LESGGFTVY--NLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMN-----MKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHTTCEEE--ECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHH-----HHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHH-----HHHHHHHHHhcCCCCCCeEEEECC
Confidence 344566543 33334578999999999999999998765 332222 233444443332 388877644
No 129
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.29 E-value=91 Score=21.07 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-+. ..+||+++-...
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l--~-~~~g~------~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEM--P-VKTGL------EVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSC--S-SSCHH------HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhhccCCCEEEEeCCC--C-CCcHH------HHHHHHHHhCCCCeEEEEeCCC
Confidence 4566777788899999999764 2 12222 233344433 468998886543
No 130
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=37.90 E-value=31 Score=26.35 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=26.2
Q ss_pred CCcEEEEEecCChhHHH-HHHHHHHHhCCCCCeEEEEE
Q 027929 24 AQRKIAIAVDLSDESAY-AVRWAVENYLRPGDAVVLLH 60 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~-al~~A~~la~~~~~~l~lvh 60 (217)
..++|++++.|+-...+ +++..-.+.+ .|.+|+++-
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~ 40 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVV 40 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 45899999999987776 7777665554 477766543
No 131
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=36.68 E-value=25 Score=28.68 Aligned_cols=70 Identities=11% Similarity=-0.066 Sum_probs=44.8
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+.+..+-.--+.+.....++++.|++.+..+|+-.+.+ ....... .+......++++..+||.+-=+..
T Consensus 23 ~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g--~~~y~g~---~~~~~~~~~A~~~~VPVaLHlDHg 92 (306)
T 3pm6_A 23 RTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPW--AIQYADS---LLVRTAASACRAASVPITLHLDHA 92 (306)
T ss_dssp HHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHH--HHHHHTT---HHHHHHHHHHHHCSSCEEEEEEEE
T ss_pred HHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhhccH---HHHHHHHHHHHHCCCCEEEEcCCC
Confidence 334555555555555678899999999999999987665 2222221 222344566778899997754443
No 132
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=36.14 E-value=1.4e+02 Score=22.59 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCEEEEecCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+++..++.++|+||+.+-+
T Consensus 69 ~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 69 RELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEeChh
Confidence 578888999999999998654
No 133
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=36.05 E-value=1.4e+02 Score=22.90 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=36.7
Q ss_pred hhhhhhcCceEEEEEeec-CCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 109 AEPLEEAGLQYKIHIVKD-HDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g-~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
.+.+.+.|+.+.+....+ .+. ...+++.+...++|-||+.... ...+ ....+ -+. ..+||+++
T Consensus 28 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~--~~~~--------~~~~~-~~~-~~iPvV~~ 93 (304)
T 3o1i_D 28 VSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVD--PHAY--------EHNLK-SWV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSS--TTSS--------TTTHH-HHT-TTSCEEEC
T ss_pred HHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hhHH--------HHHHH-HHc-CCCCEEEe
Confidence 334444577765544443 132 2346666667899999998654 2211 12233 345 89999998
No 134
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=35.88 E-value=1.4e+02 Score=22.66 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=38.8
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|+.+......+ +... ..++.+...++|-||+.... .... .... ..+....+||+++-.
T Consensus 30 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~--~~~~--------~~~~-~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 30 FKAEAKANKYEALVATSQN-SRISEREQILEFVHLKVDAIFITTLD--DVYI--------GSAI-EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHTTCEEEEEECSS-CHHHHHHHHHHHHHTTCSEEEEECSC--TTTT--------HHHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCC--hHHH--------HHHH-HHHHHcCCCEEEecC
Confidence 3444455688766554443 3332 45666667899999997554 2211 1122 345567899999954
No 135
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=35.85 E-value=96 Score=20.61 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-....+|++++-..
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l--~-~~~g~------~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFLEIIL--S-DGDGW------TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHHHCCCSEEEEESEE--T-TEEHH------HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEeCCC--C-CCCHH------HHHHHHccCCCCCEEEEEcC
Confidence 4456677777899999998653 1 12222 23344444447899988544
No 136
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=35.82 E-value=63 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=27.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
+++++|++.|.-+|..++.++.+.. .+|+.+|+.
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~ 35 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFD 35 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEE
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEE
Confidence 4689999999999998888876643 588888884
No 137
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=35.78 E-value=93 Score=20.47 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
.+..++.++...+|+|++...- .+...+. ...+.+-....+||+++-...
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~--~~~~~g~------~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIML--CGALDGV------ETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSC--CSSSCHH------HHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEecCC--CCCCCHH------HHHHHHHhCCCCCEEEEecCC
Confidence 4456666777889999999654 2112222 223333333578999886543
No 138
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=35.75 E-value=1.2e+02 Score=21.80 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
....++.++...+|+|++...- . ...+. .....+-...++||+++-.
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~--p-~~~g~------~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKM--P-RRDGI------DAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSC--S-SSCHH------HHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCC--C-CCChH------HHHHHHHhcCCCCEEEEec
Confidence 4455666777899999999764 1 12222 3444555555679988843
No 139
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.30 E-value=1.1e+02 Score=23.59 Aligned_cols=64 Identities=6% Similarity=0.001 Sum_probs=36.2
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+.+.|..+. +....+..+ ..++.+...++|-||+.... .... ... -..+....+||+++-
T Consensus 24 i~~~a~~~g~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~~~~--------~~~-~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 24 ADKAGKDLGFEVI--KIAVPDGEKTLNAIDSLAASGAKGFVICTPD--PKLG--------SAI-VAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHTEEEE--EEECCSHHHHHHHHHHHHHTTCCEEEEECSC--GGGH--------HHH-HHHHHHTTCEEEEES
T ss_pred HHHHHHHcCCEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--chhh--------HHH-HHHHHHCCCcEEEeC
Confidence 3334444576654 333334433 35555666789999998654 2111 111 234556789999995
No 140
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=35.21 E-value=48 Score=27.92 Aligned_cols=69 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPD 187 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~ 187 (217)
.++...|++++...-. .+-...++.++|.||+|+.. -.....+ .--+|+-.-. ++++..+|++|+-+..
T Consensus 231 ~eL~~~GIpvtlI~Ds------a~~~~M~~~~Vd~ViVGAD~--V~aNG~v-~NKiGTy~lAl~Ak~~~vPfyV~ap~~ 300 (383)
T 2a0u_A 231 YECVQEDIPCTLICDG------AASSLMLNRKIDAVVVGADR--ICQNGDT-ANKIGTYNLAVSAKFHGVKLYVAAPTT 300 (383)
T ss_dssp HHHHHTTCCEEEECGG------GHHHHHHHSCCCEEEECCSE--ECTTCCE-EEETTHHHHHHHHHHTTCCEEEECCGG
T ss_pred HHHHHcCCCEEEEehh------HHHHHhhcCCCCEEEECccE--EecCCCE-eecccHHHHHHHHHHcCCCEEEeCCcc
Confidence 3344568887644322 22333445789999999875 2222111 0013554444 4456889999985533
No 141
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=34.85 E-value=28 Score=28.81 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=37.9
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~~ 188 (217)
++...|++++...-.. ++..+ .++|.||+|+.+ -.....+ .--+|+-.-. ++++..+|++|+-+..+
T Consensus 187 eL~~~GI~vtlI~Dsa--~~~~M------~~Vd~VivGAd~--V~anG~v-~NKiGT~~lAl~Ak~~~vPfyV~a~~~k 254 (338)
T 3a11_A 187 ELASYGIPVIYVVDSA--ARHYM------KMTDKVVMGADS--ITVNGAV-INKIGTALIALTAKEHRVWTMIAAETYK 254 (338)
T ss_dssp HHHHTTCCEEEECGGG--TTTTG------GGCSEEEECCSE--ECTTSCE-EEETTHHHHHHHHHHTTCEEEEECCGGG
T ss_pred HHHhCCCCEEEEehHH--HHHHH------HhCCEEEECccE--EecCCCE-eecccHHHHHHHHHHcCCCEEEecccce
Confidence 3445688876554332 23222 579999999875 2222111 0013554444 44568899999855433
No 142
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=34.83 E-value=1.6e+02 Score=22.80 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=35.9
Q ss_pred hhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccc-hhHHHhcCCCccEEEEeCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGS-VSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS-~s~~ll~~a~~PVlvv~~~ 186 (217)
+.+.+.|..+......+ +. ...+++.+...++|-||+.... .. .. ....+. . .+||+++-..
T Consensus 39 ~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~--~~----------~~~~~~~l~-~-~iPvV~i~~~ 103 (303)
T 3kke_A 39 MAASGHSTDVLLGQIDA-PPRGTQQLSRLVSEGRVDGVLLQRRE--DF----------DDDMLAAVL-E-GVPAVTINSR 103 (303)
T ss_dssp HHHHHTTCCEEEEECCS-TTHHHHHHHHHHHSCSSSEEEECCCT--TC----------CHHHHHHHH-T-TSCEEEESCC
T ss_pred HHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCC--CC----------cHHHHHHHh-C-CCCEEEECCc
Confidence 33444677766544443 22 2356777777899998887554 11 11 233343 4 8898888543
No 143
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=34.74 E-value=1.8e+02 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=25.9
Q ss_pred cEEEEEecCCh------------hHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 26 RKIAIAVDLSD------------ESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 26 ~~IlVavD~s~------------~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
..+.|++|... ......+|...++.+.+..+..+-+
T Consensus 18 s~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd~l~~~v~~~Kv 65 (290)
T 3r89_A 18 GFVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIIDQTYDVCAIYKL 65 (290)
T ss_dssp CSEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCEEEEECCChhhCchhhccccchHHHHHHHHHHHHHHhCCcceEEEe
Confidence 46788888886 2456678888888877776666555
No 144
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=34.73 E-value=1.6e+02 Score=22.74 Aligned_cols=32 Identities=3% Similarity=0.070 Sum_probs=25.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
.+|+|++.|...|..++..+.... .+|.++|+
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~i 77 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILT 77 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEEC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEe
Confidence 589999999999999888877765 35677776
No 145
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=34.67 E-value=1e+02 Score=20.57 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
.+..++.++...+|+||+...- . ...+. ...+.+-+ ...+||+++-...
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l--~-~~~g~------~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANM--P-KISGM------DLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCC--S-SSCHH------HHHHHHHTSTTTTTSCEEEEESSC
T ss_pred HHHHHHHHHcCCCCEEEEcCCC--C-CCCHH------HHHHHHHcCcccCCCCEEEEeCCC
Confidence 4556677777899999999764 2 12122 23444443 3569999986543
No 146
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=34.60 E-value=1e+02 Score=23.72 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=38.2
Q ss_pred HhhhhhhcCceEEEEEeec-CChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKD-HDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g-~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.+.+.|+.+.+....+ .+..+ .+++.+...++|-||+.... ..... .. -..+....+||+.+-
T Consensus 25 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~~~~~--------~~-~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 25 AKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPS--DTAFS--------KS-LQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCC--SSTTH--------HH-HHHHHHHTCCEEEES
T ss_pred HHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCC--HHHHH--------HH-HHHHHHCCCCEEEEc
Confidence 3334444677765444331 14433 45666667899999987554 22111 11 234556789999985
Q ss_pred CC
Q 027929 185 YP 186 (217)
Q Consensus 185 ~~ 186 (217)
..
T Consensus 94 ~~ 95 (297)
T 3rot_A 94 TR 95 (297)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 147
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=34.50 E-value=57 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE-EeCC
Q 027929 133 LCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV-LRYP 186 (217)
Q Consensus 133 I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv-v~~~ 186 (217)
+++.+.+.+.|.|++|+.+ -..|... +..+...|-++.+.||++ .|+.
T Consensus 58 ~~~~~~~sGtDai~VGS~~--vt~~~~~----~~~~v~~ik~~~~lPvil~fPP~ 106 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTD--YESFESH----MEPYVAAVKAATPLPVVLHFPPR 106 (286)
T ss_dssp HHHHHHHTTCSCEEEECSC--CSSHHHH----HHHHHHHHHHHCSSCEEEECCCB
T ss_pred HHHHHHhcCCCEEEEccCC--CCcchHH----HHHHHHHHHHhCCCCEEEECCCC
Confidence 5666667899999999433 3322332 234555555558999999 8843
No 148
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=34.38 E-value=94 Score=25.51 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHhhhhhhcCceEEEEEeecCC---hHHHHHHHHHHcCCCEEE-EecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHD---MKERLCLEVERLGLSAMI-MGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~---~~~~I~~~a~~~~~dlIV-lG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
.+.+.+...|+.+.+.+..|.. ..+.+++.+++.++|+|| +|..+ .+.++..+.-...+|++.
T Consensus 49 ~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs-------------v~D~aK~iA~~~~~p~i~ 115 (370)
T 1jq5_A 49 TIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK-------------TLDTAKAVADELDAYIVI 115 (370)
T ss_dssp HHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH-------------HHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH-------------HHHHHHHHHHhcCCCEEE
Confidence 3444445567777555555532 244677778888999988 66432 123333333345799999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
||-.
T Consensus 116 IPTT 119 (370)
T 1jq5_A 116 VPTA 119 (370)
T ss_dssp EESS
T ss_pred eccc
Confidence 9965
No 149
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=34.20 E-value=47 Score=27.87 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=38.8
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~~ 188 (217)
.++...|++++... . + .+-...++.++|.||+|+.. --....+ .--+|+-.-. ++++..+|++|+-+..+
T Consensus 227 ~eL~~~GIpvtlI~--D-s---a~~~~M~~~~Vd~ViVGAD~--V~aNG~v-~NKiGTy~lAl~Ak~~~vPfyV~ap~~k 297 (374)
T 2yvk_A 227 WELMQGGIDVTLIT--D-S---MAAHTMKEKQISAVIVGADR--IAKNGDT-ANKIGTYGLAILANAFDIPFFVAAPLST 297 (374)
T ss_dssp HHHHTTTCEEEEEC--G-G---GHHHHHHHTTCCEEEECCSE--EETTCCE-EEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred HHHHHcCCCEEEEe--h-h---HHHHHhhhcCCCEEEECccE--EecCCCE-EecccHHHHHHHHHHcCCCEEEecccce
Confidence 34455688876433 2 1 22333445789999999875 2222111 0013554433 45567899999855433
No 150
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=33.79 E-value=1.1e+02 Score=21.43 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHHHhhhhhhcCceEEEEEee-cCChHHHHHHHHHHcCCCEEEEecC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVK-DHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~-g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+++++...+...|+.++..... +..+...|-+.....-.=+||+|.+
T Consensus 23 YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 23 YAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 4555666677789999887752 4567777666665555556666643
No 151
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.19 E-value=1.6e+02 Score=22.53 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=42.3
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
...+.+.+.+.|..+......+......+++.....++|-||+.... .. ...-..+....+||+++-
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~--~~-----------~~~~~~l~~~~iPvV~~~ 95 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ--PE-----------DFRLQYLQKQNFPFLALG 95 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC--SS-----------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC--CC-----------hHHHHHHHhCCCCEEEEC
Confidence 33344445556877666555433345678888888899999987654 21 111234556788998885
Q ss_pred C
Q 027929 185 Y 185 (217)
Q Consensus 185 ~ 185 (217)
.
T Consensus 96 ~ 96 (294)
T 3qk7_A 96 R 96 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=32.93 E-value=40 Score=28.04 Aligned_cols=81 Identities=6% Similarity=-0.031 Sum_probs=50.1
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccC--C-----ccccchhHHHhcCCCc
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSS--V-----GRLGSVSDYCVHHCVC 178 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~--~-----~~~gS~s~~ll~~a~~ 178 (217)
++.+..++.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .... .+.. . ..+......+.+..++
T Consensus 11 ~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g--~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~V 88 (349)
T 3elf_A 11 EMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTG--GAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPV 88 (349)
T ss_dssp HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHH--HHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCC
Confidence 344444445665555555555678999999999999999987665 2111 1110 0 0112344567788899
Q ss_pred cEEEEeCCCCC
Q 027929 179 PVVVLRYPDDS 189 (217)
Q Consensus 179 PVlvv~~~~~~ 189 (217)
||.+-=+...+
T Consensus 89 PVaLHlDHg~~ 99 (349)
T 3elf_A 89 NVALHTDHCPK 99 (349)
T ss_dssp CEEEEECCCCG
T ss_pred CEEEECCCCCC
Confidence 99887666553
No 153
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.72 E-value=1.4e+02 Score=22.61 Aligned_cols=66 Identities=8% Similarity=-0.068 Sum_probs=35.7
Q ss_pred HhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|+.+.+....+ +.. ..+++.+...++|-||+.... .... ... -..+....+||+++-.
T Consensus 27 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~--~~~~--------~~~-~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 27 QIAEIERLGGTAIALDAGR-NDQTQVSQIQTLIAQKPDAIIEQLGN--LDVL--------NPW-LQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHHCCSEEEEESSC--HHHH--------HHH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCEEEEEcCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC--hhhh--------HHH-HHHHHHCCCcEEEecC
Confidence 3344455677665544333 332 345666666789988887543 1111 112 2334556788888843
No 154
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.71 E-value=1.1e+02 Score=20.33 Aligned_cols=51 Identities=14% Similarity=-0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 130 KERLCLEVER-LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 130 ~~~I~~~a~~-~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+..++.+++ ..+|+|++...- .....+. ...+.+-++..+||+++-....
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l--~~~~~g~------~~~~~l~~~~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 38 GEAAVEKVSGGWYPDLILMDIEL--GEGMDGV------QTALAIQQISELPVVFLTAHTE 89 (140)
T ss_dssp HHHHHHHHHTTCCCSEEEEESSC--SSSCCHH------HHHHHHHHHCCCCEEEEESSSS
T ss_pred hHHHHHHHhcCCCCCEEEEeccC--CCCCCHH------HHHHHHHhCCCCCEEEEECCCC
Confidence 3445555555 789999999763 2112222 2333443446799999865443
No 155
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=32.70 E-value=28 Score=28.06 Aligned_cols=70 Identities=6% Similarity=0.037 Sum_probs=47.1
Q ss_pred cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .....+. ..+......+++++++||.+-=+...
T Consensus 16 ~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~--~~~y~g~--~~~~~~v~~~a~~~~VPValHlDHg~ 85 (286)
T 1gvf_A 16 NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPG--TFKHIAL--EEIYALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTT--HHHHSCH--HHHHHHHHHHHHHTTSCBEEEEEEEC
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChh--HHhhcCH--HHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 3544444444454678999999999999999988776 3222221 13456777888889999887655443
No 156
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=32.62 E-value=1.5e+02 Score=22.85 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhhcCceEEEEEee-------cCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVK-------DHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~-------g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
+..+++.+.++..|+.+...+.. +.+. .+.+++.+.+.++|+|.++... .+ .....+.
T Consensus 132 ~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~~----~~---------~~l~~i~ 198 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYTG----DI---------DSFRDVV 198 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCCS----SH---------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCCC----CH---------HHHHHHH
Confidence 34455666666678877655421 1122 2344577888999999888321 11 2234566
Q ss_pred cCCCccEEEEeC
Q 027929 174 HHCVCPVVVLRY 185 (217)
Q Consensus 174 ~~a~~PVlvv~~ 185 (217)
...++||+....
T Consensus 199 ~~~~ipvva~GG 210 (273)
T 2qjg_A 199 KGCPAPVVVAGG 210 (273)
T ss_dssp HHCSSCEEEECC
T ss_pred HhCCCCEEEEeC
Confidence 667899988753
No 157
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.06 E-value=1.4e+02 Score=21.47 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=23.3
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH----cCCCEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER----LGLSAMIMG 148 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~----~~~dlIVlG 148 (217)
+.+.+.+.|..+....+-+++ .+.|.+..++ .++|+||.-
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEc
Confidence 334445568887766666645 3444444333 278998874
No 158
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=31.85 E-value=95 Score=21.03 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.+.+.+...|+.++..-+...++ + .-.++|+||+|+.-
T Consensus 15 iA~~ia~~l~~~g~~v~~~~~~~~~~-~------~l~~~d~iiig~pt 55 (138)
T 5nul_A 15 MAELIAKGIIESGKDVNTINVSDVNI-D------ELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGGCCH-H------HHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEEhhhCCH-H------HHhhCCEEEEEcCc
Confidence 34445555666687776655554332 1 12479999999875
No 159
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=31.49 E-value=1e+02 Score=23.78 Aligned_cols=38 Identities=3% Similarity=0.040 Sum_probs=29.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
+.+.|. |++++..-..| ++..+...+...+|++|++..
T Consensus 37 l~~~f~--gi~~~i~~mrg---~~~RI~aL~~gk~D~aI~S~~ 74 (231)
T 2ozz_A 37 LKAQFD--GIPFYYAHMRG---ADIRVECLLNGVYDMAVVSRL 74 (231)
T ss_dssp HHHTTT--TSCEEEEECSC---HHHHHHHHHTTSCSEEEEEHH
T ss_pred HHHHhc--CCcEEEEEccC---hHHHHHHHHcCCCCEEEEecc
Confidence 344443 88888777766 678999999999999999944
No 160
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=31.32 E-value=83 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHH---hCCCCCeEEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVEN---YLRPGDAVVLLH 60 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~l---a~~~~~~l~lvh 60 (217)
.++|++|.|+.....+|...++.. ....+..+.++.
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~ 244 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMF 244 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 378999999999999999988887 445566776553
No 161
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=31.12 E-value=1.9e+02 Score=23.61 Aligned_cols=66 Identities=6% Similarity=0.058 Sum_probs=40.5
Q ss_pred eEEEEEeecC--ChHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cCCccccchhHHHhcCCCccEEEEeCCCCCC
Q 027929 118 QYKIHIVKDH--DMKERLCLEVERLGLSAMIMGGRGIGIGAVRR-SSVGRLGSVSDYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 118 ~v~~~v~~g~--~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~-~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~ 190 (217)
.++...+.+. .+....++++++ +|+||+|-.+= ...+-- + ++..+.+. ++.++||++.|.+-....
T Consensus 155 ~i~~v~~~p~~~~~~p~~l~AI~~--AD~IvlgPGS~-~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~Nl~tq~ 223 (323)
T 2o2z_A 155 KIKRVFLTPKDTKPLREGLEAIRK--ADVIVIGPGSL-YTSVLPNL---LVPGICEA-IKQSTARKVYICNVMTQN 223 (323)
T ss_dssp CEEEEEEESTTCCCCHHHHHHHHH--CSEEEECSSCT-TTTHHHHH---TSTTHHHH-HHHCCSEEEEECCSBCCT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHh--CCEEEECCCCC-HHHhcccc---cCchHHHH-HHhCCCCEEEEcCCCCCC
Confidence 4444444442 345677777764 89999996651 222222 2 34556665 677899999998765433
No 162
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=31.05 E-value=52 Score=27.28 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=37.8
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYP 186 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~ 186 (217)
.++...|++++... . + .+-...++.++|.||+|+.. --....+ .--+|+-.-. ++++..+|++|+-+.
T Consensus 202 ~eL~~~GI~vtlI~--D-s---a~~~~M~~~~Vd~VivGAd~--V~aNG~v-~NKiGT~~lAl~Ak~~~vPfyV~ap~ 270 (347)
T 1t9k_A 202 WELMKDGIEVYVIT--D-N---MAGWLMKRGLIDAVVVGADR--IALNGDT-ANKIGTYSLAVLAKRNNIPFYVAAPV 270 (347)
T ss_dssp HHHHTTTCEEEEEC--G-G---GHHHHHHTTCCSEEEECCSE--EETTSCE-EEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHHhCCCCEEEEe--h-h---HHHHHhhcCCCCEEEECccE--EecCCCE-EecccHHHHHHHHHHcCCCEEEeccc
Confidence 34445688775433 2 1 22333445679999999875 2222111 0013554433 455678999998543
No 163
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=30.90 E-value=78 Score=27.86 Aligned_cols=44 Identities=5% Similarity=-0.030 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~ 186 (217)
++...+..|.+.++..||+-+.+ |.++..+.+.- +||++.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~s--------------G~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITET--------------GNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS--------------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEECCC
Confidence 56677888899999999988776 78888888874 5999988644
No 164
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=30.64 E-value=1.8e+02 Score=23.89 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=38.8
Q ss_pred eEEEEEeecC--ChHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cCCccccchhHHHhcCCCccEEEEeCCCCC
Q 027929 118 QYKIHIVKDH--DMKERLCLEVERLGLSAMIMGGRGIGIGAVRR-SSVGRLGSVSDYCVHHCVCPVVVLRYPDDS 189 (217)
Q Consensus 118 ~v~~~v~~g~--~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~-~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~ 189 (217)
.++...+.+. .+....+++.++ +|+||+|-.+= ...+-- + ++..+.+. ++.++||++.|.+-...
T Consensus 154 ~i~~v~l~p~~~~~~p~~l~AI~~--AD~IvlgPGS~-~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~N~~~~ 221 (332)
T 2ppv_A 154 KIDRVFLEPSDVEPMNEAIEALEQ--ADLIVLGPGSL-YTSVISNL---CVKGISEA-LLRTSAPKLYVSNVMTQ 221 (332)
T ss_dssp CEEEEEEESCCCCCCHHHHHHHHH--CSEEEECSSCC-CCCCHHHH---TSHHHHHH-HHHCCSCEEEECCSBCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHh--CCEEEECCCCC-HHHhcccc---cCchHHHH-HHhCCCCEEEEcCCCCC
Confidence 3444444432 345677777754 89999996651 222222 2 23445554 67789999999876543
No 165
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=30.38 E-value=1.1e+02 Score=21.88 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=22.6
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH----cCCCEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER----LGLSAMIMG 148 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~----~~~dlIVlG 148 (217)
+.+.+.+.|..+....+-.++ .+.|.+..++ .++|+||.-
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDE-PPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSC-HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEEc
Confidence 334455578877666555545 3334333332 279988774
No 166
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=30.19 E-value=37 Score=27.37 Aligned_cols=69 Identities=6% Similarity=0.008 Sum_probs=45.8
Q ss_pred cCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccCCccccchhHHHhc--CCCccEEEEeCCC
Q 027929 115 AGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAV-RRSSVGRLGSVSDYCVH--HCVCPVVVLRYPD 187 (217)
Q Consensus 115 ~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~-~~~~~~~~gS~s~~ll~--~a~~PVlvv~~~~ 187 (217)
.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .... .+. ..+......+++ ++++||.+-=+..
T Consensus 19 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~g~--~~~~~~v~~~A~~~~~~VPValHlDHg 90 (288)
T 3q94_A 19 GKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEG--AARHMTGF--KTVVAMVKALIEEMNITVPVAIHLDHG 90 (288)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHH--HHHHTSCH--HHHHHHHHHHHHHTTCCSCEEEEEEEE
T ss_pred CCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChh--hhhhcCCH--HHHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 4554444444554678899999999999999987765 2222 111 134556677888 8999998865444
No 167
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=30.03 E-value=1.9e+02 Score=22.30 Aligned_cols=63 Identities=8% Similarity=-0.008 Sum_probs=37.9
Q ss_pred hhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+.+.|+.+......+ +... .+++.+...++|-||+.... ..... .. -..+....+||+++-..
T Consensus 28 a~~~g~~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~--------~~-~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 28 AESLGAKVFVQSANG-NEETQMSQIENMINRGVDVLVIIPYN--GQVLS--------NV-VKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHTSCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEECSS--TTSCH--------HH-HHHHHTTTCEEEEESSC
T ss_pred HHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeCCC--hhhhH--------HH-HHHHHHCCCeEEEECCc
Confidence 344577766554433 4432 45666777899999988654 22111 12 23456778999999543
No 168
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=29.79 E-value=1.1e+02 Score=19.39 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
....++..+...+|+|++...- . ...+. ...+.+-+...+|++++-..
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l--~-~~~g~------~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLML--P-EIDGL------EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSC--S-SSCHH------HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHhCCCCEEEEeccC--C-CCCHH------HHHHHHHhCCCCCEEEEecC
Confidence 3445566667789999998663 1 12222 23344444467899988544
No 169
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=29.42 E-value=66 Score=25.09 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCCCCCCCCCCC-CCCCCCc
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHDSRDDAELHP-VPEEDDS 210 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (217)
..++.+.+.++|.|.+|.+. +-.... +-.+.+.|-+ .+.||++.|...+ .-....|.=|-| |+.++..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~---gvt~~~----~~~~v~~ik~-~~~Piil~p~~~~---~~~~gaD~il~pslln~~~~ 95 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTD---DVTEDN----VIHLMSKIRR-YPLPLVLEISNIE---SVMPGFDFYFVPTVLNSTDV 95 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSS---CCCHHH----HHHHHHHHTT-SCSCEEEECCCST---TCCTTCSEEEEEEETTBSSG
T ss_pred HHHHHHHHcCCCEEEECCcC---CcCHHH----HHHHHHHhcC-cCCCEEEecCCHH---HhhcCCCEEEEccccCCCCc
Confidence 35555567899999999864 222222 1234444444 8899999988532 223345555555 4455554
Q ss_pred cc
Q 027929 211 EY 212 (217)
Q Consensus 211 ~~ 212 (217)
+|
T Consensus 96 ~~ 97 (235)
T 3w01_A 96 AF 97 (235)
T ss_dssp GG
T ss_pred ch
Confidence 54
No 170
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.30 E-value=1.1e+02 Score=22.24 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=25.7
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHH----HcCCCEEEEec
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVE----RLGLSAMIMGG 149 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~----~~~~dlIVlG~ 149 (217)
+.+.+.+.|+.+....+.+++ .+.|.+..+ ..++|+||...
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd-~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEecC
Confidence 344455579988877777755 444544333 35689888753
No 171
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.24 E-value=82 Score=20.85 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.6
Q ss_pred hcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 114 EAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 114 ~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
.++..+.+.++....-++..+++.+..++..+++-.-
T Consensus 48 kynativvvvvddkewaekairfvkslgaqvliiiyd 84 (134)
T 2l69_A 48 KYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84 (134)
T ss_dssp CCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred HhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3566776677766666788899999999887777654
No 172
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=29.18 E-value=1.6e+02 Score=21.25 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=22.7
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHH---H-cCCCEEEEe
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVE---R-LGLSAMIMG 148 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~---~-~~~dlIVlG 148 (217)
+.+.+.+.|..+....+-.++ .+.|.+..+ + .++|+||.-
T Consensus 33 l~~~L~~~G~~v~~~~iv~Dd-~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 33 LRDSAQEAGHHVVDKAIVKEN-RYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEeC
Confidence 344455578887766665545 333333332 2 259988774
No 173
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=29.18 E-value=1.7e+02 Score=21.41 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHHHHhhhhhhcCceEEEEEeecCC------hHHHHHHHHHHcCCCEEEE
Q 027929 103 TNAKNIAEPLEEAGLQYKIHIVKDHD------MKERLCLEVERLGLSAMIM 147 (217)
Q Consensus 103 ~~~~~~~~~~~~~~v~v~~~v~~g~~------~~~~I~~~a~~~~~dlIVl 147 (217)
..+..+.+.+...|..+++.....++ ....-++.|.+.++|+.|=
T Consensus 33 ~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 33 SLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 44555666677778876444332212 2556778888999998874
No 174
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.16 E-value=1.2e+02 Score=19.59 Aligned_cols=51 Identities=6% Similarity=-0.093 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPDDS 189 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~~~ 189 (217)
.+..++.+++..+|+|++...- . ...+. ...+.+-+ ...+||+++-.....
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNL--P-DTSGL------ALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBC--S-SSBHH------HHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHHHhcCCCEEEEeCCC--C-CCCHH------HHHHHHHhhhccCCCCEEEEECCcch
Confidence 4566677778899999999764 2 12222 23344444 356899998654443
No 175
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=28.68 E-value=90 Score=27.40 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
++...++.|...++..||+-+.+ |.++..+.+.-| ||++.+-+.
T Consensus 406 ia~aa~~~A~~l~a~aIv~~T~S--------------G~TA~~vSr~RP~~PIia~T~~ 450 (520)
T 3khd_A 406 VARSAVETAESIQASLIIALTET--------------GYTARLIAKYKPSCTILALSAS 450 (520)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS--------------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------cHHHHHHHhcCCCCCEEEEcCC
Confidence 45566777888999999998776 788888888754 999988543
No 176
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=28.64 E-value=91 Score=26.04 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHhhhhhhcCceEEEEEeecCC---hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEE
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDHD---MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVV 182 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~~---~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlv 182 (217)
+++.+.+.. |+.+.+....+.. ..+.+++.+++.++|.||-=..| -...++..+.-...+|++.
T Consensus 69 ~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG------------s~~D~AK~iA~~~~~p~i~ 135 (387)
T 3uhj_A 69 ERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGG------------KTADTAKIVAIDTGARIVI 135 (387)
T ss_dssp HHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH------------HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc------------HHHHHHHHHHHhcCCCEEE
Confidence 344555666 7777445555522 24456777778899976533232 1234555555556899999
Q ss_pred EeCC
Q 027929 183 LRYP 186 (217)
Q Consensus 183 v~~~ 186 (217)
||-.
T Consensus 136 IPTT 139 (387)
T 3uhj_A 136 APTI 139 (387)
T ss_dssp CCSS
T ss_pred ecCc
Confidence 9865
No 177
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=28.57 E-value=87 Score=27.45 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~ 186 (217)
++...++.|.+.++..||+-+.+ |.++..+.+.- .||++.+-+.
T Consensus 397 ia~aa~~~A~~l~a~aIv~~T~S--------------G~tA~~iSr~RP~~PIia~T~~ 441 (511)
T 3gg8_A 397 VARAAVETAECVNAAIILALTET--------------GQTARLIAKYRPMQPILALSAS 441 (511)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS--------------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------chHHHHHHhhCCCCCEEEEcCC
Confidence 55667777888999999998776 77888888875 4999988543
No 178
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.40 E-value=1.4e+02 Score=20.15 Aligned_cols=48 Identities=8% Similarity=-0.120 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~ 186 (217)
.+..++.++...+|+||+...- .+ ..+. ...+.+-.. ..+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l--~~-~~g~------~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 40 PLDALEALKGTSVQLVISDMRM--PE-MGGE------VFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp HHHHHHHHTTSCCSEEEEESSC--SS-SCHH------HHHHHHHHHCTTSEEEEEECG
T ss_pred HHHHHHHHhcCCCCEEEEecCC--CC-CCHH------HHHHHHHHhCCCCcEEEEecC
Confidence 4566677777889999999764 21 1121 233334332 46899888543
No 179
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=28.25 E-value=1.3e+02 Score=19.82 Aligned_cols=49 Identities=6% Similarity=-0.143 Sum_probs=29.2
Q ss_pred HHHHHHHHHH------cCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 130 KERLCLEVER------LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~------~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+..++.+++ ..+|+||+...- . ...+. ...+.+-+. ..+|++++-...
T Consensus 42 ~~~a~~~l~~~~~~~~~~~dlii~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 42 GNQALDMLYGRNKENKIHPKLILLDINI--P-KMNGI------EFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHHHHHHTCTTCCCCCCSEEEEETTC--T-TSCHH------HHHHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHHHHHhcccccCCCCCEEEEecCC--C-CCCHH------HHHHHHHcCccccCCcEEEEeCCC
Confidence 4456666665 789999999764 2 12122 233444433 468999886543
No 180
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.99 E-value=1.2e+02 Score=19.51 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+..++.+++..+|+|++...- ....+. ...+.+-.. ..+||+++-...
T Consensus 35 ~~~al~~l~~~~~dlvllD~~~---p~~~g~------~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXIMM---PVMDGF------TVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECSCC---SSSCHH------HHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHHhcCCCEEEEeccC---CCCcHH------HHHHHHHhcccccCCCEEEEecCC
Confidence 4556677778899999998663 222222 233444332 468999986543
No 181
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=27.88 E-value=91 Score=27.23 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
++...++.+...++..||+-+.+ |.++..+.+.-| ||++.+-+.
T Consensus 381 ia~aa~~~A~~l~a~aIv~~T~S--------------G~tA~~isr~RP~~pIia~T~~ 425 (499)
T 3hqn_D 381 VCSSAVNSVYETKAKAMVVLSNT--------------GRSARLVAKYRPNCPIVCVTTR 425 (499)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS--------------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEcCC
Confidence 45566777888999999998876 788888888754 999988543
No 182
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=27.41 E-value=2e+02 Score=21.66 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
....++.+....+|+|++.-.- ....++ ...+.+-+...+||+++-...
T Consensus 70 ~~~al~~~~~~~~DlvllD~~l---p~~~G~------~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDLGL---PDFDGG------DVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEECCS---CHHHHH------HHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCC---CCCCHH------HHHHHHHcCCCCCEEEEECCC
Confidence 4456667778899999999663 222222 344455555679999986543
No 183
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=27.25 E-value=43 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
.++|++|.|+.....+|...++..+...+..+.++
T Consensus 195 ~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~ 229 (329)
T 4edg_A 195 TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI 229 (329)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 36899999999999999988888887777776654
No 184
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=27.22 E-value=1.8e+02 Score=22.05 Aligned_cols=41 Identities=27% Similarity=0.189 Sum_probs=25.5
Q ss_pred HhhhhhhcCceEEEEEeec-CChHHHHHHHHHHcCCCEEEEecCC
Q 027929 108 IAEPLEEAGLQYKIHIVKD-HDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g-~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.+...|.+++..-+.. .++ +.+.+..+ .+|.||++..-
T Consensus 52 ~~~~l~~~g~ev~~~dL~~~~Dv-~~~~~~l~--~aD~iv~~~P~ 93 (218)
T 3rpe_A 52 AADFLRESGHQVKITTVDQGYDI-ESEIENYL--WADTIIYQMPA 93 (218)
T ss_dssp HHHHHHHTTCCEEEEEGGGCCCH-HHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHhhCCCEEEEEECCCccCH-HHHHHHHH--hCCEEEEECCh
Confidence 3334444677877776654 343 34455553 59999999764
No 185
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=27.15 E-value=62 Score=26.83 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=38.8
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHH-HhcCCCccEEEEeCCCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDY-CVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~-ll~~a~~PVlvv~~~~~ 188 (217)
.++...|++++... . + .+-...++.++|.||+|+.+ --... + .--+|+-.-. ++++..+|++|+-+..+
T Consensus 200 ~eL~~~GI~vtlI~--D-s---a~~~~M~~~~Vd~VivGAd~--V~aNG-v-~NKiGT~~lAl~Ak~~~vPfyV~a~~~k 269 (351)
T 1t5o_A 200 WELMEDGIDVTLIT--D-S---MVGIVMQKGMVDKVIVGADR--IVRDA-V-FNKIGTYTVSVVAKHHNIPFYVAAPKAT 269 (351)
T ss_dssp HHHHHTTCCEEEEC--G-G---GHHHHHHTTCCSEEEECCSE--EETTE-E-EEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred HHHHhCCCCEEEEe--h-h---HHHHHhhcCCCCEEEECccc--hhhcC-c-ccccCHHHHHHHHHHcCCCEEEeCccce
Confidence 33445688876443 2 1 22333445679999999875 22111 1 0014554444 44567899999855433
No 186
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=27.14 E-value=71 Score=23.59 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=9.3
Q ss_pred CCCEEEEecCC
Q 027929 141 GLSAMIMGGRG 151 (217)
Q Consensus 141 ~~dlIVlG~~~ 151 (217)
++|.||+|+.-
T Consensus 78 ~aD~ii~gsP~ 88 (211)
T 1ydg_A 78 WAEAIVFSSPT 88 (211)
T ss_dssp HCSEEEEEEEE
T ss_pred HCCEEEEEcCc
Confidence 58999999864
No 187
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=27.03 E-value=92 Score=26.97 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCC
Q 027929 128 DMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYP 186 (217)
Q Consensus 128 ~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~ 186 (217)
.++...++.+.+.++..||+-+.+ |.++..+.+.- .||++.+-+.
T Consensus 357 aia~aa~~~a~~l~a~aIv~~T~s--------------G~ta~~isr~RP~~pI~a~t~~ 402 (470)
T 1e0t_A 357 AVCRGAVETAEKLDAPLIVVATQG--------------GKSARAVRKYFPDATILALTTN 402 (470)
T ss_dssp HHHHHHHHHHHHTTCSBEEEECSS--------------SHHHHHHHTTCCSSBEEEEESC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC--------------hhHHHHHHhhCCCCCEEEECCC
Confidence 356677778888999988888776 77888888875 5999988654
No 188
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.95 E-value=1.4e+02 Score=19.62 Aligned_cols=49 Identities=4% Similarity=-0.123 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-. ...+||+++-...
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMM--V-GMDGF------SICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTC--T-TSCHH------HHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHHHHHHhcCCCEEEEeccc--C-CCcHH------HHHHHHHhCccccCCcEEEEeCCC
Confidence 4556677777889999999764 1 11121 23444443 3568998885543
No 189
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.95 E-value=1.4e+02 Score=19.69 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 130 KERLCLEVER-LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~-~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
.+..++.+++ ..+|+||+...- .+...+. ...+.+-+ ...+||+++-...
T Consensus 38 ~~~a~~~l~~~~~~dlvi~D~~l--~~~~~g~------~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 38 LKKFYSIFKDLDSITLIIMDIAF--PVEKEGL------EVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp HHHHHTTTTTCCCCSEEEECSCS--SSHHHHH------HHHHHHHHSGGGTTCCEEEEESCC
T ss_pred HHHHHHHHhcCCCCcEEEEeCCC--CCCCcHH------HHHHHHHhCcccCCCCEEEEeCCC
Confidence 4556677777 899999998664 2122232 23334433 4578999986543
No 190
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=26.91 E-value=1.8e+02 Score=22.10 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=6.9
Q ss_pred cchhHHHhcCCCccEE
Q 027929 166 GSVSDYCVHHCVCPVV 181 (217)
Q Consensus 166 gS~s~~ll~~a~~PVl 181 (217)
..-..+-++....+|+
T Consensus 94 ~~e~~~~L~~~G~~V~ 109 (206)
T 1t57_A 94 EDEARDALLERGVNVY 109 (206)
T ss_dssp CHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHhCCCEEE
Confidence 3333444444444443
No 191
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.71 E-value=1.7e+02 Score=21.35 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=23.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH--cCCCEEEEec
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER--LGLSAMIMGG 149 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~--~~~dlIVlG~ 149 (217)
+.+.+...|+.+....+-+++ .+.|.+..++ .++|+||.-.
T Consensus 28 l~~~L~~~G~~v~~~~iv~Dd-~~~I~~~l~~a~~~~DlVittG 70 (172)
T 3kbq_A 28 IGNFLTYHGYQVRRGFVVMDD-LDEIGWAFRVALEVSDLVVSSG 70 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHHHCSEEEEES
T ss_pred HHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCEEEEcC
Confidence 444455579988777666645 3344433332 1489888653
No 192
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.62 E-value=1.5e+02 Score=19.97 Aligned_cols=49 Identities=4% Similarity=-0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc-CCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH-HCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~-~a~~PVlvv~~~~ 187 (217)
.+..++.+++..+|+||+...- . ...+. ...+.+-. ...+||+++-...
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHL--P-QMDGP------TLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCC--S-SSCHH------HHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCC--C-cCcHH------HHHHHHHhHCCCCeEEEEECCC
Confidence 4556667778899999999764 2 12222 22233333 3468999885433
No 193
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=26.59 E-value=1.5e+02 Score=19.92 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=24.0
Q ss_pred HcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 139 RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 139 ~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
...+|+|++...- . ...+. ...+.+-+ ...+||+++-...
T Consensus 57 ~~~~dliilD~~l--~-~~~g~------~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLNL--P-DMTGI------DILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSBC--S-SSBHH------HHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCCC--C-CCcHH------HHHHHHHhcccccCCCEEEEecCC
Confidence 6789999999763 1 22222 23344443 2468999986543
No 194
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=26.48 E-value=1.9e+02 Score=24.10 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=22.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.+|+++||| ++....+...++ -+++.|.++++++..
T Consensus 3 ~m~~~kiLI-~g~g~~a~~i~~----aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 3 AMEIKSILI-ANRGEIALRALR----TIKEMGKKAICVYSE 38 (446)
T ss_dssp TTCCCEEEE-CCCHHHHHHHHH----HHHHTTCEEEEEEEG
T ss_pred ccccceEEE-ECCCHHHHHHHH----HHHHcCCEEEEEEcC
Confidence 467889999 555554444443 334568888887754
No 195
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=26.45 E-value=1.4e+02 Score=19.60 Aligned_cols=48 Identities=15% Similarity=-0.040 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~ 186 (217)
.+..++.++...+|+||+...- . ...+. ...+.+-+ ...+|++++-..
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNL--P-DQDGV------SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCC--S-SSCHH------HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHHhCCCCEEEEeCCC--C-CCCHH------HHHHHHHhCcccCCCCEEEEecC
Confidence 4566677788899999998763 1 12222 23333433 356899998654
No 196
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=26.07 E-value=2.3e+02 Score=21.94 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=38.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|..+.+....+ +... .+++.+...++|-||+.... .... ... -..+....+||+++-.
T Consensus 25 i~~~a~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~~vdgiIi~~~~--~~~~--------~~~-~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 25 IVKQLQEAGYKTDLQYADD-DIPNQLSQIENMVTKGVKVLVIASID--GTTL--------SDV-LKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHHTCSEEEECCSS--GGGG--------HHH-HHHHHHTTCEEEEESS
T ss_pred HHHHHHHcCCEEEEeeCCC-CHHHHHHHHHHHHHcCCCEEEEEcCC--chhH--------HHH-HHHHHHCCCCEEEECC
Confidence 3344455688766555433 4432 35555556789999997554 2111 112 2345667899999954
Q ss_pred C
Q 027929 186 P 186 (217)
Q Consensus 186 ~ 186 (217)
.
T Consensus 93 ~ 93 (330)
T 3uug_A 93 L 93 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 197
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.06 E-value=2.2e+02 Score=21.73 Aligned_cols=67 Identities=6% Similarity=0.021 Sum_probs=37.9
Q ss_pred hhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+.+.+.|..+........+... .+++.+...++|-||+.... ..... .. -.-+....+||+++-..
T Consensus 27 ~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~--------~~-~~~~~~~~iPvV~~~~~ 95 (305)
T 3g1w_A 27 EDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID--PVELT--------DT-INKAVDAGIPIVLFDSG 95 (305)
T ss_dssp HHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS--TTTTH--------HH-HHHHHHTTCCEEEESSC
T ss_pred HHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC--HHHHH--------HH-HHHHHHCCCcEEEECCC
Confidence 33344468777653333334432 45566667899999987554 22111 12 23345578999998543
No 198
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=25.99 E-value=1.9e+02 Score=21.03 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-....+||+++-..
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l--~-~~~g~------~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 37 GPAALAEFDRAGADIVLLDLML--P-GMSGT------DVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp HHHHHHHHHHHCCSEEEEESSC--S-SSCHH------HHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHhccCCCEEEEECCC--C-CCCHH------HHHHHHHcCCCCCEEEEeCC
Confidence 4455666677789999999764 2 11122 23344444457899988543
No 199
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=25.68 E-value=2.4e+02 Score=22.05 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 105 AKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 105 ~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.+.+.+++.|+.+-+.+..-.+ ++++.+. +|.+=+|++.
T Consensus 76 l~~l~~~~~~~Gl~~~te~~d~~~-----~~~l~~~-vd~~kIga~~ 116 (262)
T 1zco_A 76 LRWMREAADEYGLVTVTEVMDTRH-----VELVAKY-SDILQIGARN 116 (262)
T ss_dssp HHHHHHHHHHHTCEEEEECCCGGG-----HHHHHHH-CSEEEECGGG
T ss_pred HHHHHHHHHHcCCcEEEeeCCHHh-----HHHHHhh-CCEEEECccc
Confidence 344455556679988777665422 4555666 8999999885
No 200
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.51 E-value=1.5e+02 Score=19.55 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=28.8
Q ss_pred HHHHHHHHHH----------cCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 130 KERLCLEVER----------LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~----------~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+..++.+++ ..+|+|++...- . ...+. ...+.+-.. ..+|++++-...
T Consensus 41 ~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 41 GDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--P-GTDGR------EVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--S-SSCHH------HHHHHHTTSTTGGGSCEEEEESCC
T ss_pred HHHHHHHHHhcccccCcccCCCCcEEEEECCC--C-CCCHH------HHHHHHHhCcccCCCeEEEEeCCC
Confidence 4455666665 789999999664 1 11121 233444443 468999886543
No 201
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=25.47 E-value=1.9e+02 Score=22.81 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=28.6
Q ss_pred CCCEEEEecCCCCCCcccccCCccccchh-HHHhcCCCccEEEEeCCCCCC
Q 027929 141 GLSAMIMGGRGIGIGAVRRSSVGRLGSVS-DYCVHHCVCPVVVLRYPDDSR 190 (217)
Q Consensus 141 ~~dlIVlG~~~~~~~~~~~~~~~~~gS~s-~~ll~~a~~PVlvv~~~~~~~ 190 (217)
++|.+++|+.+ -....++-+ ..|+.. ..++++..+|++|+-+..+-.
T Consensus 177 ~vd~vivGAd~--i~~nG~v~n-kiGt~~iA~~A~~~~vp~~V~a~~~K~~ 224 (276)
T 1vb5_A 177 EASIAIVGADM--ITKDGYVVN-KAGTYLLALACHENAIPFYVAAETYKFH 224 (276)
T ss_dssp TCSEEEECCSE--ECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECCGGGBC
T ss_pred cCCEEEEcccE--EecCCCEee-chhHHHHHHHHHHcCCCEEEeccccccC
Confidence 79999999886 332222200 134332 345666889999997655533
No 202
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=25.44 E-value=2.4e+02 Score=24.44 Aligned_cols=46 Identities=4% Similarity=-0.016 Sum_probs=29.7
Q ss_pred HHHHHHHH-HHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEV-ERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a-~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
...+++.+ +..++|.||+=-+. .+ .++..-.+++..++|||+....
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~T--Fs---------~a~~~i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHT--FS---------PAKMWINGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCS--CC---------CTHHHHHHHHHCCSCEEEEECC
T ss_pred HHHHHHHhccccCCcEEEEeCCc--Cc---------cHHHHHHHHHhcCCCEEEEeCC
Confidence 33445555 45588999887664 22 1344456778899999998643
No 203
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=25.40 E-value=1.1e+02 Score=26.71 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYPDD 188 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~~~ 188 (217)
++...++.+.+.++..||+-+.+ |.++..+.+.- .||++.+-+..+
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s--------------G~ta~~isr~RP~~pI~a~t~~~~ 428 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS--------------GTTPRLVSKYRPNCPIILVTRCPR 428 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS--------------SHHHHHHHHTCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------chHHHHHHhhCCCCCEEEEcCCHH
Confidence 56667778888999999888776 77888888874 599999976544
No 204
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.26 E-value=2.2e+02 Score=21.43 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+.+.|..+......+ +.. ..+++.+...++|-||+.... . .. . -..+....+||+++-
T Consensus 28 gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~--~---~~--------~-~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDANA-DIEREKTLLRAIGSRGFDGLILQSFS--N---PQ--------T-VQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHTTTCEEEEEECTT-CHHHHHHHHHHHHTTTCSEEEEESSC--C---HH--------H-HHHHHTTSSCEEEES
T ss_pred HHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEecCC--c---HH--------H-HHHHHHCCCCEEEEe
Confidence 34444555677765544443 332 346677777899999998665 2 11 1 234556789998885
Q ss_pred C
Q 027929 185 Y 185 (217)
Q Consensus 185 ~ 185 (217)
.
T Consensus 93 ~ 93 (276)
T 3jy6_A 93 R 93 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 205
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.20 E-value=1.7e+02 Score=24.42 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=51.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCC---------e-----EEEEEEEeCCcccCcccccccCCCCCCCcCCCcccc
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGD---------A-----VVLLHVRQTSVLYGADWGFINNTENRNDDEGGWGGI 91 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~---------~-----l~lvhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
-+|-|++..-..+..-.+.|.++.++.|. . =.++|+.-+..+ ..
T Consensus 13 ~~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F----------------------~s 70 (371)
T 3qi7_A 13 FKVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENF----------------------TS 70 (371)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTG----------------------GG
T ss_pred eEEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCc----------------------hH
Confidence 48888888777776666666666655443 0 247777322111 11
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhcCceEEEEEeecCCh-HHHHHHHHHHcCCCEEEEecCC
Q 027929 92 QLDSTETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDM-KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~-~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
++.... ..+...+...++.+ .+...... ....++.++++++|.|+++...
T Consensus 71 e~~ttI--------~~I~~~a~~~gyk~--II~n~~~~~~~~~i~~lkekrvDgIIi~~~~ 121 (371)
T 3qi7_A 71 NIDSAI--------NKIVKLADDKEVQA--IVVSTDQAGLLPALQKVKEKRPEIITISAPM 121 (371)
T ss_dssp GHHHHH--------HHHHGGGGCTTEEE--EEEECSSCCCHHHHHHHHHHCTTSEEEESSC
T ss_pred HHHHHH--------HHHHHHhhcCCCeE--EEEECCCcchHHHHHHHHhcCCCEEEEeccc
Confidence 111111 12233334445443 34332111 3567888999999998877654
No 206
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=25.10 E-value=2.8e+02 Score=23.13 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHhhhhhhcCceEEEEEeecC------ChHHHHHHHHHHcCCC---EE-EEecCCCCCCcccccCCccccchhHHHh--
Q 027929 106 KNIAEPLEEAGLQYKIHIVKDH------DMKERLCLEVERLGLS---AM-IMGGRGIGIGAVRRSSVGRLGSVSDYCV-- 173 (217)
Q Consensus 106 ~~~~~~~~~~~v~v~~~v~~g~------~~~~~I~~~a~~~~~d---lI-VlG~~~~~~~~~~~~~~~~~gS~s~~ll-- 173 (217)
+++.+.+...|+.+...++.+. +..+.+++.+.+.++| +| -+|... .+.++..+.
T Consensus 79 ~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGs-------------v~D~ak~~Aa~ 145 (390)
T 3okf_A 79 PAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGV-------------IGDLVGFAAAC 145 (390)
T ss_dssp HHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcH-------------HhhHHHHHHHH
Confidence 3444555556888876666542 2355778888888884 43 344322 233443332
Q ss_pred cCCCccEEEEeCC
Q 027929 174 HHCVCPVVVLRYP 186 (217)
Q Consensus 174 ~~a~~PVlvv~~~ 186 (217)
-...+|++.||-.
T Consensus 146 ~~rgip~I~IPTT 158 (390)
T 3okf_A 146 YQRGVDFIQIPTT 158 (390)
T ss_dssp BTTCCEEEEEECS
T ss_pred hcCCCCEEEeCCC
Confidence 4567999999865
No 207
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=24.94 E-value=97 Score=27.41 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
++...++.+...++..||+-+.+ |.++..+.+.-| ||++.+-+.
T Consensus 431 ia~aa~~~A~~l~a~aIv~~T~S--------------G~TA~~iSr~RP~~PIia~T~~ 475 (550)
T 3gr4_A 431 TAVGAVEASFKCCSGAIIVLTKS--------------GRSAHQVARYRPRAPIIAVTRN 475 (550)
T ss_dssp HHHHHHHHHHHTTCSCEEEECSS--------------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC--------------cHHHHHHHhhCCCCCEEEEcCC
Confidence 44556677788899999988776 778888888754 999988543
No 208
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=24.77 E-value=1.7e+02 Score=22.11 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=34.8
Q ss_pred HhhhhhhcCceEEEEEeec--CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEE
Q 027929 108 IAEPLEEAGLQYKIHIVKD--HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVL 183 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g--~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv 183 (217)
..+..++.|++ ..|+-+ +..+..+.+.. .+..+||+..+. |....... -+..-..+-++....+|+.-
T Consensus 35 a~era~e~~Ik--~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~-GF~~pg~~---e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 35 AVERAKELGIK--HLVVASSYGDTAMKALEMA--EGLEVVVVTYHT-GFVREGEN---TMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp HHHHHHHHTCC--EEEEECSSSHHHHHHHHHC--TTCEEEEEECCT-TSSSTTCC---SSCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHcCCC--EEEEEeCCChHHHHHHHHh--cCCeEEEEeCcC-CCCCCCCC---cCCHHHHHHHHhCCCEEEEE
Confidence 33444445665 333332 23344444433 356788887553 02222222 45566667777777777653
No 209
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.71 E-value=2.3e+02 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=23.0
Q ss_pred hhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 110 EPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 110 ~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
+.+.+.|..+......+..-...+++.....++|-||+....
T Consensus 35 ~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 35 AAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp HHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred HHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 334445766655544442213445555556778887776543
No 210
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.70 E-value=2.3e+02 Score=21.48 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=39.9
Q ss_pred HHhhhhhhcCceEEEEEeecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
.+.+.+.+.|..+......+ +.. ..+++.+...++|-||+.... . . ...-..+....+||+++-
T Consensus 29 gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~--~--~---------~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 29 GVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSE--G--E---------HDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCS--S--C---------CHHHHHSSCTTSCEEEES
T ss_pred HHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCC--C--C---------hHHHHHhhccCCCEEEEe
Confidence 34444555687766554433 333 346777778899999987654 2 1 112234566789999885
Q ss_pred CC
Q 027929 185 YP 186 (217)
Q Consensus 185 ~~ 186 (217)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 211
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=24.53 E-value=1e+02 Score=23.87 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=28.0
Q ss_pred HHHHHHHHH--HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVE--RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~--~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
.+.|.+..+ ..++|+||+-..+ +....+ ..+...-.+++...+||++|=+.
T Consensus 118 ~~~I~~~~~~l~~~~D~vlIEGag---Gl~~pl---~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 118 TDNLTQRLHNFTKTYDLVIVEGAG---GLCVPI---TLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHHGGGTCSEEEEECCS---CTTCBS---SSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCEEEEECCC---Cccccc---cccchHHHHHHHcCCCEEEEEcC
Confidence 344555444 3478888886654 111111 11222345788888888887544
No 212
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=24.37 E-value=71 Score=26.86 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=28.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE
Q 027929 26 RKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL 59 (217)
Q Consensus 26 ~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv 59 (217)
++|++|.|+.....+|...++..+...+..+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999999888888877777777654
No 213
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.28 E-value=1.9e+02 Score=21.07 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=22.9
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHH----cCCCEEEEec
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVER----LGLSAMIMGG 149 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~----~~~dlIVlG~ 149 (217)
+.+.+.+.|..+....+-.++ .+.|.+..++ .++|+||.-.
T Consensus 45 L~~~l~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 45 IKQLLIENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEECC
Confidence 344455578877666555545 3344443332 2489888653
No 214
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.10 E-value=2.4e+02 Score=21.51 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCc
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVC 178 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~ 178 (217)
.+..+.+.+.+...+...+..++.+ +..+++....+. .++|.||-. |+++..|-++.+.
T Consensus 22 ~~L~~~~~~i~~e~~~~~~I~vi~~-~le~av~~a~~~~~~~~~dVIISR-----------------Ggta~~Lr~~~~i 83 (225)
T 2pju_A 22 TRLFELFRDISLEFDHLANITPIQL-GFEKAVTYIRKKLANERCDAIIAA-----------------GSNGAYLKSRLSV 83 (225)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECC-CHHHHHHHHHHHTTTSCCSEEEEE-----------------HHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhhCCCceEEEecC-cHHHHHHHHHHHHhcCCCeEEEeC-----------------ChHHHHHHhhCCC
Q ss_pred cEEEEe
Q 027929 179 PVVVLR 184 (217)
Q Consensus 179 PVlvv~ 184 (217)
||+-++
T Consensus 84 PVV~I~ 89 (225)
T 2pju_A 84 PVILIK 89 (225)
T ss_dssp CEEEEC
T ss_pred CEEEec
No 215
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.06 E-value=68 Score=24.39 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=38.6
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEE--ecCCCCCCcccccCCccccchhHHHhcCC---CccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIM--GGRGIGIGAVRRSSVGRLGSVSDYCVHHC---VCPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVl--G~~~~~~~~~~~~~~~~~gS~s~~ll~~a---~~PVlvv~~ 185 (217)
++..|.++ ..+--.-+.+.|++.+++.++|+|.+ .... ..... .+..+.+.+-+.. ++||++=-.
T Consensus 116 l~~~G~~V--i~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~--~~~~~-----~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 116 LGANGFQI--VDLGVDVLNENVVEEAAKHKGEKVLLVGSALM--TTSML-----GQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHTSCEE--EECCSSCCHHHHHHHHHHTTTSCEEEEEECSS--HHHHT-----HHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred HHHCCCeE--EEcCCCCCHHHHHHHHHHcCCCEEEEEchhcc--cCcHH-----HHHHHHHHHHHcCCCCCCEEEEECC
Confidence 34456654 23322457899999999999999999 4332 21111 2344555554443 477776543
No 216
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.06 E-value=1.8e+02 Score=19.98 Aligned_cols=49 Identities=4% Similarity=-0.071 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHh---cCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCV---HHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll---~~a~~PVlvv~~~~ 187 (217)
+...++.+++..+|+|++--.- ....++ ...+.+= ....+||+++-...
T Consensus 46 g~~al~~~~~~~~DlillD~~M---P~mdG~------el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 46 GLTALPMLKKGDFDFVVTDWNM---PGMQGI------DLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHHHHCCSEEEEESCC---SSSCHH------HHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCCEEEEcCCC---CCCCHH------HHHHHHHhCCCCCCCeEEEEECCC
Confidence 4456677778899999999763 223333 2333332 22468999986543
No 217
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=23.87 E-value=2.5e+02 Score=21.62 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=36.2
Q ss_pred HhhhhhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|+.+........+... .+++.+...++|-||+.... .... .... ..+....+||+++-.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~--------~~~~-~~~~~~~iPvV~~~~ 90 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD--PTAV--------IPTI-KKALEMGIPVVTLDT 90 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS--TTTT--------HHHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--hHHH--------HHHH-HHHHHCCCeEEEeCC
Confidence 333444567765543222334433 34555566799999987543 2111 1122 234457899999854
No 218
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=23.60 E-value=1.6e+02 Score=19.31 Aligned_cols=48 Identities=8% Similarity=-0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-----cCCCEEEEecCCCCCCcccccCCccccchhHHHhc-----CCCccEEEEeCC
Q 027929 130 KERLCLEVER-----LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH-----HCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~-----~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~-----~a~~PVlvv~~~ 186 (217)
.+..++.+++ ..+|+|++...- . ...+. ...+.+-+ ...+|++++-..
T Consensus 44 ~~~a~~~l~~~~~~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 44 GNAAINKLNELYAAGRWPSIICIDINM--P-GINGW------ELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp HHHHHHHHHHHHTSSCCCSEEEEESSC--S-SSCHH------HHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred HHHHHHHHHHhhccCCCCCEEEEcCCC--C-CCCHH------HHHHHHHHhhhhccCCCeEEEEeCC
Confidence 4455666666 889999999764 2 22222 23333433 357888888543
No 219
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=23.43 E-value=87 Score=20.97 Aligned_cols=47 Identities=2% Similarity=-0.062 Sum_probs=27.2
Q ss_pred HHHHHHHHHHc-CCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 130 KERLCLEVERL-GLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 130 ~~~I~~~a~~~-~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+..++.+++. .+|+|++...- . ...+. ...+.+-+..++|++++-.
T Consensus 48 ~~~al~~l~~~~~~dlvilD~~l--~-~~~g~------~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 48 GQEALDKLAAQPNVDLILLDIEM--P-VMDGM------EFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHHHHHHCTTCCEEEECTTS--C-CCTTC------HHHHHHHHHCCCEEC-CBS
T ss_pred HHHHHHHHhcCCCCCEEEEeCCC--C-CCCHH------HHHHHHHhcCCCCeEEEEE
Confidence 44555666666 79999998663 1 12222 2334444455688888764
No 220
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.35 E-value=2.3e+02 Score=20.95 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHH-HcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccE
Q 027929 102 ATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVE-RLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPV 180 (217)
Q Consensus 102 ~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~-~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PV 180 (217)
.+..+.+.+.+.+.+. +..+..+ +..+++-..-+ ..++|.||-. |.++..|-++.+.||
T Consensus 14 ~~l~~~~~~i~~e~~~--~i~i~~~-~l~~~v~~a~~~~~~~dVIISR-----------------Ggta~~lr~~~~iPV 73 (196)
T 2q5c_A 14 ENLLNLFPKLALEKNF--IPITKTA-SLTRASKIAFGLQDEVDAIISR-----------------GATSDYIKKSVSIPS 73 (196)
T ss_dssp HHHHHHHHHHHHHHTC--EEEEEEC-CHHHHHHHHHHHTTTCSEEEEE-----------------HHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHHhhhCC--ceEEEEC-CHHHHHHHHHHhcCCCeEEEEC-----------------ChHHHHHHHhCCCCE
Q ss_pred EEEe
Q 027929 181 VVLR 184 (217)
Q Consensus 181 lvv~ 184 (217)
+-++
T Consensus 74 V~I~ 77 (196)
T 2q5c_A 74 ISIK 77 (196)
T ss_dssp EEEC
T ss_pred EEEc
No 221
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=23.27 E-value=46 Score=27.08 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=46.7
Q ss_pred hhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCC
Q 027929 113 EEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDD 188 (217)
Q Consensus 113 ~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~ 188 (217)
.+.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .....+. .++......+++ ..+||.+-=+...
T Consensus 13 ~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g--~~~y~g~--~~~~~~v~~~a~-~~VPValHlDHg~ 83 (305)
T 1rvg_A 13 REEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEG--AMKYGGR--ALTLMAVELAKE-ARVPVAVHLDHGS 83 (305)
T ss_dssp HHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHH--HHHHHHH--HHHHHHHHHHHH-CSSCEEEEEEEEC
T ss_pred HHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChh--HHhhCCH--HHHHHHHHHHHh-CCCcEEEECCCCC
Confidence 334554444444554678899999999999999988776 3222221 134566677777 8999988655443
No 222
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=23.20 E-value=2.7e+02 Score=21.83 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=31.5
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEe
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLR 184 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~ 184 (217)
+.+.|+.+...-.....-.+..++...+.++|.||+.+.. .. .....++.. ..+|++++-
T Consensus 33 ~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~--~~-----------~~~~~~a~~~p~~p~v~id 93 (318)
T 2fqx_A 33 AQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSF--LV-----------EAVIETSARFPKQKFLVID 93 (318)
T ss_dssp HHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTT--TH-----------HHHHHHHHHCTTSCEEEES
T ss_pred HHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChh--HH-----------HHHHHHHHHCCCCEEEEEc
Confidence 3345765443222221113345666667789999986443 11 112334443 468999884
No 223
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=23.14 E-value=86 Score=26.93 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCC
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTS 65 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~ 65 (217)
..++|+|+-|....|....+.++.-....|..|+.+.+.++|
T Consensus 60 ~~~~VvIG~D~R~ss~~~~~a~a~gl~s~Gi~V~~~g~~pTP 101 (469)
T 3pdk_A 60 DRPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTP 101 (469)
T ss_dssp SSCEEEEEECSCTTHHHHHHHHHHHHHTTTCEEEEEEECCHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEeCCCChH
Confidence 357899999999999998888888777889999999887766
No 224
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=23.09 E-value=1.2e+02 Score=24.98 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRR-SSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~-~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+....++++++ +|+||+|-.+= ...+-- + ++..+.+. ++.++||++.|..--
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSl-yTSI~P~L---lv~gi~~A-i~~s~A~kV~V~Nlm 230 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSL-FTSILPNL---TIGNIGRA-VCESDAEVVYICNIM 230 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCC-CCCCHHHH---SSHHHHHH-HHHCSSEEEEECCSB
T ss_pred CCHHHHHHHHh--CCEEEECCCCC-HHHhcccc---cCccHHHH-HHhCCCCEEEEeCCC
Confidence 34557777754 99999996651 222222 2 33445555 677899999998643
No 225
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.91 E-value=1.7e+02 Score=19.39 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 104 NAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 104 ~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.++.+.+.+...|+.++..-+...++ +. -.++|.||+|+.-
T Consensus 16 ~a~~i~~~l~~~g~~v~~~~~~~~~~-~~------l~~~d~vi~g~p~ 56 (137)
T 2fz5_A 16 MANEIEAAVKAAGADVESVRFEDTNV-DD------VASKDVILLGCPA 56 (137)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTSCCH-HH------HHTCSEEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEEcccCCH-HH------HhcCCEEEEEccc
Confidence 33445555555677766554443232 11 2478999999875
No 226
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.84 E-value=1.6e+02 Score=20.04 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
+++.++.+++..+|+|++--.= ....++ .++ +.++...+||+++-..
T Consensus 42 g~eAl~~~~~~~~DlvllDi~m---P~~~G~------el~-~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNL---DGEPSY------PVA-DILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSS---SSCCSH------HHH-HHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHHhCCCCEEEEecCC---CCCCHH------HHH-HHHHcCCCCEEEEecC
Confidence 5566677788999999998663 222222 233 4455568999988543
No 227
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=22.55 E-value=84 Score=24.38 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 027929 131 ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPDDSRSQHDSRDDAELHP-VPEEDD 209 (217)
Q Consensus 131 ~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~~~~~~~~~~~~~~~~~-~~~~~~ 209 (217)
..+++.+.+.++|+|.+|.+. --..... -...+.+-+ ...|+++.+.....- ..+.|.=|.| +|.|+.
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~--g~t~~~~-----~~~v~~ir~-~~~Pivl~~y~~n~i---~~gvDg~iipdLp~ee~ 91 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQ--NVTYEKA-----RTLIEKVSQ-YGLPIVVEPSDPSNV---VYDVDYLFVPTVLNSAD 91 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCT--TCCHHHH-----HHHHHHHTT-SCCCEEECCSSCCCC---CCCSSEEEEEEETTBSB
T ss_pred HHHHHHHHHcCCCEEEECCCC--CCCHHHH-----HHHHHHhcC-CCCCEEEecCCcchh---hcCCCEEEEcccCCCCC
Confidence 356777778899999999643 2223222 234444534 789999998873222 2233333333 566666
Q ss_pred cccc
Q 027929 210 SEYH 213 (217)
Q Consensus 210 ~~~~ 213 (217)
.+|.
T Consensus 92 ~~~~ 95 (234)
T 2f6u_A 92 GDWI 95 (234)
T ss_dssp GGGT
T ss_pred HHHH
Confidence 6664
No 228
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=22.40 E-value=3.3e+02 Score=22.70 Aligned_cols=131 Identities=11% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCCcEEEEEecCC--hhHHHHHHHHHHHhCC---CCCeEEEEE-EEeCCcccCcccccccCCCCCCCcCCCccccccchH
Q 027929 23 GAQRKIAIAVDLS--DESAYAVRWAVENYLR---PGDAVVLLH-VRQTSVLYGADWGFINNTENRNDDEGGWGGIQLDST 96 (217)
Q Consensus 23 ~~~~~IlVavD~s--~~s~~al~~A~~la~~---~~~~l~lvh-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (217)
+...+++|-+... .+-..+++||.++... .++.|.+|- ++-.......+|-++-.+.... ..-+..+.
T Consensus 64 g~d~rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeKPRTs~GwKGli~dP~ld------~Sf~g~~G 137 (370)
T 1of8_A 64 GKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVN------NTFNINKG 137 (370)
T ss_dssp TSCCSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSSSSCCCTTTCTTSS------SCCCHHHH
T ss_pred CCCCCeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccccCCccccccccCCCcC------CCcCHHHH
Confidence 3345677766643 3556777777776643 344454433 3221111222343322111111 01111222
Q ss_pred HHHHHHHHHHHHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEE---EEecCCCCCCcccccCCccccchhHHHh
Q 027929 97 ETDLTATNAKNIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAM---IMGGRGIGIGAVRRSSVGRLGSVSDYCV 173 (217)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlI---VlG~~~~~~~~~~~~~~~~~gS~s~~ll 173 (217)
+ +.++++...+.+.|+.+-+++..-..+ +|+ +|+| -+|++. .. ...-..++
T Consensus 138 L-----~i~r~ll~~v~e~GlPvaTEvld~~~~-----qyv----~Dllsw~aIGARt--~e----------sq~hre~A 191 (370)
T 1of8_A 138 L-----QSARQLFVNLTNIGLPIGSEMLDTISP-----QYL----ADLVSFGAIGART--TE----------SQLHRELA 191 (370)
T ss_dssp H-----HHHHHHHHHHHTTTCCEEEECCSSSTH-----HHH----GGGCSEEEECTTT--TT----------CHHHHHHH
T ss_pred H-----HHHHHHHHHHHHcCCceEEeecCcccH-----HHH----HHHHhhccccCcc--cc----------cHHHHHHH
Confidence 2 233444444556899999998887442 333 6777 678775 11 11224455
Q ss_pred cCCCccEEEEeC
Q 027929 174 HHCVCPVVVLRY 185 (217)
Q Consensus 174 ~~a~~PVlvv~~ 185 (217)
....|||.+=+.
T Consensus 192 sgl~~PVg~Kng 203 (370)
T 1of8_A 192 SGLSFPVGFKNG 203 (370)
T ss_dssp HTCSSCEEEECC
T ss_pred hcCCCeEEEcCC
Confidence 678899887554
No 229
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=22.39 E-value=47 Score=28.34 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=16.5
Q ss_pred cCChHHHHHHHHH-HcCCCEEEEecCC
Q 027929 126 DHDMKERLCLEVE-RLGLSAMIMGGRG 151 (217)
Q Consensus 126 g~~~~~~I~~~a~-~~~~dlIVlG~~~ 151 (217)
|.| .+.+++.++ +.++.+|.+-+.+
T Consensus 113 GdD-i~~v~~~~~~~~~ipVi~v~~~G 138 (460)
T 2xdq_A 113 KMD-LEGLAPKLEAEIGIPIVVARANG 138 (460)
T ss_dssp TCC-HHHHHHHHHHHHSSCEEEEECCT
T ss_pred hhC-HHHHHHHHhhccCCcEEEEecCC
Confidence 455 455666654 5678888887776
No 230
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=22.36 E-value=1.3e+02 Score=27.02 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCC-ccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCV-CPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~-~PVlvv~~~ 186 (217)
++...++.+.+.++..||+-+.+ |.++..+.+.-| ||++.+-+.
T Consensus 380 ia~aa~~~a~~l~a~aIv~~T~s--------------G~ta~~isr~RP~~pIia~t~~ 424 (606)
T 3t05_A 380 IGISVAHTALNLNVKAIVAATES--------------GSTARTISKYRPHSDIIAVTPS 424 (606)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS--------------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC--------------chHHHHHHhhCCCCCEEEEcCC
Confidence 44556777888999999988776 778888888855 999988543
No 231
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.33 E-value=1.7e+02 Score=19.70 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc-CCCccEEEEeC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH-HCVCPVVVLRY 185 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~-~a~~PVlvv~~ 185 (217)
.+..++.++...+|+||+...- .+ ..+. ...+.+-. ...+||+++-.
T Consensus 36 ~~~a~~~l~~~~~dliild~~l--~~-~~g~------~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 36 ATEALAGLSADFAGIVISDIRM--PG-MDGL------ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHTCCTTCCSEEEEESCC--SS-SCHH------HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC--CC-CCHH------HHHHHHHhhCCCCCEEEEEC
Confidence 4556666777889999999764 21 1121 22333333 24689998854
No 232
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=22.26 E-value=63 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGR 150 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~ 150 (217)
++.+.+.+.|..+...+--|-+ .+.+- .+.+.++|.+|+|+.
T Consensus 184 ~lr~~~~~~~~~~~I~VDGGI~-~~ti~-~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 184 EISKWISSTDRDILLEIDGGVN-PYNIA-EIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHTSCCEEEEESSCC-TTTHH-HHHTTTCCEEEESHH
T ss_pred HHHHHHHhcCCCeeEEEECCcC-HHHHH-HHHHcCCCEEEEehH
Confidence 3444444456666666666644 34444 455679999999964
No 233
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.20 E-value=2.3e+02 Score=20.93 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=23.4
Q ss_pred hhhhhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEec
Q 027929 109 AEPLEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGG 149 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~ 149 (217)
.+.+.+.|..+....+-.++ .+.|.+..++ .++|+||.-.
T Consensus 55 ~~~L~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 55 TELLTEAGFVVDGVVAVEAD-EVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp HHHHHHTTEEEEEEEEECSC-HHHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCCEEEECC
Confidence 34445568877766655545 3444444332 4799988653
No 234
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.18 E-value=1.7e+02 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.005 Sum_probs=29.1
Q ss_pred CCCcEEEEEecCC---hhHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 027929 23 GAQRKIAIAVDLS---DESAYAVRWAVENYLRPGDAVVLLHVRQ 63 (217)
Q Consensus 23 ~~~~~IlVavD~s---~~s~~al~~A~~la~~~~~~l~lvhV~~ 63 (217)
.++.+|++-.... ..+..++++++..+...+.++.++.+.+
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~d 99 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSD 99 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTT
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhc
Confidence 3456776655432 3578889999998877788988887643
No 235
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=21.92 E-value=56 Score=26.83 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=46.8
Q ss_pred hhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 111 PLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 111 ~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
...+.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .....+ ..++.......+.. ..+||.+-=+..
T Consensus 12 ~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g--~~~y~g--~~~~~~~v~~aa~~~~~VPValHlDHg 85 (323)
T 2isw_A 12 EARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRG--ALKYSD--MIYLKKLCEAALEKHPDIPICIHLDHG 85 (323)
T ss_dssp HHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHH--HHHHTT--THHHHHHHHHHHHHCTTSCEEEEEEEE
T ss_pred HHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChh--HHHhCC--HHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 33344555544445555678899999999999999988776 222211 11344556666666 889988765544
No 236
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=21.91 E-value=68 Score=27.33 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=36.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCC
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTS 65 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~ 65 (217)
.++|+|+-|....|....+.++.-+...|..|+.+.+.++|
T Consensus 41 ~~~VvIG~D~R~ss~~l~~a~~~gl~~~G~~V~~~g~~pTP 81 (455)
T 1wqa_A 41 KPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDVGIAPTP 81 (455)
T ss_dssp SCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEEEECCHH
T ss_pred CCeEEEEeCCCcCHHHHHHHHHHHHHHcCCeEEEeCCCChH
Confidence 35799999999999999999888888889999999887766
No 237
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=21.90 E-value=67 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=35.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEE---EEEeCC
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLL---HVRQTS 65 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lv---hV~~~~ 65 (217)
..+|+|+-|....+..+.+.++..+...|..|+++ ...++|
T Consensus 53 g~~VvVG~D~R~~s~~~~~~~a~~l~a~Gv~V~~~~~~g~~pTP 96 (561)
T 3pmg_A 53 EATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTP 96 (561)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHHHTTCCEEEEEEEEECCHH
T ss_pred CCEEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEecCCCccCHH
Confidence 46899999999999999999999888889999998 566554
No 238
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.89 E-value=1.6e+02 Score=21.19 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=19.3
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHH---cCCCEEEEec
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVER---LGLSAMIMGG 149 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~---~~~dlIVlG~ 149 (217)
+.+.|..+....+-.++ .+.|.+..++ .++|+||.-.
T Consensus 38 l~~~G~~v~~~~iv~Dd-~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEG-YDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp ---CEEEEEEEEEECSS-HHHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHCCCEEeEEEEeCCC-HHHHHHHHHHHHhCCCCEEEECC
Confidence 44568777665555545 3344433332 2599887753
No 239
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=21.89 E-value=1.7e+02 Score=19.02 Aligned_cols=22 Identities=5% Similarity=-0.069 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+..++.+++..+|+||+...-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~~ 57 (140)
T 2qr3_A 36 PVSLSTVLREENPEVVLLDMNF 57 (140)
T ss_dssp HHHHHHHHHHSCEEEEEEETTT
T ss_pred HHHHHHHHHcCCCCEEEEeCCc
Confidence 4566677778899999998663
No 240
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.88 E-value=1.9e+02 Score=21.93 Aligned_cols=60 Identities=7% Similarity=0.018 Sum_probs=34.1
Q ss_pred CceEEEEEe--ecCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCC
Q 027929 116 GLQYKIHIV--KDHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYP 186 (217)
Q Consensus 116 ~v~v~~~v~--~g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~ 186 (217)
|..+..... ...+.. ..+++.+...++|-||+.... ..... .. -..+....+||+++-..
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~--~~~~~--------~~-~~~~~~~~iPvV~~~~~ 103 (304)
T 3gbv_A 40 DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTV--PQYTK--------GF-TDALNELGIPYIYIDSQ 103 (304)
T ss_dssp GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSS--GGGTH--------HH-HHHHHHHTCCEEEESSC
T ss_pred hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCC--hHHHH--------HH-HHHHHHCCCeEEEEeCC
Confidence 555555543 223443 345666777899999998554 21111 11 23345568999998643
No 241
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.74 E-value=2.7e+02 Score=21.14 Aligned_cols=65 Identities=12% Similarity=0.015 Sum_probs=35.2
Q ss_pred HhhhhhhcCceEEEEEeec-CChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKD-HDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g-~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|..+......+ .+....+.+.+...++|-||+.... .. ... -..+....+||+++-.
T Consensus 32 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~--~~----------~~~-~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 32 ITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE--PN----------DPR-VRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC--TT----------CHH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC--CC----------cHH-HHHHhhCCCCEEEECC
Confidence 3344445676654443322 1223556777777888988876432 11 111 2344557888888754
No 242
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.57 E-value=2.9e+02 Score=21.45 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=34.3
Q ss_pred hhhcCceEEEEEeecCChHH--HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 112 LEEAGLQYKIHIVKDHDMKE--RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~--~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.|+.+........+... ..++.+...++|.||+.... ...+ .... ..++...+||+.+-.
T Consensus 29 ~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~--~~~~--------~~~~-~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 29 GKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVS--PDGL--------CPAL-KRAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSS--SSTT--------HHHH-HHHHHTTCEEEEESS
T ss_pred HHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--HHHH--------HHHH-HHHHHCcCEEEEecC
Confidence 34457655432112234443 34555567899999998654 2211 1222 335567899999843
No 243
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=21.52 E-value=83 Score=26.86 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=36.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEEeCCc
Q 027929 25 QRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVRQTSV 66 (217)
Q Consensus 25 ~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~~~~~ 66 (217)
.++|+|+-|....|....+.++.-+...|.+|+.+.+.++|.
T Consensus 48 ~~~VvVG~D~R~ss~~l~~a~~~gl~a~G~~V~~~g~~pTP~ 89 (463)
T 1p5d_X 48 EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPV 89 (463)
T ss_dssp CCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEECCHHH
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEeCCCChHH
Confidence 468999999999999998888888878899999998877663
No 244
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=21.52 E-value=1.4e+02 Score=26.56 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYP 186 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~ 186 (217)
++...++.+.+.++..||+-+.+ |.++..+.+.- .||++.+-+.
T Consensus 361 ia~aa~~~a~~~~a~aIv~~T~s--------------G~ta~~isr~Rp~~pI~a~t~~ 405 (587)
T 2e28_A 361 IGQSVAHTALNLDVAAIVTPTVS--------------GKTPQMVAKYRPKAPIIAVTSN 405 (587)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS--------------SHHHHHHHHTCCSSCEEEEESS
T ss_pred HHHHHHHHHHhCCCCEEEEECCC--------------cHHHHHHHhcCCCCCEEEECCC
Confidence 55566788888999999988776 77888888874 5999988644
No 245
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=21.48 E-value=45 Score=27.20 Aligned_cols=72 Identities=8% Similarity=-0.032 Sum_probs=45.4
Q ss_pred hhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 112 LEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 112 ~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
..+.+..+-.--+.+.....++++.|++.+..+|+-.+.+ .....+. .++........+. +.+||.+-=+..
T Consensus 12 A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g--~~~y~g~--~~~~~~v~~aa~~~~~VPValHLDHg 84 (307)
T 3n9r_A 12 AHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEG--AIKYMGI--DMAVGMVKIMCERYPHIPVALHLDHG 84 (307)
T ss_dssp HHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHH--HHHHHCH--HHHHHHHHHHHHHSTTSCEEEEEEEE
T ss_pred HHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChh--hhhhCCH--HHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 3334555544555555678899999999999999987765 2222111 1344555556665 789988765443
No 246
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=21.38 E-value=3e+02 Score=21.52 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEe
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLR 184 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~ 184 (217)
+.+.|.+.+++.+.|+|+.-..+ -+..... ..+..+...++.+.+|+++..
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~--d~HpDH~---~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAI--GEHPDHE---ATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCT--TCCHHHH---HHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCCC--CCChHHH---HHHHHHHHHHHHcCCCEEEec
Confidence 44567788889999999986443 2222233 456666667777777877664
No 247
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.36 E-value=1.9e+02 Score=19.17 Aligned_cols=51 Identities=2% Similarity=0.044 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHH-cCCCEEEEecCCCCCCcccccCCccccchhHHHhcC-CCccEEEEeCCC
Q 027929 128 DMKERLCLEVER-LGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH-CVCPVVVLRYPD 187 (217)
Q Consensus 128 ~~~~~I~~~a~~-~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~-a~~PVlvv~~~~ 187 (217)
+..+++....+. ..+|+||+...- . ...++ ...+.+-.. ..+||+++-...
T Consensus 53 ~~~~~~~~~~~~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 53 GRAAQIVQRTDGLDAFDILMIDGAA--L-DTAEL------AAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp CCHHHHTTCHHHHTTCSEEEEECTT--C-CHHHH------HHHHHHHHHCTTCEEEEEESCC
T ss_pred CHHHHHHHHHhcCCCCCEEEEeCCC--C-CccHH------HHHHHHHHhCCCCcEEEEeCCC
Confidence 346667666666 899999999763 1 22222 233333333 458898886543
No 248
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=21.36 E-value=1.4e+02 Score=25.41 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 35 SDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 35 s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
...+++.+++|.++|++.+.+|+++|=
T Consensus 207 ~~~~eRiar~AFe~A~~r~kkVt~v~K 233 (427)
T 3us8_A 207 DESITEFARASFNYGLQRKVPVYLSTK 233 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 357788999999999877778888885
No 249
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=21.35 E-value=1.6e+02 Score=24.00 Aligned_cols=52 Identities=4% Similarity=0.098 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCCCCccc-ccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 129 MKERLCLEVERLGLSAMIMGGRGIGIGAVR-RSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 129 ~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~-~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+....++++++ +|+||+|-.+= ...+- -+ ++..+.+. ++.++||++.|..-.
T Consensus 174 a~p~al~AI~~--AD~IvlgPGSl-~TSI~P~L---lv~gi~~A-i~~s~A~kV~v~Nlm 226 (326)
T 2q7x_A 174 ASRRVVQTILE--SDMIVLGPGSL-FTSILPNI---VIXEIGRA-LLETXAEIAYVCNIM 226 (326)
T ss_dssp BCSHHHHHHHH--CSEEEECSSCC-CCCCHHHH---TSHHHHHH-HHHCSSEEEEECCSB
T ss_pred CCHHHHHHHHh--CCEEEECCCCC-HHHHhhhh---hhccHHHH-HHhccCceEEeccCc
Confidence 34557777754 89999996651 22222 22 33445555 677899999998743
No 250
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=21.34 E-value=94 Score=25.92 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=26.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 22 NGAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 22 ~~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
.....+|+|++.|.-.|..++..+. +.+.+|+.||+.
T Consensus 14 ~~~~~kVvVa~SGGvDSsv~a~lL~----~~G~~V~~v~~~ 50 (380)
T 2der_A 14 SETAKKVIVGMSGGVDSSVSAWLLQ----QQGYQVEGLFMK 50 (380)
T ss_dssp ---CCEEEEECCSCSTTHHHHHHHH----TTCCEEEEEEEE
T ss_pred CCCCCEEEEEEEChHHHHHHHHHHH----HcCCeEEEEEEE
Confidence 3456799999999988877766543 347899999984
No 251
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=21.20 E-value=1.7e+02 Score=18.65 Aligned_cols=48 Identities=8% Similarity=-0.090 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYP 186 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~ 186 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-+. ..+|++++-..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~ 85 (127)
T 2jba_A 35 YDSAVNQLNEPWPDLILLAWML--P-GGSGI------QFIKHLRRESMTRDIPVVMLTAR 85 (127)
T ss_dssp HHHHHTTCSSSCCSEEEEESEE--T-TEEHH------HHHHHHHTSTTTTTSCEEEEEET
T ss_pred HHHHHHHHhccCCCEEEEecCC--C-CCCHH------HHHHHHHhCcccCCCCEEEEeCC
Confidence 4455566667789999998653 1 11222 233444333 46899988543
No 252
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=21.10 E-value=46 Score=22.56 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=25.3
Q ss_pred HHhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCC
Q 027929 107 NIAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 107 ~~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
.+.+..++.|++++++..-...+...|...-- .++|+||+..-.
T Consensus 24 aLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I-~~AD~VIia~d~ 67 (106)
T 2m1z_A 24 ALKKGAKKMGNLIKVETQGATGIENELTEKDV-NIGEVVIFAVDT 67 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEESSCCCHHHH-HHCSEEEEEESS
T ss_pred HHHHHHHHCCCEEEEEEecCccccCCCCHHHH-hhCCEEEEeccc
Confidence 34444555688888777765323322321111 258999999764
No 253
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=21.02 E-value=78 Score=23.14 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...+.+++++..|..+...++ +++.|++.|++++++.-.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 456789999999999988887 578888889998887653
No 254
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=20.98 E-value=1.3e+02 Score=25.46 Aligned_cols=27 Identities=7% Similarity=-0.082 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 35 SDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 35 s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
...+++.+++|..+|.+.+.+|+++|=
T Consensus 184 ~~~~eRiar~AF~~A~~~~~~vt~v~K 210 (402)
T 4aoy_A 184 DKSIRSFARACFNYALDMNQDLWFSTK 210 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 367888999999999877788988886
No 255
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.90 E-value=1.9e+02 Score=19.00 Aligned_cols=49 Identities=8% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~ 187 (217)
.+..++.+++..+|+|++...- . ...+. ...+.+-.. ..+||+++-...
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDI--I-GENSP------NLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC---------------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred HHHHHHHHhcCCCCEEEEeCCC--C-CCcHH------HHHHHHHcCcccCCCCEEEEecCC
Confidence 4556667777899999999763 1 12222 344455444 468999986543
No 256
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.85 E-value=2.5e+02 Score=21.23 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=33.6
Q ss_pred HhhhhhhcCceEEEEEeecCCh--HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDM--KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~--~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
+.+.+.+.|..+....... +. ...+++.+...++|-||+.... .. .-.-..+....+||+++-.
T Consensus 35 i~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~vdgiIi~~~~--~~-----------~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 35 ISSFAHVEGYALYMSTGET-EEEIFNGVVKMVQGRQIGGIILLYSR--EN-----------DRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHTTCEEEECCCCS-HHHHHHHHHHHHHTTCCCEEEESCCB--TT-----------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHcCCCCEEEEeCCC--CC-----------hHHHHHHHHCCCCEEEECC
Confidence 3334444576554322222 11 2346666767788888885432 11 1122345566888888843
No 257
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.84 E-value=1.7e+02 Score=22.23 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=34.9
Q ss_pred hhhhhhcCceEEEEEee-cCChH--HHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeC
Q 027929 109 AEPLEEAGLQYKIHIVK-DHDMK--ERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRY 185 (217)
Q Consensus 109 ~~~~~~~~v~v~~~v~~-g~~~~--~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~ 185 (217)
.+.+.+.|..+...... ..+.. ..+++.+...++|-||+.... ...+. ... ..+....+||+++-.
T Consensus 30 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~--~~~~~--------~~~-~~~~~~~iPvV~~~~ 98 (289)
T 3brs_A 30 QMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD--YEKTY--------DAA-KEIKDAGIKLIVIDS 98 (289)
T ss_dssp HHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC--TTTTH--------HHH-TTTGGGTCEEEEESS
T ss_pred HHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC--hHHhH--------HHH-HHHHHCCCcEEEECC
Confidence 33344457665443331 22333 245666667899999987554 21110 111 223446799998843
No 258
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=20.84 E-value=84 Score=22.84 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEEE
Q 027929 23 GAQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHVR 62 (217)
Q Consensus 23 ~~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV~ 62 (217)
...+.++|++..|..+...++ +++.|++.|++++++.-.
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 456789999999998888887 567888889998887654
No 259
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=20.81 E-value=3e+02 Score=21.40 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a~~PVlvv~~~~ 187 (217)
+...++.+++..+|+|++--.- .....++ ...+.+-....+||+++-...
T Consensus 194 g~eAl~~~~~~~~dlvl~D~~M--Pd~mdG~------e~~~~ir~~~~~piI~lT~~~ 243 (286)
T 3n0r_A 194 RGEALEAVTRRTPGLVLADIQL--ADGSSGI------DAVKDILGRMDVPVIFITAFP 243 (286)
T ss_dssp HHHHHHHHHHCCCSEEEEESCC--TTSCCTT------TTTHHHHHHTTCCEEEEESCG
T ss_pred HHHHHHHHHhCCCCEEEEcCCC--CCCCCHH------HHHHHHHhcCCCCEEEEeCCH
Confidence 4456667778899999998763 2123333 223333333389999997653
No 260
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=20.76 E-value=2.1e+02 Score=21.59 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRG 151 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~ 151 (217)
...+.+... ++|.||+|+.-
T Consensus 70 ~~~~~~~l~--~AD~iI~~sP~ 89 (242)
T 1sqs_A 70 GGVIKKELL--ESDIIIISSPV 89 (242)
T ss_dssp HHHHHHHHH--HCSEEEEEEEE
T ss_pred HHHHHHHHH--HCCEEEEEccc
Confidence 345555554 59999999864
No 261
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=20.67 E-value=2.3e+02 Score=22.09 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=24.0
Q ss_pred CCcEEEEEecCChhHHHH-HHHHHHHhCCCCCeEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYA-VRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~a-l~~A~~la~~~~~~l~lvhV 61 (217)
...++.|++|....-... .+++..++.+.+..+..+-+
T Consensus 12 ~~~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kv 50 (255)
T 3qw3_A 12 KRSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKP 50 (255)
T ss_dssp TTCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred cCCCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEE
Confidence 456799999988654322 56666666665555555444
No 262
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.62 E-value=1.9e+02 Score=18.94 Aligned_cols=49 Identities=6% Similarity=-0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhc---CCCccEEEEeCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVH---HCVCPVVVLRYPD 187 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~---~a~~PVlvv~~~~ 187 (217)
.+..++.++...+|+||+...- .. ..+. ...+.+-+ ...+||+++-...
T Consensus 40 ~~~a~~~l~~~~~dlii~d~~l--~~-~~g~------~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 40 GGQCIDLLKKGFSGVVLLDIMM--PG-MDGW------DTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp HHHHHHHHHTCCCEEEEEESCC--SS-SCHH------HHHHHHHHTTCCTTEEEEEEECTT
T ss_pred HHHHHHHHHhcCCCEEEEeCCC--CC-CCHH------HHHHHHHhhcccCCCCEEEEECCC
Confidence 5567777778899999999764 21 1121 23444443 3569999996543
No 263
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=20.61 E-value=1.6e+02 Score=22.30 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=21.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCeEEEEEE
Q 027929 24 AQRKIAIAVDLSDESAYAVRWAVENYLRPGDAVVLLHV 61 (217)
Q Consensus 24 ~~~~IlVavD~s~~s~~al~~A~~la~~~~~~l~lvhV 61 (217)
+..++.|+.|...- ..+++.+-.+ +..+..++|
T Consensus 4 ~~~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikv 36 (221)
T 3exr_A 4 QLPNLQVALDHSNL-KGAITAAVSV----GNEVDVIEA 36 (221)
T ss_dssp CCCEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEE
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEE
Confidence 45689999998754 5555555444 344556677
No 264
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.46 E-value=1.4e+02 Score=19.58 Aligned_cols=47 Identities=9% Similarity=-0.132 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcCC-CccEEEEeCCC
Q 027929 132 RLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHHC-VCPVVVLRYPD 187 (217)
Q Consensus 132 ~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~a-~~PVlvv~~~~ 187 (217)
..++.++...+|+|++...- . ...+. ...+.+-... .+||+++-...
T Consensus 50 ~a~~~l~~~~~dlvi~D~~l--~-~~~g~------~~~~~l~~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 50 FLKGPPADTRPGIVILDLGG--G-DLLGK------PGIVEARALWATVPLIAVSDEL 97 (135)
T ss_dssp GGGCCCTTCCCSEEEEEEET--T-GGGGS------TTHHHHHGGGTTCCEEEEESCC
T ss_pred HHHHHHhccCCCEEEEeCCC--C-CchHH------HHHHHHHhhCCCCcEEEEeCCC
Confidence 34455567889999999764 2 22222 2333443333 68999986543
No 265
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=20.33 E-value=78 Score=26.36 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=48.8
Q ss_pred HhhhhhhcCceEEEEEeecCChHHHHHHHHHHcCCCEEEEecCCCCCCccc---ccCCc------c-----ccchhHHHh
Q 027929 108 IAEPLEEAGLQYKIHIVKDHDMKERLCLEVERLGLSAMIMGGRGIGIGAVR---RSSVG------R-----LGSVSDYCV 173 (217)
Q Consensus 108 ~~~~~~~~~v~v~~~v~~g~~~~~~I~~~a~~~~~dlIVlG~~~~~~~~~~---~~~~~------~-----~gS~s~~ll 173 (217)
+.+...+.+..+-.--+.+.....++++.|++.+..+|+-.+.+ ..... .+... + +......++
T Consensus 20 ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g--~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A 97 (358)
T 1dos_A 20 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNG--GASFIAGKGVKSDVPQGAAILGAISGAHHVHQMA 97 (358)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHH--HHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChh--HHHHhcCCCccccchhhhHHHhHHHHHHHHHHHH
Confidence 33333444555555555555678999999999999999988765 22111 11000 1 133445566
Q ss_pred cCCCccEEEEeCCCCC
Q 027929 174 HHCVCPVVVLRYPDDS 189 (217)
Q Consensus 174 ~~a~~PVlvv~~~~~~ 189 (217)
++.++||.+-=+...+
T Consensus 98 ~~~~VPVaLHlDHg~~ 113 (358)
T 1dos_A 98 EHYGVPVILHTDHCAK 113 (358)
T ss_dssp HHHTCEEEEEECCCCG
T ss_pred HHCCCCEEEECCCCCC
Confidence 7788999887666554
No 266
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.15 E-value=1.7e+02 Score=18.13 Aligned_cols=50 Identities=10% Similarity=-0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCcccccCCccccchhHHHhcC---CCccEEEEeCCCC
Q 027929 130 KERLCLEVERLGLSAMIMGGRGIGIGAVRRSSVGRLGSVSDYCVHH---CVCPVVVLRYPDD 188 (217)
Q Consensus 130 ~~~I~~~a~~~~~dlIVlG~~~~~~~~~~~~~~~~~gS~s~~ll~~---a~~PVlvv~~~~~ 188 (217)
.+..++.++...+|+|++...- . ...+. ...+.+-.. ..+|++++-....
T Consensus 34 ~~~~~~~l~~~~~dlii~d~~~--~-~~~~~------~~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 34 GSTALDQLDLLQPIVILMAWPP--P-DQSCL------LLLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEECST--T-CCTHH------HHHHHHHHTCCCSSCCCEEEESSCC
T ss_pred HHHHHHHHHhcCCCEEEEecCC--C-CCCHH------HHHHHHHhccccCCCCEEEEeCCCC
Confidence 4556666777799999999664 2 11111 234444444 4689998865443
Done!