BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027933
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVE 104
T+R +D+ + +N L E + F++ +L + F VA N ++GYIM ++E
Sbjct: 14 TLRNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVA-IVDNSVVGYIMPRIE 72
Query: 105 ------GQGESW--HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRAS 156
Q S GHV ++ V EYRR+ +A L+ A + L VR S
Sbjct: 73 WGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVS 132
Query: 157 NTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKAL 192
N PAI +YEKL + + + YY+ ED M + L
Sbjct: 133 NYPAIALYEKLNFKKVKVLKGYYADGEDAYLMARPL 168
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF--VRASNTPAIKMYEKLGY---VI 171
+ V P+++R+ L + L LE + D+++ V L+ VRASN AI +YE LG+ I
Sbjct: 69 IAVDPDFQRRGLGRML---LEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATI 125
Query: 172 YRRVLRYYSGEEDGLDMRKALS 193
R G ED + M +S
Sbjct: 126 RRNYYPTAQGHEDAIIMALPIS 147
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 92 GNRIMGYIM----GKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAY 147
G ++ G+I + + W + ++ VSP+++ Q + L++ ++D ++ I +
Sbjct: 61 GQQLAGFIEVHPPTSLAAHQKQW---LLSIGVSPDFQDQGIGGSLLSYIKDXAE-ISGIH 116
Query: 148 FVDLFVRASNTPAIKMYEKLGYV 170
+ L V A+N AI+ YEK G+V
Sbjct: 117 KLSLRVXATNQEAIRFYEKHGFV 139
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLG 168
+ VS E+RRQ +A L+NLL+ ++ + AY + + + PA+ +Y KLG
Sbjct: 111 LAVSGEHRRQGIATALINLLKHEANAL-GAYVIYVQADYGDDPAVALYTKLG 161
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 91 PGNRIMGYIMGKVE---GQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAY 147
P RI+G ++ +G GH+ V V P YR L K L+ L +IS + Y
Sbjct: 73 PTGRIVGSASLMIQPKFTRGGRAVGHIEDVVVDPSYRGAGLGKALIMDLCEIS-RSKGCY 131
Query: 148 FVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177
V L S+ ++ YEKLG+ + R +R
Sbjct: 132 KVIL---DSSEKSLPFYEKLGFRAHERQMR 158
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 82 PDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISD 141
P + +A+G ++G+ + + + H + P YR + L +L D +
Sbjct: 59 PQFVAIADGD---VIGWCDIRRQDRATRAHCGTLGXGILPAYRNKGLGARLXRRTLDAAH 115
Query: 142 KIDKAYFVDLFVRASNTPAIKMYEKLGYV 170
+ + ++L V A N AI +YEK+G+
Sbjct: 116 EF-GLHRIELSVHADNARAIALYEKIGFA 143
>pdb|3EC4|A Chain A, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
pdb|3EC4|B Chain B, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
Length = 228
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 113 HVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIY 172
V+ V PEYR + LA +L+ + I+ + L ASN AI++YE LG+
Sbjct: 159 EVSGVCTWPEYRGRGLAARLIRKV--IAGXAARGEVPYLHSYASNASAIRLYESLGFRAR 216
Query: 173 R 173
R
Sbjct: 217 R 217
>pdb|3DSB|A Chain A, The Crystal Structure Of A Possible Acetyltransferase From
Clostridium Difficile 630
pdb|3DSB|B Chain B, The Crystal Structure Of A Possible Acetyltransferase From
Clostridium Difficile 630
Length = 157
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLG 168
+ +V V EYRR+ + L N +++I DK + L+V N A YE L
Sbjct: 87 IQSVYVDKEYRRKGIFNYLFNYIKNICDKDENIVGXRLYVEKENINAKATYESLN 141
>pdb|3EG7|A Chain A, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|B Chain B, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|C Chain C, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|D Chain D, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|E Chain E, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|F Chain F, Spermidine N1-Acetyltransferase From Vibrio Cholerae
Length = 176
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYV 170
+ ++PE++ + A+ L+N D S I + + L V N A+ +YE+ G+V
Sbjct: 90 IIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFV 143
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 96 MGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRA 155
+G + +V+ ++ + YRR + K++N + +I +K + L V+
Sbjct: 56 VGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQI 115
Query: 156 SNTPAIKMYEKLGYVIYRRVLRYY 179
SN AI Y K G+ I YY
Sbjct: 116 SNESAIDFYRKFGFEIIETKKNYY 139
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93 NRIMGYIMGKVEGQGESW--HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVD 150
N+I+G+I+ K ++W + ++ +TV +YR + K+L+ + + + + +
Sbjct: 85 NQIIGFIVLK-----KNWNNYAYIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXP-GIX 138
Query: 151 LFVRASNTPAIKMYEKLGYVI 171
L + +N A K YEK G+VI
Sbjct: 139 LETQNNNVAACKFYEKCGFVI 159
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGY 169
H + V+ ++ + + +L+ L DI+D V+L V N PA+ +Y K G+
Sbjct: 85 HSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGF 143
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 96 MGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRA 155
+G + +V+ ++ + YRR + K +N + +I +K + L V+
Sbjct: 57 VGAVCCRVDHSQNQKRLYIXTLGCLAPYRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQI 116
Query: 156 SNTPAIKMYEKLGYVIYRRVLRYY 179
SN AI Y K G+ I YY
Sbjct: 117 SNESAIDFYRKFGFEIIETKKNYY 140
>pdb|1WWZ|A Chain A, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
pdb|1WWZ|B Chain B, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
Length = 159
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 82 PDYFHVAEGPGNRIMGYIM------GKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNL 135
D F VA+ G++I+G+I+ K EG+ G + V +++ + + +KL+
Sbjct: 54 SDGFFVAK-VGDKIVGFIVCDKDWFSKYEGRIV---GAIHEFVVDKKFQGKGIGRKLLIT 109
Query: 136 LEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGY 169
D K + ++L+V N A+ +YEK G+
Sbjct: 110 CLDFLGKYNDT--IELWVGEKNYGAMNLYEKFGF 141
>pdb|4FD4|A Chain A, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
pdb|4FD4|B Chain B, Crystal Structure Of Mosquito Arylalkylamine
N-Acetyltransferase Like 5b
Length = 217
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 105 GQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKID-KAYFVDLFVRASNTPAIKM 163
G +++H H+ A V P YR L ++L+ D+S K+ KA D ++ ++K+
Sbjct: 122 GLEKAYHVHILA--VDPTYRGHSLGQRLLQFQMDLSKKLGFKAISGDF----TSVFSVKL 175
Query: 164 YEKLG 168
EKLG
Sbjct: 176 AEKLG 180
>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
N-Acyltransferase From Klebsiella Pneumoniae
Subsp.Pneumoniae Mgh 78578
Length = 162
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 108 ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKL 167
E G + V + P++R QQL +KL+ LE + + D + + L AI +Y +
Sbjct: 71 EEGFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRD-CHTLRLETGIHQHAAIALYTRN 129
Query: 168 GYVIYRRVLRYYSGEEDGLDMRKALSRDVEKKSI 201
GY R Y + + M K L D+ ++
Sbjct: 130 GYQT-RCAFAPYQPDPLSVFMEKPLFADLRSAAL 162
>pdb|2JLM|A Chain A, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|B Chain B, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|C Chain C, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|D Chain D, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|E Chain E, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|F Chain F, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
Length = 182
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDL-FVRASNTPAIKMYEKLGYV 170
+V + +YR L+K LMN E I ++ V + + A+N +I++++KLG++
Sbjct: 95 SVYIHKDYRGLGLSKHLMN--ELIKRAVESEVHVMVGCIDATNVASIQLHQKLGFI 148
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE 182
+R +L +LED I K +VD RA P K+ E L LR
Sbjct: 147 FRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK-------LRMEKSP 199
Query: 183 EDG------LDMRKALSRDVEKKSIIPLKR 206
ED L + L RD+EK S L+R
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQR 229
>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
Length = 175
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174
+V V + R + K+L L D + D + + A NT +I+++E LG+ + R
Sbjct: 88 SVYVHKDARGHGIGKRLXQALIDHAGGNDVHVLI-AAIEAENTASIRLHESLGFRVVGR 145
>pdb|1OZP|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Acetyl-Coenzyme A
Complex.
pdb|1P0H|A Chain A, Crystal Structure Of Rv0819 From Mycobacterium
Tuberculosis Mshd- Mycothiol Synthase Coenzyme A Complex
Length = 318
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 112 GHVTAVTVSPEYRRQQLAKKLMNL-LEDISDKIDKAYFVD--------LFVRASNTPAIK 162
G V + V P +R+ L + L ++ + ++ ++ +D L+V + N A++
Sbjct: 236 GEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRLGGRKTLDPAVEPAVLLYVESDNVAAVR 295
Query: 163 MYEKLGYVIY 172
Y+ LG+ Y
Sbjct: 296 TYQSLGFTTY 305
>pdb|3K2I|A Chain A, Human Acyl-Coenzyme A Thioesterase 4
pdb|3K2I|B Chain B, Human Acyl-Coenzyme A Thioesterase 4
Length = 422
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 167 LGYVIYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTP 210
LGY + RR+ +SG D +D+R AL + S+IP+++ P
Sbjct: 276 LGYDL-RRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGP 318
>pdb|2C27|A Chain A, The Structure Of Mycothiol Synthase In Complex With Des-
Acetylmycothiol And Coenzymea
Length = 315
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 112 GHVTAVTVSPEYRRQQLAKKLMNL-LEDISDKIDKAYFVD--------LFVRASNTPAIK 162
G V + V P +R+ L + L ++ + ++ ++ +D L+V + N A++
Sbjct: 233 GEVYVLGVDPAAQRRGLGQMLTSIGIVSLARRLGGRKTLDPAVEPAVLLYVESDNVAAVR 292
Query: 163 MYEKLGYVIY 172
Y+ LG+ Y
Sbjct: 293 TYQSLGFTTY 302
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 80 RWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKK-----LMN 134
++P++ GN+++GY M G W + + ++ Q K ++
Sbjct: 42 QFPEWESAGIYDGNQLIGYAMYGRWQDGRVW---LDRFLIDQRFQGQGYGKAACRLLMLK 98
Query: 135 LLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVI 171
L+E + +K Y L V +N+ AI++Y++LG+V
Sbjct: 99 LIEKY--QTNKLY---LSVYDTNSSAIRLYQQLGFVF 130
>pdb|2Q04|A Chain A, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|B Chain B, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|C Chain C, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|D Chain D, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|E Chain E, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
pdb|2Q04|F Chain F, Crystal Structure Of Acetoin Utilization Protein
(Zp_00540088.1) From Exiguobacterium Sibiricum 255-15 At
2.33 A Resolution
Length = 211
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 92 GNRIMGYIMGKVEGQGESWHG-------HVTAVTVSPEYRRQQLAKKLMNL 135
GN I+GY+ E+W + A+ V+ +R QQ+ KKL+ +
Sbjct: 69 GNDIIGYVTFLYPDPYETWSEGNNPYILELGAIEVAARFRGQQIGKKLLEV 119
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 112 GHVTAVTVSPEYRRQQLAKKLMNLLED--ISDKIDKAYFVDLFVRASNTPAIKMYEKLGY 169
G + V PE+R + +A L+N LE I+ K + + V N + YE+LGY
Sbjct: 70 GSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK---IQINVPEDNDXVLGXYERLGY 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,881,692
Number of Sequences: 62578
Number of extensions: 276300
Number of successful extensions: 564
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 30
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)