Query 027933
Match_columns 216
No_of_seqs 208 out of 1602
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3234 Acetyltransferase, (GN 99.9 1.3E-23 2.9E-28 145.2 10.0 170 43-213 1-172 (173)
2 KOG3235 Subunit of the major N 99.9 3.6E-22 7.7E-27 138.3 8.2 151 44-194 2-155 (193)
3 KOG3139 N-acetyltransferase [G 99.9 2.7E-20 5.7E-25 130.0 15.8 140 52-192 25-164 (165)
4 PRK10146 aminoalkylphosphonic 99.8 3.5E-20 7.7E-25 132.4 13.7 130 42-173 2-137 (144)
5 PRK09491 rimI ribosomal-protei 99.8 1.9E-19 4E-24 129.1 16.9 143 43-192 1-146 (146)
6 PRK10140 putative acetyltransf 99.8 4.8E-19 1E-23 128.9 18.1 147 43-190 3-160 (162)
7 TIGR01575 rimI ribosomal-prote 99.8 1.1E-18 2.4E-23 122.4 14.9 130 53-188 1-131 (131)
8 COG0456 RimI Acetyltransferase 99.8 6E-19 1.3E-23 130.3 13.5 150 42-192 10-173 (177)
9 PRK03624 putative acetyltransf 99.8 2.8E-18 6.1E-23 121.5 15.8 126 43-174 2-130 (140)
10 TIGR03827 GNAT_ablB putative b 99.8 1.8E-18 4E-23 135.8 16.0 146 42-192 114-266 (266)
11 PRK10809 ribosomal-protein-S5- 99.8 1.8E-17 3.8E-22 124.4 18.4 154 37-191 11-186 (194)
12 PTZ00330 acetyltransferase; Pr 99.8 2E-17 4.3E-22 118.5 17.6 129 43-175 6-142 (147)
13 TIGR02382 wecD_rffC TDP-D-fuco 99.8 7.3E-18 1.6E-22 126.2 15.7 130 44-177 44-188 (191)
14 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.3E-17 2.8E-22 121.0 13.5 126 46-173 1-127 (157)
15 PRK10975 TDP-fucosamine acetyl 99.8 3E-17 6.4E-22 123.2 15.5 130 44-177 47-191 (194)
16 PF13420 Acetyltransf_4: Acety 99.8 4.6E-17 9.9E-22 117.7 15.7 132 46-180 1-145 (155)
17 KOG3216 Diamine acetyltransfer 99.7 9.5E-17 2.1E-21 111.0 14.3 134 43-177 3-149 (163)
18 COG1247 Sortase and related ac 99.7 2.6E-16 5.6E-21 113.2 16.6 150 44-194 2-166 (169)
19 PRK10151 ribosomal-protein-L7/ 99.7 3.3E-16 7.2E-21 116.0 17.4 150 42-194 9-178 (179)
20 PRK15130 spermidine N1-acetylt 99.7 2.3E-16 5E-21 117.6 16.3 147 43-192 6-166 (186)
21 TIGR03103 trio_acet_GNAT GNAT- 99.7 1.8E-16 3.9E-21 135.5 17.4 134 42-176 81-219 (547)
22 PF00583 Acetyltransf_1: Acety 99.7 9.2E-17 2E-21 103.8 11.4 79 91-170 3-83 (83)
23 PRK10514 putative acetyltransf 99.7 3E-16 6.6E-21 112.2 15.2 121 43-177 1-129 (145)
24 PF13523 Acetyltransf_8: Acety 99.7 3.2E-16 6.9E-21 113.1 15.4 130 46-176 1-143 (152)
25 PRK07922 N-acetylglutamate syn 99.7 2.8E-16 6.1E-21 115.2 14.2 123 42-174 4-127 (169)
26 PRK07757 acetyltransferase; Pr 99.7 2.4E-16 5.2E-21 113.7 13.6 122 43-174 1-122 (152)
27 PLN02706 glucosamine 6-phospha 99.7 7.2E-16 1.6E-20 110.9 15.8 128 43-174 6-144 (150)
28 PF13527 Acetyltransf_9: Acety 99.7 4.9E-16 1.1E-20 108.6 13.2 119 45-172 1-127 (127)
29 PRK10314 putative acyltransfer 99.7 1.5E-16 3.2E-21 114.8 9.0 138 46-192 9-150 (153)
30 PRK09831 putative acyltransfer 99.7 4.4E-16 9.5E-21 111.8 11.1 128 44-191 1-144 (147)
31 PRK05279 N-acetylglutamate syn 99.7 4.7E-16 1E-20 130.4 12.5 141 44-192 295-441 (441)
32 PHA00673 acetyltransferase dom 99.7 1.3E-15 2.7E-20 108.2 12.7 126 46-174 9-146 (154)
33 TIGR03585 PseH pseudaminic aci 99.7 1.5E-15 3.3E-20 109.8 13.3 130 45-178 2-142 (156)
34 TIGR03448 mycothiol_MshD mycot 99.7 6.6E-15 1.4E-19 117.3 17.6 133 41-175 147-289 (292)
35 TIGR01890 N-Ac-Glu-synth amino 99.7 9.8E-16 2.1E-20 128.0 13.4 123 44-174 283-405 (429)
36 PLN02825 amino-acid N-acetyltr 99.7 1.2E-15 2.6E-20 128.1 13.4 140 45-192 369-514 (515)
37 PF13673 Acetyltransf_10: Acet 99.7 6.5E-15 1.4E-19 101.3 14.1 104 53-169 1-117 (117)
38 PRK10562 putative acetyltransf 99.6 8.1E-15 1.8E-19 104.9 14.3 129 46-191 2-141 (145)
39 TIGR03448 mycothiol_MshD mycot 99.6 8.3E-15 1.8E-19 116.7 14.7 143 48-210 5-154 (292)
40 COG3153 Predicted acetyltransf 99.6 2.3E-14 4.9E-19 103.4 15.1 149 42-199 2-157 (171)
41 TIGR01686 FkbH FkbH-like domai 99.6 1.1E-14 2.3E-19 117.4 15.0 123 43-172 186-319 (320)
42 PHA01807 hypothetical protein 99.6 1.3E-14 2.9E-19 104.0 13.0 117 49-167 9-136 (153)
43 COG1246 ArgA N-acetylglutamate 99.6 6.7E-15 1.5E-19 103.1 10.8 122 45-174 2-123 (153)
44 PF13302 Acetyltransf_3: Acety 99.6 2.8E-14 6E-19 101.4 14.1 125 44-170 2-142 (142)
45 PRK12308 bifunctional arginino 99.6 8.7E-15 1.9E-19 127.1 13.2 124 42-175 462-585 (614)
46 KOG3138 Predicted N-acetyltran 99.6 1.7E-14 3.8E-19 105.1 9.6 150 43-195 16-175 (187)
47 PF13508 Acetyltransf_7: Acety 99.5 1.4E-13 3.1E-18 88.1 11.3 77 83-171 3-79 (79)
48 PRK01346 hypothetical protein; 99.5 2E-13 4.3E-18 113.8 13.6 126 43-175 6-137 (411)
49 KOG3396 Glucosamine-phosphate 99.5 7.7E-13 1.7E-17 89.9 12.6 128 43-174 6-144 (150)
50 KOG2488 Acetyltransferase (GNA 99.5 2.9E-13 6.2E-18 97.3 9.5 100 74-174 83-182 (202)
51 COG3393 Predicted acetyltransf 99.4 2.9E-12 6.2E-17 97.2 11.7 128 43-177 133-265 (268)
52 PF08445 FR47: FR47-like prote 99.4 1.1E-11 2.5E-16 80.4 12.4 61 112-174 22-82 (86)
53 COG2153 ElaA Predicted acyltra 99.4 1E-12 2.2E-17 90.5 7.7 142 46-193 10-153 (155)
54 PRK13688 hypothetical protein; 99.4 4.1E-12 8.8E-17 91.6 10.8 108 46-175 20-134 (156)
55 cd02169 Citrate_lyase_ligase C 99.4 7.9E-12 1.7E-16 98.9 10.8 78 84-173 6-83 (297)
56 COG1670 RimL Acetyltransferase 99.3 9E-11 1.9E-15 86.8 11.8 85 92-177 76-161 (187)
57 TIGR00124 cit_ly_ligase [citra 99.2 2.6E-10 5.7E-15 91.7 12.9 81 83-176 31-111 (332)
58 KOG3397 Acetyltransferases [Ge 99.2 1.3E-10 2.9E-15 82.3 9.6 127 43-177 12-144 (225)
59 COG3981 Predicted acetyltransf 99.2 3.6E-10 7.8E-15 80.4 11.6 132 43-176 3-161 (174)
60 PF13718 GNAT_acetyltr_2: GNAT 99.1 3.1E-09 6.8E-14 78.6 13.6 118 73-193 17-196 (196)
61 TIGR01211 ELP3 histone acetylt 99.1 1.7E-09 3.8E-14 91.7 12.3 80 92-175 422-517 (522)
62 PF08444 Gly_acyl_tr_C: Aralky 99.1 5.7E-10 1.2E-14 71.3 6.3 76 89-173 4-79 (89)
63 KOG4144 Arylalkylamine N-acety 99.0 1.9E-10 4.2E-15 79.9 4.0 148 42-192 10-183 (190)
64 PF12746 GNAT_acetyltran: GNAT 99.0 2E-08 4.3E-13 78.1 14.6 128 42-182 127-255 (265)
65 cd04301 NAT_SF N-Acyltransfera 98.9 2.6E-08 5.7E-13 59.7 8.5 59 91-151 6-64 (65)
66 COG3818 Predicted acetyltransf 98.8 1.9E-08 4.2E-13 68.1 5.8 129 43-176 7-150 (167)
67 KOG4135 Predicted phosphogluco 98.7 4.8E-07 1E-11 62.8 10.5 132 44-175 14-171 (185)
68 COG1444 Predicted P-loop ATPas 98.6 1.2E-06 2.6E-11 76.6 14.6 118 74-194 461-612 (758)
69 PF14542 Acetyltransf_CG: GCN5 98.6 1E-06 2.3E-11 55.8 10.3 67 91-167 6-72 (78)
70 PF12568 DUF3749: Acetyltransf 98.6 5.4E-06 1.2E-10 56.6 13.2 90 74-172 30-123 (128)
71 COG3375 Uncharacterized conser 98.4 2.3E-05 4.9E-10 58.4 14.5 149 44-193 3-165 (266)
72 COG2388 Predicted acetyltransf 98.3 2.7E-06 5.9E-11 56.0 7.0 63 82-149 14-76 (99)
73 COG5628 Predicted acetyltransf 98.1 4.7E-05 1E-09 51.1 9.6 91 74-170 28-119 (143)
74 COG3053 CitC Citrate lyase syn 98.1 4.1E-05 8.9E-10 59.4 9.9 83 82-176 35-117 (352)
75 PF06852 DUF1248: Protein of u 97.9 0.00066 1.4E-08 49.8 13.3 122 47-174 8-137 (181)
76 COG0454 WecD Histone acetyltra 97.9 2.1E-05 4.6E-10 52.6 4.8 44 117-169 87-130 (156)
77 COG4552 Eis Predicted acetyltr 97.9 7.7E-05 1.7E-09 59.5 8.2 86 83-175 39-128 (389)
78 PF00765 Autoind_synth: Autoin 97.9 0.00024 5.1E-09 52.6 10.4 137 50-191 6-172 (182)
79 KOG3698 Hyaluronoglucosaminida 97.9 0.00013 2.7E-09 61.6 9.2 142 44-191 680-890 (891)
80 PF04958 AstA: Arginine N-succ 97.7 0.0004 8.6E-09 55.9 8.9 93 43-135 1-145 (342)
81 PRK13834 putative autoinducer 97.6 0.0013 2.9E-08 49.7 11.3 120 50-173 14-164 (207)
82 PRK10456 arginine succinyltran 97.6 0.00041 8.9E-09 55.7 8.4 93 43-135 1-143 (344)
83 PF13480 Acetyltransf_6: Acety 97.6 0.0024 5.2E-08 44.7 11.6 103 44-152 20-134 (142)
84 TIGR03694 exosort_acyl putativ 97.5 0.0029 6.3E-08 49.1 11.4 126 44-173 8-197 (241)
85 COG1243 ELP3 Histone acetyltra 97.4 0.00026 5.7E-09 58.5 4.4 52 120-175 459-510 (515)
86 COG3916 LasI N-acyl-L-homoseri 97.2 0.011 2.5E-07 44.0 11.6 143 48-194 11-183 (209)
87 COG3882 FkbH Predicted enzyme 97.2 0.002 4.3E-08 53.8 8.2 127 43-174 413-550 (574)
88 TIGR03827 GNAT_ablB putative b 97.1 0.0026 5.7E-08 50.1 7.3 64 127-195 21-84 (266)
89 PF01233 NMT: Myristoyl-CoA:pr 97.0 0.028 6.2E-07 40.2 11.4 105 43-149 23-147 (162)
90 TIGR03245 arg_AOST_alph argini 97.0 0.0041 8.9E-08 50.0 7.8 90 46-135 2-142 (336)
91 TIGR03244 arg_catab_AstA argin 97.0 0.0038 8.2E-08 50.2 7.5 90 46-135 2-141 (336)
92 PF13880 Acetyltransf_13: ESCO 97.0 0.0026 5.6E-08 39.0 5.1 31 111-141 5-35 (70)
93 TIGR03243 arg_catab_AOST argin 96.9 0.0055 1.2E-07 49.2 7.9 90 46-135 2-141 (335)
94 KOG2535 RNA polymerase II elon 96.9 0.001 2.2E-08 53.2 3.4 51 121-174 497-547 (554)
95 cd04264 DUF619-NAGS DUF619 dom 96.8 0.014 3E-07 38.6 7.8 61 91-158 15-75 (99)
96 TIGR03019 pepcterm_femAB FemAB 96.8 0.046 1E-06 44.4 12.4 128 44-178 152-285 (330)
97 PF04768 DUF619: Protein of un 96.5 0.083 1.8E-06 38.6 11.0 112 49-171 28-143 (170)
98 cd04265 DUF619-NAGS-U DUF619 d 96.4 0.034 7.3E-07 36.8 7.5 59 92-158 17-75 (99)
99 PHA00432 internal virion prote 96.4 0.011 2.3E-07 41.2 5.2 118 45-174 2-121 (137)
100 PF02474 NodA: Nodulation prot 96.3 0.024 5.1E-07 40.9 6.8 153 49-210 15-191 (196)
101 PF02799 NMT_C: Myristoyl-CoA: 96.2 0.11 2.5E-06 38.4 10.3 135 36-179 21-170 (190)
102 KOG2036 Predicted P-loop ATPas 96.2 0.028 6.1E-07 49.3 7.9 83 112-195 615-747 (1011)
103 PRK14852 hypothetical protein; 96.1 0.044 9.5E-07 50.3 9.2 145 44-193 29-200 (989)
104 PF09390 DUF1999: Protein of u 95.9 0.37 8.1E-06 33.7 11.7 125 44-174 1-141 (161)
105 PF11039 DUF2824: Protein of u 95.7 0.4 8.7E-06 33.1 11.4 131 43-183 1-131 (151)
106 COG5630 ARG2 Acetylglutamate s 95.6 0.045 9.8E-07 44.4 6.3 111 52-172 345-458 (495)
107 PF05301 Mec-17: Touch recepto 95.5 0.12 2.7E-06 35.0 7.4 51 113-167 48-98 (120)
108 PF04377 ATE_C: Arginine-tRNA- 95.4 0.13 2.8E-06 35.7 7.5 78 73-155 27-105 (128)
109 PF01853 MOZ_SAS: MOZ/SAS fami 95.4 0.12 2.6E-06 38.1 7.5 46 94-142 66-111 (188)
110 PHA01733 hypothetical protein 95.3 0.073 1.6E-06 37.8 6.0 124 45-175 4-133 (153)
111 PRK00756 acyltransferase NodA; 95.2 0.22 4.8E-06 35.8 8.0 146 49-200 15-184 (196)
112 COG3138 AstA Arginine/ornithin 94.8 0.085 1.8E-06 41.3 5.4 92 43-134 1-142 (336)
113 PLN03238 probable histone acet 94.4 0.19 4.2E-06 39.5 6.7 48 92-142 139-186 (290)
114 PRK01305 arginyl-tRNA-protein 93.8 0.86 1.9E-05 35.3 9.2 81 72-157 131-212 (240)
115 PF02388 FemAB: FemAB family; 93.4 0.93 2E-05 38.1 9.7 122 70-194 20-160 (406)
116 PTZ00064 histone acetyltransfe 93.2 0.22 4.8E-06 42.1 5.4 48 92-142 368-415 (552)
117 COG2401 ABC-type ATPase fused 92.9 0.041 8.8E-07 45.8 0.8 61 112-173 242-307 (593)
118 KOG2779 N-myristoyl transferas 92.8 0.61 1.3E-05 37.8 7.1 151 19-178 234-401 (421)
119 PLN03239 histone acetyltransfe 92.6 0.45 9.8E-06 38.6 6.2 48 92-142 197-244 (351)
120 PLN00104 MYST -like histone ac 92.1 0.23 5E-06 41.7 4.2 48 92-142 290-337 (450)
121 KOG2779 N-myristoyl transferas 91.9 0.99 2.1E-05 36.6 7.3 52 91-142 143-198 (421)
122 PF11124 Pho86: Inorganic phos 91.7 3.1 6.7E-05 33.2 9.8 82 92-173 177-270 (304)
123 KOG4601 Uncharacterized conser 91.6 2.9 6.3E-05 31.9 9.1 55 112-170 109-164 (264)
124 PF13444 Acetyltransf_5: Acety 90.3 1.3 2.7E-05 29.3 5.7 48 86-133 33-100 (101)
125 PF09924 DUF2156: Uncharacteri 90.1 7.3 0.00016 31.1 11.0 105 44-152 133-245 (299)
126 KOG2747 Histone acetyltransfer 89.9 0.6 1.3E-05 38.5 4.6 31 112-142 261-291 (396)
127 KOG2696 Histone acetyltransfer 89.8 1.1 2.5E-05 36.5 5.9 45 111-157 217-261 (403)
128 cd04266 DUF619-NAGS-FABP DUF61 88.7 3.5 7.5E-05 27.7 6.8 67 92-164 17-87 (108)
129 PF12261 T_hemolysin: Thermost 84.2 5.5 0.00012 29.4 6.5 80 86-173 37-141 (179)
130 COG2935 Putative arginyl-tRNA: 83.8 5.8 0.00013 30.7 6.6 61 92-157 159-219 (253)
131 PF11090 DUF2833: Protein of u 83.4 5.5 0.00012 25.5 5.3 28 146-173 56-83 (86)
132 COG5092 NMT1 N-myristoyl trans 81.8 26 0.00055 28.4 9.6 97 45-142 83-196 (451)
133 cd03173 DUF619-like DUF619 dom 80.8 14 0.00029 24.4 7.6 63 92-164 17-79 (98)
134 PF04339 DUF482: Protein of un 80.7 12 0.00026 31.1 7.9 121 44-176 200-331 (370)
135 PRK04531 acetylglutamate kinas 79.8 12 0.00026 31.5 7.7 102 52-171 262-365 (398)
136 COG5027 SAS2 Histone acetyltra 79.2 1.2 2.5E-05 36.1 1.5 44 95-141 249-292 (395)
137 PF07395 Mig-14: Mig-14; Inte 78.8 8.7 0.00019 30.2 6.2 101 45-147 128-239 (264)
138 PF04339 DUF482: Protein of un 78.8 5.9 0.00013 32.9 5.6 85 84-172 45-158 (370)
139 PF10530 Toxin_35: Toxin with 78.6 0.94 2E-05 21.0 0.5 11 1-11 2-12 (23)
140 PF12953 DUF3842: Domain of un 76.5 6.7 0.00014 27.2 4.4 45 123-172 7-51 (131)
141 KOG4387 Ornithine decarboxylas 74.5 12 0.00027 27.4 5.5 71 127-197 115-188 (191)
142 PHA02769 hypothetical protein; 74.3 3.6 7.8E-05 27.7 2.6 44 129-175 94-140 (154)
143 cd07235 MRD Mitomycin C resist 70.4 5.1 0.00011 26.8 2.8 25 148-173 3-27 (122)
144 PRK02983 lysS lysyl-tRNA synth 67.3 42 0.00091 32.3 8.8 65 86-155 423-487 (1094)
145 cd08353 Glo_EDI_BRP_like_7 Thi 66.3 5.9 0.00013 27.4 2.5 29 145-174 3-31 (142)
146 KOG3014 Protein involved in es 64.3 67 0.0015 25.1 7.9 30 111-140 183-212 (257)
147 PRK15312 antimicrobial resista 63.1 11 0.00024 30.1 3.6 97 45-142 156-265 (298)
148 PF02100 ODC_AZ: Ornithine dec 62.1 43 0.00092 22.5 5.9 72 119-191 30-107 (108)
149 PHA00771 head assembly protein 61.9 50 0.0011 22.9 10.4 95 85-185 39-133 (151)
150 COG5092 NMT1 N-myristoyl trans 59.4 28 0.0006 28.2 5.2 131 45-179 260-419 (451)
151 COG2898 Uncharacterized conser 54.6 83 0.0018 27.7 7.7 64 86-153 395-458 (538)
152 cd07267 THT_Oxygenase_N N-term 54.6 15 0.00033 24.2 2.8 28 146-174 4-31 (113)
153 COG3473 Maleate cis-trans isom 53.5 28 0.0006 26.5 4.1 38 137-175 110-150 (238)
154 PF04816 DUF633: Family of unk 53.3 68 0.0015 24.2 6.4 50 127-176 74-124 (205)
155 cd08344 MhqB_like_N N-terminal 52.9 17 0.00038 23.8 2.9 28 146-174 3-30 (112)
156 cd09012 Glo_EDI_BRP_like_24 Th 52.1 13 0.00028 25.0 2.2 17 157-173 11-27 (124)
157 COG5653 Protein involved in ce 51.9 1.5E+02 0.0032 25.1 10.2 88 62-155 247-338 (406)
158 cd08356 Glo_EDI_BRP_like_17 Th 51.0 14 0.00031 24.4 2.3 19 157-175 12-30 (113)
159 cd08358 Glo_EDI_BRP_like_21 Th 49.7 31 0.00067 23.8 3.8 26 149-175 6-32 (127)
160 PRK14968 putative methyltransf 49.2 95 0.0021 22.3 6.6 45 131-176 129-173 (188)
161 PF00903 Glyoxalase: Glyoxalas 48.9 26 0.00056 23.0 3.3 30 146-176 2-32 (128)
162 cd08342 HPPD_N_like N-terminal 47.8 28 0.00061 23.9 3.4 27 148-175 3-30 (136)
163 PF00925 GTP_cyclohydro2: GTP 46.5 39 0.00084 24.6 4.1 46 120-175 122-167 (169)
164 cd08350 BLMT_like BLMT, a bleo 46.1 21 0.00045 23.7 2.5 19 157-175 13-31 (120)
165 TIGR03645 glyox_marine lactoyl 46.0 25 0.00053 25.2 3.0 29 144-173 3-32 (162)
166 cd08346 PcpA_N_like N-terminal 42.9 36 0.00079 22.4 3.3 28 147-175 3-31 (126)
167 TIGR02990 ectoine_eutA ectoine 42.8 38 0.00083 26.3 3.7 45 130-175 105-152 (239)
168 PTZ00129 40S ribosomal protein 42.1 1.3E+02 0.0028 21.6 6.6 49 125-174 69-129 (149)
169 PF06559 DCD: 2'-deoxycytidine 42.0 13 0.00028 30.3 1.0 38 86-128 319-356 (364)
170 PRK10975 TDP-fucosamine acetyl 41.2 1E+02 0.0023 22.5 5.8 40 145-194 3-42 (194)
171 cd07265 2_3_CTD_N N-terminal d 40.1 38 0.00082 22.5 3.0 28 146-174 5-33 (122)
172 cd08352 Glo_EDI_BRP_like_1 Thi 37.1 49 0.0011 21.6 3.2 29 145-174 3-32 (125)
173 PF00571 CBS: CBS domain CBS d 37.1 77 0.0017 17.6 4.0 25 76-100 23-47 (57)
174 PF02388 FemAB: FemAB family; 36.5 2.6E+02 0.0057 23.6 8.7 56 92-152 301-356 (406)
175 COG0346 GloA Lactoylglutathion 36.3 55 0.0012 21.2 3.4 29 146-175 3-32 (138)
176 cd07253 Glo_EDI_BRP_like_2 Thi 34.9 43 0.00093 21.9 2.7 29 145-174 3-32 (125)
177 cd08362 BphC5-RrK37_N_like N-t 34.8 48 0.0011 21.7 2.9 29 145-174 3-32 (120)
178 COG0807 RibA GTP cyclohydrolas 34.7 1.1E+02 0.0023 23.0 4.8 51 116-176 119-169 (193)
179 TIGR00068 glyox_I lactoylgluta 34.4 59 0.0013 22.7 3.4 30 144-174 16-46 (150)
180 cd07243 2_3_CTD_C C-terminal d 33.9 60 0.0013 22.6 3.3 29 146-175 7-36 (143)
181 TIGR00505 ribA GTP cyclohydrol 33.3 1.4E+02 0.0029 22.3 5.3 46 120-175 121-166 (191)
182 cd04263 DUF619-NAGK-FABP DUF61 33.1 1.5E+02 0.0032 19.6 7.7 42 111-158 33-74 (98)
183 cd07255 Glo_EDI_BRP_like_12 Th 33.0 62 0.0013 21.4 3.2 28 146-174 3-31 (125)
184 TIGR03628 arch_S11P archaeal r 32.5 1.6E+02 0.0035 20.0 6.7 50 124-174 42-103 (114)
185 cd07252 BphC1-RGP6_N_like N-te 32.4 49 0.0011 21.9 2.6 28 146-174 3-31 (120)
186 PLN02300 lactoylglutathione ly 32.0 55 0.0012 25.9 3.2 39 135-174 13-53 (286)
187 PRK00393 ribA GTP cyclohydrola 31.7 1.5E+02 0.0033 22.2 5.3 47 119-175 123-169 (197)
188 cd08347 PcpA_C_like C-terminal 31.4 60 0.0013 23.1 3.0 29 146-175 2-31 (157)
189 PF03411 Peptidase_M74: Penici 31.3 19 0.00042 27.9 0.4 9 3-11 75-83 (240)
190 cd07240 ED_TypeI_classII_N N-t 31.2 69 0.0015 20.7 3.2 28 147-175 4-32 (117)
191 cd09013 BphC-JF8_N_like N-term 31.0 71 0.0015 21.1 3.2 29 145-174 6-35 (121)
192 cd07256 HPCD_C_class_II C-term 31.0 66 0.0014 22.9 3.2 28 145-173 3-31 (161)
193 PF12681 Glyoxalase_2: Glyoxal 30.9 64 0.0014 20.5 2.9 18 158-175 7-25 (108)
194 PRK09318 bifunctional 3,4-dihy 30.7 1.2E+02 0.0027 25.5 5.0 50 117-176 307-356 (387)
195 PF06557 DUF1122: Protein of u 30.4 2.2E+02 0.0047 20.8 10.3 80 91-175 25-122 (170)
196 COG2231 Uncharacterized protei 30.1 54 0.0012 24.8 2.6 40 126-173 121-160 (215)
197 cd07241 Glo_EDI_BRP_like_3 Thi 30.0 67 0.0014 21.0 3.0 26 148-174 4-30 (125)
198 COG3607 Predicted lactoylgluta 29.5 38 0.00083 23.4 1.6 16 158-173 15-30 (133)
199 PRK11478 putative lyase; Provi 28.8 52 0.0011 21.9 2.3 28 145-173 6-34 (129)
200 cd07266 HPCD_N_class_II N-term 28.6 62 0.0013 21.3 2.6 29 145-174 4-33 (121)
201 cd08348 BphC2-C3-RGP6_C_like T 28.5 92 0.002 20.9 3.5 26 148-174 4-30 (134)
202 cd07237 BphC1-RGP6_C_like C-te 28.5 85 0.0018 22.1 3.4 30 144-174 8-38 (154)
203 cd07242 Glo_EDI_BRP_like_6 Thi 28.4 81 0.0018 20.9 3.2 28 146-174 2-33 (128)
204 PRK09607 rps11p 30S ribosomal 28.4 2.1E+02 0.0046 20.0 8.5 49 125-174 50-110 (132)
205 cd08364 FosX FosX, a fosfomyci 28.2 90 0.0019 21.2 3.4 29 145-174 4-33 (131)
206 PF13380 CoA_binding_2: CoA bi 28.1 1.2E+02 0.0026 20.4 3.9 80 84-174 29-108 (116)
207 PRK09429 mepA penicillin-insen 27.0 27 0.00059 27.6 0.6 9 3-11 109-117 (275)
208 COG2348 Peptidoglycan interpep 26.7 4.1E+02 0.0088 22.7 9.4 71 122-193 78-163 (418)
209 cd07233 Glyoxalase_I Glyoxalas 26.0 1.3E+02 0.0029 19.4 3.9 26 148-174 3-29 (121)
210 PF03376 Adeno_E3B: Adenovirus 25.9 32 0.00069 20.7 0.6 14 119-132 52-65 (67)
211 PRK10291 glyoxalase I; Provisi 25.9 82 0.0018 21.1 2.9 18 157-174 7-25 (129)
212 PRK09319 bifunctional 3,4-dihy 25.7 1.6E+02 0.0036 26.0 5.1 31 144-176 349-379 (555)
213 PF13530 SCP2_2: Sterol carrie 25.6 3E+02 0.0064 20.8 6.9 73 73-153 12-88 (218)
214 cd08360 MhqB_like_C C-terminal 25.2 1E+02 0.0023 20.8 3.3 28 146-174 4-32 (134)
215 cd07263 Glo_EDI_BRP_like_16 Th 24.8 77 0.0017 20.4 2.5 18 158-175 10-28 (119)
216 PRK06724 hypothetical protein; 24.6 1.1E+02 0.0025 20.8 3.4 29 144-173 6-38 (128)
217 cd07238 Glo_EDI_BRP_like_5 Thi 24.6 70 0.0015 20.7 2.2 16 158-173 12-28 (112)
218 cd08349 BLMA_like Bleomycin bi 24.3 85 0.0018 20.0 2.6 18 158-175 10-28 (112)
219 cd07264 Glo_EDI_BRP_like_15 Th 24.1 1E+02 0.0022 20.2 3.1 17 157-173 11-28 (125)
220 cd07249 MMCE Methylmalonyl-CoA 24.0 61 0.0013 21.3 1.9 26 148-174 3-29 (128)
221 cd07244 FosA FosA, a Fosfomyci 23.7 1.2E+02 0.0027 19.9 3.4 28 146-174 2-30 (121)
222 PF11928 DUF3446: Domain of un 23.7 29 0.00063 22.1 0.2 11 6-17 10-20 (84)
223 PRK04101 fosfomycin resistance 23.6 1.3E+02 0.0029 20.5 3.6 29 145-174 4-33 (139)
224 cd07254 Glo_EDI_BRP_like_20 Th 23.5 1.3E+02 0.0028 19.6 3.5 24 151-174 5-30 (120)
225 PF04015 DUF362: Domain of unk 23.5 1.6E+02 0.0035 21.9 4.2 44 129-173 21-66 (206)
226 cd06588 PhnB_like Escherichia 22.8 1.4E+02 0.003 20.1 3.5 26 150-175 4-30 (128)
227 PLN02831 Bifunctional GTP cycl 22.0 2.2E+02 0.0048 24.5 5.1 31 144-176 379-409 (450)
228 PF10566 Glyco_hydro_97: Glyco 21.8 2.4E+02 0.0052 22.5 5.0 42 130-173 72-124 (273)
229 cd08357 Glo_EDI_BRP_like_18 Th 21.7 1.2E+02 0.0025 19.9 2.9 18 157-174 10-28 (125)
230 PF08901 DUF1847: Protein of u 21.6 1.8E+02 0.0038 21.1 3.8 50 125-175 34-88 (157)
231 PRK08815 GTP cyclohydrolase; P 21.5 2.3E+02 0.005 23.7 5.0 50 117-176 292-341 (375)
232 cd00641 GTP_cyclohydro2 GTP cy 21.0 3E+02 0.0064 20.5 5.2 46 120-175 123-168 (193)
233 COG2266 GTP:adenosylcobinamide 20.9 2.4E+02 0.0052 20.9 4.4 46 129-176 26-71 (177)
234 cd08343 ED_TypeI_classII_C C-t 20.8 1.2E+02 0.0027 20.3 2.9 17 158-174 11-28 (131)
235 PLN03042 Lactoylglutathione ly 20.8 1.5E+02 0.0033 21.9 3.6 27 148-175 30-57 (185)
236 COG1212 KdsB CMP-2-keto-3-deox 20.1 2.7E+02 0.0059 21.6 4.7 48 129-179 27-74 (247)
No 1
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=145.25 Aligned_cols=170 Identities=66% Similarity=1.061 Sum_probs=156.7
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChh
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPE 122 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~ 122 (216)
|.++|+++..|+-.+-.++.+...+.++.+++..++..+++.+.+++..++++.|++.....+....+++++..+.|.|+
T Consensus 1 Mtt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~ 80 (173)
T KOG3234|consen 1 MTTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPD 80 (173)
T ss_pred CCccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechh
Confidence 34689999999999999999999999999999999999999999999889999999999888888888999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc--cceEEEEeccccCCcCCC
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE--EDGLDMRKALSRDVEKKS 200 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~--~~~~~m~k~L~~~~~~~~ 200 (216)
||+.|+|+.||..+++.... .+.-.+-+.|...|.-|+.+|+++||.+-++..+||..+ ++.+.|+|.|+.+.++++
T Consensus 81 ~Rrl~la~~lm~~led~~d~-~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSrD~dkks 159 (173)
T KOG3234|consen 81 YRRLGLAAKLMDTLEDVSDV-DNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSRDVDKKS 159 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhheeeeeeeccchhHHHHHHhcCceEEEeeeeeeccCCCcchHhhhhhhccCcccce
Confidence 99999999999999999887 667778899999999999999999999999999999833 999999999999999999
Q ss_pred CCCCCCCCCCCCc
Q 027933 201 IIPLKRPVTPDEL 213 (216)
Q Consensus 201 ~~~~~~~~~~~~~ 213 (216)
++|.+.++....+
T Consensus 160 i~~~~~~~~~~~~ 172 (173)
T KOG3234|consen 160 IIPLGAPVKCSPL 172 (173)
T ss_pred eecCCCccccccC
Confidence 9999999987654
No 2
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.87 E-value=3.6e-22 Score=138.28 Aligned_cols=151 Identities=38% Similarity=0.624 Sum_probs=137.1
Q ss_pred eEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEec--CCCccceEEEEEEECh
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEG--QGESWHGHVTAVTVSP 121 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~--~~~~~~~~i~~~~V~p 121 (216)
+.||.++.+|+-.+..+.....++.+...++......|++..+|++|.+|+|||++...... ......++|.+++|+.
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 57899999999999999888889999999999999999999999999999999999877554 2334468999999999
Q ss_pred hcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHH-hCCCeEEEEEeccccCccceEEEEecccc
Q 027933 122 EYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYE-KLGYVIYRRVLRYYSGEEDGLDMRKALSR 194 (216)
Q Consensus 122 ~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~-k~GF~~~~~~~~~~~~~~~~~~m~k~L~~ 194 (216)
.||+.|||++||........+..+.+.+.|.|..+|.+|+.+|+ .+||++.+....||.++++.+.|.|+|..
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGedAyaM~~~L~~ 155 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDAYAMRKDLSV 155 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccHHHHHHHHHHHH
Confidence 99999999999999888877767889999999999999999999 79999999999999999999999999964
No 3
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=129.99 Aligned_cols=140 Identities=24% Similarity=0.402 Sum_probs=118.9
Q ss_pred CcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHH
Q 027933 52 NDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKK 131 (216)
Q Consensus 52 ~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ 131 (216)
..++.+..+....+.+++...........+++.++++.|.++..||++............++|..++|+++|||+|||++
T Consensus 25 ~~l~~im~Li~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~a 104 (165)
T KOG3139|consen 25 EYLADIMRLIDKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKA 104 (165)
T ss_pred HHHHHHHHHHhhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHH
Confidence 33445667777777777777666666778889999998655558999988765554455799999999999999999999
Q ss_pred HHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEecc
Q 027933 132 LMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKAL 192 (216)
Q Consensus 132 ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L 192 (216)
|++.+++.+++ +|+..+.|++...|.+|.++|+++||+..++...||-++.+.+.|...+
T Consensus 105 Lvr~aId~m~~-~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng~dA~rl~L~~ 164 (165)
T KOG3139|consen 105 LVRKAIDAMRS-RGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNGMDALRLKLFF 164 (165)
T ss_pred HHHHHHHHHHH-CCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECCcceEEEEeec
Confidence 99999999999 9999999999999999999999999999999999998888888887654
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.85 E-value=3.5e-20 Score=132.41 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=102.3
Q ss_pred CceEEEecCcCcHHHHHHhhhhhccccchhhH----HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecC--CCccceEEE
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTETFNMSF----YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQ--GESWHGHVT 115 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~--~~~~~~~i~ 115 (216)
+++.||+++.+|++.+.++..+.....+.... +.+.+......++++. .++++||++.+..... ...+.+++.
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~-~~~~ivG~~~~~~~~~~~~~~~~~~i~ 80 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLAL-LDGEVVGMIGLHLQFHLHHVNWIGEIQ 80 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEE-ECCEEEEEEEEEecccccccchhheeh
Confidence 46889999999999999997665544333222 3444444444566666 7899999998765322 122235788
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
.++|+|++||+|+|+.|++++++++++ .|+..+.+.+...|..|++||+|+||+..+
T Consensus 81 ~l~v~p~~rg~GiG~~Ll~~~~~~a~~-~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 81 ELVVMPQARGLNVGSKLLAWAEEEARQ-AGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred eeEECHHHcCCCHHHHHHHHHHHHHHH-cCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 999999999999999999999999999 899999999999999999999999998764
No 5
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.85 E-value=1.9e-19 Score=129.14 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=110.0
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChh
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPE 122 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~ 122 (216)
|+.||+++.+|++.+..+........|....+.... ......+.+. .+|++||++.+..... .+.+..++|+|+
T Consensus 1 ~~~iR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~vG~~~~~~~~~----~~~~~~i~v~~~ 74 (146)
T PRK09491 1 MNTISSLTPADLPAAYHIEQRAHAFPWSEKTFASNQ-GERYLNLKLT-VNGQMAAFAITQVVLD----EATLFNIAVDPD 74 (146)
T ss_pred CcchhcCChhhhHHHHHHHHhcCCCCCCHHHHHHHH-hcCceEEEEE-ECCeEEEEEEEEeecC----ceEEEEEEECHH
Confidence 468999999999999999766554445443333221 1112223334 6899999998765432 256778999999
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecccc--Cc-cceEEEEecc
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYS--GE-EDGLDMRKAL 192 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~--~~-~~~~~m~k~L 192 (216)
|||+|+|+.+++.+++.+++ .++..+.+.+...|.+|.+||+|+||+..+..+.++. ++ .|.+.|.+.|
T Consensus 75 ~rg~G~g~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 75 YQRQGLGRALLEHLIDELEK-RGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred HccCCHHHHHHHHHHHHHHH-CCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 99999999999999999988 8999999999999999999999999999988877763 33 6788887653
No 6
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.84 E-value=4.8e-19 Score=128.93 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=107.0
Q ss_pred ceEEEecCcCcHHHHHHhhhhh--cc-----ccchhhHHHHHHhcCC-CeEEEEeccCCcEEEEEEEEEecCCCccceEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDH--LT-----ETFNMSFYMTYLARWP-DYFHVAEGPGNRIMGYIMGKVEGQGESWHGHV 114 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~--~~-----~~~~~~~~~~~~~~~~-~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i 114 (216)
.+.||+++.+|++.+.++..+. +. .......+...+.... ...+++. .+|++||++.+.............
T Consensus 3 ~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~vG~~~~~~~~~~~~~~~~~ 81 (162)
T PRK10140 3 EIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVAC-IDGDVVGHLTIDVQQRPRRSHVAD 81 (162)
T ss_pred ccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEE-ECCEEEEEEEEecccccccceEEE
Confidence 4789999999999999997642 11 1112223444444323 3455665 689999999887543221111222
Q ss_pred EEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc-cCc--cceEEEEe
Q 027933 115 TAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY-SGE--EDGLDMRK 190 (216)
Q Consensus 115 ~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~-~~~--~~~~~m~k 190 (216)
..++|+|+|||+|+|++|++.+++++++..+...+.+.+...|.+|++||+|+||+..+....++ .++ .+...|.|
T Consensus 82 ~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~~ 160 (162)
T PRK10140 82 FGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR 160 (162)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEEe
Confidence 36999999999999999999999999885689999999999999999999999999999877554 222 46656654
No 7
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.82 E-value=1.1e-18 Score=122.36 Aligned_cols=130 Identities=25% Similarity=0.365 Sum_probs=105.6
Q ss_pred cHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHH
Q 027933 53 DLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKL 132 (216)
Q Consensus 53 d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~l 132 (216)
|++++.++..+.+...+....+...+......++++. +++++||++.+..... ...+..++|+|+|||+|+|++|
T Consensus 1 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vg~~~~~~~~~----~~~i~~~~v~~~~rg~G~g~~l 75 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTEAQFAEELANYHLCYLLAR-IGGKVVGYAGVQIVLD----EAHILNIAVKPEYQGQGIGRAL 75 (131)
T ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHhcCCCceEEEEe-cCCeEEEEEEEEecCC----CeEEEEEEECHHHcCCCHHHHH
Confidence 5778888888888877776667766654444445555 7899999998765432 2677899999999999999999
Q ss_pred HHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc-cceEEE
Q 027933 133 MNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE-EDGLDM 188 (216)
Q Consensus 133 l~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~-~~~~~m 188 (216)
++++++++++ .+...+.+.+...|..+++||+|+||+.++....++.++ .+.+.|
T Consensus 76 l~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 76 LRELIDEAKG-RGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred HHHHHHHHHH-cCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 9999999998 889999999999999999999999999999887777654 455443
No 8
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.81 E-value=6e-19 Score=130.27 Aligned_cols=150 Identities=25% Similarity=0.419 Sum_probs=123.8
Q ss_pred CceEEEecCcCcHH--HHHHhhhhhcc--ccchhhHHHHHHhcCCCeEEEEecc--CC----cEEEEEEEEEecCCC--c
Q 027933 42 KMTTIRRFCCNDLL--RFTSVNLDHLT--ETFNMSFYMTYLARWPDYFHVAEGP--GN----RIMGYIMGKVEGQGE--S 109 (216)
Q Consensus 42 ~~i~ir~~~~~d~~--~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~--~g----~lvG~~~~~~~~~~~--~ 109 (216)
.++.++.++..|+. .+..+....+. ..|....+...+..+....+++... ++ +++|++......... .
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 89 (177)
T COG0456 10 DKVTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRPSAD 89 (177)
T ss_pred cceehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCcccc
Confidence 35788999999988 88888777777 5788888999999988888888832 33 599999886332211 1
Q ss_pred cceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCc-eEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccc-eEE
Q 027933 110 WHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKA-YFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEED-GLD 187 (216)
Q Consensus 110 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~-~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~-~~~ 187 (216)
..++|..++|+|+|||+|||++|++.+++.+.+ .+. ..+.|.|..+|.+|++||+|+||+..+...+||.+..+ .+.
T Consensus 90 ~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~-~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~~~a~~ 168 (177)
T COG0456 90 HEGHIYNLAVDPEYRGRGIGRALLDEALERLRE-RGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGNGDALL 168 (177)
T ss_pred CccEEEEEEEChHhhcCCHHHHHHHHHHHHHHh-cCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCcchhHH
Confidence 148899999999999999999999999999998 776 89999999999999999999999999999999988754 666
Q ss_pred EEecc
Q 027933 188 MRKAL 192 (216)
Q Consensus 188 m~k~L 192 (216)
|.+.+
T Consensus 169 ~~~~~ 173 (177)
T COG0456 169 MLKML 173 (177)
T ss_pred HHHhh
Confidence 65543
No 9
>PRK03624 putative acetyltransferase; Provisional
Probab=99.81 E-value=2.8e-18 Score=121.54 Aligned_cols=126 Identities=27% Similarity=0.365 Sum_probs=99.2
Q ss_pred ceEEEecCcCcHHHHHHhhhhhc-cccchhh--HHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHL-TETFNMS--FYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTV 119 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V 119 (216)
++.+|+++.+|++++.+++...- ...|... .+...+......++++. .++++||++.+..... ...+..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~vG~~~~~~~~~----~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAE-VGGEVVGTVMGGYDGH----RGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEE-cCCcEEEEEEeeccCC----CceEEEEEE
Confidence 47899999999999999976651 1222221 23333333445566666 7899999987654322 256778999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+|+|||+|+|+.|++.+++++++ .+++.+.+.+...|..+++||+|+||+..+.
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~-~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIA-RGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 99999999999999999999998 8999999999999999999999999998765
No 10
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.81 E-value=1.8e-18 Score=135.81 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=113.1
Q ss_pred CceEEEecCcCcHHHHHHhhhhhcccc---ch-hhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEE
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTET---FN-MSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAV 117 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~---~~-~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~ 117 (216)
+.+.||+++++|++++.++..+.+... +. ..++...+. ....++++. .+|++||++.+..... ...+++..+
T Consensus 114 ~~~~IR~a~~~D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~~-~~~~~~v~~-~~g~iVG~~~~~~~~~--~~~~eI~~i 189 (266)
T TIGR03827 114 EGFTLRIATEDDADAMAALYRKVFPTYPFPIHDPAYLLETMK-SNVVYFGVE-DGGKIIALASAEMDPE--NGNAEMTDF 189 (266)
T ss_pred CceEEEECCHHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCcEEEEEE-ECCEEEEEEEEecCCC--CCcEEEEEE
Confidence 458999999999999999988766421 11 122333333 334455666 6899999988643322 224789999
Q ss_pred EEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc--cCc-cceEEEEecc
Q 027933 118 TVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY--SGE-EDGLDMRKAL 192 (216)
Q Consensus 118 ~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~--~~~-~~~~~m~k~L 192 (216)
+|+|+|||+|+|++|++.+++++++ .|+..+.+.+...|.+|+++|+|+||+..++..+.. .+. .+..++.|.|
T Consensus 190 ~V~P~yRG~GiG~~Ll~~l~~~a~~-~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 190 ATLPEYRGKGLAKILLAAMEKEMKE-KGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHH-CCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 9999999999999999999999998 999999999999999999999999999999887543 222 7777777654
No 11
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.79 E-value=1.8e-17 Score=124.43 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=109.1
Q ss_pred ccCCCCceEEEecCcCcHHHHHHhhhh--hccccchh---------h-------HHHHHHhcCCCeEEEEec-cCCcEEE
Q 027933 37 VPNSRKMTTIRRFCCNDLLRFTSVNLD--HLTETFNM---------S-------FYMTYLARWPDYFHVAEG-PGNRIMG 97 (216)
Q Consensus 37 ~~~~~~~i~ir~~~~~d~~~l~~l~~~--~~~~~~~~---------~-------~~~~~~~~~~~~~~v~~~-~~g~lvG 97 (216)
++..++.+.||+++++|++.+.++..+ .+...|.. . .+...........+++.+ .++++||
T Consensus 11 ~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG 90 (194)
T PRK10809 11 VRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIG 90 (194)
T ss_pred eeeccCcEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEE
Confidence 333445689999999999999998664 22212210 0 112222222233444432 4789999
Q ss_pred EEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 98 YIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 98 ~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
.+.+........ ......++|+|+|||+|+|+++++.++++++++.+++++.+.|...|.+|+++|+|+||+.++..+.
T Consensus 91 ~i~l~~~~~~~~-~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~ 169 (194)
T PRK10809 91 VANFSNVVRGSF-HACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAKD 169 (194)
T ss_pred EEEEEeecCCCe-eeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeecc
Confidence 998875433221 1233478899999999999999999999999867999999999999999999999999999998776
Q ss_pred ccc-Cc--cceEEEEec
Q 027933 178 YYS-GE--EDGLDMRKA 191 (216)
Q Consensus 178 ~~~-~~--~~~~~m~k~ 191 (216)
++. ++ .|.+.|.+.
T Consensus 170 ~~~~~g~~~d~~~~~~~ 186 (194)
T PRK10809 170 YLLIDGQWRDHVLTALT 186 (194)
T ss_pred ccccCCeEEEEEEeeee
Confidence 543 33 566677553
No 12
>PTZ00330 acetyltransferase; Provisional
Probab=99.79 E-value=2e-17 Score=118.55 Aligned_cols=129 Identities=25% Similarity=0.274 Sum_probs=93.2
Q ss_pred ceEEEecCcCcHHHHHHhhhhhcccc-chhhHHHHHHhc----CCCeEEEEeccCCcEEEEEEEEEecC---CCccceEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTET-FNMSFYMTYLAR----WPDYFHVAEGPGNRIMGYIMGKVEGQ---GESWHGHV 114 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~-~~~~~~~~~~~~----~~~~~~v~~~~~g~lvG~~~~~~~~~---~~~~~~~i 114 (216)
.+.||+++++|++++.++..+..... ............ .....+++...+|++||++.+..... .....+++
T Consensus 6 ~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i 85 (147)
T PTZ00330 6 SLELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHI 85 (147)
T ss_pred eEEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEE
Confidence 47899999999999999976654322 222222222221 11122333337899999998764322 11123678
Q ss_pred EEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 115 TAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 115 ~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..++|+|+|||+|+|++|++++++++++ .++..+.+. .|.+|++||+|+||+.....
T Consensus 86 ~~~~V~~~~rg~Gig~~l~~~~~~~a~~-~~~~~l~l~---~n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 86 EDVVVDPSYRGQGLGRALISDLCEIARS-SGCYKVILD---CTEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEe---cChHHHHHHHHCCCEEeceE
Confidence 8999999999999999999999999998 888887665 47799999999999987653
No 13
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.79 E-value=7.3e-18 Score=126.23 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=99.8
Q ss_pred eEEEecCcCcHHHHHHhhhhhcc-----ccchhh-----HHH----HHHhcC-CCeEEEEeccCCcEEEEEEEEEecCCC
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLT-----ETFNMS-----FYM----TYLARW-PDYFHVAEGPGNRIMGYIMGKVEGQGE 108 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~-----~~~~~~-----~~~----~~~~~~-~~~~~v~~~~~g~lvG~~~~~~~~~~~ 108 (216)
+.||+++.+|++.+.++..+.+. ..|..+ ++. ...... ....+++...+|++||++.+......
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~~~- 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELNDT- 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecCCC-
Confidence 58999999999999999877642 122111 111 121122 22334444368999999988754332
Q ss_pred ccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 109 SWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 109 ~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
.+++..++|+|++||+|+|++|++++++++++ .|+..+.+.|...|.+|++||+|+||+.+++...
T Consensus 123 --~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~-~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~~ 188 (191)
T TIGR02382 123 --DARIGLLAVFPGAQSRGIGAELMQTALNWCYA-RGLTRLRVATQMGNTAALRLYIRSGANIESTAYW 188 (191)
T ss_pred --ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCHHHHHHHHHcCCccccceee
Confidence 36888899999999999999999999999998 9999999999999999999999999999877543
No 14
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.77 E-value=1.3e-17 Score=121.00 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=95.3
Q ss_pred EEecCcCcHHHHHHhhhhhccccchhhH-HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcc
Q 027933 46 IRRFCCNDLLRFTSVNLDHLTETFNMSF-YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYR 124 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~r 124 (216)
||+++.+|++++.++..+.......... +...........+++.+.+|++||++.+..... ......+..++|+|++|
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~-~~~~~~i~~l~V~p~~r 79 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPD-RPDVLFVWQVAVDPRAR 79 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCC-CCCeEEEEEEEEChHhc
Confidence 5789999999999998776432211111 112222333455666645789999987654332 22246788999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 125 RQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 125 g~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
|+|+|++|++.++++++. .++..+.+.|...|.+|++||+|+||+...
T Consensus 80 g~GiG~~L~~~l~~~a~~-~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 80 GKGLARRLLEALLERVAC-ERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 999999999999999998 788999999999999999999999998654
No 15
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.77 E-value=3e-17 Score=123.23 Aligned_cols=130 Identities=12% Similarity=0.209 Sum_probs=100.3
Q ss_pred eEEEecCcCcHHHHHHhhhhhccc-----cchh-----hHHHHHHh----c-CCCeEEEEeccCCcEEEEEEEEEecCCC
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTE-----TFNM-----SFYMTYLA----R-WPDYFHVAEGPGNRIMGYIMGKVEGQGE 108 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~-----~~~~-----~~~~~~~~----~-~~~~~~v~~~~~g~lvG~~~~~~~~~~~ 108 (216)
..||+++++|++.+.++..+.+.. .|.. .++...+. . ....++++.+.+|++||++.+......
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~~~- 125 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELNDT- 125 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecCCC-
Confidence 568999999999999997765432 1211 11222221 1 122455566467899999988754332
Q ss_pred ccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 109 SWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 109 ~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
.+++..++|+|+|||+|+|++|++.+++++++ .|+..+.+.|...|.+|++||+|+||+.+++...
T Consensus 126 --~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~-~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~~ 191 (194)
T PRK10975 126 --DARIGLLAVFPGAQGRGIGARLMQAALNWCQA-RGLTRLRVATQMGNLAALRLYIRSGANIESTAYW 191 (194)
T ss_pred --ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEee
Confidence 37788899999999999999999999999998 9999999999999999999999999999987643
No 16
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.76 E-value=4.6e-17 Score=117.72 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=96.2
Q ss_pred EEecCcCcHHHHHHhhhhhc-----ccc---chhhH----HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceE
Q 027933 46 IRRFCCNDLLRFTSVNLDHL-----TET---FNMSF----YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGH 113 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~-----~~~---~~~~~----~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~ 113 (216)
||+++.+|++++..+..+.. ... ..... +...........+++...+|++||++.+..... .. ...
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~-~~-~~~ 78 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDP-YN-HTA 78 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSS-GT-TEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeec-cC-CEE
Confidence 79999999999999976421 111 11112 222222334555555536999999998886544 22 344
Q ss_pred EEEEEEChhcccCCHHHHHHHHHHHHH-hccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecccc
Q 027933 114 VTAVTVSPEYRRQQLAKKLMNLLEDIS-DKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYS 180 (216)
Q Consensus 114 i~~~~V~p~~rg~GiG~~ll~~~~~~a-~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~ 180 (216)
...+.|.|++|++|+|+.|++.++++| .+ .|++.+.+.|...|.+|++||+++||+.+++.+.++.
T Consensus 79 ~~~~~v~~~~~~~gig~~l~~~l~~~af~~-~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~ 145 (155)
T PF13420_consen 79 ELSIYVSPDYRGKGIGRKLLDELIEYAFKE-LGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIF 145 (155)
T ss_dssp EEEEEEEGGGTTSSHHHHHHHHHHHHH-HH-TT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred EEeeEEChhHCCCcHHHHHHHHHHHHhhhc-cCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEE
Confidence 445888899999999999999999999 66 9999999999999999999999999999999886543
No 17
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.75 E-value=9.5e-17 Score=111.04 Aligned_cols=134 Identities=17% Similarity=0.116 Sum_probs=102.2
Q ss_pred ceEEEecCcCcHHHHHHhhhhh--cc-----ccchhhHHHH--HHhcCCCeEEEEe--ccCCcEEEEEEEEEecCC--Cc
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDH--LT-----ETFNMSFYMT--YLARWPDYFHVAE--GPGNRIMGYIMGKVEGQG--ES 109 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~--~~-----~~~~~~~~~~--~~~~~~~~~~v~~--~~~g~lvG~~~~~~~~~~--~~ 109 (216)
.++||.++++|.+.+..+..+. |. .......+.. .++.+-..++++. ..+++++|++.+.+.-+. ..
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k 82 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGK 82 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccccc
Confidence 4789999999999999996553 11 1111222333 2333334444443 238999999988764332 22
Q ss_pred cceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 110 WHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 110 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
...++..++|.|+|||+|+|+.|++.+-+.|.+ .|+.++...|...|.+|+.||++.|++......-
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~-~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W~l 149 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEADK-LGTPRVEWVVLDWNHRAILLYEKVGAQDLKEWRL 149 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHHH-cCCCcEEEEEeccchhHHHHHHHhCccccceeEE
Confidence 347899999999999999999999999999999 9999999999999999999999999998877443
No 18
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2.6e-16 Score=113.25 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=115.2
Q ss_pred eEEEecCcCcHHHHHHhhhhhcccc--------chhhHHHHHHhcCCC---eEEEEeccCCcEEEEEEEEEecCCC-ccc
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTET--------FNMSFYMTYLARWPD---YFHVAEGPGNRIMGYIMGKVEGQGE-SWH 111 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~--------~~~~~~~~~~~~~~~---~~~v~~~~~g~lvG~~~~~~~~~~~-~~~ 111 (216)
+.||+++.+|++.+.++.+..+... .....+...+..... .++|+..++|+++|++.+.+..... ...
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 6799999999999999977654321 122234444443332 4666765669999999887655433 223
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecc--ccCc-cceEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRY--YSGE-EDGLDM 188 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~--~~~~-~~~~~m 188 (216)
.....++|+|+.||+|+|++|++.+++.+.. .|+..+...+..+|.+|+++++++||+.++..+.. ..+. .|..+|
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~-~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~~ 160 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEARA-LGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVLM 160 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHHHh-CCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeeee
Confidence 4567999999999999999999999999999 99999999999999999999999999999987643 2233 777777
Q ss_pred Eecccc
Q 027933 189 RKALSR 194 (216)
Q Consensus 189 ~k~L~~ 194 (216)
.+.|..
T Consensus 161 ~~~l~~ 166 (169)
T COG1247 161 QLLLEE 166 (169)
T ss_pred ehhhcc
Confidence 777754
No 19
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.74 E-value=3.3e-16 Score=116.03 Aligned_cols=150 Identities=5% Similarity=-0.048 Sum_probs=108.0
Q ss_pred CceEEEecCcCcHHHHHHhhhh--hcc---ccch-----hhH----HHHHH---hcCCCeEEEEeccCCcEEEEEEEEEe
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLD--HLT---ETFN-----MSF----YMTYL---ARWPDYFHVAEGPGNRIMGYIMGKVE 104 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~--~~~---~~~~-----~~~----~~~~~---~~~~~~~~v~~~~~g~lvG~~~~~~~ 104 (216)
+.+.+|+++.+|++.+..+..+ ... ..+. ... +.... .......+++. .+|++||++.+...
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~-~~~~~iG~~~l~~~ 87 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIF-KEDELIGVLSFNRI 87 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEE-ECCEEEEEEEEEee
Confidence 3589999999999999999632 110 0111 111 22221 11112345665 58999999987654
Q ss_pred cCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc-cCc-
Q 027933 105 GQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY-SGE- 182 (216)
Q Consensus 105 ~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~-~~~- 182 (216)
... ...+.+ .++++|+|||+|+|+++++.+++++++..+++++.+.+...|.+|+++++|+||+.+++.+... .++
T Consensus 88 ~~~-~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~g~ 165 (179)
T PRK10151 88 EPL-NKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLNGA 165 (179)
T ss_pred ccC-CCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEECCE
Confidence 322 123555 5689999999999999999999999975789999999999999999999999999999876432 233
Q ss_pred -cceEEEEecccc
Q 027933 183 -EDGLDMRKALSR 194 (216)
Q Consensus 183 -~~~~~m~k~L~~ 194 (216)
.|...|.+.+..
T Consensus 166 ~~D~~~~~~~~~~ 178 (179)
T PRK10151 166 YDDVNLYARIIDS 178 (179)
T ss_pred EEEEEEEEEeecC
Confidence 778888776643
No 20
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.74 E-value=2.3e-16 Score=117.58 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=108.0
Q ss_pred ceEEEecCcCcHHHHHHhhhhhc-cccc---h--h-----hHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccc
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHL-TETF---N--M-----SFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWH 111 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~-~~~~---~--~-----~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~ 111 (216)
.+.+|+++.+|++.+.++..+.. ...| . . .++...........+++. .+|++||++.+....... ..
T Consensus 6 ~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~iG~~~~~~~~~~~-~~ 83 (186)
T PRK15130 6 SVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVE-CDGEKAGLVELVEINHVH-RR 83 (186)
T ss_pred eeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEE-ECCEEEEEEEEEeecCCC-Ce
Confidence 47899999999999999865431 1111 1 0 012233334445566666 689999999876543221 12
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecccc-Cc--cceEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYS-GE--EDGLDM 188 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~--~~~~~m 188 (216)
+.+ .++|+|+|||+|+|+++++.+++++++..++.++.+.+...|.+|++||+|+||+.++..+..+. ++ .|.+.|
T Consensus 84 ~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~~~~ 162 (186)
T PRK15130 84 AEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNTIRM 162 (186)
T ss_pred EEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEEEEE
Confidence 444 69999999999999999999999998768999999999999999999999999999998775443 33 566666
Q ss_pred Eecc
Q 027933 189 RKAL 192 (216)
Q Consensus 189 ~k~L 192 (216)
.+.-
T Consensus 163 ~~~~ 166 (186)
T PRK15130 163 CIFQ 166 (186)
T ss_pred EeeH
Confidence 5544
No 21
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.74 E-value=1.8e-16 Score=135.52 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=105.2
Q ss_pred CceEEEec-CcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEec-cCCcEEEEEEEEEec---CCCccceEEEE
Q 027933 42 KMTTIRRF-CCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEG-PGNRIMGYIMGKVEG---QGESWHGHVTA 116 (216)
Q Consensus 42 ~~i~ir~~-~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~g~lvG~~~~~~~~---~~~~~~~~i~~ 116 (216)
..+.||++ +.+|++++.++..+.....+....+...+......++++.+ .+|++||++.+.... ........+..
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~ 160 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWC 160 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEE
Confidence 35899997 68999999999887654444544444444444456677764 379999998754221 11222367889
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
++|+|+|||+|+|++|++.+++++++ .|+..+.+.|..+|.+|++||+|+||+.+....
T Consensus 161 l~V~P~~Rg~GIG~~Ll~~l~e~a~~-~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 161 LAVDPQAAHPGVGEALVRALAEHFQS-RGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 99999999999999999999999999 999999999999999999999999999887654
No 22
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.73 E-value=9.2e-17 Score=103.80 Aligned_cols=79 Identities=28% Similarity=0.400 Sum_probs=73.0
Q ss_pred cCCcEEEEEEEEEecCCC--ccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCC
Q 027933 91 PGNRIMGYIMGKVEGQGE--SWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLG 168 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~~~~--~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~G 168 (216)
++|++||++.+....... ...+++..++|+|+|||+|+|+.|++++++.+++ .++..+.+.+...|..+++||+|+|
T Consensus 3 ~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~g~~~i~~~~~~~n~~~~~~~~k~G 81 (83)
T PF00583_consen 3 EDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-RGIKRIYLDVSPDNPAARRFYEKLG 81 (83)
T ss_dssp ETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-TTESEEEEEEETTGHHHHHHHHHTT
T ss_pred CCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-cCccEEEEEEeCCCHHHHHHHHHcC
Confidence 799999999988766542 3468999999999999999999999999999999 9999999999999999999999999
Q ss_pred Ce
Q 027933 169 YV 170 (216)
Q Consensus 169 F~ 170 (216)
|+
T Consensus 82 f~ 83 (83)
T PF00583_consen 82 FE 83 (83)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 23
>PRK10514 putative acetyltransferase; Provisional
Probab=99.73 E-value=3e-16 Score=112.18 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=87.2
Q ss_pred ceEEEecCcCcHHHHHHhhhhhcc------ccchhhHHHHHHhc--CCCeEEEEeccCCcEEEEEEEEEecCCCccceEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLT------ETFNMSFYMTYLAR--WPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHV 114 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~------~~~~~~~~~~~~~~--~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i 114 (216)
|+.||+++.+|++++.+++.+.+. .......+...+.. ....++++...++++||++.+.. ..+
T Consensus 1 m~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~--------~~~ 72 (145)
T PRK10514 1 MISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG--------GHM 72 (145)
T ss_pred CceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec--------CcE
Confidence 478999999999999998765321 11112222222211 12233444436899999987642 235
Q ss_pred EEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 115 TAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 115 ~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
..++|+|+|||+|+|++|++++++.+. .+.+.+...|.+|++||+|+||+..++...
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~~------~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~ 129 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLHP------ELTTDVNEQNEQAVGFYKKMGFKVTGRSEV 129 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhcc------ccEEEeecCCHHHHHHHHHCCCEEeccccc
Confidence 579999999999999999999988653 367888999999999999999999887553
No 24
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.73 E-value=3.2e-16 Score=113.06 Aligned_cols=130 Identities=22% Similarity=0.154 Sum_probs=94.7
Q ss_pred EEecC-cCcHHHHHHhhhhhc----c-ccch---hhHHHHHHh-cCCCeEEEEeccCCcEEEEEEEEEecCC---Cccce
Q 027933 46 IRRFC-CNDLLRFTSVNLDHL----T-ETFN---MSFYMTYLA-RWPDYFHVAEGPGNRIMGYIMGKVEGQG---ESWHG 112 (216)
Q Consensus 46 ir~~~-~~d~~~l~~l~~~~~----~-~~~~---~~~~~~~~~-~~~~~~~v~~~~~g~lvG~~~~~~~~~~---~~~~~ 112 (216)
+|+++ .+|++.|.++..+.. . ..+. ...+.+.+. ......+|+. .+|+++|++.+...... .....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~dg~~~g~~~~~~~~~~~~~~~~~~ 79 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAE-DDGEPIGYFEIYWPDEDYDADDGDR 79 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEE-ETTEEEEEEEEEEGGGSS---TTEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEE-ECCEEEEEEEEecccccccCCCCEE
Confidence 68999 999999999975542 1 1121 122444443 3444566776 89999999988642221 12245
Q ss_pred EEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 113 HVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 113 ~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.+..+++++++||+|+|+.+++.+++.++++.++..+.+.+...|.+|+++|+|+||+.+++..
T Consensus 80 ~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 80 GIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 6788899999999999999999999999984589999999999999999999999999999874
No 25
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.72 E-value=2.8e-16 Score=115.24 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=91.5
Q ss_pred CceEEEecCcCcHHHHHHhhhhhccccch-hhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEC
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTETFN-MSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVS 120 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~ 120 (216)
.++.+|+++++|.+++.++......+... .......+.. ...++++.+.+|++||++.+...... .+.+..++|+
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~~~~iiG~~~~~~~~~~---~~~i~~l~V~ 79 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEA-VQEFWVAEHLDGEVVGCGALHVMWED---LAEIRTVAVD 79 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhh-cCcEEEEEecCCcEEEEEEEeecCCC---ceEEEEEEEC
Confidence 35899999999999999997654332111 1112222222 23455655468999999887654322 3778899999
Q ss_pred hhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 121 PEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 121 p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
|+|||+|+|++|++++++++++ .|+..+.+.+. +.+||+|+||+..+.
T Consensus 80 p~~rgkGiG~~Ll~~~~~~a~~-~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 80 PAARGRGVGHAIVERLLDVARE-LGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred HHHhCCCHHHHHHHHHHHHHHH-cCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 9999999999999999999999 99999877654 368999999998764
No 26
>PRK07757 acetyltransferase; Provisional
Probab=99.72 E-value=2.4e-16 Score=113.67 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=90.3
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChh
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPE 122 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~ 122 (216)
|+.||+++.+|++.+.++..+.....+........+......++++. .+|++||++.+...... .+++..++|+|+
T Consensus 1 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~lvG~~~l~~~~~~---~~~i~~v~V~p~ 76 (152)
T PRK07757 1 MMEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAE-EEGEIVGCCALHILWED---LAEIRSLAVSED 76 (152)
T ss_pred CceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEE-ECCEEEEEEEEEeccCC---ceEEEEEEECHH
Confidence 46899999999999999976543322211111122222223456666 68999999988764332 367889999999
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
|||+|+|++|++.+++.+.+ .++..+.+.+. +.+||+|+||+..+.
T Consensus 77 ~rg~Glg~~Ll~~l~~~a~~-~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 77 YRGQGIGRMLVEACLEEARE-LGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred HcCCCHHHHHHHHHHHHHHh-CCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 99999999999999999998 89888765442 358999999999876
No 27
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.72 E-value=7.2e-16 Score=110.92 Aligned_cols=128 Identities=23% Similarity=0.221 Sum_probs=93.1
Q ss_pred ceEEEecCcCcHH-HHHHhhhhhcc-ccchhhHHHHHHh---c-C-CCeEEEEec-cCCcEEEEEEEEEec---CCCccc
Q 027933 43 MTTIRRFCCNDLL-RFTSVNLDHLT-ETFNMSFYMTYLA---R-W-PDYFHVAEG-PGNRIMGYIMGKVEG---QGESWH 111 (216)
Q Consensus 43 ~i~ir~~~~~d~~-~l~~l~~~~~~-~~~~~~~~~~~~~---~-~-~~~~~v~~~-~~g~lvG~~~~~~~~---~~~~~~ 111 (216)
.+.||+++.+|.+ .+..+..+... ..+....+.+.+. . . ....+++.+ .++++||++.+.... ......
T Consensus 6 ~~~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~ 85 (150)
T PLN02706 6 KFKVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCGKV 85 (150)
T ss_pred ceEEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCCcE
Confidence 4789999999988 48887665432 2344333433332 2 2 223445542 268999998775321 111223
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+++..++|+|+|||+|||+.|++.+++++++ .|+..+.+.+...|. +||+|+||+..+.
T Consensus 86 ~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~-~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 86 GHIEDVVVDSAARGKGLGKKIIEALTEHARS-AGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 5778899999999999999999999999998 999999999999885 5999999998764
No 28
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.71 E-value=4.9e-16 Score=108.61 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=89.4
Q ss_pred EEEecCcCcHHHHHHhhhhhccccchhhH----HHHHHhcCCCeEEEEeccCCcEEEEEEEEEec----CCCccceEEEE
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSF----YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEG----QGESWHGHVTA 116 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~----~~~~~~~~i~~ 116 (216)
+||+++++|.+++.++....|........ +..... +..++++. ++|++||.+.+.+.. ......+++..
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~ 77 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYG--PGRCVVAE-DDGKIVGHVGLIPRRLSVGGKKFKAAYIGD 77 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH--TTEEEEEE-ETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccC--cCcEEEEE-ECCEEEEEEEEEEEEEEECCEEEEEEEEEE
Confidence 48999999999999999999987766542 222222 35677777 699999999876542 12223578999
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEE
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIY 172 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~ 172 (216)
++|+|+|||+|+|++|++++++.+++ .|+..+.+.. ....||+|+||+.+
T Consensus 78 v~v~p~~R~~Gl~~~L~~~~~~~~~~-~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 78 VAVDPEYRGRGLGRQLMRALLERARE-RGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEE-GGGTTSSHHHHHHHHHHHHHHH-TT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHh-CCCCEEEEec-----CChhhhhcCCCEEC
Confidence 99999999999999999999999999 7888776644 23689999999864
No 29
>PRK10314 putative acyltransferase; Provisional
Probab=99.69 E-value=1.5e-16 Score=114.76 Aligned_cols=138 Identities=11% Similarity=0.103 Sum_probs=101.7
Q ss_pred EEecCcCcHHHHHHhhhhhccccchhhHHHHHHhc----CCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEECh
Q 027933 46 IRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLAR----WPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSP 121 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p 121 (216)
+..++.+++.++..+..+.|......+.. . ++. .....+++. .++++||++.+..... ....+++..++|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~-e-~D~~d~~~~~~h~~~~-~~~~~vg~~r~~~~~~-~~~~~~i~rv~V~~ 84 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ-D-IDGDDLTGDNRHILGW-KNDELVAYARILKSDD-DLEPVVIGRVIVSE 84 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc-c-cCCCCCCCCcEEEEEE-ECCEEEEEEEEecCCC-CCCCEEEEEEEECH
Confidence 35567778888999999888755444432 1 222 123455555 6899999998876432 22237899999999
Q ss_pred hcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEecc
Q 027933 122 EYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKAL 192 (216)
Q Consensus 122 ~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L 192 (216)
+|||+|+|++|++.+++++++..+...+.+.+ +..+..||+|+||+.++. .|...+.+.+.|.|.+
T Consensus 85 ~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~--~f~~~Gi~h~~M~~~~ 150 (153)
T PRK10314 85 ALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE--VYEEDGIPHIGMAREV 150 (153)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC--ccccCCCCcHhhhhhh
Confidence 99999999999999999988733666777754 457889999999999876 4566667788887765
No 30
>PRK09831 putative acyltransferase; Provisional
Probab=99.68 E-value=4.4e-16 Score=111.75 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=90.6
Q ss_pred eEEEecCcCcHHHHHHhhhhhcccc----chhhH-----------HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCC
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTET----FNMSF-----------YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGE 108 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~ 108 (216)
+.||+++++|++.+.++..+.+... +.... +...+. ...++++. .+|++||++.+..
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~~iiG~~~~~~----- 72 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA--KSQVRVAV-INAQPVGFITCIE----- 72 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh--cCceEEEE-ECCEEEEEEEehh-----
Confidence 3689999999999999976654321 11111 122222 23456665 7899999987642
Q ss_pred ccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc-cceEE
Q 027933 109 SWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE-EDGLD 187 (216)
Q Consensus 109 ~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~-~~~~~ 187 (216)
.++..++|+|+|||+|+|++|++++++.+.+ +.+.. |..+++||+|+||+.++..+.-..+. .+.+.
T Consensus 73 ---~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~--------l~v~~-~~~a~~~Y~k~Gf~~~g~~~~~~~g~~~~~~~ 140 (147)
T PRK09831 73 ---HYIDMLFVDPEYTRRGVASALLKPLIKSESE--------LTVDA-SITAKPFFERYGFQTVKQQRVECRGEWFINFY 140 (147)
T ss_pred ---ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh--------eEeec-chhhHHHHHHCCCEEeeccceEECCEEEEeeE
Confidence 4567899999999999999999999998765 33333 46899999999999999865333333 66666
Q ss_pred EEec
Q 027933 188 MRKA 191 (216)
Q Consensus 188 m~k~ 191 (216)
|.|.
T Consensus 141 m~~~ 144 (147)
T PRK09831 141 MRYK 144 (147)
T ss_pred EEec
Confidence 6654
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.68 E-value=4.7e-16 Score=130.44 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=100.7
Q ss_pred eEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhc
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEY 123 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~ 123 (216)
+.||+++.+|++++.++..+.....+...+....+......+++++ +++++||++.+...... ..+++..++|+|+|
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~va~-~dg~iVG~~~~~~~~~~--~~~~I~~l~V~p~~ 371 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQGILVRRSREQLEREIDKFTVIE-RDGLIIGCAALYPFPEE--KMGEMACLAVHPDY 371 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhcccCcEEEEE-ECCEEEEEEEEEEcCCC--CeEEEEEEEECHHH
Confidence 5799999999999999865432222221222233333344566666 78999999877654332 24788999999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE------EeccccCccceEEEEecc
Q 027933 124 RRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR------VLRYYSGEEDGLDMRKAL 192 (216)
Q Consensus 124 rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~------~~~~~~~~~~~~~m~k~L 192 (216)
||+|+|++|++++++++++ .|+..+.+.. ..+++||+|+||+.++. ...+|+.+...-++.|+|
T Consensus 372 Rg~GiG~~Ll~~l~~~a~~-~g~~~l~l~~----~~a~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 372 RGSGRGERLLKRIEQRARQ-LGLKRLFVLT----TRTAHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred cCCCHHHHHHHHHHHHHHH-cCCCEEEEec----chHHHHHHHCcCEECChhhCcHHHHHhhCcccCceeeeecC
Confidence 9999999999999999999 8998876532 35899999999999876 223444445555555543
No 32
>PHA00673 acetyltransferase domain containing protein
Probab=99.68 E-value=1.3e-15 Score=108.20 Aligned_cols=126 Identities=15% Similarity=0.079 Sum_probs=96.3
Q ss_pred EEecCcCcHHHHHHhhhhhccc----cch--h---hHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCC---CccceE
Q 027933 46 IRRFCCNDLLRFTSVNLDHLTE----TFN--M---SFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQG---ESWHGH 113 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~~----~~~--~---~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~---~~~~~~ 113 (216)
+-.++.+|+++|.+|..+.-.. ... . ..+.....++...++++. ++|++||++.+...+.. ....+.
T Consensus 9 ~~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~-~~g~vVG~~~l~~~p~l~~~~~~~~~ 87 (154)
T PHA00673 9 VAFAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVF-RGEELVGFACLLVTPVPHFKGQLIGT 87 (154)
T ss_pred HhhccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEE-ECCEEEEEEEEEEecCCccCCccEEE
Confidence 3457899999999997662110 000 1 115666667777778887 68999999988765532 234578
Q ss_pred EEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 114 i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
|..++|+|++||+|||++|++++++++++ .|+..+++...++ .....||.++|++...+
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~-~Gc~~lyis~~p~-~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARD-LGATGLYVSGPTE-GRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHH-CCCCEEEEecCCC-ccchHHHHhCCchhhch
Confidence 99999999999999999999999999999 9999999874442 35789999999998654
No 33
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.68 E-value=1.5e-15 Score=109.78 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=96.2
Q ss_pred EEEecCcCcHHHHHHhhhhhcc------cc-chh----hHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceE
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLT------ET-FNM----SFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGH 113 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~------~~-~~~----~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~ 113 (216)
.+|+++++|++.+.++..+... .. ... .++...........+++. .+|++||++.+...... ...+.
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~vG~~~~~~~~~~-~~~~~ 79 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVC-QESRPIGVISFTDINLV-HKSAF 79 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEE-ECCEEEEEEEEEecChh-hCeEE
Confidence 4799999999999998644211 11 111 123333333333455555 78999999988754421 11244
Q ss_pred EEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecc
Q 027933 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRY 178 (216)
Q Consensus 114 i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~ 178 (216)
+ .+++.|.+| +|+|+++++.+++++++..++..+.+.|...|.+|++||+|+||+..+..+.+
T Consensus 80 ~-g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~ 142 (156)
T TIGR03585 80 W-GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQG 142 (156)
T ss_pred E-EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhh
Confidence 4 455999999 99999999999999997579999999999999999999999999999987754
No 34
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.67 E-value=6.6e-15 Score=117.29 Aligned_cols=133 Identities=23% Similarity=0.222 Sum_probs=98.2
Q ss_pred CCceEEEecCc-CcHHHHHHhhhhhccc-----cchhhHHHHHHhc---CCCeEEEEecc-CCcEEEEEEEEEecCCCcc
Q 027933 41 RKMTTIRRFCC-NDLLRFTSVNLDHLTE-----TFNMSFYMTYLAR---WPDYFHVAEGP-GNRIMGYIMGKVEGQGESW 110 (216)
Q Consensus 41 ~~~i~ir~~~~-~d~~~l~~l~~~~~~~-----~~~~~~~~~~~~~---~~~~~~v~~~~-~g~lvG~~~~~~~~~~~~~ 110 (216)
...+++|+++. .|...+.++....+.. .|....+...... .+..++++.++ +|++||++.+..... ...
T Consensus 147 ~~g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~-~~~ 225 (292)
T TIGR03448 147 PDGVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPD-EPA 225 (292)
T ss_pred CCCeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCC-CCc
Confidence 34689999864 5888888887666643 2333333322211 13445666633 699999976554332 122
Q ss_pred ceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 111 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..++..++|+|+|||+|+|++|++.+++++++ .|+..+.+.+...|..|++||+|+||+..++.
T Consensus 226 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~-~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 226 LGEVYVVGVDPAAQGRGLGDALTLIGLHHLAA-RGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred eeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 35677789999999999999999999999999 89999999999999999999999999987654
No 35
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.67 E-value=9.8e-16 Score=127.96 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=94.4
Q ss_pred eEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhc
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEY 123 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~ 123 (216)
+.||+++.+|++++.++........+........+......+++++ .+|++||++.+.+.... ..+++..++|+|+|
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V~~-~dg~iVG~~~~~~~~~~--~~~~I~~l~V~p~~ 359 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSIIE-HDGNIIGCAALYPYAEE--DCGEMACLAVSPEY 359 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEEEE-ECCEEEEEEEEEecCCC--CeEEEEEEEECHHH
Confidence 4799999999999999976544333333333334444444566666 78999999988765332 24788899999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 124 RRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 124 rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
||+|+|++||+++++++++ +|+..+.+ ...| +.+||+|+||+.++.
T Consensus 360 Rg~GiG~~Ll~~l~~~A~~-~G~~~l~v--~~~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 360 QDGGRGERLLAHIEDRARQ-MGISRLFV--LTTR--TGHWFRERGFQTASV 405 (429)
T ss_pred cCCCHHHHHHHHHHHHHHH-cCCCEEEE--eecc--hHHHHHHCCCEECCh
Confidence 9999999999999999999 89988754 3344 579999999999876
No 36
>PLN02825 amino-acid N-acetyltransferase
Probab=99.67 E-value=1.2e-15 Score=128.13 Aligned_cols=140 Identities=19% Similarity=0.075 Sum_probs=103.2
Q ss_pred EEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcc
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYR 124 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~r 124 (216)
.||+++.+|++.+.++...............+.+......+++++ .||++||++.+.+.... ..+++..++|+|+||
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~ei~~f~V~e-~Dg~IVG~aal~~~~~~--~~aEI~~laV~P~yR 445 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLRALDSFVVVE-REGSIIACAALFPFFEE--KCGEVAAIAVSPECR 445 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHhcCCcEEEEE-ECCEEEEEEEEEeecCC--CcEEEEEEEECHHHc
Confidence 489999999999999986643332211111122222334567776 89999999987765432 247899999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe------ccccCccceEEEEecc
Q 027933 125 RQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL------RYYSGEEDGLDMRKAL 192 (216)
Q Consensus 125 g~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~------~~~~~~~~~~~m~k~L 192 (216)
|+|+|++|++++++.+++ .|++.+.+.+. .+.+||+|+||+..+... ..|+......++.|.|
T Consensus 446 GkGiG~~LL~~le~~Ar~-~G~~~L~Lltt----~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l 514 (515)
T PLN02825 446 GQGQGDKLLDYIEKKAAS-LGLEKLFLLTT----RTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKL 514 (515)
T ss_pred CCCHHHHHHHHHHHHHHH-CCCCEEEEEeC----cHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEec
Confidence 999999999999999999 99999988662 468999999999876532 2444456666666665
No 37
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.66 E-value=6.5e-15 Score=101.28 Aligned_cols=104 Identities=23% Similarity=0.392 Sum_probs=77.2
Q ss_pred cHHHHHHhhhhhcccc-------------chhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEE
Q 027933 53 DLLRFTSVNLDHLTET-------------FNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTV 119 (216)
Q Consensus 53 d~~~l~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V 119 (216)
|++++.++..+.+... +....+...+......++++. .+|++||++.+. .. ..+..++|
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~ivG~~~~~--~~-----~~i~~l~v 72 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAE-EGGEIVGFAWLE--PD-----GEISHLYV 72 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEE-ETTEEEEEEEEE--TC-----EEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEE-ECCEEEEEEEEc--CC-----CeEEEEEE
Confidence 5667777765543321 223345666666556777777 899999999886 21 45888999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCC
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGY 169 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF 169 (216)
+|+|||+|+|++|++.+++.+++ +++.+.+. .|..+.+||+|+||
T Consensus 73 ~p~~r~~Gig~~Ll~~~~~~~~~--~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 73 LPEYRGRGIGRALLDAAEKEAKD--GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHTT--TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred ChhhcCCcHHHHHHHHHHHHHHc--CCcEEEEE---eCHHHHHHHHhCCC
Confidence 99999999999999999999954 88876665 88899999999998
No 38
>PRK10562 putative acetyltransferase; Provisional
Probab=99.65 E-value=8.1e-15 Score=104.88 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=91.6
Q ss_pred EEecCcCcHHHHHHhhhhhcc--ccchh-hHH-------HHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEE
Q 027933 46 IRRFCCNDLLRFTSVNLDHLT--ETFNM-SFY-------MTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVT 115 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~--~~~~~-~~~-------~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~ 115 (216)
||+++.+|++++.++..+... ..+.. ..+ ..... .....+++. .+|++||++.+... ..+.
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~-~~~~~iG~~~~~~~-------~~i~ 72 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYL-PAAQTWVWE-EDGKLLGFVSVLEG-------RFVG 72 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhc-CcccEEEEE-ECCEEEEEEEEeec-------cEEE
Confidence 789999999999999765421 11111 111 11111 122345555 67899999987532 3567
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc-cceEEEEec
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE-EDGLDMRKA 191 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~-~~~~~m~k~ 191 (216)
.++|+|+|||+|+|++|++.+++.+. .+.+.+...|..|++||+|+||+.++. .+++++ .+..+|...
T Consensus 73 ~~~v~~~~rg~G~g~~ll~~~~~~~~------~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~~~~~~~~~~ 141 (145)
T PRK10562 73 ALFVAPKAVRRGIGKALMQHVQQRYP------HLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQHPTWIMSWQ 141 (145)
T ss_pred EEEECHHHcCCCHHHHHHHHHHhhCC------eEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCCCEEEEEEec
Confidence 89999999999999999998877543 477888899999999999999999885 455554 677777653
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.64 E-value=8.3e-15 Score=116.72 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=98.7
Q ss_pred ecCcCcHHHHHHhhhhhccc----cchhhHHHHHHhc---CCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEC
Q 027933 48 RFCCNDLLRFTSVNLDHLTE----TFNMSFYMTYLAR---WPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVS 120 (216)
Q Consensus 48 ~~~~~d~~~l~~l~~~~~~~----~~~~~~~~~~~~~---~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~ 120 (216)
+++++|++++.++....... .+.... ...+.. .....+++. +++++||++.+...... ..++..++|+
T Consensus 5 ~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~---~~~~~~l~V~ 79 (292)
T TIGR03448 5 ALDADLRRDVRELLAAATAVDGVAPVSEQV-LRGLREPGAGHTRHLVAV-DSDPIVGYANLVPARGT---DPAMAELVVH 79 (292)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCHHH-HhhccccCCCCceEEEEE-ECCEEEEEEEEEcCCCC---cceEEEEEEC
Confidence 57788999999887654332 233333 333322 123456666 68999999987765332 2578899999
Q ss_pred hhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEeccccCCcCCC
Q 027933 121 PEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDVEKKS 200 (216)
Q Consensus 121 p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~~~~~~~~ 200 (216)
|+|||+|||++|++++++.+.. .+.+.+...|.+|++||+|+||+..... +.|.++|..-+.+.+
T Consensus 80 p~~rg~GiG~~Ll~~~~~~~~~-----~~~~~~~~~n~~a~~fy~~~Gf~~~~~~----------~~~~~~l~~~~~~~~ 144 (292)
T TIGR03448 80 PAHRRRGIGRALIRALLAKGGG-----RLRVWAHGDLPAARALASRLGLVPTREL----------LQMRRPLRDLELPEP 144 (292)
T ss_pred HhhcCCCHHHHHHHHHHHhccC-----ceEEEEcCCCHHHHHHHHHCCCEEccEE----------EEEEecCCccccCCC
Confidence 9999999999999999987653 4677888899999999999999987553 446666654222222
Q ss_pred CCCCCCCCCC
Q 027933 201 IIPLKRPVTP 210 (216)
Q Consensus 201 ~~~~~~~~~~ 210 (216)
..|.+..+++
T Consensus 145 ~~~~g~~~r~ 154 (292)
T TIGR03448 145 QVPDGVTVRA 154 (292)
T ss_pred CCCCCeEeec
Confidence 2355665554
No 40
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.63 E-value=2.3e-14 Score=103.44 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=113.4
Q ss_pred CceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhc----CCCeEEEEeccCCcEEEEEEEEEecCC--CccceEEE
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLAR----WPDYFHVAEGPGNRIMGYIMGKVEGQG--ESWHGHVT 115 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~g~lvG~~~~~~~~~~--~~~~~~i~ 115 (216)
+++.||..++.|...+.++..++|. ........+.+.. .....+|+. ++|++||.+.+....-. ......+.
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~-~~~e~~~v~~lR~~~~~~~~LslVA~-d~g~vvG~Il~s~v~~~g~~~~~~~La 79 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFG-PGREAKLVDKLREGGRPDLTLSLVAE-DDGEVVGHILFSPVTVGGEELGWLGLA 79 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhh-cchHHHHHHHHHhcCCcccceeEEEe-eCCEEEEEEEEeEEEecCcccceEEEE
Confidence 4678999999999999999998887 3343343334433 234568888 56999999998865543 32335678
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc-cceEEEEecccc
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE-EDGLDMRKALSR 194 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~-~~~~~m~k~L~~ 194 (216)
-++|+|+|||||||++|++..++.++. .|+..+.+.-.. .+|.|+||+......-+.... .+...|.+.|..
T Consensus 80 PLaV~p~~qg~GIG~~Lvr~~le~a~~-~G~~~v~vlGdp------~YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~L~~ 152 (171)
T COG3153 80 PLAVDPEYQGQGIGSALVREGLEALRL-AGASAVVVLGDP------TYYSRFGFEPAAGAKLYAPGPVPDERFLALELGD 152 (171)
T ss_pred eEEEchhhcCCcHHHHHHHHHHHHHHH-CCCCEEEEecCc------ccccccCcEEccccccccCCCCCCceEEEEEccC
Confidence 899999999999999999999999999 999987663222 689999999988765544433 778889999987
Q ss_pred CCcCC
Q 027933 195 DVEKK 199 (216)
Q Consensus 195 ~~~~~ 199 (216)
..-..
T Consensus 153 ~~l~~ 157 (171)
T COG3153 153 GALEG 157 (171)
T ss_pred CcccC
Confidence 54433
No 41
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.63 E-value=1.1e-14 Score=117.43 Aligned_cols=123 Identities=11% Similarity=0.123 Sum_probs=99.0
Q ss_pred ceEEEecCcCcHHHHHHhhhhh--cc---ccchhhHHHHHHhcCCCeEEEEe--c--cCCcEEEEEEEEEecCCCccceE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDH--LT---ETFNMSFYMTYLARWPDYFHVAE--G--PGNRIMGYIMGKVEGQGESWHGH 113 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~--~--~~g~lvG~~~~~~~~~~~~~~~~ 113 (216)
.++||+++++|++.+.++.... |. ..+....+...+... . .+++. + .++.+||++.+..... .++
T Consensus 186 ~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~-~~~~~~~d~~gd~givG~~~~~~~~~----~~~ 259 (320)
T TIGR01686 186 SLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-E-IVTVSMSDRFGDSGIIGIFVFEKKEG----NLF 259 (320)
T ss_pred EEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-C-EEEEEEEecCCCCceEEEEEEEecCC----cEE
Confidence 3789999999999999997665 43 345556677766554 3 33332 2 2678999998765432 478
Q ss_pred EEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEe--cCCHHHHHHHHhCCCeEE
Q 027933 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVR--ASNTPAIKMYEKLGYVIY 172 (216)
Q Consensus 114 i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~--~~N~~a~~~y~k~GF~~~ 172 (216)
|..++|+|++||+|+|++|++++++.+++ .|+..+.+.+. ..|.+|+.||+|+||+..
T Consensus 260 I~~l~vs~r~~grGig~~Ll~~l~~~a~~-~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 260 IDDLCMSCRALGRGVETRMLRWLFEQALD-LGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEEEcHhHhcCcHHHHHHHHHHHHHHH-cCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 99999999999999999999999999999 99999999875 479999999999999864
No 42
>PHA01807 hypothetical protein
Probab=99.63 E-value=1.3e-14 Score=103.98 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=85.6
Q ss_pred cCcCcHHHHHHhhhhhcccc-----ch--hhH---HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCc-cceEEEEE
Q 027933 49 FCCNDLLRFTSVNLDHLTET-----FN--MSF---YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGES-WHGHVTAV 117 (216)
Q Consensus 49 ~~~~d~~~l~~l~~~~~~~~-----~~--~~~---~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~-~~~~i~~~ 117 (216)
++.+|+..+..+..+.+.+. |. .+. +.....+.....+++. .+|++||++.+........ ....+..+
T Consensus 9 ~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~-~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 9 AKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVF-RDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEE-ECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 57789999988876654322 22 111 2222233344456666 6899999998765443211 11223457
Q ss_pred EEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhC
Q 027933 118 TVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKL 167 (216)
Q Consensus 118 ~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~ 167 (216)
+|+|+|||+|+|++||+.+++++++ .|+..+.+.+...|.+|++||++.
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~~~Ar~-~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELIRLAGE-GNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEecCCcHHHHHHHHhc
Confidence 9999999999999999999999999 899999999999999999999985
No 43
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.62 E-value=6.7e-15 Score=103.09 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=94.4
Q ss_pred EEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcc
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYR 124 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~r 124 (216)
.||.++.+|+..+.++......+.--.+-....+......+.+++ .+|.+||++.+.+..... .+.+..++|+|+||
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E-~~g~viGC~aL~~~~~~~--~gE~~~laV~pd~r 78 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIE-RDGKVIGCAALHPVLEED--LGELRSLAVHPDYR 78 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeee-eCCcEEEEEeecccCccC--eeeEEEEEECHHhc
Confidence 589999999999999966554332211222233333345567777 799999999988532222 58999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 125 RQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 125 g~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
|+|+|..|++.++..|++ .|++.+++.+. .+..||+++||+.+..
T Consensus 79 ~~G~G~~Ll~~~~~~Ar~-~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 79 GSGRGERLLERLLADARE-LGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred CCCcHHHHHHHHHHHHHH-cCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 999999999999999999 99999887654 3679999999998765
No 44
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.62 E-value=2.8e-14 Score=101.41 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=86.9
Q ss_pred eEEEecCcCcHHHHHHhhhhhcc-------cc-chhhHHHHHHh----cCC---CeEEEEec-cCCcEEEEEEEEEecCC
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLT-------ET-FNMSFYMTYLA----RWP---DYFHVAEG-PGNRIMGYIMGKVEGQG 107 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~-------~~-~~~~~~~~~~~----~~~---~~~~v~~~-~~g~lvG~~~~~~~~~~ 107 (216)
++||+++++|++.+.++..+.-. .. .+.....+.+. .+. ..++++.+ .++++||++.+.....
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~- 80 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK- 80 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET-
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc-
Confidence 68999999999999999753111 11 11111122221 111 22344443 3468999998844322
Q ss_pred CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCe
Q 027933 108 ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYV 170 (216)
Q Consensus 108 ~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~ 170 (216)
....+.+ .+.|.|+|||+|+|++++..++++++++.++..+.+.+..+|.+|+++++|+||+
T Consensus 81 ~~~~~ei-g~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 NNNWAEI-GYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCCcccc-ccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 2223555 5999999999999999999999999755999999999999999999999999996
No 45
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.61 E-value=8.7e-15 Score=127.13 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=92.7
Q ss_pred CceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEECh
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSP 121 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p 121 (216)
..+.||+++.+|++.+.++...........+.....+......++++. .+|++||++.+...... .+++..++|+|
T Consensus 462 ~gm~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~-~~g~IVG~~~l~~~~~~---~~~I~~i~V~P 537 (614)
T PRK12308 462 SGVKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAE-HHGEVTGCASLYIYDSG---LAEIRSLGVEA 537 (614)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEE-ECCEEEEEEEEEEcCCC---eEEEEEEEECH
Confidence 347899999999999999965432221111111222333345566666 78999999987754322 37889999999
Q ss_pred hcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 122 EYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 122 ~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
+|||+|||+.|++++++++++ .|++.+.+.+ .+..||+|+||+.++..
T Consensus 538 ~~rGkGIGk~Ll~~l~~~ak~-~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 538 GWQVQGQGSALVQYLVEKARQ-MAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred HHcCCCHHHHHHHHHHHHHHH-CCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 999999999999999999999 8999887754 24689999999988753
No 46
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=105.13 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=118.6
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCc-------cceEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGES-------WHGHVT 115 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~-------~~~~i~ 115 (216)
++.++.+++.++.++..+....++..+...++...+... +..-++. .++..||............ ...++.
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~~-~~~~~A~-~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~ 93 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSNG-DLTQLAY-YNEIAVGAVACKLIKFVQNAKRLFGNRVIYIL 93 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhcC-CHHHhhh-hccccccceeeeehhhhhhhhhhhccceeEEE
Confidence 489999999999999999999999888888766655543 3333333 3566666665554333221 137899
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCC-ceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc--cceEEEEecc
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDK-AYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE--EDGLDMRKAL 192 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g-~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~--~~~~~m~k~L 192 (216)
.+.|.++||.+|||+.|++.+.+++.+ .. ++.+++++...|..++.||++.||+.+.....||... .+...|.+.+
T Consensus 94 ~Lgvl~~yR~~gIGs~Ll~~~~~~~~~-~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l~~~~ 172 (187)
T KOG3138|consen 94 SLGVLPRYRNKGIGSKLLEFVKKYCSE-AHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFLRKLL 172 (187)
T ss_pred eecccHHHHhcchHHHHHHHHHHHHhc-ccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhhhhhe
Confidence 999999999999999999999999998 66 8899999999999999999999999999998888655 6666677766
Q ss_pred ccC
Q 027933 193 SRD 195 (216)
Q Consensus 193 ~~~ 195 (216)
...
T Consensus 173 ~~~ 175 (187)
T KOG3138|consen 173 IHG 175 (187)
T ss_pred ecC
Confidence 543
No 47
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.55 E-value=1.4e-13 Score=88.06 Aligned_cols=77 Identities=35% Similarity=0.539 Sum_probs=62.2
Q ss_pred CeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHH
Q 027933 83 DYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIK 162 (216)
Q Consensus 83 ~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~ 162 (216)
+.++++. +++++||++.+....+ ...+..++|+|+|||+|+|+.|++.+.+.+.. . .+.+.+ ++.+..
T Consensus 3 ~~~~~~~-~~~~ivG~~~~~~~~~----~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~-~---~i~l~~---~~~~~~ 70 (79)
T PF13508_consen 3 ERFFVAE-DDGEIVGFIRLWPNED----FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS-K---KIFLFT---NPAAIK 70 (79)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTT----EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC-S---EEEEEE---EHHHHH
T ss_pred cEEEEEE-ECCEEEEEEEEEEcCC----EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC-C---cEEEEE---cHHHHH
Confidence 3456666 8999999999976554 48999999999999999999999999988865 3 344544 568999
Q ss_pred HHHhCCCeE
Q 027933 163 MYEKLGYVI 171 (216)
Q Consensus 163 ~y~k~GF~~ 171 (216)
||+|+||++
T Consensus 71 fY~~~GF~~ 79 (79)
T PF13508_consen 71 FYEKLGFEE 79 (79)
T ss_dssp HHHHTTEEE
T ss_pred HHHHCcCCC
Confidence 999999984
No 48
>PRK01346 hypothetical protein; Provisional
Probab=99.53 E-value=2e-13 Score=113.84 Aligned_cols=126 Identities=21% Similarity=0.092 Sum_probs=94.4
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHh-cCCCeEEEEeccCCcEEEEEEEEEec-----CCCccceEEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLA-RWPDYFHVAEGPGNRIMGYIMGKVEG-----QGESWHGHVTA 116 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~g~lvG~~~~~~~~-----~~~~~~~~i~~ 116 (216)
.+.||+++.+|++++.++....|.............. ......+++. ++|++||++.+.... ........+..
T Consensus 6 ~~~iR~~~~~D~~~i~~L~~~~f~~~~~~~~~~~~~~~~~~~~~~va~-~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~ 84 (411)
T PRK01346 6 AITIRTATEEDWPAWFRAAATGFGDSPSDEELEAWRALVEPDRTLGAF-DGDEVVGTAGAFDLRLTVPGGAVLPAAGVTA 84 (411)
T ss_pred CceeecCCHHHHHHHHHHHHHHcCCCCChHHHHHHHHhcCcCCeEEEE-ECCEEEEEEEEeccccccCCCCccceeEEEE
Confidence 4789999999999999998888765443322222221 1233456666 789999999876432 11123578999
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
++|+|+|||+|+|++||+++++.+++ .|...+.+.+.. .+||+|+||+.....
T Consensus 85 v~V~P~~RgrGig~~Ll~~~l~~a~~-~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 85 VTVAPTHRRRGLLTALMREQLRRIRE-RGEPVAALTASE-----GGIYGRFGYGPATYS 137 (411)
T ss_pred EEEChhhcCCCHHHHHHHHHHHHHHH-CCCcEEEEECCc-----hhhHhhCCCeeccce
Confidence 99999999999999999999999999 898877776433 379999999987654
No 49
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.51 E-value=7.7e-13 Score=89.85 Aligned_cols=128 Identities=24% Similarity=0.291 Sum_probs=94.6
Q ss_pred ceEEEecCcCcHHH-HHHhhhhhcccc-chhhH----HHHHHhcCCCe-EEEEec-cCCcEEEEEEEEEecC---CCccc
Q 027933 43 MTTIRRFCCNDLLR-FTSVNLDHLTET-FNMSF----YMTYLARWPDY-FHVAEG-PGNRIMGYIMGKVEGQ---GESWH 111 (216)
Q Consensus 43 ~i~ir~~~~~d~~~-l~~l~~~~~~~~-~~~~~----~~~~~~~~~~~-~~v~~~-~~g~lvG~~~~~~~~~---~~~~~ 111 (216)
.+.+|++..+|... +.++..+.-... .+... ++........+ +.|++| ..+++||.+.+..... .....
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~r 85 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCGSR 85 (150)
T ss_pred ceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccccc
Confidence 48999999999886 777765543321 12222 33333333323 445554 3699999998775432 22335
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+++..+.|++++||+++|+.|+..+...+++ .|+-.+.|.+...| ..||+|+||...+.
T Consensus 86 GhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~-lgcYKi~LdC~~~n---v~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 86 GHIEDVVVDSEYRGKQLGKLLVETLVDLAKS-LGCYKIILDCDPKN---VKFYEKCGYSNAGN 144 (150)
T ss_pred CceeEEEeChhhhhhHHhHHHHHHHHHHHHh-cCcEEEEEecchhh---hhHHHHcCccccch
Confidence 7899999999999999999999999999999 99999999998866 68999999997653
No 50
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.49 E-value=2.9e-13 Score=97.28 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=85.8
Q ss_pred HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEE
Q 027933 74 YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFV 153 (216)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v 153 (216)
-...+......++++.+..+++|||..+...-+....+.+...+-|.++|||+|||+.||+.+...+.. ...+.|.|+|
T Consensus 83 K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~-~~~~kVmLTV 161 (202)
T KOG2488|consen 83 KAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADS-RHMRKVMLTV 161 (202)
T ss_pred HHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHH-HHhhhheeee
Confidence 444555555667777745559999999998877666678889999999999999999999999999998 8899999999
Q ss_pred ecCCHHHHHHHHhCCCeEEEE
Q 027933 154 RASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 154 ~~~N~~a~~~y~k~GF~~~~~ 174 (216)
...|.+|+.||.++||.....
T Consensus 162 f~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 162 FSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred ecccchhHHHHHHcCcccCCC
Confidence 999999999999999998654
No 51
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=97.18 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=88.0
Q ss_pred ceEEEecCcCcHHHHHHhhhhhc----cccchhhH-HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHL----TETFNMSF-YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAV 117 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~----~~~~~~~~-~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~ 117 (216)
.+.++.++..|.. +..+..... ....+... ..-.........+..+ .+|++|+.+........ ++.|..+
T Consensus 133 ~~~~r~a~~~D~~-i~~~~~~~~l~~~g~~~~~~~~~~~~~a~g~~~~~f~~-~d~~iVa~A~t~a~~~~---~~~I~gV 207 (268)
T COG3393 133 ELDVRLAAAKDMF-IPEVGLRATLDDFGRADSRKEAVAVLNALGRSRTYFLE-GDGKIVAKAETAAENPA---YAQINGV 207 (268)
T ss_pred cceeeeeeccccc-chheeeeeeecccccCcchHHHHHHHHHhhceeEEEEc-cCCcEEEeeeccccCCc---ceEEEEE
Confidence 3567777777764 222222221 12222211 2223333334445555 56799998877655443 5899999
Q ss_pred EEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 118 TVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 118 ~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
+++|+|||+|+|+.|+..+.+...+ .|...+ |.+..+|..|.+.|+|.||+..++...
T Consensus 208 ~T~peyR~kGyAt~lva~L~~~lL~-eGk~~~-L~~~~~N~~A~~iY~riGF~~~g~~~~ 265 (268)
T COG3393 208 YTHPEYRGKGYATALVATLAAKLLA-EGKIPC-LFVNSDNPVARRIYQRIGFREIGEFRE 265 (268)
T ss_pred EcCHHHccccHHHHHHHHHHHHHHh-CCCeeE-EEEecCCHHHHHHHHHhCCeecceEEE
Confidence 9999999999999999999888877 666544 778899999999999999999987543
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.41 E-value=1.1e-11 Score=80.37 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=52.7
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+.|..++|+|++||+|+|+.++..+.+.+.+ .|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~-~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLE-RGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHH-TTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHh-CCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 7788999999999999999999999999988 7776 46889999999999999999999865
No 53
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.41 E-value=1e-12 Score=90.49 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=101.4
Q ss_pred EEecCcCcHHHHHHhhhhhccccchhhHHHHHHhc--CCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhc
Q 027933 46 IRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLAR--WPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEY 123 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~ 123 (216)
+..++..++-++..+..+.|--...-++-+-.-.+ .....+.+++.+|++++++.+.+....... ..|+.+.|+|++
T Consensus 10 ~~~Lt~~ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~ 88 (155)
T COG2153 10 FNDLTVRELYELLKLRVDVFVVEQNCPYPELDGKDLLGDTRHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAA 88 (155)
T ss_pred hhhcCHHHHHHHHHhheeEEEEecCCCCcCcCCcccccccceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhh
Confidence 34456667777777777777543333331111111 234456666469999999999877655443 779999999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEeccc
Q 027933 124 RRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALS 193 (216)
Q Consensus 124 rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~ 193 (216)
||+|+|.+||..+++.+.++-.-+.+++.. ..-.+.||.+.||+.++. .|.+++-+.+-|.+...
T Consensus 89 RG~glG~~Lm~~AL~~~~~~~p~~~v~l~A---QahLq~fYa~~GFv~~~e--~yledGIpHv~M~r~~~ 153 (155)
T COG2153 89 RGQGLGQQLMEKALETAGREWPDKPVYLGA---QAHLQDFYASFGFVRVGE--EYLEDGIPHVGMIREVI 153 (155)
T ss_pred hccchhHHHHHHHHHHHHhhCCCCCeEEeh---HHHHHHHHHHhCcEEcCc--hhhcCCCCchhhhhccc
Confidence 999999999999999998843345566643 336899999999999876 67788888888877654
No 54
>PRK13688 hypothetical protein; Provisional
Probab=99.40 E-value=4.1e-12 Score=91.61 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=72.4
Q ss_pred EEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecC-------CCccceEEEEEE
Q 027933 46 IRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQ-------GESWHGHVTAVT 118 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~-------~~~~~~~i~~~~ 118 (216)
++++..+|+.++.++....+. ......++++. +++++||++.+..... .....+.+..++
T Consensus 20 ~~~~~~~dl~~l~~l~~~~f~------------~~~~~~~~~~~-~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~ 86 (156)
T PRK13688 20 FREFGNQELSMLEELQANIIE------------NDSESPFYGIY-YGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLE 86 (156)
T ss_pred HHHhcHHHHHHHHhhhhhEee------------cCCCCCEEEEE-ECCEEEEEEEEEecCCcccccccCCCCeEEEEEEE
Confidence 466666677777666555541 11123445555 6899999887643221 112347899999
Q ss_pred EChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 119 VSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 119 V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
|+|+|||+|+|++|++.+. + .++. +.+...| .+.+||+|+||+..+..
T Consensus 87 V~p~~rgkGiG~~Ll~~a~----~-~~~~---~~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 87 VLPKYQNRGYGEMLVDFAK----S-FQLP---IKTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred ECHHHcCCCHHHHHHHHHH----H-hCCe---EEEEecc-chHHHHHhCCCEEeEEe
Confidence 9999999999999998654 3 3333 3344555 57899999999998875
No 55
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.36 E-value=7.9e-12 Score=98.93 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=65.1
Q ss_pred eEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHH
Q 027933 84 YFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKM 163 (216)
Q Consensus 84 ~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~ 163 (216)
..+.+.+++|++||++.+.. ..+..++|+|+|||+|+|++|++++++.+++ .|+..+.+.+... +..|
T Consensus 6 ~~~~v~~~~~~iVG~~~l~~--------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~-~g~~~i~L~t~~~---~~~f 73 (297)
T cd02169 6 YTVGIFDDAGELIATGSIAG--------NVLKCVAVCPKYQGEGLALKIVSELINKAYE-EGIFHLFLFTKPK---NAKF 73 (297)
T ss_pred EEEEEEEECCEEEEEEEecc--------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-CCCCEEEEEEccc---HHHH
Confidence 33444336799999987742 3578999999999999999999999999999 8999998887653 4689
Q ss_pred HHhCCCeEEE
Q 027933 164 YEKLGYVIYR 173 (216)
Q Consensus 164 y~k~GF~~~~ 173 (216)
|+|+||+..+
T Consensus 74 Yek~GF~~~~ 83 (297)
T cd02169 74 FRGLGFKELA 83 (297)
T ss_pred HHHCCCEEec
Confidence 9999999887
No 56
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9e-11 Score=86.78 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCcEEEEEEEEEecC-CCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCe
Q 027933 92 GNRIMGYIMGKVEGQ-GESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYV 170 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~-~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~ 170 (216)
++++||.+.+..... ... ......+.+.|+|+|+|+|++++..++++++++.++.++.+.|...|.+|+++++|+||+
T Consensus 76 ~~~~iG~~~~~~~~~~~~~-~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~ 154 (187)
T COG1670 76 DGELIGVIGLSDIDRAANG-DLAEIGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFR 154 (187)
T ss_pred CCeEEEEEEEEEecccccc-ceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCCh
Confidence 359999998886542 111 234457777999999999999999999999998999999999999999999999999999
Q ss_pred EEEEEec
Q 027933 171 IYRRVLR 177 (216)
Q Consensus 171 ~~~~~~~ 177 (216)
..+....
T Consensus 155 ~eg~~~~ 161 (187)
T COG1670 155 LEGELRQ 161 (187)
T ss_pred hhhhhhh
Confidence 9987654
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.22 E-value=2.6e-10 Score=91.70 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=68.1
Q ss_pred CeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHH
Q 027933 83 DYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIK 162 (216)
Q Consensus 83 ~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~ 162 (216)
+.++++. ++|++||++.+.. ..+..++|+|+|||+|+|++|+.++++.+++ .|...+.+.+...| .+
T Consensus 31 d~~vv~~-~~~~lVg~g~l~g--------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~-~G~~~l~l~Tk~~~---~~ 97 (332)
T TIGR00124 31 EIFIAVY-EDEEIIGCGGIAG--------NVIKCVAIDESLRGEGLALQLMTELENLAYE-LGRFHLFIFTKPEY---AA 97 (332)
T ss_pred CEEEEEE-ECCEEEEEEEEec--------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHH-cCCCEEEEEECchH---HH
Confidence 4556665 7899999998732 2478999999999999999999999999999 89999888876544 57
Q ss_pred HHHhCCCeEEEEEe
Q 027933 163 MYEKLGYVIYRRVL 176 (216)
Q Consensus 163 ~y~k~GF~~~~~~~ 176 (216)
||+++||.......
T Consensus 98 fy~klGF~~i~~~~ 111 (332)
T TIGR00124 98 LFEYCGFKTLAEAK 111 (332)
T ss_pred HHHHcCCEEeeeec
Confidence 99999999988653
No 58
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=82.32 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=88.3
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhH--HHHHHhcCC---CeEEEEe-ccCCcEEEEEEEEEecCCCccceEEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSF--YMTYLARWP---DYFHVAE-GPGNRIMGYIMGKVEGQGESWHGHVTA 116 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~---~~~~v~~-~~~g~lvG~~~~~~~~~~~~~~~~i~~ 116 (216)
.+.+.++ .+..++.+-....++..|.... ....+.... ..+++.. ....++||...+....+.. ..+++..
T Consensus 12 ~l~~vPi--H~rPELlk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~-~al~VEs 88 (225)
T KOG3397|consen 12 DLFFVPL--HDRPELLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRD-HALWVES 88 (225)
T ss_pred cceeEec--cccHHHHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCC-ceeEEEE
Confidence 3566665 3455555554555555565443 222222211 2233333 2578899999887654432 3478999
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
+.|+.+.||+|+|+.||+.++.+++. .|++.+++.+... .+||+++||+...-+..
T Consensus 89 VVV~k~~RG~GFGk~lMk~~E~~~R~-~gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi~~ 144 (225)
T KOG3397|consen 89 VVVKKDQRGLGFGKFLMKSTEKWMRE-KGFNEAYLSTDDQ----CRFYESLGYEKCDPIVH 144 (225)
T ss_pred EEEehhhccccHHHHHHHHHHHHHHH-hhhhheeeecccc----hhhhhhhcccccCceec
Confidence 99999999999999999999999999 9999999976663 48999999998765443
No 59
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.21 E-value=3.6e-10 Score=80.43 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=94.1
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccc-----------cc---hhhHHHHHHhcCC-----------CeEEEEeccCCcEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTE-----------TF---NMSFYMTYLARWP-----------DYFHVAEGPGNRIMG 97 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~-----------~~---~~~~~~~~~~~~~-----------~~~~v~~~~~g~lvG 97 (216)
.+.++..+..+.+++.+...+.... .+ ....+.+.+.+.. ...+++.+.++++||
T Consensus 3 ~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG 82 (174)
T COG3981 3 EMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVG 82 (174)
T ss_pred cccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEE
Confidence 3567777888888888875442211 11 1111222222211 123555556899999
Q ss_pred EEEEEEecCCCc--cceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 98 YIMGKVEGQGES--WHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 98 ~~~~~~~~~~~~--~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
++.+...-+... ..++| ...|.|+.||+|+|+++++.+++.|++ .|++.|.+++..+|.+|.+.-+++|=..+.+.
T Consensus 83 ~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~-lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 83 FINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARE-LGIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred EEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHH-cCCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 998875443211 12344 788999999999999999999999999 99999999999999999999999999988765
Q ss_pred e
Q 027933 176 L 176 (216)
Q Consensus 176 ~ 176 (216)
.
T Consensus 161 ~ 161 (174)
T COG3981 161 F 161 (174)
T ss_pred c
Confidence 3
No 60
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.13 E-value=3.1e-09 Score=78.58 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=72.6
Q ss_pred HHHHHHhcCCCeEEEEeccCC--cEEEEEEEEEecCCC----------------------------------ccceEEEE
Q 027933 73 FYMTYLARWPDYFHVAEGPGN--RIMGYIMGKVEGQGE----------------------------------SWHGHVTA 116 (216)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~g--~lvG~~~~~~~~~~~----------------------------------~~~~~i~~ 116 (216)
++....+.+....+++. .++ +++|.+.+...+.-. ...+.|..
T Consensus 17 DL~~LlDaP~h~l~~l~-~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvR 95 (196)
T PF13718_consen 17 DLQLLLDAPNHRLFVLL-QPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVR 95 (196)
T ss_dssp HHHHHHH-TTEEEEEEE--SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEE
T ss_pred HHHHHhcCCcceeehhc-cCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEE
Confidence 35555556666677776 677 999999887655311 01256899
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHh-------------------------ccCCceEEEEEEecCCHHHHHHHHhCCCeE
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISD-------------------------KIDKAYFVDLFVRASNTPAIKMYEKLGYVI 171 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~-------------------------~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~ 171 (216)
++|+|++|++|+|+++++.+++++. . .+++.+-. ..-.+....+||.|+||..
T Consensus 96 IAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~vDylGt-SFG~t~~Ll~FW~k~gf~p 173 (196)
T PF13718_consen 96 IAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRP-PGVDYLGT-SFGATPELLKFWQKNGFVP 173 (196)
T ss_dssp EEE-CCC-SSSHHHHHHHHHHHT------------------------------S-SEEEE-EEE--HHHHHHHHCTT-EE
T ss_pred EEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc-cCCCEEEe-ccCCCHHHHHHHHHCCcEE
Confidence 9999999999999999999999993 4 56776644 3344668999999999999
Q ss_pred EEEEeccc-cCccceEEEEeccc
Q 027933 172 YRRVLRYY-SGEEDGLDMRKALS 193 (216)
Q Consensus 172 ~~~~~~~~-~~~~~~~~m~k~L~ 193 (216)
+......- -.++...+|.|.|+
T Consensus 174 v~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 174 VYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp EEE-SS--TTT---EEEEEEE--
T ss_pred EEEecCcccccCceeeeEEeecC
Confidence 87644321 12277888888763
No 61
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.09 E-value=1.7e-09 Score=91.68 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=63.4
Q ss_pred CCcEEEEEEEEEecCCC-----ccceEEEEEE-----------EChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEec
Q 027933 92 GNRIMGYIMGKVEGQGE-----SWHGHVTAVT-----------VSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRA 155 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~-----~~~~~i~~~~-----------V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~ 155 (216)
++.+||++.+....... ...+.|..+. ++++|||+|+|++||+++++++++ .|+..+.+.
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~-~G~~~i~v~--- 497 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAE-EGSEKILVI--- 497 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHH-CCCCEEEEe---
Confidence 57899999988654311 1134555555 359999999999999999999999 899998763
Q ss_pred CCHHHHHHHHhCCCeEEEEE
Q 027933 156 SNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 156 ~N~~a~~~y~k~GF~~~~~~ 175 (216)
.|..+++||+|+||+..+..
T Consensus 498 s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 498 SGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred eCchHHHHHHHCCCEEEcce
Confidence 36789999999999988764
No 62
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.06 E-value=5.7e-10 Score=71.30 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=68.1
Q ss_pred eccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCC
Q 027933 89 EGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLG 168 (216)
Q Consensus 89 ~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~G 168 (216)
.+.+|.+|.++..... +++...++.|+|||||+.+.++....+.+.+ +|+. ++..|..+|+.++++.+++|
T Consensus 4 lgpeG~PVSW~lmdqt-------ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~-~g~P-~Y~hv~~~N~~~~r~~~~lg 74 (89)
T PF08444_consen 4 LGPEGNPVSWSLMDQT-------GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHK-LGFP-FYGHVDEDNEASQRLSKSLG 74 (89)
T ss_pred cCCCCCEeEEEEeccc-------ccccccccCHhHhcCCHHHHHHHHHHHHHHH-CCCC-eEeehHhccHHHHHHHHHCC
Confidence 3578999999887654 6677899999999999999999999999999 8998 77999999999999999999
Q ss_pred CeEEE
Q 027933 169 YVIYR 173 (216)
Q Consensus 169 F~~~~ 173 (216)
|....
T Consensus 75 ~~~~p 79 (89)
T PF08444_consen 75 FIFMP 79 (89)
T ss_pred CeecC
Confidence 99763
No 63
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.05 E-value=1.9e-10 Score=79.93 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=99.0
Q ss_pred CceEEEecCcCcHHHHHHhhhhhccccchhhH--HHHHHhcCCCeEEEE--------eccCCcEEEEEEEEEecCC----
Q 027933 42 KMTTIRRFCCNDLLRFTSVNLDHLTETFNMSF--YMTYLARWPDYFHVA--------EGPGNRIMGYIMGKVEGQG---- 107 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~v~--------~~~~g~lvG~~~~~~~~~~---- 107 (216)
.++.||+...++..++..+....|++.....+ ....+.+-++.+... .-..+.+||++.....+..
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~lt~ 89 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERLTQ 89 (190)
T ss_pred ccccCCCCChHHHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhhhH
Confidence 35789999999999999998888865543333 333333333332111 1137899999876543321
Q ss_pred --------CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc
Q 027933 108 --------ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY 179 (216)
Q Consensus 108 --------~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~ 179 (216)
......|..++|+|+||.+|+|+.|+...++.+.++.-.+++.|-+.. +.+.||+++||+.++....-.
T Consensus 90 ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~---pLvPFYEr~gFk~vgp~~~~~ 166 (190)
T KOG4144|consen 90 ESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHD---PLVPFYERFGFKAVGPCAITV 166 (190)
T ss_pred HHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecC---CccchhHhcCceeeccccccc
Confidence 122478999999999999999999999977777763445566564444 789999999999998743322
Q ss_pred cCc----cceEEEEecc
Q 027933 180 SGE----EDGLDMRKAL 192 (216)
Q Consensus 180 ~~~----~~~~~m~k~L 192 (216)
++. ..++.|...+
T Consensus 167 ~~k~F~e~~w~dm~h~~ 183 (190)
T KOG4144|consen 167 GSKTFMELHWSDMGHPF 183 (190)
T ss_pred ccchhHHHHHHHhcCHH
Confidence 221 4445555444
No 64
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.02 E-value=2e-08 Score=78.06 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=81.1
Q ss_pred CceEEEecCcCcHHHHHHh-hhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEC
Q 027933 42 KMTTIRRFCCNDLLRFTSV-NLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVS 120 (216)
Q Consensus 42 ~~i~ir~~~~~d~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~ 120 (216)
..+.|++++++.+.....- +.+.+...|.. .+.++.. ..-+++. .+|++|+.+........ ..-..+.++
T Consensus 127 ~~y~l~~Ide~l~~~~~~e~~s~d~~~~~~s--~e~Fl~~--G~Gf~i~-~~~~iVs~~~s~~~~~~----~~EI~I~T~ 197 (265)
T PF12746_consen 127 EGYELKRIDEELYENSLEEEWSEDLVSQFSS--YEDFLKN--GFGFCIL-HDGEIVSGCSSYFVYEN----GIEIDIETH 197 (265)
T ss_dssp TTCEEEE--HHHHHHHHHSCCCGGGTTTSSS--HHHHHHH----EEEEE-ETTEEEEEEEEEEEETT----EEEEEEEE-
T ss_pred CCeEEEECCHHHHHhhhhhHhHHHHHHhcCC--HHHHHhc--CcEEEEE-ECCEEEEEEEEEEEECC----EEEEEEEEC
Confidence 3578888887666555421 12233333322 3344444 2445555 68999887765554443 344589999
Q ss_pred hhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCc
Q 027933 121 PEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGE 182 (216)
Q Consensus 121 p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~ 182 (216)
|+|||||+|+.+...++..+.+ +|.... ..+ .|.+|+++-+|+||+.......|+-++
T Consensus 198 ~~yR~kGLA~~~aa~~I~~Cl~-~~l~P~-WDc--~N~~S~~lA~kLGf~~~~~Y~~Y~v~~ 255 (265)
T PF12746_consen 198 PEYRGKGLATAVAAAFILECLE-NGLYPS-WDC--HNLASIALAEKLGFHFDFEYTAYEVNN 255 (265)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHH-TT-EEE--EE--SSHHHHHHHHHCT--EEEEEEEE----
T ss_pred HHhhcCCHHHHHHHHHHHHHHH-CCCCcC-eeC--CCHHHHHHHHHcCCcccceeeeeeecc
Confidence 9999999999999999999999 886653 434 699999999999999999988776443
No 65
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.87 E-value=2.6e-08 Score=59.74 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=50.7
Q ss_pred cCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEE
Q 027933 91 PGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDL 151 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l 151 (216)
.+++++|++.+..... ....+++..++|+|+|||+|+|++++..+++++.+ .++..+.+
T Consensus 6 ~~~~~ig~~~~~~~~~-~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~ 64 (65)
T cd04301 6 DDGEIVGFASLSPDGS-GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARE-RGAKRLRL 64 (65)
T ss_pred cCCEEEEEEEEEecCC-CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-cCCcEEEe
Confidence 6799999999887653 22358888899999999999999999999999998 88888765
No 66
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.77 E-value=1.9e-08 Score=68.15 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=91.8
Q ss_pred ceEEEecCcCcHHHHHHhhhhhc-cccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecC-C-----------Cc
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHL-TETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQ-G-----------ES 109 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~-~-----------~~ 109 (216)
++.++.....|.++++.++++.- .-.|-.......+-.. . +++. .+|.+.|++.-.-... . -.
T Consensus 7 p~~~~D~~apd~aavLaLNNeha~elswLe~erL~~l~~e--A-F~Ar-R~G~l~afl~tFd~~a~ydSpNFlWFrErYe 82 (167)
T COG3818 7 PILIRDVRAPDLAAVLALNNEHALELSWLELERLYRLYKE--A-FVAR-RDGNLAAFLVTFDSSARYDSPNFLWFRERYE 82 (167)
T ss_pred ceehhhhcCCchhhHHhccchhhhhccccCHHHHHHHHHH--H-HHHh-hccchhhheeeccccccCCCCceeehhhhCC
Confidence 46778888889999999976642 2344433322222111 1 3555 6777777664331111 0 11
Q ss_pred cceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEe--cCCHHHHHHHHhCCCeEEEEEe
Q 027933 110 WHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVR--ASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 110 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~--~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.-.++..+.|...-||+|+|+++.+.+.+++.. .|+..+.++|. ..|+++-.|...+||..++...
T Consensus 83 ~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~-agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 83 NFFYVDRVVVASRARGRGVARALYADLFSYAEL-AGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred ceEEEEEEEEEecccccchHHHHHHHHHHHHHh-cCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 236788999999999999999999999999998 99999988866 4788999999999999998754
No 67
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.8e-07 Score=62.84 Aligned_cols=132 Identities=9% Similarity=0.114 Sum_probs=89.6
Q ss_pred eEEEecCcCcHHHHHHhhhhh-c---cc--cch--hhH-HHHHHhcCCCe-EEEEecc---------CCcEEEEEEEEEe
Q 027933 44 TTIRRFCCNDLLRFTSVNLDH-L---TE--TFN--MSF-YMTYLARWPDY-FHVAEGP---------GNRIMGYIMGKVE 104 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~-~---~~--~~~--~~~-~~~~~~~~~~~-~~v~~~~---------~g~lvG~~~~~~~ 104 (216)
+.+.|.++.+.....++.... + .. +.. ..+ +......+.+. .+++.+. -+..||=+-+...
T Consensus 14 vILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt 93 (185)
T KOG4135|consen 14 VILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLT 93 (185)
T ss_pred EEEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEe
Confidence 678889999988888875332 1 11 111 111 33334444433 3333311 1336776544433
Q ss_pred cCCC-------ccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 105 GQGE-------SWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 105 ~~~~-------~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
.... ...+++.-+.-.|.-||+|+|+.++..++.++.+..++.+....+..+|.+++++|+|++|..+...
T Consensus 94 ~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 94 TSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred cCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 3221 2235666777899999999999999999999998788899999999999999999999999987653
No 68
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.65 E-value=1.2e-06 Score=76.65 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=83.0
Q ss_pred HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCC---------------------------------ccceEEEEEEEC
Q 027933 74 YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGE---------------------------------SWHGHVTAVTVS 120 (216)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~---------------------------------~~~~~i~~~~V~ 120 (216)
....++.+...++++.-.++.+|+.+.+...+... ...+.|..++|+
T Consensus 461 L~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRIAvh 540 (758)
T COG1444 461 LRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRIAVH 540 (758)
T ss_pred HHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEEEeC
Confidence 44455555666777774455888888877554320 012568899999
Q ss_pred hhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecccc-CccceEEEEecccc
Q 027933 121 PEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYS-GEEDGLDMRKALSR 194 (216)
Q Consensus 121 p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~-~~~~~~~m~k~L~~ 194 (216)
|++|++|||+++++.+++++++ ++..+.. ..-.++...+||.|+||..+......-. .+.-..+|.|.|+.
T Consensus 541 Pe~q~~GiGsrlL~~l~~~a~~--~~Dwlgv-sFG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkpLs~ 612 (758)
T COG1444 541 PELQRMGIGSRLLALLIEEARK--GLDWLGV-SFGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKPLSD 612 (758)
T ss_pred HHHHhcCHHHHHHHHHHHHHhc--CCCEEee-ccCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEecCCH
Confidence 9999999999999999999963 5555533 3445668999999999999876543322 22566677777754
No 69
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.63 E-value=1e-06 Score=55.82 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=50.7
Q ss_pred cCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhC
Q 027933 91 PGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKL 167 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~ 167 (216)
.+|+.+|++.+...+. ...+....|.|++||||+|+.|++.+++++++ .|.+- .+.-.-+.++++|.
T Consensus 6 ~~g~~~a~l~Y~~~~~----~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~-~~~kv-----~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 6 DDGEEIAELTYREDGG----VIVITHTEVPPELRGQGIAKKLVEAALDYARE-NGLKV-----VPTCSYVAKYFRRH 72 (78)
T ss_dssp SSTTEEEEEEEEESSS----EEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHH-TT-EE-----EETSHHHHHHHHH-
T ss_pred ECCEEEEEEEEEeCCC----EEEEEEEEECccccCCcHHHHHHHHHHHHHHH-CCCEE-----EEECHHHHHHHHhC
Confidence 5699999999866322 57888999999999999999999999999999 77653 23444566666653
No 70
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.57 E-value=5.4e-06 Score=56.65 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEE
Q 027933 74 YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFV 153 (216)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v 153 (216)
+.+.+ +.....+.+. -|++++|.+.+...+. .+.+..+.|++-=|++|+|..|++.+.+.+.+ +....+..
T Consensus 30 l~~~l-~~~~~l~aAr-FNdRlLgAv~v~~~~~----~~~L~~l~VRevTRrRGVG~yLlee~~rq~p~---i~~w~l~~ 100 (128)
T PF12568_consen 30 LEQWL-DEGHRLFAAR-FNDRLLGAVKVTISGQ----QAELSDLCVREVTRRRGVGLYLLEEVLRQLPD---IKHWWLAD 100 (128)
T ss_dssp -------SSEEEEEEE-ETTEEEEEEEEEEETT----EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS-S-----EEEE--
T ss_pred HHHHh-ccCCeEEEEE-echheeeeEEEEEcCc----ceEEeeEEEeeccccccHHHHHHHHHHHHCCC---CcEEEEec
Confidence 44343 3345566666 7999999999988755 48999999999999999999999999998854 55555533
Q ss_pred ec----CCHHHHHHHHhCCCeEE
Q 027933 154 RA----SNTPAIKMYEKLGYVIY 172 (216)
Q Consensus 154 ~~----~N~~a~~~y~k~GF~~~ 172 (216)
.. +-..+..|+..+||...
T Consensus 101 ~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 101 EGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp TT-S--THHHHHHHHHHHT-EE-
T ss_pred CCCcccchHHHHHHHHHcCcccc
Confidence 22 22346789999999653
No 71
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.3e-05 Score=58.44 Aligned_cols=149 Identities=17% Similarity=0.074 Sum_probs=104.3
Q ss_pred eEEEecC-cCcHHHHHHhhhhhccccchhhH---HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEE
Q 027933 44 TTIRRFC-CNDLLRFTSVNLDHLTETFNMSF---YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTV 119 (216)
Q Consensus 44 i~ir~~~-~~d~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V 119 (216)
+.+|.++ +.+++++.++...+|....-... ....+......++-+...+|++||.....+..-......+.+.++|
T Consensus 3 vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV 82 (266)
T COG3375 3 VVVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGV 82 (266)
T ss_pred eeEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhc
Confidence 4556654 56788888887776653322211 2224444556666666567799999988773323333467778999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHH-HHHHHHhCCCeEEEEEeccccCc---------cceEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTP-AIKMYEKLGYVIYRRVLRYYSGE---------EDGLDMR 189 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~-a~~~y~k~GF~~~~~~~~~~~~~---------~~~~~m~ 189 (216)
.|++++.|+|-+|-.+.-+++.+ .|+..+..+...-|.. |+--..|+|-....-+++||..- .|.++-+
T Consensus 83 ~e~~k~sglg~aLK~~Qre~a~~-~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~m~dgINrGm~sDRlVae 161 (266)
T COG3375 83 REEVKGSGLGVALKMKQRERALS-MGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGEMADGINRGMRSDRLVAE 161 (266)
T ss_pred cccccccchhhhhHHHHHHHHHh-cCeeeEEEecccchhhhhhcchhhhceeEEEeeccccchhchhhcccccccceEEE
Confidence 99999999999999999999999 9999998887777743 22234688888777777888644 3777777
Q ss_pred eccc
Q 027933 190 KALS 193 (216)
Q Consensus 190 k~L~ 193 (216)
..|.
T Consensus 162 Wwl~ 165 (266)
T COG3375 162 WWLN 165 (266)
T ss_pred EecC
Confidence 6665
No 72
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.34 E-value=2.7e-06 Score=55.96 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=52.3
Q ss_pred CCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEE
Q 027933 82 PDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFV 149 (216)
Q Consensus 82 ~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i 149 (216)
.+..+++. .+|+.+|.+.+...++.. ..+..-.|.+++||||+|++|++.+++.+++ .|.+-+
T Consensus 14 ~~~~y~~~-~~G~~~~e~~y~~~~~~~---i~i~HT~V~d~lrGqGia~~L~~~al~~ar~-~g~kii 76 (99)
T COG2388 14 ENGRYVLT-DEGEVIGEATYYDRGENL---IIIDHTYVPDELRGQGIAQKLVEKALEEARE-AGLKII 76 (99)
T ss_pred CceEEEEe-cCCcEEEEEEEecCCCCE---EEEecCcCCHHHcCCcHHHHHHHHHHHHHHH-cCCeEc
Confidence 34556666 789999999888776543 7888899999999999999999999999999 787644
No 73
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.14 E-value=4.7e-05 Score=51.06 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=62.5
Q ss_pred HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecC-CCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE
Q 027933 74 YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQ-GESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF 152 (216)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~-~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~ 152 (216)
...+...+.-..+... -+|.+|||+.+..... .......+..+.+...|||+|+|++..+++...... ...+-
T Consensus 28 l~~~w~~~~~~~~~~~-~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~g-----~w~Va 101 (143)
T COG5628 28 LETYWRDPVREAWLFR-IGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAWG-----VWQVA 101 (143)
T ss_pred hhhhhcCcccceeEEE-ECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhhc-----eEEEE
Confidence 3444444333333333 4899999997653322 222235677899999999999999999998776654 23455
Q ss_pred EecCCHHHHHHHHhCCCe
Q 027933 153 VRASNTPAIKMYEKLGYV 170 (216)
Q Consensus 153 v~~~N~~a~~~y~k~GF~ 170 (216)
+...|.+|+.||++.-..
T Consensus 102 ~i~EN~PA~~fwK~~~~t 119 (143)
T COG5628 102 TVRENTPARAFWKRVAET 119 (143)
T ss_pred EeccCChhHHHHHhhhcc
Confidence 667899999999997665
No 74
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.10 E-value=4.1e-05 Score=59.42 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHH
Q 027933 82 PDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAI 161 (216)
Q Consensus 82 ~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~ 161 (216)
-+.+.++..+++++|++..+.- ..+..++|++.+||-|++-+|+.++++.+-+ +|...+.+.+-+ ...
T Consensus 35 ve~~v~~~~~~~~iiacGsiaG--------nvikcvAvs~s~qGeGl~lkl~TeLin~ay~-~g~~hLFiyTKp---~~~ 102 (352)
T COG3053 35 VEYFVAIYRDNEEIIACGSIAG--------NVIKCVAVSESLQGEGLALKLVTELINLAYE-RGRTHLFIYTKP---EYA 102 (352)
T ss_pred ceEEEEEEcCCCcEEEeccccc--------ceeEEEEechhcccccHHHHHHHHHHHHHHH-cCCceEEEEech---hHH
Confidence 3455666657799999886642 4567899999999999999999999999999 999998887766 567
Q ss_pred HHHHhCCCeEEEEEe
Q 027933 162 KMYEKLGYVIYRRVL 176 (216)
Q Consensus 162 ~~y~k~GF~~~~~~~ 176 (216)
++|+.+||..+....
T Consensus 103 ~lFk~~GF~~i~~~~ 117 (352)
T COG3053 103 ALFKQCGFSEIASAE 117 (352)
T ss_pred HHHHhCCceEeeccC
Confidence 899999999876543
No 75
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.94 E-value=0.00066 Score=49.84 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=73.7
Q ss_pred EecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCC-e--EEEEeccCCcEEEEEEEEEecC----CCccceEEEEEEE
Q 027933 47 RRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPD-Y--FHVAEGPGNRIMGYIMGKVEGQ----GESWHGHVTAVTV 119 (216)
Q Consensus 47 r~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~~g~lvG~~~~~~~~~----~~~~~~~i~~~~V 119 (216)
.....+.++++..+.-+. .-.+....+........+ + .++.....+++|+.+.+..... .......++..++
T Consensus 8 ~NP~~e~~d~fmk~~g~~-r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~ 86 (181)
T PF06852_consen 8 INPPQEYFDQFMKLHGNE-RWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWI 86 (181)
T ss_pred eCCCHHHHHHHHHHhcCC-cccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeee
Confidence 334455577777775442 222333444444444444 3 3444446788888876543221 1233578899999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+|+|||+|+++.+-+.+.+..+. .+-..+ + ..+..+.++|.+ +||...+.
T Consensus 87 ~p~yRg~~~~kl~~~~~~~~~~~-~~~N~~-~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 87 DPEYRGKGIMKLQDDICMDELDS-VDDNSV-A---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CCcccCcchHHHHHHHHHHHhcc-CCCcee-e---ecCHHHHHHHHHHhCCCCCcc
Confidence 99999999997555555565554 333322 2 355678889987 79887765
No 76
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.90 E-value=2.1e-05 Score=52.58 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=40.6
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCC
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGY 169 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF 169 (216)
++|+|++||+|+|+.|++.+++++.. .++. .|..+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~-~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK-RGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH-cCce--------ehHHHHHHHHhcCC
Confidence 99999999999999999999999998 6655 67789999999999
No 77
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.90 E-value=7.7e-05 Score=59.46 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=65.4
Q ss_pred CeEEEEeccCCcEEEEEEEEEe----cCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCH
Q 027933 83 DYFHVAEGPGNRIMGYIMGKVE----GQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNT 158 (216)
Q Consensus 83 ~~~~v~~~~~g~lvG~~~~~~~----~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~ 158 (216)
...+++. .+.++++-+...+. +......+.|..+++.|+|||+|..++|+.+.++...+ .|+.-..|. +
T Consensus 39 ~n~~vi~-~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~-kG~p~s~L~--P--- 111 (389)
T COG4552 39 PNSYVIY-MNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIAR-KGYPVSALH--P--- 111 (389)
T ss_pred CcceEEe-ehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHH-cCCeeEEec--c---
Confidence 3445555 68888887654421 22333357889999999999999999999999999998 898876663 2
Q ss_pred HHHHHHHhCCCeEEEEE
Q 027933 159 PAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 159 ~a~~~y~k~GF~~~~~~ 175 (216)
.+.+||+|.||+.....
T Consensus 112 ~s~~iYrKfGye~asn~ 128 (389)
T COG4552 112 FSGGIYRKFGYEYASNY 128 (389)
T ss_pred CchhhHhhccccccceE
Confidence 45799999999987664
No 78
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.89 E-value=0.00024 Score=52.60 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=87.0
Q ss_pred CcCcHHHHHHhhhhhccc--cchhhH----HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCC----------------
Q 027933 50 CCNDLLRFTSVNLDHLTE--TFNMSF----YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQG---------------- 107 (216)
Q Consensus 50 ~~~d~~~l~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~---------------- 107 (216)
..++++++..+.++.|.+ .|..+. -...+++....++++. ++|+++|++.+.+...+
T Consensus 6 ~~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~-~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~ 84 (182)
T PF00765_consen 6 SRRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVAL-DDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPA 84 (182)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEE-ETTEEEEEEEEEETTS--HHHHCTGGGHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEE-ECCEEEEEeeeccCCCcchhhhHHHHHhCCCCC
Confidence 345678888888888875 354332 1122333334455556 56999999998875431
Q ss_pred --CccceEEEEEEEChhccc------CCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc
Q 027933 108 --ESWHGHVTAVTVSPEYRR------QQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY 179 (216)
Q Consensus 108 --~~~~~~i~~~~V~p~~rg------~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~ 179 (216)
....+++..++|+++.++ .-+...|+..+.+++.+ .|++.+...+.. ...+++++.||.....-....
T Consensus 85 p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~-~gi~~~v~V~~~---~~~r~l~r~G~~~~~lG~~~~ 160 (182)
T PF00765_consen 85 PRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALS-NGIRHIVGVVDP---AMERILRRAGWPVRRLGPPRS 160 (182)
T ss_dssp -SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHC-TT-SEEEEEEEH---HHHHHHHHCT-EEEESSEEEE
T ss_pred CCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHH-CCCCEEEEEECh---HHHHHHHHcCCceEECCCCee
Confidence 123578999999998532 24677899999999999 999998775554 889999999998765433222
Q ss_pred cCccceEEEEec
Q 027933 180 SGEEDGLDMRKA 191 (216)
Q Consensus 180 ~~~~~~~~m~k~ 191 (216)
.++...+.....
T Consensus 161 ~~~~~~~a~~i~ 172 (182)
T PF00765_consen 161 IGGERVVALLIP 172 (182)
T ss_dssp ETTEEEEEEEEE
T ss_pred eCCeEEEEEEEE
Confidence 233444444333
No 79
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00013 Score=61.62 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=100.1
Q ss_pred eEEEecCcCcHHHHHHhhhhhcccc-chhhH-----------HHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccc
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLTET-FNMSF-----------YMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWH 111 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~ 111 (216)
+.|||.+..|-+.+..++...+.+. ...++ .-..+......|.++.++++++||++....+.....+.
T Consensus 680 y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F~rn 759 (891)
T KOG3698|consen 680 YDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLFSRN 759 (891)
T ss_pred EeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchhhhc
Confidence 7899999999999999987766321 11111 23334445567899998899999999876543211100
Q ss_pred ---------------------------------------------------------eEEEEEEEChhcccCCHHHHHHH
Q 027933 112 ---------------------------------------------------------GHVTAVTVSPEYRRQQLAKKLMN 134 (216)
Q Consensus 112 ---------------------------------------------------------~~i~~~~V~p~~rg~GiG~~ll~ 134 (216)
......++..+.-.-|+.+.+++
T Consensus 760 ~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m~~ 839 (891)
T KOG3698|consen 760 FLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWVETYFGMDASDAHPMKKMIQ 839 (891)
T ss_pred eeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHHhhccccccccchHHHHHHH
Confidence 00112344555556789999999
Q ss_pred HHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEec
Q 027933 135 LLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKA 191 (216)
Q Consensus 135 ~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~ 191 (216)
-++..++. .|.+...+.|..++.+-++||.++||..++.... .++++|.+.
T Consensus 840 vll~tL~a-NGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~-----~~~~i~Gr~ 890 (891)
T KOG3698|consen 840 VLLVTLAA-NGSRGAFLTVAIDDIERQKFYSELGLTDLGLSEC-----QRFRIFGRT 890 (891)
T ss_pred HHHHHHHh-cCCcceeEEechhHHHHHHHHHHhchHHHhHhhc-----ceEEEeccc
Confidence 99999988 9999999999999999999999999998765322 455555544
No 80
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.65 E-value=0.0004 Score=55.95 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=54.4
Q ss_pred ceEEEecCcCcHHHHHHhhhhhcc---c-cchhhH-----------HHHHHh---cCCCeEEEEec-cCCcEEEEEEEEE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLT---E-TFNMSF-----------YMTYLA---RWPDYFHVAEG-PGNRIMGYIMGKV 103 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~---~-~~~~~~-----------~~~~~~---~~~~~~~v~~~-~~g~lvG~~~~~~ 103 (216)
|+.|||++.+|++++.++....-. . +.+... |..... ....+.+|.+| ++|++||++.+..
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a 80 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEA 80 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEES
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEe
Confidence 678999999999999999665422 1 111111 222121 12235778886 3799999998764
Q ss_pred ecCC---------------------------------CccceEEEEEEEChhcccCCHHHHHHHH
Q 027933 104 EGQG---------------------------------ESWHGHVTAVTVSPEYRRQQLAKKLMNL 135 (216)
Q Consensus 104 ~~~~---------------------------------~~~~~~i~~~~V~p~~rg~GiG~~ll~~ 135 (216)
.-.. .....++..+.++|+||+-|.|+.|-+.
T Consensus 81 ~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~ 145 (342)
T PF04958_consen 81 AVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRS 145 (342)
T ss_dssp STTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHH
T ss_pred ccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHH
Confidence 2211 0112568899999999999999988664
No 81
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.65 E-value=0.0013 Score=49.69 Aligned_cols=120 Identities=8% Similarity=-0.018 Sum_probs=81.6
Q ss_pred CcCcHHHHHHhhhhhcccc--chhhH---HH-HHHhcCCCeEEEEeccCCcEEEEEEEEEecCC----------------
Q 027933 50 CCNDLLRFTSVNLDHLTET--FNMSF---YM-TYLARWPDYFHVAEGPGNRIMGYIMGKVEGQG---------------- 107 (216)
Q Consensus 50 ~~~d~~~l~~l~~~~~~~~--~~~~~---~~-~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~---------------- 107 (216)
..++++++..+.++.|.+. |..+. .+ ..++.....+++..+++|+++|++.+.+...+
T Consensus 14 ~~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~ 93 (207)
T PRK13834 14 EASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRL 93 (207)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCC
Confidence 3466788888888887753 33221 11 12233344556666578999999987654221
Q ss_pred --CccceEEEEEEEChhcccC---C----HHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 108 --ESWHGHVTAVTVSPEYRRQ---Q----LAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 108 --~~~~~~i~~~~V~p~~rg~---G----iG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
....+++..++|+++++.. + +...|+..+.+++.. .|++.+...+.. ...+++.++||....
T Consensus 94 ~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~-~Gi~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 94 NAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMA-NGYTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHH-CCCCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 1235789999999986322 2 556789999999999 999988665444 678899999998754
No 82
>PRK10456 arginine succinyltransferase; Provisional
Probab=97.61 E-value=0.00041 Score=55.73 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=60.1
Q ss_pred ceEEEecCcCcHHHHHHhhhhhcc---c-cchhhH-----------HHHHHh-cCCCeEEEEec-cCCcEEEEEEEEEec
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLT---E-TFNMSF-----------YMTYLA-RWPDYFHVAEG-PGNRIMGYIMGKVEG 105 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~---~-~~~~~~-----------~~~~~~-~~~~~~~v~~~-~~g~lvG~~~~~~~~ 105 (216)
|+.|||++.+|++++.++....-. . +.+... |..... ....+.+|.+| +.|++||++.+...-
T Consensus 1 M~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 80 (344)
T PRK10456 1 MMVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAV 80 (344)
T ss_pred CeEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEecc
Confidence 578999999999999999655321 1 111111 211111 12345677775 469999999766421
Q ss_pred C-CC--------------------------------ccceEEEEEEEChhcccCCHHHHHHHH
Q 027933 106 Q-GE--------------------------------SWHGHVTAVTVSPEYRRQQLAKKLMNL 135 (216)
Q Consensus 106 ~-~~--------------------------------~~~~~i~~~~V~p~~rg~GiG~~ll~~ 135 (216)
. .. ....++..+.++|+||+-|.|+.|-+.
T Consensus 81 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 81 GLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 1 10 112468899999999999999887654
No 83
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.60 E-value=0.0024 Score=44.70 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=71.8
Q ss_pred eEEEec-CcCcHHHHHHhhhhhccc-------cchhhHHHHHHhcC---CCe-EEEEeccCCcEEEEEEEEEecCCCccc
Q 027933 44 TTIRRF-CCNDLLRFTSVNLDHLTE-------TFNMSFYMTYLARW---PDY-FHVAEGPGNRIMGYIMGKVEGQGESWH 111 (216)
Q Consensus 44 i~ir~~-~~~d~~~l~~l~~~~~~~-------~~~~~~~~~~~~~~---~~~-~~v~~~~~g~lvG~~~~~~~~~~~~~~ 111 (216)
++++.. ..+|++++.++..+.+.. .....++...+... ... .+++. .+|++||+........ .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~g~~va~~~~~~~~~----~ 94 (142)
T PF13480_consen 20 VRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLY-DGGEPVAFALGFRHGG----T 94 (142)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEE-ECCEEEEEEEEEEECC----E
Confidence 455443 567788888876544332 23333455454432 233 34444 7899999997776554 3
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF 152 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~ 152 (216)
.+.....++|+++..+.|..|+..+++++.+ .|++.+-+.
T Consensus 95 ~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~-~g~~~~d~g 134 (142)
T PF13480_consen 95 LYYWYGGYDPEYRKYSPGRLLLWEAIRWAIE-RGLRYFDFG 134 (142)
T ss_pred EEEEEEEECHhhHhCCHHHHHHHHHHHHHHH-CCCCEEEEC
Confidence 6677788899999999999999999999999 898887664
No 84
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.48 E-value=0.0029 Score=49.06 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=82.5
Q ss_pred eEEEecCc-CcHHHHHHhhhhhcccc--chhhH-----HH-HHHhcCCCeEEEEeccCCcEEEEEEEEEecC--------
Q 027933 44 TTIRRFCC-NDLLRFTSVNLDHLTET--FNMSF-----YM-TYLARWPDYFHVAEGPGNRIMGYIMGKVEGQ-------- 106 (216)
Q Consensus 44 i~ir~~~~-~d~~~l~~l~~~~~~~~--~~~~~-----~~-~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~-------- 106 (216)
+.++.+.. +++.++..+..+.|.+. |.... .+ ..++....++++...++|++||++.+.+...
T Consensus 8 ~~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p 87 (241)
T TIGR03694 8 FEIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFP 87 (241)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEecccccccccccc
Confidence 45666544 45788888988887643 32110 11 1122222333333324699999998775310
Q ss_pred -------------------CCccceEEEEEEEChhcccC--------C--------------------HHHHHHHHHHHH
Q 027933 107 -------------------GESWHGHVTAVTVSPEYRRQ--------Q--------------------LAKKLMNLLEDI 139 (216)
Q Consensus 107 -------------------~~~~~~~i~~~~V~p~~rg~--------G--------------------iG~~ll~~~~~~ 139 (216)
.....+++..++|++++|++ | +...|+..+.++
T Consensus 88 ~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 167 (241)
T TIGR03694 88 FEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIAL 167 (241)
T ss_pred HHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHH
Confidence 01235788999999999974 2 456789999999
Q ss_pred HhccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 140 SDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 140 a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
+.. .|++.++..+.. ...+++.++|+....
T Consensus 168 a~~-~Gi~~~~~v~~~---~l~r~l~r~G~~~~~ 197 (241)
T TIGR03694 168 SSA-NGITHWYAIMEP---RLARLLSRFGIQFRQ 197 (241)
T ss_pred HHH-CCCcEEEEEeCH---HHHHHHHHhCCceEE
Confidence 999 999988665544 688899999987643
No 85
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.35 E-value=0.00026 Score=58.47 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=43.7
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
...||++|+|++||+.++..|++ .+..+|.+.... .++.+|+|+||+..+-.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~e-e~~~ki~viSgi---G~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIARE-EGAKKILVISGI---GVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHh-hccccEEEEecc---cHHHHHHHhCccccCCc
Confidence 57899999999999999999999 678877654333 78999999999987643
No 86
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.25 E-value=0.011 Score=43.97 Aligned_cols=143 Identities=11% Similarity=0.087 Sum_probs=93.0
Q ss_pred ecCcCcHHHHHHhhhhhcccc--chhh----HHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCC--------------
Q 027933 48 RFCCNDLLRFTSVNLDHLTET--FNMS----FYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQG-------------- 107 (216)
Q Consensus 48 ~~~~~d~~~l~~l~~~~~~~~--~~~~----~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~-------------- 107 (216)
...++-++++..+.++.|.+. |... +-...+++....++++.+.+|+++|++.+.+...+
T Consensus 11 ~~~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~ 90 (209)
T COG3916 11 ELFPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGG 90 (209)
T ss_pred hhcHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCC
Confidence 344556778888888877653 3211 11223344445566665689999999987764321
Q ss_pred ----CccceEEEEEEECh--hcccC---CH-HHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEec
Q 027933 108 ----ESWHGHVTAVTVSP--EYRRQ---QL-AKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLR 177 (216)
Q Consensus 108 ----~~~~~~i~~~~V~p--~~rg~---Gi-G~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~ 177 (216)
....++...++|++ .-++. .. +..|+.-+++++.. +|++.|...+.. .+.+.++++||.....-..
T Consensus 91 ~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~-~G~~~IvtVt~~---~meril~r~Gw~~~riG~~ 166 (209)
T COG3916 91 PPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALA-RGITGIVTVTDT---GMERILRRAGWPLTRIGPP 166 (209)
T ss_pred CCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHH-cCCceEEEEEch---HHHHHHHHcCCCeEEcCCc
Confidence 12346788888886 33332 33 66788889999999 999998765555 8899999999988755333
Q ss_pred cccCccceEEEEecccc
Q 027933 178 YYSGEEDGLDMRKALSR 194 (216)
Q Consensus 178 ~~~~~~~~~~m~k~L~~ 194 (216)
-.-++...+....++..
T Consensus 167 ~~ig~~~~VA~~l~i~~ 183 (209)
T COG3916 167 LTIGNERAVALLLDIDR 183 (209)
T ss_pred eeeCCeeEEEEEeecCH
Confidence 33333666666666544
No 87
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.24 E-value=0.002 Score=53.80 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=94.6
Q ss_pred ceEEEecCcCcHHHHHHhhhhh--c---cccchhhHHHHHHhcCCCeEEEEe----ccCCcEEEEEEEEEecCCCccceE
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDH--L---TETFNMSFYMTYLARWPDYFHVAE----GPGNRIMGYIMGKVEGQGESWHGH 113 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~--~---~~~~~~~~~~~~~~~~~~~~~v~~----~~~g~lvG~~~~~~~~~~~~~~~~ 113 (216)
.+++++....++..+.++.+.. | ...++.....+...+....++-+. +.|+-+||++.+..... .+.
T Consensus 413 ~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk~~----~w~ 488 (574)
T COG3882 413 RLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKKES----EWF 488 (574)
T ss_pred EEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEecCC----eEE
Confidence 3678888889999999986442 2 244566666664444433333332 13788999988876543 377
Q ss_pred EEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE--EecCCHHHHHHHHhCCCeEEEE
Q 027933 114 VTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF--VRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 114 i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~--v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
|..+...-..-|+++-++||..+++.|.. .|+..+... ....|.+...||+++||+..++
T Consensus 489 IDt~lmSCRVlgRkvE~~l~~~~~e~A~~-~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 489 IDTFLMSCRVLGRKVEQRLMNSLEEQALS-EGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 77888889999999999999999999999 899888775 4457888999999999996554
No 88
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.06 E-value=0.0026 Score=50.06 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEeccccC
Q 027933 127 QLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRD 195 (216)
Q Consensus 127 GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~~~ 195 (216)
|-...++..+.+.|.+ .|+.+|.+.|.. ....+|++.||..++.++.||.+ .+.+.|.+.|...
T Consensus 21 ~~~~~~~~~~~~~a~~-~~~~ki~~~~~~---~~~~~~~~~g~~~e~~i~~~f~g-~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKK-EGYTKIIAKVPG---SDKPLFEERGYLEEAKIPGYFNG-HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHH-cCCcEEEEEccH---HHHHHHHHCCCeEEEecccccCC-CceEEEEEcCchH
Confidence 3467899999999999 999999998887 45789999999999999999987 7899999999764
No 89
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.03 E-value=0.028 Score=40.20 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=64.4
Q ss_pred ceEEEecCcCc---HHHHHHhhhhhccc--------cchhhHHHHHHhcCCCe---EEEEe--ccCCcEEEEEEEEEecC
Q 027933 43 MTTIRRFCCND---LLRFTSVNLDHLTE--------TFNMSFYMTYLARWPDY---FHVAE--GPGNRIMGYIMGKVEGQ 106 (216)
Q Consensus 43 ~i~ir~~~~~d---~~~l~~l~~~~~~~--------~~~~~~~~~~~~~~~~~---~~v~~--~~~g~lvG~~~~~~~~~ 106 (216)
.+....++.+| +.++.++..+.+-+ .|..+++.-.+. .+.+ +.++. ..++++|||+...+..-
T Consensus 23 gF~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~-pPg~~~~whiGVR~~~~~kLvgfIsaip~~i 101 (162)
T PF01233_consen 23 GFEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALK-PPGWKKEWHIGVRVKSSKKLVGFISAIPATI 101 (162)
T ss_dssp TEEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHT-STT--GGGEEEEEETTTTEEEEEEEEEEEEE
T ss_pred CCEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheee-CcCCccceEEEEEECCCCEEEEEEccceEEE
Confidence 35666665544 56666666555532 233444443444 3332 23332 35899999998775432
Q ss_pred ----CCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEE
Q 027933 107 ----GESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFV 149 (216)
Q Consensus 107 ----~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i 149 (216)
.....+++..++|++.+|.++++-.|++++...+.. .|+-..
T Consensus 102 rv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~-~gI~qA 147 (162)
T PF01233_consen 102 RVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNL-QGIWQA 147 (162)
T ss_dssp EETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHT-TT--EE
T ss_pred EEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhh-cCceee
Confidence 223357899999999999999999999999999988 675443
No 90
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.01 E-value=0.0041 Score=49.95 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=57.8
Q ss_pred EEecCcCcHHHHHHhhhhhcc---c-cchhh-----------HHHHHHh--cCCCeEEEEec-cCCcEEEEEEEEEecC-
Q 027933 46 IRRFCCNDLLRFTSVNLDHLT---E-TFNMS-----------FYMTYLA--RWPDYFHVAEG-PGNRIMGYIMGKVEGQ- 106 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~---~-~~~~~-----------~~~~~~~--~~~~~~~v~~~-~~g~lvG~~~~~~~~~- 106 (216)
|||++.+|++++.++..+.-. . +.+.. .|.+... ....+.+|.+| +.|++||++.+...-.
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 799999999999999655321 1 11111 1322111 22345677775 4699999997664211
Q ss_pred CC--------------------------------ccceEEEEEEEChhcccCCHHHHHHHH
Q 027933 107 GE--------------------------------SWHGHVTAVTVSPEYRRQQLAKKLMNL 135 (216)
Q Consensus 107 ~~--------------------------------~~~~~i~~~~V~p~~rg~GiG~~ll~~ 135 (216)
.. ....++..++++|+||+-|.|+.|-+.
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 10 112568899999999999999887654
No 91
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.99 E-value=0.0038 Score=50.20 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=57.4
Q ss_pred EEecCcCcHHHHHHhhhhhcc---c-cchhhH-----------HHHHHh-cCCCeEEEEec-cCCcEEEEEEEEEecC-C
Q 027933 46 IRRFCCNDLLRFTSVNLDHLT---E-TFNMSF-----------YMTYLA-RWPDYFHVAEG-PGNRIMGYIMGKVEGQ-G 107 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~---~-~~~~~~-----------~~~~~~-~~~~~~~v~~~-~~g~lvG~~~~~~~~~-~ 107 (216)
|||++.+|++++.++..+.-. . +.+... |..... ....+.+|.+| +.|++||++.+...-. .
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 799999999999999655321 1 111111 211111 12345677775 4699999997664211 1
Q ss_pred C--------------------------------ccceEEEEEEEChhcccCCHHHHHHHH
Q 027933 108 E--------------------------------SWHGHVTAVTVSPEYRRQQLAKKLMNL 135 (216)
Q Consensus 108 ~--------------------------------~~~~~i~~~~V~p~~rg~GiG~~ll~~ 135 (216)
. ....++..+.++|+||+-|.|+.|-+.
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHH
Confidence 0 112568899999999999999887653
No 92
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.99 E-value=0.0026 Score=39.03 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.8
Q ss_pred ceEEEEEEEChhcccCCHHHHHHHHHHHHHh
Q 027933 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDISD 141 (216)
Q Consensus 111 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~ 141 (216)
.+-|..++|+|.+|++|||++||+.+.+...
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~i 35 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENFI 35 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhcc
Confidence 3667899999999999999999999876644
No 93
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.92 E-value=0.0055 Score=49.22 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred EEecCcCcHHHHHHhhhhhcc---c-cchhh-----------HHHHHHh-cCCCeEEEEec-cCCcEEEEEEEEEecC-C
Q 027933 46 IRRFCCNDLLRFTSVNLDHLT---E-TFNMS-----------FYMTYLA-RWPDYFHVAEG-PGNRIMGYIMGKVEGQ-G 107 (216)
Q Consensus 46 ir~~~~~d~~~l~~l~~~~~~---~-~~~~~-----------~~~~~~~-~~~~~~~v~~~-~~g~lvG~~~~~~~~~-~ 107 (216)
|||++.+|++++.++..+.-. . +.+.. .|..... ....+.+|.+| +.|++||++.+...-. .
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 799999999999999655321 1 11111 1321111 12345677775 4699999997664211 0
Q ss_pred C--------------------------------ccceEEEEEEEChhcccCCHHHHHHHH
Q 027933 108 E--------------------------------SWHGHVTAVTVSPEYRRQQLAKKLMNL 135 (216)
Q Consensus 108 ~--------------------------------~~~~~i~~~~V~p~~rg~GiG~~ll~~ 135 (216)
. ....++..+.++|+||+-|.|+.|-+.
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 0 112568899999999999999988664
No 94
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.87 E-value=0.001 Score=53.15 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=42.3
Q ss_pred hhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 121 PEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 121 p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
..||.||+|+.||+.++..|+++.|-.++.+.... ..+.+|.|+||+..+-
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGV---GtR~YY~klGY~LdGP 547 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGV---GTRNYYRKLGYELDGP 547 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEecc---chHHHHHhhCeeecCh
Confidence 46999999999999999999987887776654333 5678999999998764
No 95
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.81 E-value=0.014 Score=38.64 Aligned_cols=61 Identities=13% Similarity=-0.022 Sum_probs=46.2
Q ss_pred cCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCH
Q 027933 91 PGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNT 158 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~ 158 (216)
.++...|++.+..... .....++..++|.+..||+|+|..+.+.+.+... .+...+..+|+
T Consensus 15 ~~e~y~~~aIvt~~~~-~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~~------~L~Wrsr~~n~ 75 (99)
T cd04264 15 LSEGYNAAAIVTYEGV-NNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDFP------KLFWRSRKTNP 75 (99)
T ss_pred EeCCceEEEEEeccCC-CCCceEEEEEEEchhhhhcChHHHHHHHHHhhCC------ceEEEeCCCCc
Confidence 3566788887765432 2235899999999999999999999998876533 47777777774
No 96
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.76 E-value=0.046 Score=44.42 Aligned_cols=128 Identities=12% Similarity=0.026 Sum_probs=85.7
Q ss_pred eEEEecCcCcHHHHHHhhhhhcc----ccchhhHHHHHHhcCCC--eEEEEeccCCcEEEEEEEEEecCCCccceEEEEE
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHLT----ETFNMSFYMTYLARWPD--YFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAV 117 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~ 117 (216)
++++. .+|++++.++..+.+. ...+..++........+ .++++.+.+|++||.+.+..... .......
T Consensus 152 v~v~~--~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~g~~va~~l~~~~~~----~~~~~~~ 225 (330)
T TIGR03019 152 LTVTV--DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGDGVVASAVLSFYFRD----EVLPYYA 225 (330)
T ss_pred eEEEE--CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCCCCEEEEEEEEEeCC----EEEEEec
Confidence 55654 3568888887654332 22445556655543332 23444435889998876655433 1333355
Q ss_pred EEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEecc
Q 027933 118 TVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRY 178 (216)
Q Consensus 118 ~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~ 178 (216)
+.++++++.+-+..|.-.+++++.+ .|++.+.+.....+....+|=++.||+.+...-.|
T Consensus 226 g~~~~~~~~~~~~lL~w~~i~~a~~-~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~ 285 (330)
T TIGR03019 226 GGLREARDVAANDLMYWELMRRACE-RGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEY 285 (330)
T ss_pred cChHHHHhhChHHHHHHHHHHHHHH-CCCcEEEcCCCCCCCccHHHHhcCCCeeccceEEE
Confidence 6789999999999999999999999 99999888755555566677778999987665433
No 97
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.51 E-value=0.083 Score=38.63 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=73.0
Q ss_pred cCcC-cHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEec-CCCccceEEEEEEEChhcccC
Q 027933 49 FCCN-DLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEG-QGESWHGHVTAVTVSPEYRRQ 126 (216)
Q Consensus 49 ~~~~-d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~-~~~~~~~~i~~~~V~p~~rg~ 126 (216)
+..- |.+.+.++..+.+........+...+......+++ ++..-|.+.+.+.. ......+++..++|.+..||.
T Consensus 28 ~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~----d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~ 103 (170)
T PF04768_consen 28 LSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV----DEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGS 103 (170)
T ss_dssp CCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE----ETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHT
T ss_pred ccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE----eCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhc
Confidence 3344 89999999888885555555566666655445444 34455555665532 233346899999999999999
Q ss_pred CHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHH-h-CCCeE
Q 027933 127 QLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYE-K-LGYVI 171 (216)
Q Consensus 127 GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~-k-~GF~~ 171 (216)
|++..+.+.+.+.... +...+..+| +..++|- | -|+..
T Consensus 104 gv~D~vf~~i~~d~p~------L~Wrsr~~n-~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 104 GVADNVFNAIRKDFPK------LFWRSREDN-PNNKWYFERSDGSFK 143 (170)
T ss_dssp THHHHHHHHHHHH-SS------EEEEEETT--TTHHHHHHH-SEEEE
T ss_pred CHHHHHHHHHHHhccc------eEEEecCCC-CcccEEEEeeEEEEE
Confidence 9999999998665544 767788877 4666663 3 56655
No 98
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.36 E-value=0.034 Score=36.77 Aligned_cols=59 Identities=12% Similarity=-0.057 Sum_probs=42.5
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCH
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNT 158 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~ 158 (216)
++..=|++.+.+... ....++..++|.++.||+|+|..+++.+.+... .+...+..+|+
T Consensus 17 ~e~y~~~aivt~~~~--~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~~------~L~Wrsr~~n~ 75 (99)
T cd04265 17 SEGYNAAAIVTNEEV--DGVPYLDKFAVSSSAQGEGTGEALWRRLRRDFP------KLFWRSRSTNP 75 (99)
T ss_pred eCCCcEEEEEeccCC--CCceEEEEEEEchhhhhcChHHHHHHHHHhhCC------ceEEEeCCCCc
Confidence 444555555554331 235899999999999999999999998875543 37677777774
No 99
>PHA00432 internal virion protein A
Probab=96.35 E-value=0.011 Score=41.24 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=59.2
Q ss_pred EEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEECh--h
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSP--E 122 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p--~ 122 (216)
.|+++|.+|+..+ .+..+...+..... .... ...+..++.+. .+|++++.+. +....++.+..-.|.. .
T Consensus 2 ~I~paT~~di~~~-~lr~~D~~E~~a~g-~~~~-~~~s~~~~~~~-~~G~~~aI~G-----n~G~~vW~v~T~~v~~~~~ 72 (137)
T PHA00432 2 YIRQTTERDFDVF-NPSFEDILEAKAYG-IEPS-FPPDSECVTLS-LDGFVLAIGG-----NQGDQVWFVTSDQVWRLTK 72 (137)
T ss_pred ccccccHHHHHHc-CCCHHHHHHHHhcC-CCCC-CCCCceEEEEe-cCCeEEEEec-----CCCCceEEEecHHhhhCCh
Confidence 5677888887776 43222111110000 0000 11234455555 7999988772 2111112222222221 0
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
-..+..-+.+.. ..+.+.+ .++.+.=.|...|..+++|.+.+||+....
T Consensus 73 ~~~reF~k~~~~-~ld~ml~--~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 73 KEKREFRKLIME-YRDMMLD--QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhHHHHHHHHH-HHHHHHH--hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 011122222223 2333333 366666679999999999999999999876
No 100
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=96.29 E-value=0.024 Score=40.92 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=92.2
Q ss_pred cCcCcHHHHHHhhhhhcccc--chhhHH---HHHHhcCCCeEEEEeccCCcEEEEEE----EEEecCCCccceEEEEEEE
Q 027933 49 FCCNDLLRFTSVNLDHLTET--FNMSFY---MTYLARWPDYFHVAEGPGNRIMGYIM----GKVEGQGESWHGHVTAVTV 119 (216)
Q Consensus 49 ~~~~d~~~l~~l~~~~~~~~--~~~~~~---~~~~~~~~~~~~v~~~~~g~lvG~~~----~~~~~~~~~~~~~i~~~~V 119 (216)
++..|-.++.+++...+... ++...| .......++.-.++. +..-+++.+. +...+......++++..+|
T Consensus 15 L~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgy-D~~GvaAH~G~LRRFIkVG~vDlLVaElGLygV 93 (196)
T PF02474_consen 15 LQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGY-DSRGVAAHMGLLRRFIKVGEVDLLVAELGLYGV 93 (196)
T ss_pred cchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEee-cCchHHHHHHHHHHHhccCCcceeEEEEEEEEe
Confidence 45677888888877776542 222222 122233445556666 3333443332 1122233334588999999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCC---Ce-------EEEEEeccccCc-----cc
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLG---YV-------IYRRVLRYYSGE-----ED 184 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~G---F~-------~~~~~~~~~~~~-----~~ 184 (216)
.|+.+|.||+..+ ..+.-.+++ .++...+.+|.. +..+.+++++ .. +-.+..+.+.+- +|
T Consensus 94 RpDLEGlGi~hs~-r~m~PvLq~-LgVPF~FGtVR~---al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed 168 (196)
T PF02474_consen 94 RPDLEGLGISHSM-RVMYPVLQE-LGVPFGFGTVRH---ALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIED 168 (196)
T ss_pred eccccccccchhh-hhhhhHHHh-cCCCeecccchH---HHHHHHHHHhccchhhcccCceeeccCccccCCCCCccccc
Confidence 9999999999876 577788888 899988887776 6777777764 31 112222333222 56
Q ss_pred eEEEEeccccCCcCCCCCCCCCCCCC
Q 027933 185 GLDMRKALSRDVEKKSIIPLKRPVTP 210 (216)
Q Consensus 185 ~~~m~k~L~~~~~~~~~~~~~~~~~~ 210 (216)
.+.++..+...-.++| .|..|..
T Consensus 169 ~lv~V~Pi~r~~seWP---~Gt~IdR 191 (196)
T PF02474_consen 169 VLVVVLPIGRSMSEWP---AGTLIDR 191 (196)
T ss_pred ceEEEEcCCCccccCC---CCccccC
Confidence 7777777776666655 4554443
No 101
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=96.21 E-value=0.11 Score=38.42 Aligned_cols=135 Identities=17% Similarity=0.117 Sum_probs=80.8
Q ss_pred cccCCCCceEEEecCcCcHHHHHHhhhhhcc-----ccchhhHHHHHHhcCC--CeEEEEeccCCcEEEEEEEEEecC--
Q 027933 36 FVPNSRKMTTIRRFCCNDLLRFTSVNLDHLT-----ETFNMSFYMTYLARWP--DYFHVAEGPGNRIMGYIMGKVEGQ-- 106 (216)
Q Consensus 36 ~~~~~~~~i~ir~~~~~d~~~l~~l~~~~~~-----~~~~~~~~~~~~~~~~--~~~~v~~~~~g~lvG~~~~~~~~~-- 106 (216)
.+|..+..--+|+++.+|++++.++..+.+. ..+..+.+..++.... -..+|+++.+|++-.++.+...+.
T Consensus 21 klp~~~~~~glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstv 100 (190)
T PF02799_consen 21 KLPEETKTPGLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTV 100 (190)
T ss_dssp ---SS-SSTTEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEE
T ss_pred cCCCCCCCCccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceee
Confidence 4444443334899999999999999766443 3455566676665433 456788867789999887764432
Q ss_pred ---C---CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc
Q 027933 107 ---G---ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY 179 (216)
Q Consensus 107 ---~---~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~ 179 (216)
. ....+++.. .+... ==-++|++.++-.|++ .|++-+.+--.-+|. .|.+.++|..-.-..+||
T Consensus 101 i~~~k~~~l~aAY~fY-~~~~~----~~l~~Lm~DaLi~Ak~-~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YY 170 (190)
T PF02799_consen 101 IGNPKHKTLKAAYSFY-YVATS----TRLKELMNDALILAKN-EGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYY 170 (190)
T ss_dssp SSSSSSSEEEEEEEEE-EEESS----SHHHHHHHHHHHHHHH-TTESEEEEESTTTGG---GTTTTTT-EEEEEEEEEE
T ss_pred cCCCCccceeeeeeee-eeecC----CCHHHHHHHHHHHHHH-cCCCEEehhhhccch---hhHhhCCccCCCCCeEEE
Confidence 1 111233322 22222 1235789999999999 899977665555664 678999999755444554
No 102
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.17 E-value=0.028 Score=49.26 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=56.1
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCce-------------EEE----------------------------
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAY-------------FVD---------------------------- 150 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~-------------~i~---------------------------- 150 (216)
+.|..++|+|+|++.|+|++.++.+.++... .... ++.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG-~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er 693 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFEG-KFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSER 693 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHhc-cCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccC
Confidence 5688999999999999999999999888754 1110 000
Q ss_pred -------EEE-ecCCHHHHHHHHhCCCeEEEEEeccc-cCccceEEEEeccccC
Q 027933 151 -------LFV-RASNTPAIKMYEKLGYVIYRRVLRYY-SGEEDGLDMRKALSRD 195 (216)
Q Consensus 151 -------l~v-~~~N~~a~~~y~k~GF~~~~~~~~~~-~~~~~~~~m~k~L~~~ 195 (216)
+.| .---....+||+|+||..+......- ..++...+|.+.|.++
T Consensus 694 ~perldylGvSfGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~~~ 747 (1011)
T KOG2036|consen 694 PPERLDYLGVSFGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLEGD 747 (1011)
T ss_pred CCcccceeeecccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCCCc
Confidence 000 01124568999999999887543322 2237777888888743
No 103
>PRK14852 hypothetical protein; Provisional
Probab=96.11 E-value=0.044 Score=50.35 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=96.9
Q ss_pred eEEEec-CcCcHHHHHHhhhhhccc-cchhhH----HHHHHhcCC-CeEEEEeccCCcEEEEEEEEEecCC---------
Q 027933 44 TTIRRF-CCNDLLRFTSVNLDHLTE-TFNMSF----YMTYLARWP-DYFHVAEGPGNRIMGYIMGKVEGQG--------- 107 (216)
Q Consensus 44 i~ir~~-~~~d~~~l~~l~~~~~~~-~~~~~~----~~~~~~~~~-~~~~v~~~~~g~lvG~~~~~~~~~~--------- 107 (216)
..+|.+ +.+|..++..|.++.+.. .+..+. ....+...+ ..++++. ..++++|...+......
T Consensus 29 ~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k-~~~~~l~T~t~~~ds~~~Gl~~D~lf 107 (989)
T PRK14852 29 PAIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFK-SYHDVLCTLTHIPDSGLFGLPMDTLY 107 (989)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEec-cCCcEEEEEEEecCCcccCcCHHHHH
Confidence 457777 457788888887776542 222111 122222223 3345555 44667777766554331
Q ss_pred ----------CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHh-CCCeEEEEEe
Q 027933 108 ----------ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEK-LGYVIYRRVL 176 (216)
Q Consensus 108 ----------~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~~ 176 (216)
....+++..++++++.|.+-+--.+++.+.+++.. .++..+.+.|+. .-..||++ +||+.+++.+
T Consensus 108 ~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~-~~~dd~~i~VnP---kH~~FY~r~l~f~~ig~~r 183 (989)
T PRK14852 108 KPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMM-SEVDDILVTVNP---KHVKFYTDIFLFKPFGEVR 183 (989)
T ss_pred HHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHH-cCCCeEEEEECc---chHHHHHHHhCCccccccc
Confidence 12347888999999888877777888888888877 788888777666 66799997 7999999876
Q ss_pred ccccCccceEEEEeccc
Q 027933 177 RYYSGEEDGLDMRKALS 193 (216)
Q Consensus 177 ~~~~~~~~~~~m~k~L~ 193 (216)
.|-.-+.+.+.|..++.
T Consensus 184 ~~p~VnaPAvll~~dl~ 200 (989)
T PRK14852 184 HYDTVDAPAVALRIDLH 200 (989)
T ss_pred cCCCCCcchhheecCHH
Confidence 66555577888887773
No 104
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.87 E-value=0.37 Score=33.75 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=67.5
Q ss_pred eEEEecCcCcHHHHHHhhhhhc----------ccc-----ch-hhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCC
Q 027933 44 TTIRRFCCNDLLRFTSVNLDHL----------TET-----FN-MSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQG 107 (216)
Q Consensus 44 i~ir~~~~~d~~~l~~l~~~~~----------~~~-----~~-~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~ 107 (216)
|.+|++.+.|++.+..+..... ++. .. ...-..+ -...+..|++.++++++.||+.....=..
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrf-y~RsgHSFvA~~e~~~~~GfvLAQaVWQG 79 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRF-YERSGHSFVAEDEGGELQGFVLAQAVWQG 79 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHH-HHCCS--EEEE-ETTEEEEEEEEEEEE-S
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhh-hhccCCcEEEEccCCceeeeeehhHHhcC
Confidence 4689999999999998833221 111 00 0011222 23457778888789999999987654333
Q ss_pred CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 108 ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 108 ~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
....+.+..+.+.|. +......-|+.++.+-+-+ .++-.+.+.+.. ......+.-||...+.
T Consensus 80 drptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYD-a~VYEv~l~l~p---~l~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 80 DRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYD-AGVYEVHLHLDP---ELEAAARAEGFRLGGQ 141 (161)
T ss_dssp SSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHH-TT-SEEEE---T---HHHHHHHHTT----S-
T ss_pred CCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhc-cceEEEEeeCCH---HHHHHHhhcccccCCe
Confidence 333466666666655 5567777899999999888 888888777666 5566677788887653
No 105
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=95.73 E-value=0.4 Score=33.06 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=76.6
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChh
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPE 122 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~ 122 (216)
|++++|.+.-|+.+...-..+...-.-+. ....-.++..++...+.+.++|+..+...... ..-..-.-+|+
T Consensus 1 ~~~~~~~~~~~l~e~~~n~~~~~~~~nnG----d~Y~~K~~~~Y~gVyeg~~l~Gi~~v~~i~~~----~vecHa~y~P~ 72 (151)
T PF11039_consen 1 MIQFKPTRNIDLIEAVGNHADIIAGSNNG----DGYDIKPDQLYLGVYEGGQLGGIVYVEEIQPS----VVECHAMYDPG 72 (151)
T ss_pred CceeccCCcccHHHHhCCCcceeccccCC----cceeecCccEEEEEEeceEEEEEEEEEEEeee----eEEEEeeeccc
Confidence 35666666666555443322222111110 11112233444455478999999887755432 22223446999
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCcc
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEE 183 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~ 183 (216)
+|| ++.+.-....+|+.+...+..+...+...-.-.+-..+=+|.+.++.+.+++.+..
T Consensus 73 fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~id~~~~g~~ 131 (151)
T PF11039_consen 73 FRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHIDDYFKGVD 131 (151)
T ss_pred cch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeHHHHhcCCC
Confidence 998 88888778888888745555554444444434555556689999999988886543
No 106
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.59 E-value=0.045 Score=44.42 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=77.9
Q ss_pred CcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhccc-CCHHH
Q 027933 52 NDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRR-QQLAK 130 (216)
Q Consensus 52 ~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg-~GiG~ 130 (216)
=|++.+..+.+..|.......+++..+...-...+|+ |..-|.+.+...+.......++..++|.++.|| -||+.
T Consensus 345 Ldl~r~q~LI~~SFkRTLd~h~y~~r~~~~La~~iVs----gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd 420 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLDPHYYETRINTPLARAIVS----GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISD 420 (495)
T ss_pred cCcHHHHHHHHHHHhhccCHHHHHHhccCcceeEEee----ccceeeEEEEeeccCCCCCcceeeeeccccccccchHHH
Confidence 3567777888888888888888887776655555554 445667777766555556789999999999999 89999
Q ss_pred HHHHHHHHHHhccCCceEEEEEEecCCHHHHHHH--HhCCCeEE
Q 027933 131 KLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMY--EKLGYVIY 172 (216)
Q Consensus 131 ~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y--~k~GF~~~ 172 (216)
.+..-+.+...+ .+.+-...+| .+.+|| ++.|+-..
T Consensus 421 ~vfniM~e~fP~-----eL~WRSR~~N-~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 421 AVFNIMREEFPN-----ELFWRSRHNN-QVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHHhCcH-----hhhhhhcccC-cchheeeehhhehhhc
Confidence 999887766653 2444455555 456665 34565443
No 107
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=95.53 E-value=0.12 Score=35.04 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=39.2
Q ss_pred EEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhC
Q 027933 113 HVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKL 167 (216)
Q Consensus 113 ~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~ 167 (216)
-+..++|++..|++|+|++|.+.+++.- ++....+.++...+...+|.+|.
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e----~~~p~~~a~DrPS~Kll~Fl~Kh 98 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEE----NVSPHQLAIDRPSPKLLSFLKKH 98 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHc----CCCcccceecCCcHHHHHHHHHh
Confidence 5678999999999999999999987553 33334455677777788888773
No 108
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=95.43 E-value=0.13 Score=35.73 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=56.7
Q ss_pred HHHHHHhc-CCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEE
Q 027933 73 FYMTYLAR-WPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDL 151 (216)
Q Consensus 73 ~~~~~~~~-~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l 151 (216)
.+...+.. +.....+....+|++||.+.+....+.- .-....-+|++..+++|+-.+-..+++|++ .|.+.+++
T Consensus 27 ~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~gl----SaVY~fyDPd~~~~SlG~~~iL~eI~~a~~-~~l~y~YL 101 (128)
T PF04377_consen 27 QYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGL----SAVYTFYDPDYSKRSLGTYSILREIELARE-LGLPYYYL 101 (128)
T ss_pred HHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchh----hheeeeeCCCccccCcHHHHHHHHHHHHHH-cCCCEEee
Confidence 35555553 3344444444799999999888765532 122455699999999999999999999999 99999988
Q ss_pred EEec
Q 027933 152 FVRA 155 (216)
Q Consensus 152 ~v~~ 155 (216)
.-..
T Consensus 102 GY~I 105 (128)
T PF04377_consen 102 GYWI 105 (128)
T ss_pred CeEe
Confidence 6444
No 109
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.39 E-value=0.12 Score=38.15 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=33.2
Q ss_pred cEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 94 RIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 94 ~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
.+||+..=..... ..-.+..+.|.|.||++|+|+.|++...+.++.
T Consensus 66 h~vGyFSKEk~s~---~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~ 111 (188)
T PF01853_consen 66 HIVGYFSKEKESW---DNNNLSCILTLPPYQRKGYGRFLIDFSYELSRR 111 (188)
T ss_dssp EEEEEEEEESS-T---T-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEeccc---CCeeEeehhhcchhhhcchhhhhhhhHHHHhhc
Confidence 4677665332211 125677899999999999999999999888886
No 110
>PHA01733 hypothetical protein
Probab=95.33 E-value=0.073 Score=37.78 Aligned_cols=124 Identities=14% Similarity=-0.004 Sum_probs=64.1
Q ss_pred EEEecCcCcHHHHHH-hhhhhcccc----chhhHHHHHHhcCCCeE-EEEeccCCcEEEEEEEEEecCCCccceEEEEEE
Q 027933 45 TIRRFCCNDLLRFTS-VNLDHLTET----FNMSFYMTYLARWPDYF-HVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVT 118 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~-l~~~~~~~~----~~~~~~~~~~~~~~~~~-~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~ 118 (216)
.||++|.+|+..+.. +..+...+. -........+.. +..+ ..+. .+|+++|.+....+........|+ +.
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~~p~~l~~~~~~-s~~~v~~~~-~nG~l~aI~Gv~~d~~~~vG~pWl--V~ 79 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGHSPLALHLSLDV-SENVVAFVA-PDGSLAGVAGLVEDMGNRVGEIWM--VC 79 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCCCcccchhhhhc-cccceEEEe-cCCcEEEEecccccccCCCCceeE--Ee
Confidence 467888888766555 322211110 011111112222 2333 3333 589999998877632222112222 22
Q ss_pred EChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 119 VSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 119 V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
++.=.+ +-..++..+-.++.+...++.+.=.|...|..+++|.+.+||+.....
T Consensus 80 T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~ 133 (153)
T PHA01733 80 TPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYV 133 (153)
T ss_pred cHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeeccc
Confidence 222222 222333333333332245666666699999999999999999987653
No 111
>PRK00756 acyltransferase NodA; Provisional
Probab=95.18 E-value=0.22 Score=35.79 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=82.3
Q ss_pred cCcCcHHHHHHhhhhhcccc--chhhHHH---HHHhcCCCeEEEEeccCCcEEEEEE----EEEecCCCccceEEEEEEE
Q 027933 49 FCCNDLLRFTSVNLDHLTET--FNMSFYM---TYLARWPDYFHVAEGPGNRIMGYIM----GKVEGQGESWHGHVTAVTV 119 (216)
Q Consensus 49 ~~~~d~~~l~~l~~~~~~~~--~~~~~~~---~~~~~~~~~~~v~~~~~g~lvG~~~----~~~~~~~~~~~~~i~~~~V 119 (216)
++..|..++.+++...+... ++...|+ ......++.-.++.| ..-+++.+. +...+......++++..+|
T Consensus 15 L~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD-~~GVaAH~G~LRRFIkVg~vDlLVaElGLygV 93 (196)
T PRK00756 15 LELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYD-SHGVAAHMGLLRRFIKVGEVDLLVAELGLYGV 93 (196)
T ss_pred cccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeec-CccHhHhHHHHhhhheecccceeEEEeeeeee
Confidence 45677778888877766532 2211111 122233445566663 333333332 1122233334688999999
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHH---hCCCeEE-------EEEeccccCc-----cc
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYE---KLGYVIY-------RRVLRYYSGE-----ED 184 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~---k~GF~~~-------~~~~~~~~~~-----~~ 184 (216)
.|+..|.||+..+ ..+.-.+++ .++..-+.+|.. +.++-.+ +.|...+ .+..+.+.|- +|
T Consensus 94 RpDLEGlGi~~S~-r~m~PvLq~-LgVPF~FGtVR~---al~~Hv~R~~r~g~~ti~~gvrVRSTl~~v~~dlpptr~ed 168 (196)
T PRK00756 94 RPDLEGLGIAHSI-RAMYPVLQE-LGVPFAFGTVRH---ALRNHVERLCRNGLATIVTGVRVRSTLPDVYLDLPPTRTED 168 (196)
T ss_pred ccccccccchhhH-HHHHHHHHh-cCCCeecccchH---HHHHHHHHHhccCcceecccceeeccCccccCCCCCccccc
Confidence 9999999998876 577777777 888877676665 4444444 4455332 2222233222 55
Q ss_pred eEEEEeccccCCcCCC
Q 027933 185 GLDMRKALSRDVEKKS 200 (216)
Q Consensus 185 ~~~m~k~L~~~~~~~~ 200 (216)
.++++..+...-.++|
T Consensus 169 ~lv~V~Pi~r~~seWP 184 (196)
T PRK00756 169 VLVVVFPIGRPMSEWP 184 (196)
T ss_pred cEEEEEeCCCccccCC
Confidence 5666666655555554
No 112
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.76 E-value=0.085 Score=41.28 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=56.3
Q ss_pred ceEEEecCcCcHHHHHHhhhhhccc----cchhh-----------HHHHHHhc-CCCeEEEEec-cCCcEEEEEEEEEe-
Q 027933 43 MTTIRRFCCNDLLRFTSVNLDHLTE----TFNMS-----------FYMTYLAR-WPDYFHVAEG-PGNRIMGYIMGKVE- 104 (216)
Q Consensus 43 ~i~ir~~~~~d~~~l~~l~~~~~~~----~~~~~-----------~~~~~~~~-~~~~~~v~~~-~~g~lvG~~~~~~~- 104 (216)
|+.+||++..|++++.++....-.. +.+.+ .|...... ...+.+|.+| +.|+++|.+.+...
T Consensus 1 mlvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~v 80 (336)
T COG3138 1 MLVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAV 80 (336)
T ss_pred CcccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEee
Confidence 4678999999999999996542110 11111 12222222 2245677775 47999999875531
Q ss_pred cCCCc--------------------------------cceEEEEEEEChhcccCCHHHHHHH
Q 027933 105 GQGES--------------------------------WHGHVTAVTVSPEYRRQQLAKKLMN 134 (216)
Q Consensus 105 ~~~~~--------------------------------~~~~i~~~~V~p~~rg~GiG~~ll~ 134 (216)
+-..+ ...++..++++|++|.-|.|+.|-+
T Consensus 81 Gl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 81 GLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred ccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 11110 1134678999999999888876644
No 113
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.37 E-value=0.19 Score=39.50 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=35.9
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
+..+|||..=...... ...+..+.|.|.||++|+|+.|++...+..+.
T Consensus 139 g~h~vGYFSKEK~s~~---~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~ 186 (290)
T PLN03238 139 GSHIVGYFSKEKVSAE---DYNLACILTLPPYQRKGYGKFLISFAYELSKR 186 (290)
T ss_pred CcEEEEEeceeccccC---CCcEEEEEecChhhhccHhHhHHHHHhHHhhc
Confidence 4558887753332211 24577899999999999999999999888876
No 114
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=93.79 E-value=0.86 Score=35.31 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=58.6
Q ss_pred hHHHHHHhcCC-CeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEE
Q 027933 72 SFYMTYLARWP-DYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVD 150 (216)
Q Consensus 72 ~~~~~~~~~~~-~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~ 150 (216)
..+...+.+.. ...++....+|++||.+.+....+. .--....-+|++-.+++|+-.+-..+++|++ .|.+.++
T Consensus 131 ~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~----lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~-~gl~y~Y 205 (240)
T PRK01305 131 DQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDG----LSAVYTFYDPDEEHRSLGTFAILWQIELAKR-LGLPYVY 205 (240)
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCc----eeeEEEeeCCCccccCCHHHHHHHHHHHHHH-cCCCeEe
Confidence 33556665433 3333333369999999998876553 2223566799999999999999999999999 9999999
Q ss_pred EEEecCC
Q 027933 151 LFVRASN 157 (216)
Q Consensus 151 l~v~~~N 157 (216)
+.-...+
T Consensus 206 LGY~I~~ 212 (240)
T PRK01305 206 LGYWIKG 212 (240)
T ss_pred eeEEECC
Confidence 8755444
No 115
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=93.45 E-value=0.93 Score=38.10 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=70.9
Q ss_pred hhhHHHHHH--hcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEECh--hcccCCHHHHHHHHHHHHHhccCC
Q 027933 70 NMSFYMTYL--ARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSP--EYRRQQLAKKLMNLLEDISDKIDK 145 (216)
Q Consensus 70 ~~~~~~~~~--~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p--~~rg~GiG~~ll~~~~~~a~~~~g 145 (216)
....|.+.. ..+....+.+.+++++++|.+.+........ ..+..+-=-| +|...-+-..+++.+.+++++ .+
T Consensus 20 Qs~~wa~vk~~~gw~~~~vgv~~d~~~v~aa~ll~~~~~~~g--~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk-~~ 96 (406)
T PF02388_consen 20 QSSEWAEVKEKRGWEVERVGVKDDGGEVAAAALLLRKKPFKG--FKYAYIPRGPVMDYSDEELLEFFLEELKKYAKK-KR 96 (406)
T ss_dssp CSHHHHHHCHHTTSEEEEEEEE-TTS-EEEEEEEEEEECTTT--CEEEEETT--EC-TT-HHHHHHHHHHHHHHHCT-TT
T ss_pred hHHHHHHHHHHCCCeEEEEEEEeCCCeEEEEEEEEEeccCCc--eeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-CC
Confidence 334455544 4454445555534578877775554433211 1222222235 778888888999999999998 77
Q ss_pred ceEEEEEE---------------ecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEecccc
Q 027933 146 AYFVDLFV---------------RASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSR 194 (216)
Q Consensus 146 ~~~i~l~v---------------~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~~ 194 (216)
+-.+.+.. ...|...+..++++||...+....+-....+...|+++|..
T Consensus 97 a~~lridP~~~~~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 97 ALFLRIDPNVIYQERDEDGEPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp EEEEEE--S-EEECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEEEGCC
T ss_pred EEEEEEeCchhhhhcccccccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEEEEECCC
Confidence 66655431 23466789999999999987765554435788889999987
No 116
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.17 E-value=0.22 Score=42.15 Aligned_cols=48 Identities=27% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
+-.+|||..=...... ...+..|.|.|.||++|+|+.|++...+..+.
T Consensus 368 G~HiVGYFSKEK~S~~---~nNLACILtLPpyQRKGYGklLIdfSYeLSrr 415 (552)
T PTZ00064 368 GCHIVGYFSKEKVSLL---HYNLACILTLPCYQRKGYGKLLVDLSYKLSLK 415 (552)
T ss_pred CcEEEEEecccccCcc---cCceEEEEecchhhhcchhhhhhhhhhhhhhh
Confidence 4567887643322211 24577899999999999999999998888776
No 117
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.92 E-value=0.041 Score=45.75 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=44.0
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE-----EecCCHHHHHHHHhCCCeEEE
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF-----VRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~-----v~~~N~~a~~~y~k~GF~~~~ 173 (216)
+.|..+.|+|+||+.|+|..-+..+.+|..+ +-+....-. +...-.+-..|+++.||+..-
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~e-RriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIE-RRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHH-hhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 4588999999999999999999999999998 655543321 000000123689999998753
No 118
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=92.79 E-value=0.61 Score=37.81 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=87.2
Q ss_pred EEEeecccceecce--eeccccCCCCceEEEecCcCcHHHHHHhhhhhc-----cccchhhHHHHHHhcCCC--eEEEEe
Q 027933 19 ISYLAVPFNVSFRA--RSFFVPNSRKMTTIRRFCCNDLLRFTSVNLDHL-----TETFNMSFYMTYLARWPD--YFHVAE 89 (216)
Q Consensus 19 ~~~~~~~~~~~~~~--~~~~~~~~~~~i~ir~~~~~d~~~l~~l~~~~~-----~~~~~~~~~~~~~~~~~~--~~~v~~ 89 (216)
..++-+|-.|...- ....+|..+..--+|+++..|.+++.++..+.. ...+..+.+...+....+ ..+|++
T Consensus 234 v~Fs~l~~~mTm~rt~klykLP~~~~T~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVve 313 (421)
T KOG2779|consen 234 VGFSHLSRNMTMQRTIKLYKLPETTKTPGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVE 313 (421)
T ss_pred eccccccccchHhhhHhhccCCCCCCCCCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEE
Confidence 44444555544311 122334433334589999999999999975543 233444555555544333 457888
Q ss_pred ccCCcEEEEEEEEEecCC-----Cc---cceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHH
Q 027933 90 GPGNRIMGYIMGKVEGQG-----ES---WHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAI 161 (216)
Q Consensus 90 ~~~g~lvG~~~~~~~~~~-----~~---~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~ 161 (216)
..+|.+-+|+.+...+.. .. ..+++ ...|..+ -=-.+|+..++-.++. .|+.-+...-.-+| .
T Consensus 314 sp~g~ITDF~SFy~lpsTv~~~~~~ktl~aaYl-yY~v~~~----t~~~~lvnDalilak~-~gfDVFNAld~meN---~ 384 (421)
T KOG2779|consen 314 SPNGKITDFCSFYSLPSTVMGNPKYKTLQAAYL-YYNVATS----TPLLQLVNDALILAKQ-KGFDVFNALDLMEN---E 384 (421)
T ss_pred CCCCcccceeeEEeccccccCCCCcceeeeeeE-EEeccCC----ccHHHHHHHHHHHHHh-cCCceeehhhhhhh---h
Confidence 679999999987754431 11 11222 2222222 1134678888888888 78876655444444 3
Q ss_pred HHHHhCCCeEEEEEecc
Q 027933 162 KMYEKLGYVIYRRVLRY 178 (216)
Q Consensus 162 ~~y~k~GF~~~~~~~~~ 178 (216)
.|..+++|-.-.-...|
T Consensus 385 ~fl~~LkFg~GdG~l~Y 401 (421)
T KOG2779|consen 385 SFLKDLKFGPGDGNLQY 401 (421)
T ss_pred hHHHhcCcCcCCCceeE
Confidence 68899999875433333
No 119
>PLN03239 histone acetyltransferase; Provisional
Probab=92.57 E-value=0.45 Score=38.58 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=34.8
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
+-.+|||..=...... ...+..+.|.|.||++|+|+.|++...+..+.
T Consensus 197 g~h~vGYFSKEK~s~~---~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 197 GFHPVGYYSKEKYSDV---GYNLACILTFPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred ceEEEEEeeecccCCC---CCceEEEEecChhhhcchhhhhHhhhhHhhhh
Confidence 3456776643322111 24577899999999999999999998888876
No 120
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.09 E-value=0.23 Score=41.72 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
+-.+|||..=...... ...+..|.|.|.||++|+|+.|++...+..+.
T Consensus 290 g~h~vGyFSKEk~s~~---~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~ 337 (450)
T PLN00104 290 GCHMVGYFSKEKHSEE---DYNLACILTLPPYQRKGYGKFLIAFSYELSKR 337 (450)
T ss_pred CcEEEEEecccccCcC---CCceEEEEecchhhhcchhheehhheehhhhc
Confidence 4478887743322221 14577899999999999999999988877765
No 121
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=91.91 E-value=0.99 Score=36.65 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=41.6
Q ss_pred cCCcEEEEEEEEEec----CCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 91 PGNRIMGYIMGKVEG----QGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~----~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
.+.++|||+...+.. +.....+.|..++|+...|+++++-.|++++...+.-
T Consensus 143 ~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl 198 (421)
T KOG2779|consen 143 SSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNL 198 (421)
T ss_pred cCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhh
Confidence 467999999866432 2233357899999999999999999999999877765
No 122
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=91.71 E-value=3.1 Score=33.21 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCcEEEEEEEEEecCC---CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhcc-------C-C-ceEEEEEEecCCHH
Q 027933 92 GNRIMGYIMGKVEGQG---ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKI-------D-K-AYFVDLFVRASNTP 159 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~---~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~-------~-g-~~~i~l~v~~~N~~ 159 (216)
-+.+|+.+.+.+.... ......|..+.|+.=|..-|+-..|+++++-.+++- . + --.+.+++.+.+..
T Consensus 177 RetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~ 256 (304)
T PF11124_consen 177 RETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKD 256 (304)
T ss_pred cCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHH
Confidence 6889999988865443 233567889999999999999999999986544431 1 2 22455678899999
Q ss_pred HHHHHHhCCCeEEE
Q 027933 160 AIKMYEKLGYVIYR 173 (216)
Q Consensus 160 a~~~y~k~GF~~~~ 173 (216)
..+..++.||+.+.
T Consensus 257 ~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 257 MKKTLKKKGFKKIS 270 (304)
T ss_pred HHHHHHHCCCeeee
Confidence 99999999999987
No 123
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=2.9 Score=31.91 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHh-CCCe
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEK-LGYV 170 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k-~GF~ 170 (216)
..|..++|++.-|+.|.|.+|++++++. .+...-.|.+.........|.+| .|-+
T Consensus 109 lcILDFyVheS~QR~G~G~~lfdyMl~k----E~vephQ~a~DrPS~kLl~Fm~khYgl~ 164 (264)
T KOG4601|consen 109 LCILDFYVHESEQRSGNGFKLFDYMLKK----ENVEPHQCAFDRPSAKLLQFMEKHYGLK 164 (264)
T ss_pred ceEEEEEeehhhhhcCchHHHHHHHHHh----cCCCchheeccChHHHHHHHHHHhcCcc
Confidence 5688999999999999999999998754 23333335455545556777766 4544
No 124
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.29 E-value=1.3 Score=29.29 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=32.1
Q ss_pred EEEeccCCcEEEEEEEEEecCCC--------------------ccceEEEEEEEChhcccCCHHHHHH
Q 027933 86 HVAEGPGNRIMGYIMGKVEGQGE--------------------SWHGHVTAVTVSPEYRRQQLAKKLM 133 (216)
Q Consensus 86 ~v~~~~~g~lvG~~~~~~~~~~~--------------------~~~~~i~~~~V~p~~rg~GiG~~ll 133 (216)
+++.+.+.++||++.+....... ...+++..++|+|+||++.....|.
T Consensus 33 ~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 33 LLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 34432333699999766433211 2347899999999999998776664
No 125
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=90.07 E-value=7.3 Score=31.14 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=57.5
Q ss_pred eEEEec---CcCcHHHHHHhhhhhcccc--chhhHHHHHH---hcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEE
Q 027933 44 TTIRRF---CCNDLLRFTSVNLDHLTET--FNMSFYMTYL---ARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVT 115 (216)
Q Consensus 44 i~ir~~---~~~d~~~l~~l~~~~~~~~--~~~~~~~~~~---~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~ 115 (216)
..+++. ++++.+++.++..+-.... .........+ .......+++...+|+++|++.+.+..... ...+.
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~~--~~~~~ 210 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGRD--GWSID 210 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-TT--EEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCCc--cEEEE
Confidence 566666 6788888888854433332 1122222222 222345666663499999999998776322 13333
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF 152 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~ 152 (216)
..--+++ -=+|+-..|+..+++.+++ .|+..+.|.
T Consensus 211 ~~k~~~~-a~~G~~e~l~~~~~~~~~~-~g~~~lnLg 245 (299)
T PF09924_consen 211 FEKADPD-APKGIYEFLNVEFAEHLKA-EGVEYLNLG 245 (299)
T ss_dssp EEEE-TT--STTHHHHHHHHHHHHS---TT--EEE--
T ss_pred EEecCCC-CCCcHHHHHHHHHHHhhhh-CCceEEEcc
Confidence 3334555 3469999999999999997 788888754
No 126
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=89.94 E-value=0.6 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=26.8
Q ss_pred eEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 112 GHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 112 ~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
-.+..+.|.|.||++|+|+.|+++--+..+.
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFSYeLSr~ 291 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFSYELSRR 291 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhhhhhhcc
Confidence 4467899999999999999999988877765
No 127
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=89.77 E-value=1.1 Score=36.46 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=32.6
Q ss_pred ceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCC
Q 027933 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASN 157 (216)
Q Consensus 111 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N 157 (216)
...+..+-+.|.||++|+|++|++.+.........+ +.++|...+
T Consensus 217 R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v--~DiTVEdPs 261 (403)
T KOG2696|consen 217 RPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTV--LDITVEDPS 261 (403)
T ss_pred hhhhheeEEeccccCCchHHHHHHHHHHhhccCCce--eEEEecCch
Confidence 356778999999999999999999998555442443 334455444
No 128
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=88.75 E-value=3.5 Score=27.72 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCcEEEEEEEEEecCC---CccceEEEEEEEChhccc-CCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHH
Q 027933 92 GNRIMGYIMGKVEGQG---ESWHGHVTAVTVSPEYRR-QQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMY 164 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~---~~~~~~i~~~~V~p~~rg-~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y 164 (216)
++..-|.+++...... ....+++..++|.+.-|| .|++..+.+.+.+...+ .+...+..+|+ ..++|
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~fp~-----~L~Wrsr~~n~-~n~Wy 87 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDGFPN-----ELIWRSRKDNP-VNKWY 87 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHcCCC-----ceEEEeCCCCc-ccceE
Confidence 4555555555543221 234589999999999997 89999999887753221 26677777774 44544
No 129
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=84.16 E-value=5.5 Score=29.42 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=57.0
Q ss_pred EEEeccCCcEEEEEEEEEecCCCc-------------------------cceEEEEEEEChhcccCCHHHHHHHHHHHHH
Q 027933 86 HVAEGPGNRIMGYIMGKVEGQGES-------------------------WHGHVTAVTVSPEYRRQQLAKKLMNLLEDIS 140 (216)
Q Consensus 86 ~v~~~~~g~lvG~~~~~~~~~~~~-------------------------~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a 140 (216)
+...+.+|++++.+.+......+. ..++++.++.. +.|.+..|+..+...+
T Consensus 37 l~l~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L 112 (179)
T PF12261_consen 37 LALRDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNLASF----SPGAARLLFAALAQLL 112 (179)
T ss_pred hhhccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeechhhc----CcccHHHHHHHHHHHH
Confidence 334457899999998876543210 12445555543 5789999999999999
Q ss_pred hccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 141 DKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 141 ~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
.. .|++.+.. +.....++++.|+|.....
T Consensus 113 ~~-~g~~w~vf---TaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 113 AQ-QGFEWVVF---TATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred HH-CCCCEEEE---eCCHHHHHHHHHcCCCcee
Confidence 98 89886544 5556899999999998653
No 130
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=5.8 Score=30.71 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=49.0
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCC
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASN 157 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N 157 (216)
.|++|+.+......+. .......-+|++...++|+-.+-.-+.+|++ .|...++|.-...+
T Consensus 159 ~G~LvAVavtDvL~dG----lSsVY~FydPd~s~~SLGt~~iL~~I~~aq~-~~l~yvYLGYwI~~ 219 (253)
T COG2935 159 EGKLVAVAVTDVLPDG----LSSVYTFYDPDMSKRSLGTLSILDQIAIAQR-LGLPYVYLGYWIKG 219 (253)
T ss_pred CCcEEEEEeeecccCc----ceeEEEEeCCChhhhcchHHHHHHHHHHHHH-hCCCeEEEEEEECC
Confidence 7999999988876554 3334566799999999999888888889999 89999998755544
No 131
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=83.41 E-value=5.5 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=23.6
Q ss_pred ceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
+..+.=.|...|..+++|.+++|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 5556667999999999999999998654
No 132
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=81.80 E-value=26 Score=28.36 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=62.3
Q ss_pred EEEecCcCcHHHHHHhhhhhcccc--------chhhHHHHHHhcCC---CeEEEEecc--CCcEEEEEEEEEec----CC
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTET--------FNMSFYMTYLARWP---DYFHVAEGP--GNRIMGYIMGKVEG----QG 107 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~--------~~~~~~~~~~~~~~---~~~~v~~~~--~g~lvG~~~~~~~~----~~ 107 (216)
.|...+..+++++..+..+.+-+. |..+ |.++.-..+ ..+.+.... ..++|||+...+.. ..
T Consensus 83 ~idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~E-Fl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK 161 (451)
T COG5092 83 VIDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVE-FLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGK 161 (451)
T ss_pred eEeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHH-HHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEccc
Confidence 455566777888888866654432 2222 333333323 233333323 45999998755422 22
Q ss_pred CccceEEEEEEEChhcccCCHHHHHHHHHHHHHhc
Q 027933 108 ESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDK 142 (216)
Q Consensus 108 ~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~ 142 (216)
...++.+..++|+.+.|++.+.-.|++.+...+.-
T Consensus 162 ~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~ 196 (451)
T COG5092 162 RSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANV 196 (451)
T ss_pred ccccceEEEEEEehhhhhCccchHHHHHHHHhhhh
Confidence 23368899999999999999999999999887765
No 133
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=80.76 E-value=14 Score=24.43 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=43.6
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHH
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMY 164 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y 164 (216)
++..=|.+++.... ...+++..++|.+.-++.|++..+.+.+.+... .+...+..+|+ ..++|
T Consensus 17 de~y~~~AIvt~~~---~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~~------~L~Wrsr~~n~-~n~Wy 79 (98)
T cd03173 17 DEPLEGVAIVTYEG---NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDFP------SLLWRVRENDA-NLKWY 79 (98)
T ss_pred cCCccEEEEEecCC---CCCEEEEEEEEcccccccCHHHHHHHHHHhhCC------eeEEEeCCCCC-ccceE
Confidence 34455555555433 225899999999999999999999988765533 47677777774 44444
No 134
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=80.71 E-value=12 Score=31.09 Aligned_cols=121 Identities=8% Similarity=-0.000 Sum_probs=71.9
Q ss_pred eEEEecC-----cCcHHHHHHhhhhhccccchh-----hHHHHHHhcCCC-eEEEEeccCCcEEEEEEEEEecCCCccce
Q 027933 44 TTIRRFC-----CNDLLRFTSVNLDHLTETFNM-----SFYMTYLARWPD-YFHVAEGPGNRIMGYIMGKVEGQGESWHG 112 (216)
Q Consensus 44 i~ir~~~-----~~d~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~-~~~v~~~~~g~lvG~~~~~~~~~~~~~~~ 112 (216)
++++.++ +++++.+..+..+.+...+.. .+|......-++ ..+++...+|++||++.....++ ..
T Consensus 200 i~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~~~----~L 275 (370)
T PF04339_consen 200 IRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRGDD----TL 275 (370)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEeCC----EE
Confidence 5565554 455677777766655544443 335555544343 33444447999999998777644 24
Q ss_pred EEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 113 HVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 113 ~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
+-..+....++.+.-+ ..+.-..+++|.+ .|++.+........ =...||+.+.+..
T Consensus 276 yGRYwG~~~~~~~LHF-e~cYYq~Ie~aI~-~Gl~~f~~GaqGEH------K~~RGf~P~~t~S 331 (370)
T PF04339_consen 276 YGRYWGCDEEIPFLHF-ELCYYQGIEYAIE-HGLRRFEPGAQGEH------KIARGFEPVPTYS 331 (370)
T ss_pred EEeeecccccccCcch-HHHHHHHHHHHHH-cCCCEEECCcchhH------HHHcCCcccccee
Confidence 4344555566554432 2334567899999 89998766433211 1247999887654
No 135
>PRK04531 acetylglutamate kinase; Provisional
Probab=79.83 E-value=12 Score=31.49 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=61.0
Q ss_pred CcHHHHHHhhhhhccccchhhHHHHHHhcCCCeEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHH
Q 027933 52 NDLLRFTSVNLDHLTETFNMSFYMTYLARWPDYFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKK 131 (216)
Q Consensus 52 ~d~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ 131 (216)
=|.+.+..+....+..... ..++.. ...+.+. .++..=|.+.+...+ ...++..++|.+.-||.|++..
T Consensus 262 ~d~~~l~~ll~~sf~r~~~----~~y~~~--~~~~~~y-~~~~y~~~Aiv~~~~----~~~~Ldkf~v~~~~~~~~v~d~ 330 (398)
T PRK04531 262 LDLERLNLLIESSFGRTLK----PDYFDT--TQLLRAY-VSENYRAAAILTETG----GGPYLDKFAVLDDARGEGLGRA 330 (398)
T ss_pred cCHHHHHHHHhhhcccchH----HHHhcc--CCceEEE-EeCCCcEEEEEecCC----CceEeEEEEEccchhhcChHHH
Confidence 3666666666444443322 233332 1222222 245555555555432 2589999999999999999999
Q ss_pred HHHHHHHHHhccCCceEEEEEEecCCHHHHHHH-Hh-CCCeE
Q 027933 132 LMNLLEDISDKIDKAYFVDLFVRASNTPAIKMY-EK-LGYVI 171 (216)
Q Consensus 132 ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y-~k-~GF~~ 171 (216)
+.+.+.+... .+.+.+..+|+ ..++| +| -|+..
T Consensus 331 vf~~~~~~~~------~L~Wrsr~~n~-~~~Wyf~~s~G~~~ 365 (398)
T PRK04531 331 VWNVMREETP------QLFWRSRHNNT-INKFYYAESDGCIK 365 (398)
T ss_pred HHHHHHhhCC------ceEEEcCCCCC-ccceeeecccceEe
Confidence 9988765543 47777777775 34554 23 45544
No 136
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=79.18 E-value=1.2 Score=36.11 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=30.4
Q ss_pred EEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHh
Q 027933 95 IMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISD 141 (216)
Q Consensus 95 lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~ 141 (216)
+|||..=...... .-.+..+-+.|.||++|+|+.|+++.....+
T Consensus 249 ~vGyFSKEK~S~~---~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 249 LVGYFSKEKESEQ---DYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred eeeeechhhcccc---cCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 6777643322222 2456788999999999999999987654444
No 137
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=78.84 E-value=8.7 Score=30.19 Aligned_cols=101 Identities=8% Similarity=-0.031 Sum_probs=62.1
Q ss_pred EEEecCcCcHHHHHHhhhhhccccchhh-----HHHHHHhcCCCe--EEEEeccCCcEEEEEEEEEecCCCccceEEEEE
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFNMS-----FYMTYLARWPDY--FHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAV 117 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~~~-----~~~~~~~~~~~~--~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~ 117 (216)
.++++..=..+++.++..+.|...|... .+.+.+..-.+. -.|+. -+|++||+-.+........-.......
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg~~~~~~~~l~e~f~~Lr~~~fG~vL~-l~~~P~Aiqlv~k~es~~wv~~D~iNg 206 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWGFRCYGKEHLAEFFSELRHMIFGSVLF-LNGQPCAIQLVYKVESPKWVYFDYING 206 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhHHhheeeEEE-ECCcceEEEEEEEecCCCeEEEecccC
Confidence 5677776667777777666666555422 233333332222 12333 589999998777665543323334467
Q ss_pred EEChhcccCCHHHHHH----HHHHHHHhccCCce
Q 027933 118 TVSPEYRRQQLAKKLM----NLLEDISDKIDKAY 147 (216)
Q Consensus 118 ~V~p~~rg~GiG~~ll----~~~~~~a~~~~g~~ 147 (216)
++||+++.--.|+-|+ +.+.+.+++ .|-.
T Consensus 207 G~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~-~~k~ 239 (264)
T PF07395_consen 207 GYDPECRDFSPGSILMWLNIQDAWEYCRA-QGKP 239 (264)
T ss_pred ccCcccccCCCccEEEEeeHHHHHHHHHH-hCCc
Confidence 7899999999999774 556666666 4443
No 138
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=78.82 E-value=5.9 Score=32.87 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=57.9
Q ss_pred eEEEEeccCCcEEEEEEEEEecCCCccc-----------------------------eEEEEEEEChhcccCCHHHHHHH
Q 027933 84 YFHVAEGPGNRIMGYIMGKVEGQGESWH-----------------------------GHVTAVTVSPEYRRQQLAKKLMN 134 (216)
Q Consensus 84 ~~~v~~~~~g~lvG~~~~~~~~~~~~~~-----------------------------~~i~~~~V~p~~rg~GiG~~ll~ 134 (216)
..+++. ++|++||.+-+.......... +.=..+.++++.....+...|++
T Consensus 45 ~hl~~~-~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~ 123 (370)
T PF04339_consen 45 RHLTLR-DGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQ 123 (370)
T ss_pred eEEEEE-ECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHH
Confidence 345555 779999998666443211100 11225777888888889999999
Q ss_pred HHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEE
Q 027933 135 LLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIY 172 (216)
Q Consensus 135 ~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~ 172 (216)
.+.+.+.+ .|+..+.+. -.++.-....+..||..-
T Consensus 124 ~~~~~a~~-~~~Ss~h~l--F~~~~~~~~l~~~G~~~r 158 (370)
T PF04339_consen 124 ALEQLAEE-NGLSSWHIL--FPDEEDAAALEEAGFLSR 158 (370)
T ss_pred HHHHHHHH-cCCCcceee--cCCHHHHHHHHhCCCcee
Confidence 99999999 888876653 333445567788999764
No 139
>PF10530 Toxin_35: Toxin with inhibitor cystine knot ICK or Knottin scaffold; InterPro: IPR019553 Spider toxins of the CSTX family are ion channel toxins containing an inhibitor cystine knot (ICK) structural motif or Knottin scaffold. The four disulphide bonds present in the CSTX spider toxin family are arranged in the following pattern: 1-4, 2-5, 3-8 and 6-7. CSTX-1 is the most important component of Cupiennius salei (Wandering spider) venom in terms of relative abundance and toxicity and therefore is likely to contribute significantly to the overall toxicity of the whole venom. CSTX-1 blocked rat neuronal L-type, but no other types of HVA Cav channels []. Interestingly, the omega-toxins from Phoneutria nigriventer (Brazilian armed spider) venom (another South American species also belonging to the Ctenidae family) are included as they carry the same disulphide bond arrangement. suggested that CSTX-1 may interact with Cav channels. Calcium ion voltage channel heteromultimer containing an L-type pore-forming alpha1-subunit is the most probable candidate for the molecular target of CSTX-1 these toxins [].
Probab=78.60 E-value=0.94 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=8.6
Q ss_pred CCCCCcccCCc
Q 027933 1 MGHHRSCKNGL 11 (216)
Q Consensus 1 ~~~~~~~~~~~ 11 (216)
.|||.||.+..
T Consensus 2 I~~~~sC~~dk 12 (23)
T PF10530_consen 2 IGKRHSCTHDK 12 (23)
T ss_pred CccccccccCC
Confidence 48999998753
No 140
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=76.49 E-value=6.7 Score=27.18 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=35.7
Q ss_pred cccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEE
Q 027933 123 YRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIY 172 (216)
Q Consensus 123 ~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~ 172 (216)
=||-|+|+++++.+-+.+.+ .+.+...-.|.-|..-+.|.|-..-
T Consensus 7 GQGGGiG~~iv~~lr~~~~~-----~~eI~AlGTNa~AT~~MlKaGA~~g 51 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPE-----EVEIIALGTNAIATSAMLKAGANEG 51 (131)
T ss_pred CCCChhHHHHHHHHHHhCCC-----CcEEEEEehhHHHHHHHHHcCCCCc
Confidence 48999999999999887765 2556666778889999999988653
No 141
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=74.47 E-value=12 Score=27.38 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHH---HHHHhCCCeEEEEEeccccCccceEEEEeccccCCc
Q 027933 127 QLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAI---KMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDVE 197 (216)
Q Consensus 127 GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~---~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~~~~~ 197 (216)
+.-++=+-+++++|.+...+.++.+.+.+.+..-- +-+.=+||+.+......-....+.+.|+..+.++..
T Consensus 115 ~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp~~~~ffM~Y~~er~~~ 188 (191)
T KOG4387|consen 115 VGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPPRPDVFFMVYPLERDVS 188 (191)
T ss_pred ccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCCccceEEEEEeeccccc
Confidence 44455566677777776788899888887665433 333447999876542222333888999998876543
No 142
>PHA02769 hypothetical protein; Provisional
Probab=74.29 E-value=3.6 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHH---HHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 129 AKKLMNLLE---DISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 129 G~~ll~~~~---~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
|..|++++. +.++. .|+..+ ++...-.-+.++|.|.||+.++..
T Consensus 94 gd~lvnfl~~l~~k~~~-dg~evl--wtlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKK-DGFEVL--WTLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhc-CCeEEE--EEecCCCcchhHHhhhhhhHhccc
Confidence 455666554 44445 566653 333333357899999999998754
No 143
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=70.41 E-value=5.1 Score=26.81 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=17.5
Q ss_pred EEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 148 FVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
.+.+.|.. =.+|++||+++||+...
T Consensus 3 ~i~l~V~D-~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVAD-MAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEecc-HHHHHHHHHHhCceecC
Confidence 34455544 34799999999998753
No 144
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=67.28 E-value=42 Score=32.34 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=49.3
Q ss_pred EEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEec
Q 027933 86 HVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRA 155 (216)
Q Consensus 86 ~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~ 155 (216)
+++.+.+|+++|++.+.+.... ...+..+.-+|+ -=.|+-..|+-.++.++++ .|+..+.+....
T Consensus 423 ~~a~d~~G~i~af~s~~p~~~~---g~slDLMRr~pd-apnGvmE~L~~~l~~~~k~-~G~~~~sLg~AP 487 (1094)
T PRK02983 423 VEAHDADGQVVALLSFVPWGRR---GLSLDLMRRSPD-APNGVIELMVAELALEAES-LGITRISLNFAV 487 (1094)
T ss_pred EEEECCCCeEEEEEEEeeeCCC---CEEEEecccCCC-CCCCHHHHHHHHHHHHHHH-cCCCEEEechhh
Confidence 4455578999999999986432 245555555666 3689999999999999999 999999886443
No 145
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=66.27 E-value=5.9 Score=27.37 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=20.6
Q ss_pred CceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
++..+.+.|.. -.++++||+++||+....
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 34556665554 347999999999987654
No 146
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=64.29 E-value=67 Score=25.07 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=25.4
Q ss_pred ceEEEEEEEChhcccCCHHHHHHHHHHHHH
Q 027933 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDIS 140 (216)
Q Consensus 111 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a 140 (216)
.+-|..++|.+--|++||++.|+..+....
T Consensus 183 ~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 183 ICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred EeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 356889999999999999999999875443
No 147
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=63.06 E-value=11 Score=30.06 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=57.4
Q ss_pred EEEecCcCcHHHHHHhhhhhccccch-------hhHHHHHHhcCCCe--EEEEeccCCcEEEEEEEEEecCCCccceEEE
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTETFN-------MSFYMTYLARWPDY--FHVAEGPGNRIMGYIMGKVEGQGESWHGHVT 115 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~~~~-------~~~~~~~~~~~~~~--~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~ 115 (216)
.++++..=-.++++++..+.|...|. ...+.+.+..-.+. -.|+. -+|+++|+-.+.......--.....
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~l~fG~VLf-l~~~PcA~qlv~k~eSp~wi~~D~i 234 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRHLLFGHILY-IEGIPCAFDIVLKSESQMNVYFDVP 234 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHHhheeeEEE-ECCcceEEEEEEEecCCCcEEEecc
Confidence 46666655566666666555554443 22233333332222 12333 5899999988776655443233444
Q ss_pred EEEEChhcccCCHHHHHH----HHHHHHHhc
Q 027933 116 AVTVSPEYRRQQLAKKLM----NLLEDISDK 142 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll----~~~~~~a~~ 142 (216)
..++||++..--.|+-|+ +.+.+.+++
T Consensus 235 NgG~Dpe~~~~spGSIL~WlNi~~A~~~~~~ 265 (298)
T PRK15312 235 NGAVKNECMPLSPGSILMWLNISRARHYCQE 265 (298)
T ss_pred cCccCcccccCCCccEEEEecHHHHHHHHHh
Confidence 677999999999888764 455555555
No 148
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=62.08 E-value=43 Score=22.48 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=27.9
Q ss_pred EChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHh---CCCeEEEEEeccccC---ccceEEEEec
Q 027933 119 VSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEK---LGYVIYRRVLRYYSG---EEDGLDMRKA 191 (216)
Q Consensus 119 V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k---~GF~~~~~~~~~~~~---~~~~~~m~k~ 191 (216)
+.+...++|. ++-+-++++.|.+..++..+.+.+..+......+-+. .||+.+.....-.+. ..+.+.|..+
T Consensus 30 ip~~~~~~~~-K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~~~~~~~~~~s~~~lfm~~e 107 (108)
T PF02100_consen 30 IPSSALGQGS-KESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPGHPSVPPDITSPDWLFMGYE 107 (108)
T ss_dssp -SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE----SS-SS----S--EEEEE-
T ss_pred ECCccccccc-HHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCCCCCCCCcCCCCCEEEEEEE
Confidence 4555555553 5556667778875578999998888766554444443 688887653211112 2455555543
No 149
>PHA00771 head assembly protein
Probab=61.94 E-value=50 Score=22.85 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=55.4
Q ss_pred EEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHH
Q 027933 85 FHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMY 164 (216)
Q Consensus 85 ~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y 164 (216)
.++.....|+.=|.+.+.....- ..-..-.-+|++||+- + +.-....+|+.+...+..+...+...-.-.+-..
T Consensus 39 ~Y~g~~~~~~yeGivl~~eV~p~----~~ecHa~y~P~fRG~y-a-~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic 112 (151)
T PHA00771 39 RYFEVNVHGQFGGIVYYNEIQPL----TFDCHAMYLPEIRGFS-K-EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYC 112 (151)
T ss_pred EEEeecccceeeeEEEEEEeeeE----EEEEEeeeCccccchh-H-HHHHHHHHHHhcCCceeEEEEecccccccchhhh
Confidence 34443356666666664433221 1112334589999873 3 6666666677664555555444444443455555
Q ss_pred HhCCCeEEEEEeccccCccce
Q 027933 165 EKLGYVIYRRVLRYYSGEEDG 185 (216)
Q Consensus 165 ~k~GF~~~~~~~~~~~~~~~~ 185 (216)
+=+|.+.++.+.+++.+..+.
T Consensus 113 ~lig~rRVG~id~a~~g~~~v 133 (151)
T PHA00771 113 AMIGLKRVGTIKKYFKGVDDV 133 (151)
T ss_pred hhhCCceeeeHHHHhcCCCce
Confidence 668999999999888665333
No 150
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=59.38 E-value=28 Score=28.16 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=71.3
Q ss_pred EEEecCcCcHHHHHHhhhhhccc-----cchhhHHHHHHhc------C-CCeEEEEeccCCcEEEEEEEEEecCC-----
Q 027933 45 TIRRFCCNDLLRFTSVNLDHLTE-----TFNMSFYMTYLAR------W-PDYFHVAEGPGNRIMGYIMGKVEGQG----- 107 (216)
Q Consensus 45 ~ir~~~~~d~~~l~~l~~~~~~~-----~~~~~~~~~~~~~------~-~~~~~v~~~~~g~lvG~~~~~~~~~~----- 107 (216)
-+|++..+|.+++..+..+.... .+..+.+...+.. . -.+.+|++..+|+|-+|..+...+..
T Consensus 260 GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n~ 339 (451)
T COG5092 260 GLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIENK 339 (451)
T ss_pred ccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecCc
Confidence 47899999999999996553321 1111112211111 1 12346677679999999877654421
Q ss_pred C---ccceEEEEEEEChhcccCC------H---HHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 108 E---SWHGHVTAVTVSPEYRRQQ------L---AKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 108 ~---~~~~~i~~~~V~p~~rg~G------i---G~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
. ...+++...+.+..+..-- + -..|+..++-.++. .++..+-+.+..+|. -|...++|..-.-.
T Consensus 340 kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~-~~~DVFNalt~~dN~---lFL~dLkFg~GdGf 415 (451)
T COG5092 340 KYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKV-EGCDVFNALTMMDNS---LFLADLKFGCGDGF 415 (451)
T ss_pred cccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhhhhhccch---hHHHhcCccCCCce
Confidence 1 1125565555555333211 1 12344455556666 677665555555552 57778999875444
Q ss_pred eccc
Q 027933 176 LRYY 179 (216)
Q Consensus 176 ~~~~ 179 (216)
.+||
T Consensus 416 lnyY 419 (451)
T COG5092 416 LNYY 419 (451)
T ss_pred eEEE
Confidence 4443
No 151
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=54.64 E-value=83 Score=27.67 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=48.5
Q ss_pred EEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEE
Q 027933 86 HVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFV 153 (216)
Q Consensus 86 ~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v 153 (216)
+.+.+.+|+++||+.+.+..... ...+.-+.-+|+ ==+|+-..|...++.++++ .|+..+.+..
T Consensus 395 va~~~~~g~VvaFa~l~~~~~~~--~~SlDlMR~sp~-ap~g~mdfLf~~li~~aKe-~G~~~fsLgm 458 (538)
T COG2898 395 VAAVDNEGEVVAFANLMPTGGKE--GYSLDLMRRSPD-APNGTMDFLFSELILWAKE-EGYQRFSLGM 458 (538)
T ss_pred eeEEcCCCCeEEEEeecccCCcc--eeEEEeeecCCC-CCchHHHHHHHHHHHHHHH-cCCeEEecCC
Confidence 44455789999999998765433 245555666666 3468999999999999999 9999988753
No 152
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=54.62 E-value=15 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=19.3
Q ss_pred ceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+..+.+.|.. =.+|.+||+.+||+....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 3455555554 347999999999987654
No 153
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.47 E-value=28 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred HHHHhccCCceEEEEE---EecCCHHHHHHHHhCCCeEEEEE
Q 027933 137 EDISDKIDKAYFVDLF---VRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 137 ~~~a~~~~g~~~i~l~---v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
.+-++. .+++++.+- +...|.+...|+++.||++++..
T Consensus 110 v~aL~a-l~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 110 VEALNA-LGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHHh-hCcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 344455 677776653 56788899999999999998653
No 154
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=53.35 E-value=68 Score=24.24 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHhcc-CCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 127 QLAKKLMNLLEDISDKI-DKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 127 GiG~~ll~~~~~~a~~~-~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
|.|..++..+++...+. .....+.|.........+++...+||....+..
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEE
Confidence 77888888888877652 345677777777777788888999999988753
No 155
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=52.90 E-value=17 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=19.4
Q ss_pred ceEEEEEEecCCHHHHHHHHhCCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+..+.+.|.. =.++.+||..+||+....
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4455555443 347999999999998643
No 156
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.12 E-value=13 Score=24.96 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.1
Q ss_pred CHHHHHHHHhCCCeEEE
Q 027933 157 NTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 157 N~~a~~~y~k~GF~~~~ 173 (216)
=.+|++||+.+||+...
T Consensus 11 l~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 11 LEKSTAFYTALGFEFNP 27 (124)
T ss_pred HHHHHHHHHHCCCEEcc
Confidence 34799999999999764
No 157
>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]
Probab=51.90 E-value=1.5e+02 Score=25.08 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred hhhccccchhhHHHHHHhcCCC----eEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHH
Q 027933 62 LDHLTETFNMSFYMTYLARWPD----YFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLE 137 (216)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~ 137 (216)
.+.|...|...++......... ..+... .+|.+|+......... ..+-....++|++-.--=|-.|+..++
T Consensus 247 ~Dlf~~~~t~~fl~dL~~~~~~d~~~rl~gL~-~G~~lvAV~~~lr~~~----t~h~~l~a~dpe~~~~SPG~~lf~d~i 321 (406)
T COG5653 247 FDLFRAGWTRDFLRDLFTQRAEDGSGRLFGLH-AGGRLVAVHGLLRQGG----TYHAWLGAIDPEFARASPGMLLFLDLI 321 (406)
T ss_pred ccccccchHHHHHHHHHhccCcCCceEEEEEe-eCCEEEEEEeeeccCC----EEEEEeeccCHHHhhcCchHHHHHHHH
Confidence 3456667777776666554332 233334 6789988776654433 233345789999998888999999999
Q ss_pred HHHhccCCceEEEEEEec
Q 027933 138 DISDKIDKAYFVDLFVRA 155 (216)
Q Consensus 138 ~~a~~~~g~~~i~l~v~~ 155 (216)
+++.+ .|+..+-+.|..
T Consensus 322 ~~~~~-~g~~~~DfgvG~ 338 (406)
T COG5653 322 EWACG-QGLARFDFGVGD 338 (406)
T ss_pred HHHhc-CCCeEEeecCCC
Confidence 99999 899887776554
No 158
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.02 E-value=14 Score=24.43 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=15.3
Q ss_pred CHHHHHHHHhCCCeEEEEE
Q 027933 157 NTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 157 N~~a~~~y~k~GF~~~~~~ 175 (216)
=.++++||+.+||+.....
T Consensus 12 l~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 12 FAESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHHhCCeeEecC
Confidence 3479999999999987643
No 159
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=49.67 E-value=31 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=17.5
Q ss_pred EEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 149 VDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 149 i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
+.+.|.. -++|++||++ +||+..++.
T Consensus 6 v~irV~D-lerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 6 FVFKVGN-RNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEeCC-HHHHHHHHHHhcCCEEEeee
Confidence 3344433 4589999965 899987643
No 160
>PRK14968 putative methyltransferase; Provisional
Probab=49.17 E-value=95 Score=22.35 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 131 KLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 131 ~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.+++.+...++. .|.-.+.......+.....+..+.||+......
T Consensus 129 ~~i~~~~~~Lk~-gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 129 RFLDEVGRYLKP-GGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred HHHHHHHHhcCC-CeEEEEEEcccCCHHHHHHHHHHCCCeeeeeee
Confidence 456666677766 554333333333456688999999998776543
No 161
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=48.88 E-value=26 Score=23.04 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEEEe
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRRVL 176 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~~ 176 (216)
+..+.+.|..-+ ++..||++ +||+.+....
T Consensus 2 l~Hi~i~v~d~~-~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDLE-KAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCHH-HHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCHH-HHHHHHHHHhCCcEEeeec
Confidence 345666555544 79999998 8999987765
No 162
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=47.79 E-value=28 Score=23.87 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
.+.+.|. +=.++++||++ +||+.....
T Consensus 3 Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 3 HVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 4555553 34479999999 999987654
No 163
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=46.52 E-value=39 Score=24.63 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=27.4
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..++|.-|+|.++++. .|++++.+ .+.|+.-..-.+.+|-++++..
T Consensus 122 ~~d~R~ygigaqIL~d--------LGV~~~rL--Ltnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 122 PEDLRDYGIGAQILRD--------LGVKKMRL--LTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp -S----THHHHHHHHH--------TT--SEEE--E-S-HHHHHHHHHTT--EEEEE
T ss_pred ccccccHHHHHHHHHH--------cCCCEEEE--CCCChhHHHHHhcCCCEEEEEe
Confidence 5788999999998863 67777655 5667788888889999988764
No 164
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=46.11 E-value=21 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.2
Q ss_pred CHHHHHHHHhCCCeEEEEE
Q 027933 157 NTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 157 N~~a~~~y~k~GF~~~~~~ 175 (216)
=.+|++||+++||+.....
T Consensus 13 l~~s~~FY~~lG~~~~~~~ 31 (120)
T cd08350 13 LDATEAFYARLGFSVGYRQ 31 (120)
T ss_pred HHHHHHHHHHcCCEEEecC
Confidence 3479999999999987544
No 165
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=46.04 E-value=25 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.8
Q ss_pred CCceEEEEEEecCCHHHHHHHHh-CCCeEEE
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEK-LGYVIYR 173 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~ 173 (216)
+++..+.+.|..-. +|+.||++ +||+...
T Consensus 3 ~~i~Hv~i~V~Dle-~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 3 RTFSHIGISVPDLD-AAVKFYTEVLGWYLIM 32 (162)
T ss_pred ceEEEEEEEeCCHH-HHHHHHHHhcCCEEEe
Confidence 34666777665544 79999987 8998753
No 166
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=42.92 E-value=36 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=18.8
Q ss_pred eEEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 147 YFVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 147 ~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
..+.+.|..- ..+.+||++ +||+.....
T Consensus 3 ~hv~l~v~d~-~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 3 HHVTLITRDA-QETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred ccEEEEcCCh-hHhHHHHHHccCCEEeeeE
Confidence 3455554433 369999986 899987553
No 167
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=42.79 E-value=38 Score=26.27 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccCCceEEEEE---EecCCHHHHHHHHhCCCeEEEEE
Q 027933 130 KKLMNLLEDISDKIDKAYFVDLF---VRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 130 ~~ll~~~~~~a~~~~g~~~i~l~---v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..-..++.+.++. .|+++|.+- ...-|....+||++.||++....
T Consensus 105 tt~~~A~~~AL~a-lg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 105 VTPSSAAVDGLAA-LGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eCHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 3455666777777 899998774 44566778999999999998753
No 168
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=42.05 E-value=1.3e+02 Score=21.58 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=38.0
Q ss_pred cCCHHH-HHHHHHHHHHhccCCceEEEEEE-----------ecCCHHHHHHHHhCCCeEEEE
Q 027933 125 RQQLAK-KLMNLLEDISDKIDKAYFVDLFV-----------RASNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 125 g~GiG~-~ll~~~~~~a~~~~g~~~i~l~v-----------~~~N~~a~~~y~k~GF~~~~~ 174 (216)
+.-++. ...+.+.+.+.+ .|++.+.+.+ ...-+.|++-..+.|+++...
T Consensus 69 sTpyAAq~aa~~~a~k~~~-~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I 129 (149)
T PTZ00129 69 SSPYAAMMAAQDVAARCKE-LGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRI 129 (149)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 334555 456667888888 9999999988 456678999999999998754
No 169
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=41.98 E-value=13 Score=30.31 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=15.3
Q ss_pred EEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCH
Q 027933 86 HVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQL 128 (216)
Q Consensus 86 ~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~Gi 128 (216)
++++ +|++||-..+......+ ..+..-.+...|||||+
T Consensus 319 F~le--hGQ~vgrLvyE~m~~~P---~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 319 FILE--HGQIVGRLVYERMAERP---ERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EEEE--TT-EEEEEEEEEBSS-------TTSS-----------
T ss_pred eeee--CCcEEEEEEehhhccCc---cccccccccccchhhhh
Confidence 4444 89999999888765543 22334457889999986
No 170
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=41.25 E-value=1e+02 Score=22.54 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=30.7
Q ss_pred CceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccccCccceEEEEecccc
Q 027933 145 KAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSR 194 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~m~k~L~~ 194 (216)
++..+.+.+...|.....+.+..||+..+.. +.|.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~----------~~~~~~~~~ 42 (194)
T PRK10975 3 AFSLVQAKVAASDTALLDALQQLGFQLVEGE----------VDFALPVGN 42 (194)
T ss_pred ccceEEEEechhhhHHHHHHHhcCCEeeeeE----------EEEEeeccc
Confidence 5667888888889888999999999987654 346666643
No 171
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=40.10 E-value=38 Score=22.47 Aligned_cols=28 Identities=36% Similarity=0.286 Sum_probs=19.2
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+..+.+.|.. =.++.+||.+ +||+....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeee
Confidence 4455565554 3479999986 99998654
No 172
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.14 E-value=49 Score=21.61 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|.. =.++.+||.+ +||+....
T Consensus 3 ~~~hi~l~v~d-~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSD-YEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCC-HHHHHHHHHHhcCCEEeee
Confidence 55667776654 3478999985 99997643
No 173
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=37.06 E-value=77 Score=17.57 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=15.3
Q ss_pred HHHhcCCCeEEEEeccCCcEEEEEE
Q 027933 76 TYLARWPDYFHVAEGPGNRIMGYIM 100 (216)
Q Consensus 76 ~~~~~~~~~~~v~~~~~g~lvG~~~ 100 (216)
+.+.......+.+.+++|+++|.+.
T Consensus 23 ~~~~~~~~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 23 EIMRKNGISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp HHHHHHTSSEEEEESTTSBEEEEEE
T ss_pred HHHHHcCCcEEEEEecCCEEEEEEE
Confidence 3333333444445558899999875
No 174
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.53 E-value=2.6e+02 Score=23.58 Aligned_cols=56 Identities=11% Similarity=-0.111 Sum_probs=39.4
Q ss_pred CCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEE
Q 027933 92 GNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLF 152 (216)
Q Consensus 92 ~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~ 152 (216)
++.+++.+.+...+. .++-..-+.+++|+.-+-...|.-.++++|.+ .|+...-+.
T Consensus 301 ~~~~la~~l~~~~g~----~~~yly~gs~~~~~~~~~~~~l~~~~i~~a~~-~G~~~ydf~ 356 (406)
T PF02388_consen 301 DEIPLAGALFIYYGD----EAYYLYGGSDEEYRKFYAPYLLQWEAIKYAKE-KGIKRYDFG 356 (406)
T ss_dssp SEEEEEEEEEEEETT----EEEEEEEEE-CGCGGCTHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred CcceEEEEEEEEECC----EEEEEECccchhhHhcCcchHHHHHHHHHHHH-CCCCEEEee
Confidence 445666665555444 25555778899999998777777789999999 999977764
No 175
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=36.29 E-value=55 Score=21.22 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
+..+.+.|.. =.+++.||+. +||+.....
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeec
Confidence 3455555555 3479999997 999998754
No 176
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.91 E-value=43 Score=21.92 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=20.4
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|. +-.++.+||++ +||+....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeecc
Confidence 3455666554 34479999998 89998754
No 177
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=34.78 E-value=48 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=20.1
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.+.. =.++++||++ +||+....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEe
Confidence 45556665543 3479999998 89997654
No 178
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=34.70 E-value=1.1e+02 Score=23.01 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=37.9
Q ss_pred EEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 116 AVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 116 ~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.+.-.+++|..|+|.+++.. .|++.+.+- ++|+.-+.-.+..|..++.+..
T Consensus 119 ~lg~~~D~R~ygigAqIL~d--------LGI~~irLL--tnnp~K~~~l~~~Gi~vverv~ 169 (193)
T COG0807 119 ALGFPADERDYGIGAQILKD--------LGIKKIRLL--TNNPRKIYGLEGFGINVVERVP 169 (193)
T ss_pred hhcCCchHHHHHHHHHHHHH--------cCCcEEEEe--cCChHHHHHHHhCCceEEEEee
Confidence 46677899999999998863 688887774 4476666667778877776654
No 179
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=34.42 E-value=59 Score=22.68 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.++..+.+.|..-+ +|.+||+. +||+....
T Consensus 16 ~~i~hv~l~v~Dl~-~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 16 RRLLHTMLRVGDLD-KSLDFYTEVLGMKLLRK 46 (150)
T ss_pred ceEEEEEEEecCHH-HHHHHHHHhcCCEEEEE
Confidence 45566666665444 79999986 89998654
No 180
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=33.87 E-value=60 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=20.0
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
+..+.+.|..- .++.+||++ +||+.....
T Consensus 7 l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 7 LDHCLLTGEDI-AETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eCEEEEecCCH-HHHHHHHHHhcCCEEEEEE
Confidence 44565655543 478999987 999976553
No 181
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=33.31 E-value=1.4e+02 Score=22.30 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=33.0
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
.+++|.-|+|.++|. + .|++.+.|- +.|+.-+.-...+|.++++..
T Consensus 121 ~~d~R~yGiGAQIL~-------d-LGV~~~rLL--tn~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADILE-------D-LGVKKVRLL--TNNPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHHH-------H-cCCCEEEEC--CCCHHHHHHHHhCCCEEEEEe
Confidence 456999999999986 3 688887664 445545556667788887654
No 182
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=33.07 E-value=1.5e+02 Score=19.60 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=32.9
Q ss_pred ceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCH
Q 027933 111 HGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNT 158 (216)
Q Consensus 111 ~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~ 158 (216)
.+++..+.|..+-++.|++..+.+.+.+... .+...+..+|+
T Consensus 33 vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d~p------~L~W~~r~~n~ 74 (98)
T cd04263 33 VATLATFTITKSGWLNNVADNIFTAIKKDHP------KLVWTVREDDE 74 (98)
T ss_pred CEEEEEEEEccccccccHHHHHHHHHHhhCC------eeEEEeCCCCC
Confidence 5899999999999999999988887765433 46677777764
No 183
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=32.99 E-value=62 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=19.6
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+..+.+.|..- .++.+||.+ +||+....
T Consensus 3 i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 3 IGAVTLRVADL-ERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEEECCH-HHHHHHHHhccCcEEEEc
Confidence 34555655443 368999986 89998765
No 184
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.53 E-value=1.6e+02 Score=20.00 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred ccCCHHHH-HHHHHHHHHhccCCceEEEEEEec-----------CCHHHHHHHHhCCCeEEEE
Q 027933 124 RRQQLAKK-LMNLLEDISDKIDKAYFVDLFVRA-----------SNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 124 rg~GiG~~-ll~~~~~~a~~~~g~~~i~l~v~~-----------~N~~a~~~y~k~GF~~~~~ 174 (216)
.+.-++.+ ..+.+.+.+.+ +|++.+.+.+.- ..+.|++-..+.|+++...
T Consensus 42 k~TpyAAq~aa~~~~~~~~~-~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I 103 (114)
T TIGR03628 42 ESSPYAAMQAAGRAAEKAKE-RGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 103 (114)
T ss_pred cCCHHHHHHHHHHHHHHHHH-cCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 33445554 56778888888 999999888755 4467899999999998654
No 185
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=32.44 E-value=49 Score=21.94 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=18.5
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+..+.+.|..-. +|.+||+. +||+....
T Consensus 3 l~~v~l~v~Dl~-~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDLD-AWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCHH-HHHHHHHhccCceeccC
Confidence 344555555433 68999977 89987543
No 186
>PLN02300 lactoylglutathione lyase
Probab=31.97 E-value=55 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHh-ccCCceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 135 LLEDISD-KIDKAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 135 ~~~~~a~-~~~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.+++|.+ ...++..+.+.|..- .++++||++ +||+....
T Consensus 13 ~~~~~~~~~i~~l~Hv~l~V~Dl-e~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 13 DLLEWPKKDKRRMLHVVYRVGDL-DRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhcCCccccceEEEEEEEeCCH-HHHHHHHHHhcCCEEEEe
Confidence 3444542 223455666655543 379999986 89998754
No 187
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=31.74 E-value=1.5e+02 Score=22.15 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=33.8
Q ss_pred EChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 119 VSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 119 V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..+++|.-|+|.+++. . .|++.+.+ .+.|+.-+.-..-+|.++++..
T Consensus 123 ~~~d~R~yGiGAQIL~-------d-LGV~~mrL--Ltn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 123 FAADERDYTLAADMLK-------A-LGVKKVRL--LTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred CCccceehhHHHHHHH-------H-cCCCEEEE--CCCCHHHHHHHHhCCCEEEEEe
Confidence 3557999999999886 3 68888766 4445545555667888887654
No 188
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=31.42 E-value=60 Score=23.11 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=19.6
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
+..+.+.|..- .++.+||++ +||+.....
T Consensus 2 l~HI~i~V~Dl-e~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 2 LHGVTLTVRDP-EATAAFLTDVLGFREVGEE 31 (157)
T ss_pred cccEEEEeCCH-HHHHHHHHHhcCCEEEeee
Confidence 44555555443 479999976 799987654
No 189
>PF03411 Peptidase_M74: Penicillin-insensitive murein endopeptidase; InterPro: IPR005073 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to MEROPS peptidase family M74 (murein endopeptidase family, clan MD). The type example is murein endopeptidase from Escherichia coli (MepA). The entry represents a family of penicillin-insensitive murein endopeptidases involved in the removal of murein from the sacculus by cleaving the peptide bonds between neighbouring strands in mature murein. The crystal structure of MepA has been determined revealing similarities to the D-Ala-D-Ala carboxypeptidases in MEROPS peptidase family M15 []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0030288 outer membrane-bounded periplasmic space; PDB: 1U10_F 1TZP_A.
Probab=31.34 E-value=19 Score=27.86 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=4.4
Q ss_pred CCCcccCCc
Q 027933 3 HHRSCKNGL 11 (216)
Q Consensus 3 ~~~~~~~~~ 11 (216)
=|+|||+||
T Consensus 75 gH~SHQ~GL 83 (240)
T PF03411_consen 75 GHASHQSGL 83 (240)
T ss_dssp S-S--TTS-
T ss_pred CccccccCc
Confidence 489999999
No 190
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=31.19 E-value=69 Score=20.73 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.7
Q ss_pred eEEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 147 YFVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 147 ~~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
..+.+.+.. -.++++||++ +||+.....
T Consensus 4 ~hv~l~v~d-~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 4 AYAELEVPD-LERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred eEEEEecCC-HHHHHHHHHhccCcEEEeec
Confidence 344443332 3468999999 999987653
No 191
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=31.05 E-value=71 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=19.8
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|.. =.++.+||++ +||+....
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEee
Confidence 34455555543 3479999987 69998765
No 192
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=31.04 E-value=66 Score=22.88 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYR 173 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~ 173 (216)
++..+.+.|..- .+|++||++ +||+...
T Consensus 3 ~l~Hv~l~V~Dl-~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDV-DAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCH-HHHHHHHHhccCCEEEE
Confidence 345566655443 479999988 8998764
No 193
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=30.86 E-value=64 Score=20.54 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.0
Q ss_pred HHHHHHHHh-CCCeEEEEE
Q 027933 158 TPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 158 ~~a~~~y~k-~GF~~~~~~ 175 (216)
..+.+||++ +||+.....
T Consensus 7 ~~a~~FY~~~lg~~~~~~~ 25 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDD 25 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 468999998 999998743
No 194
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=30.66 E-value=1.2e+02 Score=25.45 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=36.9
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
+...+++|.-|+|.++++ . .|++.+.| .+.|+.-+.-.+.+|.++++...
T Consensus 307 lg~~~D~RdygigAqIL~-------d-LGV~~irL--LTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 307 LGFKEDERDYAAAFQILK-------A-LGIEKVRL--LTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred cCCCccceeeeHHHHHHH-------H-cCCCEEEE--CCCCHHHHHHHHhCCCEEEEEec
Confidence 345677888888888876 3 67888766 45577667777899999987753
No 195
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=30.44 E-value=2.2e+02 Score=20.81 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=46.2
Q ss_pred cCCcEEEEEEEEEecCCCccceEEEEEEEChhcc----cCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHH---
Q 027933 91 PGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYR----RQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKM--- 163 (216)
Q Consensus 91 ~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~r----g~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~--- 163 (216)
.+++.++.+-+..... ....|+.-+-+.|.++ |.++-..|++.+-+++.. -..++++-..+.+....+
T Consensus 25 ~~~~~l~~~kvF~GR~--yY~pW~EiFni~p~~~~~~~~s~~E~~l~~~~~~~l~p---g~~lfVeY~~D~eT~~~L~~G 99 (170)
T PF06557_consen 25 LGGRHLCHVKVFFGRP--YYRPWAEIFNINPWLRVVFFGSPLEDELYKLFSRYLEP---GGRLFVEYVEDRETRRQLQRG 99 (170)
T ss_dssp ETTEEEEEEEEE--BT--TB--EEEEE---GGGHHHHTTSHHHHHHHHHHHTT-------SEEEEE-TT-HHHHHHHHTT
T ss_pred ECCeeEEEEEEecCCC--CCcchheeecccchhcccccCChHHHHHHHHHHHHhhh---cCeEEEEEecCHHHHHHHHcC
Confidence 4788999987775443 3346787889999999 888888888777766643 234666655555544444
Q ss_pred -----------HHhCCCeEEEEE
Q 027933 164 -----------YEKLGYVIYRRV 175 (216)
Q Consensus 164 -----------y~k~GF~~~~~~ 175 (216)
..++||+.....
T Consensus 100 ~pp~~TrLG~~Ll~~GFtwfKdW 122 (170)
T PF06557_consen 100 VPPAETRLGFSLLKAGFTWFKDW 122 (170)
T ss_dssp --GGGSHHHHHHHTTT--EEEEE
T ss_pred CCcccchhHHHHHhCCcEEEeee
Confidence 478999988764
No 196
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=30.09 E-value=54 Score=24.84 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEE
Q 027933 126 QQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYR 173 (216)
Q Consensus 126 ~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~ 173 (216)
+|||.+-++.++-+|.+ +. +...+.-+.+++.|+|+....
T Consensus 121 KGIG~ETaDsILlYa~~-rp-------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALD-RP-------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhc-Cc-------ccchhHHHHHHHHHhcccccc
Confidence 69999999999999987 32 223444689999999998764
No 197
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.97 E-value=67 Score=21.02 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=17.8
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.+.+.|.. =.++++||++ +||+....
T Consensus 4 Hi~l~v~d-l~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 4 HVAIWTKD-LERMKAFYVTYFGATSNEK 30 (125)
T ss_pred EEEEEecC-HHHHHHHHHHHhCCEeece
Confidence 45555554 3479999988 79987543
No 198
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=29.48 E-value=38 Score=23.43 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCeEEE
Q 027933 158 TPAIKMYEKLGYVIYR 173 (216)
Q Consensus 158 ~~a~~~y~k~GF~~~~ 173 (216)
.++.+||.++||+.-.
T Consensus 15 ~~S~~Fy~alGfk~Np 30 (133)
T COG3607 15 EASKAFYTALGFKFNP 30 (133)
T ss_pred HHHHHHHHHhCcccCC
Confidence 4789999999999754
No 199
>PRK11478 putative lyase; Provisional
Probab=28.78 E-value=52 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=18.6
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYR 173 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~ 173 (216)
++..+.+.|.. =.++.+||.+ +||+...
T Consensus 6 ~i~hv~l~v~D-~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIATD-YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcCC-HHHHHHHHHHHhCCEecc
Confidence 34456565543 3468999976 8999753
No 200
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=28.57 E-value=62 Score=21.27 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=19.5
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|.. =.++.+||.+ +||+....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 34556665543 3369999987 99997643
No 201
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=28.50 E-value=92 Score=20.89 Aligned_cols=26 Identities=31% Similarity=0.668 Sum_probs=17.5
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.+.+.+..- .++.+||.+ +||+....
T Consensus 4 hv~l~v~D~-~~s~~FY~~~lG~~~~~~ 30 (134)
T cd08348 4 HVVLYVRDL-EAMVRFYRDVLGFTVTDR 30 (134)
T ss_pred EEEEEecCH-HHHHHHHHHhcCCEEEee
Confidence 444444433 368999987 99997654
No 202
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=28.45 E-value=85 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=21.7
Q ss_pred CCceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.++..+.+.|.. =.++++||++ +||+....
T Consensus 8 ~~l~Hi~l~v~D-l~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 8 QGLGHVVLATPD-PDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred CccCEEEEEeCC-HHHHHHHHHHccCCEEEEE
Confidence 456677776654 4478999987 99997654
No 203
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.42 E-value=81 Score=20.89 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.0
Q ss_pred ceEEEEEEecCCHHHHHHHHhC----CCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEKL----GYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k~----GF~~~~~ 174 (216)
+..+.+.|.. =.++.+||++. ||+....
T Consensus 2 i~Hv~i~v~d-~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 2 IHHVELTVRD-LERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CceEEEEeCC-HHHHHHHHHHHHhhcCCEEEEe
Confidence 3455555543 34689999885 9998765
No 204
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=28.36 E-value=2.1e+02 Score=20.02 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=36.9
Q ss_pred cCCHHHH-HHHHHHHHHhccCCceEEEEEEec-----------CCHHHHHHHHhCCCeEEEE
Q 027933 125 RQQLAKK-LMNLLEDISDKIDKAYFVDLFVRA-----------SNTPAIKMYEKLGYVIYRR 174 (216)
Q Consensus 125 g~GiG~~-ll~~~~~~a~~~~g~~~i~l~v~~-----------~N~~a~~~y~k~GF~~~~~ 174 (216)
+.-++.+ ..+.+.+.+.+ .|++.+.+.+.- ..+.|++-..+.|+++...
T Consensus 50 ~TpyAAq~aae~~~~~~~~-~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I 110 (132)
T PRK09607 50 SSPYAAMQAAEKAAEDAKE-KGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 110 (132)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEE
Confidence 3445554 56677888888 999999888765 4457899999999997643
No 205
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.18 E-value=90 Score=21.15 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=20.6
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|.. -.++++||++ +||.....
T Consensus 4 ~i~hv~l~V~d-l~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKD-LNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCC-HHHHHHHHHHHhCCeeEEe
Confidence 56667676643 4479999987 99987543
No 206
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.12 E-value=1.2e+02 Score=20.44 Aligned_cols=80 Identities=15% Similarity=0.020 Sum_probs=44.5
Q ss_pred eEEEEeccCCcEEEEEEEEEecCCCccceEEEEEEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHH
Q 027933 84 YFHVAEGPGNRIMGYIMGKVEGQGESWHGHVTAVTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKM 163 (216)
Q Consensus 84 ~~~v~~~~~g~lvG~~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~ 163 (216)
.++.+....+++-|.-.+....+. .....+..+++.|+ .+-.+++.+.+ .|++.+.+.....+..+.++
T Consensus 29 ~v~~Vnp~~~~i~G~~~y~sl~e~-p~~iDlavv~~~~~---------~~~~~v~~~~~-~g~~~v~~~~g~~~~~~~~~ 97 (116)
T PF13380_consen 29 EVYPVNPKGGEILGIKCYPSLAEI-PEPIDLAVVCVPPD---------KVPEIVDEAAA-LGVKAVWLQPGAESEELIEA 97 (116)
T ss_dssp EEEEESTTCSEETTEE-BSSGGGC-SST-SEEEE-S-HH---------HHHHHHHHHHH-HT-SEEEE-TTS--HHHHHH
T ss_pred EEEEECCCceEECcEEeeccccCC-CCCCCEEEEEcCHH---------HHHHHHHHHHH-cCCCEEEEEcchHHHHHHHH
Confidence 344444345666666555443321 12344555666655 33444455555 68889988888889999999
Q ss_pred HHhCCCeEEEE
Q 027933 164 YEKLGYVIYRR 174 (216)
Q Consensus 164 y~k~GF~~~~~ 174 (216)
.++.|.+.++.
T Consensus 98 a~~~gi~vigp 108 (116)
T PF13380_consen 98 AREAGIRVIGP 108 (116)
T ss_dssp HHHTT-EEEES
T ss_pred HHHcCCEEEeC
Confidence 99999998853
No 207
>PRK09429 mepA penicillin-insensitive murein endopeptidase; Reviewed
Probab=27.03 E-value=27 Score=27.65 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=8.2
Q ss_pred CCCcccCCc
Q 027933 3 HHRSCKNGL 11 (216)
Q Consensus 3 ~~~~~~~~~ 11 (216)
=|+|||||+
T Consensus 109 gH~SHQ~Gl 117 (275)
T PRK09429 109 GHASHQTGL 117 (275)
T ss_pred CCccccccc
Confidence 489999999
No 208
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=26.68 E-value=4.1e+02 Score=22.73 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=46.1
Q ss_pred hcccCCHHHHHHHHHHHHHhccCCceEEEEE---------------EecCCHHHHHHHHhCCCeEEEEEeccccCccceE
Q 027933 122 EYRRQQLAKKLMNLLEDISDKIDKAYFVDLF---------------VRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGL 186 (216)
Q Consensus 122 ~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~---------------v~~~N~~a~~~y~k~GF~~~~~~~~~~~~~~~~~ 186 (216)
+|-++.+-..+++.+.++++. ..+-.+.+. ....|.+.++.+..+|++..+-...+.......+
T Consensus 78 dy~~~~l~~~~~k~l~~y~k~-~~~l~i~idP~l~~~~~~~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~~iqp~~ 156 (418)
T COG2348 78 DYSNQELLDYFIKELKKYAKS-KRALFIKIDPYLVYQQFDLGGEIIENYNNLAIIKLLKDLGYKHSGFTKGLDDSIQPRW 156 (418)
T ss_pred cccchHHHHHHHHHHHHHHhh-ccceEEEeccchhhhcccCCCccccCcchHHHHHHHHHhhhhhcCcccccCcccccch
Confidence 888888878888888888876 333333221 1155678899999999999887655544334444
Q ss_pred EEEeccc
Q 027933 187 DMRKALS 193 (216)
Q Consensus 187 ~m~k~L~ 193 (216)
....++.
T Consensus 157 ~~~ldl~ 163 (418)
T COG2348 157 HSVLDLK 163 (418)
T ss_pred hhhcccc
Confidence 4444443
No 209
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=26.01 E-value=1.3e+02 Score=19.42 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=17.6
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.+.+.+.. =.++.+||.+ +||+....
T Consensus 3 hv~i~v~d-~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 3 HTMLRVKD-LEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred eEEEEecC-cHHHHHHHHhccCCeEEEE
Confidence 34454433 3478999987 69998764
No 210
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=25.90 E-value=32 Score=20.65 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=10.1
Q ss_pred EChhcccCCHHHHH
Q 027933 119 VSPEYRRQQLAKKL 132 (216)
Q Consensus 119 V~p~~rg~GiG~~l 132 (216)
=+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 36888888887654
No 211
>PRK10291 glyoxalase I; Provisional
Probab=25.88 E-value=82 Score=21.12 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.3
Q ss_pred CHHHHHHHHh-CCCeEEEE
Q 027933 157 NTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 157 N~~a~~~y~k-~GF~~~~~ 174 (216)
=++|++||++ +||+....
T Consensus 7 le~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 3479999977 99998654
No 212
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=25.71 E-value=1.6e+02 Score=26.02 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.|++.+.| .+.|+.-+.-.+.+|.+++++..
T Consensus 349 LGI~kIrL--LTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 349 LGIKRLRL--ITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred cCCCEEEE--CCCCHHHHHHHHhCCCEEEEEec
Confidence 68888766 45677777778899999987764
No 213
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=25.59 E-value=3e+02 Score=20.77 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHh--cCCCeEEEEeccCCcEEEEEEEEEecCC-CccceEEEE-EEEChhcccCCHHHHHHHHHHHHHhccCCceE
Q 027933 73 FYMTYLA--RWPDYFHVAEGPGNRIMGYIMGKVEGQG-ESWHGHVTA-VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYF 148 (216)
Q Consensus 73 ~~~~~~~--~~~~~~~v~~~~~g~lvG~~~~~~~~~~-~~~~~~i~~-~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~ 148 (216)
+|...+. ......+++.+.+|++.||+.+...... ......+.. ++.+++-+ +.|++++.++. ..+..
T Consensus 12 ~w~~~~~~~~~~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A~-----~aLl~fl~~h~---~~~~~ 83 (218)
T PF13530_consen 12 WWRRLLREREKDRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEAY-----RALLAFLASHR---DQVDE 83 (218)
T ss_dssp HHHHHCHTTCCGSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHHH-----HHHHHHHHTCC---TTESE
T ss_pred HHHHHhhcccCCceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHHH-----HHHHHHHHhhh---CcceE
Confidence 3444442 2334455555589999999999987621 111344443 56666532 34566554432 34556
Q ss_pred EEEEE
Q 027933 149 VDLFV 153 (216)
Q Consensus 149 i~l~v 153 (216)
+.+..
T Consensus 84 v~~~~ 88 (218)
T PF13530_consen 84 VEWNR 88 (218)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66643
No 214
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.18 E-value=1e+02 Score=20.85 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=19.1
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+..+.+.|.. =.++.+||++ +||+....
T Consensus 4 l~hi~l~v~d-l~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 4 LGHVVLFVPD-VEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eeEEEEEcCC-HHHHHHHHHHhcCCEEEEE
Confidence 4455565543 3479999977 89988654
No 215
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.83 E-value=77 Score=20.35 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=14.7
Q ss_pred HHHHHHHHh-CCCeEEEEE
Q 027933 158 TPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 158 ~~a~~~y~k-~GF~~~~~~ 175 (216)
.++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 468999998 999987654
No 216
>PRK06724 hypothetical protein; Provisional
Probab=24.56 E-value=1.1e+02 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCceEEEEEEecCCHHHHHHHHh----CCCeEEE
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEK----LGYVIYR 173 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k----~GF~~~~ 173 (216)
.++..+.+.|..-+ +|.+||++ +||+...
T Consensus 6 ~~i~Hv~l~V~Dle-~s~~FY~~vlg~lg~~~~~ 38 (128)
T PRK06724 6 AGIHHIEFWVANLE-ESISFYDMLFSIIGWRKLN 38 (128)
T ss_pred cccCEEEEEeCCHH-HHHHHHHHHHhhCCcEEee
Confidence 45677888776544 78999998 6888753
No 217
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=24.55 E-value=70 Score=20.68 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHh-CCCeEEE
Q 027933 158 TPAIKMYEK-LGYVIYR 173 (216)
Q Consensus 158 ~~a~~~y~k-~GF~~~~ 173 (216)
..+.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 468999997 9999763
No 218
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=24.26 E-value=85 Score=20.03 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=14.8
Q ss_pred HHHHHHHHh-CCCeEEEEE
Q 027933 158 TPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 158 ~~a~~~y~k-~GF~~~~~~ 175 (216)
.++.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 479999999 999987654
No 219
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.08 E-value=1e+02 Score=20.17 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=13.5
Q ss_pred CHHHHHHHHh-CCCeEEE
Q 027933 157 NTPAIKMYEK-LGYVIYR 173 (216)
Q Consensus 157 N~~a~~~y~k-~GF~~~~ 173 (216)
-+++.+||++ +||+...
T Consensus 11 ~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 11 VEKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHHhhCCeEEe
Confidence 3479999988 8998754
No 220
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=24.00 E-value=61 Score=21.33 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
.+.+.|.. =.++.+||.+ +||+....
T Consensus 3 hv~l~v~d-~~~~~~fy~~~lG~~~~~~ 29 (128)
T cd07249 3 HIGIAVPD-LEAAIKFYRDVLGVGPWEE 29 (128)
T ss_pred EEEEEeCC-HHHHHHHHHHhhCCCCccc
Confidence 45565543 3478999998 99998654
No 221
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=23.69 E-value=1.2e+02 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.7
Q ss_pred ceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 146 AYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 146 ~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
+..+.+.|.. =..+.+||++ +||+....
T Consensus 2 i~hv~l~v~d-~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSD-LERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECC-HHHHHHHHHHhcCCEEEEe
Confidence 3445555433 3468999987 99998654
No 222
>PF11928 DUF3446: Domain of unknown function (DUF3446); InterPro: IPR021849 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 80 to 99 amino acids in length. This domain is found associated with PF00096 from PFAM. This domain has a single completely conserved residue P that may be functionally important.
Probab=23.68 E-value=29 Score=22.12 Aligned_cols=11 Identities=45% Similarity=1.250 Sum_probs=8.6
Q ss_pred cccCCcceeeeE
Q 027933 6 SCKNGLWKPIGV 17 (216)
Q Consensus 6 ~~~~~~~~~~~~ 17 (216)
+|.|++| +++|
T Consensus 10 ~~~~s~W-~E~i 20 (84)
T PF11928_consen 10 NCSNSLW-PEPI 20 (84)
T ss_pred CCCCCcC-cchh
Confidence 6899999 6654
No 223
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=23.59 E-value=1.3e+02 Score=20.51 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=19.9
Q ss_pred CceEEEEEEecCCHHHHHHHHh-CCCeEEEE
Q 027933 145 KAYFVDLFVRASNTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 145 g~~~i~l~v~~~N~~a~~~y~k-~GF~~~~~ 174 (216)
++..+.+.|..- .++.+||++ +||+....
T Consensus 4 ~i~hi~L~v~Dl-~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 4 GINHICFSVSNL-EKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred cEEEEEEEecCH-HHHHHHHHhccCCEEEee
Confidence 455666655543 379999965 99998643
No 224
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.52 E-value=1.3e+02 Score=19.63 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.0
Q ss_pred EEEecCC-HHHHHHHHh-CCCeEEEE
Q 027933 151 LFVRASN-TPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 151 l~v~~~N-~~a~~~y~k-~GF~~~~~ 174 (216)
+.....| .++.+||.+ +||+....
T Consensus 5 v~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 5 VALNVDDLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEeCCHHHHHHHHHHHhCCeEecc
Confidence 3333344 579999987 69987544
No 225
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=23.48 E-value=1.6e+02 Score=21.91 Aligned_cols=44 Identities=7% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEEecCC--HHHHHHHHhCCCeEEE
Q 027933 129 AKKLMNLLEDISDKIDKAYFVDLFVRASN--TPAIKMYEKLGYVIYR 173 (216)
Q Consensus 129 G~~ll~~~~~~a~~~~g~~~i~l~v~~~N--~~a~~~y~k~GF~~~~ 173 (216)
--++++.+++.+++ .|...+.+.-.... ....+.+++.||....
T Consensus 21 ~P~vv~avv~~l~~-~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~ 66 (206)
T PF04015_consen 21 HPEVVRAVVEMLKE-AGAKEIIIAESPGSGAADTREVFKRSGYEEIA 66 (206)
T ss_pred CHHHHHHHHHHHHH-cCCCceEEEeCCCcchHhHHHHHHHcchhhHH
Confidence 34789999999998 88886666544433 4688899999998763
No 226
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=22.82 E-value=1.4e+02 Score=20.13 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=19.1
Q ss_pred EEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 150 DLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 150 ~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
+|.+..+-..|++||++ +||++....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 35554555679999986 899988665
No 227
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=21.97 E-value=2.2e+02 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=22.6
Q ss_pred CCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 144 DKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 144 ~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
.|++.+.| .+.|+.-+.-.+.+|.++++...
T Consensus 379 LGI~~irL--LTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 379 LGVRTMRL--MTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred cCCCEEEE--CCCCHHHHHHHhhCCCEEEEEec
Confidence 67777766 45576667777889999987653
No 228
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.81 E-value=2.4e+02 Score=22.49 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhccCCceEEEEEEecCC-----------HHHHHHHHhCCCeEEE
Q 027933 130 KKLMNLLEDISDKIDKAYFVDLFVRASN-----------TPAIKMYEKLGYVIYR 173 (216)
Q Consensus 130 ~~ll~~~~~~a~~~~g~~~i~l~v~~~N-----------~~a~~~y~k~GF~~~~ 173 (216)
..-|..+++++++ .|+. |.|.+.... ..+.+.|++.|-+-++
T Consensus 72 ~~dl~elv~Ya~~-KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvK 124 (273)
T PF10566_consen 72 DFDLPELVDYAKE-KGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVK 124 (273)
T ss_dssp T--HHHHHHHHHH-TT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEE
T ss_pred ccCHHHHHHHHHH-cCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEe
Confidence 3456666666666 5655 334444433 4556666666655443
No 229
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.74 E-value=1.2e+02 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.0
Q ss_pred CHHHHHHHHh-CCCeEEEE
Q 027933 157 NTPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 157 N~~a~~~y~k-~GF~~~~~ 174 (216)
-.+|++||++ +||+....
T Consensus 10 l~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 10 LEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHHhcCCEEeec
Confidence 3478999986 89998654
No 230
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=21.61 E-value=1.8e+02 Score=21.05 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=32.8
Q ss_pred cCCHHHHH-HHHHHHHHhccCCceEEEEE--EecCCH--HHHHHHHhCCCeEEEEE
Q 027933 125 RQQLAKKL-MNLLEDISDKIDKAYFVDLF--VRASNT--PAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 125 g~GiG~~l-l~~~~~~a~~~~g~~~i~l~--v~~~N~--~a~~~y~k~GF~~~~~~ 175 (216)
+.++|+.- ++.++++++. .|++++-+- +.-.++ ...++++..||++....
T Consensus 34 ~~~Y~~~tRveEiieFak~-mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 34 GEGYGKLTRVEEIIEFAKR-MGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred hhcccccchHHHHHHHHHH-cCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34444422 6788899999 999988763 222222 23567789999998764
No 231
>PRK08815 GTP cyclohydrolase; Provisional
Probab=21.48 E-value=2.3e+02 Score=23.74 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=35.9
Q ss_pred EEEChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 117 VTVSPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 117 ~~V~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
+...++.|.-|+|.++++ . .|++++.| .+.|+.-+.-.+.+|.++++...
T Consensus 292 lg~~~D~RdygigAQIL~-------d-LGV~kirL--LTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 292 LGFGPDERRYGSAVAMLR-------G-LGITRVRL--LTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred cCCCccceeeeHHHHHHH-------H-cCCCeEEE--CCCCHHHHHHHHhCCCEEEEEec
Confidence 344667888899888876 3 68888777 44466556667789999987653
No 232
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=20.98 E-value=3e+02 Score=20.49 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=31.5
Q ss_pred ChhcccCCHHHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEE
Q 027933 120 SPEYRRQQLAKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRV 175 (216)
Q Consensus 120 ~p~~rg~GiG~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~ 175 (216)
..++|.-|+|.+++.. .|++.+.+- +.|+.-..-..-+|.++++..
T Consensus 123 ~~d~R~yGiGAQIL~d--------LGv~~mrLL--s~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 123 PADARDYGLAAQILRD--------LGIKSVRLL--TNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred CccccchHHHHHHHHH--------cCCCeEEEC--CCCHHHHHHHHhCCCEEEEEe
Confidence 5569999999999873 677777764 335444445556777777554
No 233
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=20.92 E-value=2.4e+02 Score=20.87 Aligned_cols=46 Identities=11% Similarity=0.072 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEe
Q 027933 129 AKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVL 176 (216)
Q Consensus 129 G~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~ 176 (216)
|+.|+.++++.+.. .+..+.+-+..+-+.-..+.++.|++++.+..
T Consensus 26 GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG 71 (177)
T COG2266 26 GKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPG 71 (177)
T ss_pred CccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCC
Confidence 56788888887765 67788888888888888888999998887654
No 234
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=20.78 E-value=1.2e+02 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=13.4
Q ss_pred HHHHHHHHh-CCCeEEEE
Q 027933 158 TPAIKMYEK-LGYVIYRR 174 (216)
Q Consensus 158 ~~a~~~y~k-~GF~~~~~ 174 (216)
.++++||++ +||+....
T Consensus 11 ~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 11 AATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 368999987 89997644
No 235
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=20.76 E-value=1.5e+02 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEEEecCCHHHHHHHHh-CCCeEEEEE
Q 027933 148 FVDLFVRASNTPAIKMYEK-LGYVIYRRV 175 (216)
Q Consensus 148 ~i~l~v~~~N~~a~~~y~k-~GF~~~~~~ 175 (216)
.+.+.|.. =..|++||++ +||+...+.
T Consensus 30 Ht~i~V~D-le~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 30 QTMFRIKD-PKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred EEEEeeCC-HHHHHHHHHhhcCCEEEEEE
Confidence 34444443 3479999975 899987664
No 236
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.10 E-value=2.7e+02 Score=21.65 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEEecCCHHHHHHHHhCCCeEEEEEeccc
Q 027933 129 AKKLMNLLEDISDKIDKAYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYY 179 (216)
Q Consensus 129 G~~ll~~~~~~a~~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~~~~~~~~ 179 (216)
|+-|+.++.+.+.+ .+..++. |.++++.-...-+++|++.+-+..+.-
T Consensus 27 GkpmI~rV~e~a~~-s~~~rvv--VATDde~I~~av~~~G~~avmT~~~h~ 74 (247)
T COG1212 27 GKPMIVRVAERALK-SGADRVV--VATDDERIAEAVQAFGGEAVMTSKDHQ 74 (247)
T ss_pred CchHHHHHHHHHHH-cCCCeEE--EEcCCHHHHHHHHHhCCEEEecCCCCC
Confidence 56789999999988 7888754 466777778888999999887665443
Done!