BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027936
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 21 KKDDGVVTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPY 80
KK + TV +K+++ CEGC K+++ + KGV +VT++ VTV G +D ++V
Sbjct: 20 KKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVAR 79
Query: 81 LKEKLKRNVEVVP 93
+ + + VE+ P
Sbjct: 80 MSHRTGKKVELWP 92
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 33 IRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPYLK 82
+ +HCE C + I+K + G+ NVT D +L+ V+G ++ LK
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALK 64
>sp|Q01477|UBP3_YEAST Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP3 PE=1 SV=1
Length = 912
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 149 MEYYGYPYPPAPSYWYDNHVYGQSYPMENQHQVVYANQGYPPQMHHAPP 197
++ YGY P Y Y + S+ M NQ+Q +Y G P HH PP
Sbjct: 38 LQMYGYTQAP---YLYPTQIPAYSFNMVNQNQPIYHQSGSP---HHLPP 80
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 48 IYKTKGVDNVTID-GGKDLVTVKGTMDVKELVPYLKEKL-----KRNVEVVPAKKDDGEK 101
++ + D VTI G + V GT+ +E + YLK+++ K NV++ D+ +K
Sbjct: 473 VFNPRNCDEVTIGIKGLKVAKVLGTL-AEEQLSYLKKEISTQIKKDNVKIEELSDDNMDK 531
Query: 102 KENKDADKGGDKKAKEAAPATDKGGEKKEKE 132
+ ++D+ DK++++ DK ++ E
Sbjct: 532 ETMPESDEKADKESEDTKNDIDKNNDENANE 562
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 GN=N PE=3 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 50 KTKGVDNVTIDGGKDLVTVKGTMDVKE--LVPYLKEKLKRNVEVV 92
+T GV V IDG K T G E LVP K KL NVE+V
Sbjct: 93 RTDGVFWVAIDGAKTQPTGLGVRKSSEKPLVPKFKNKLPNNVEIV 137
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 95 KKDDGEKKENKDADKGGDKKAKEAAPATDKGGEKKEKEAAAAGG 138
K+ DG KK K + G K+AKE TD K ++A+ G
Sbjct: 146 KQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKEQG 189
>sp|Q0SMZ0|DNAK_BORAP Chaperone protein DnaK OS=Borrelia afzelii (strain PKo) GN=dnaK
PE=3 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADKGGDKKAKE-----AAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K + K A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
>sp|Q661A3|DNAK_BORGA Chaperone protein DnaK OS=Borrelia garinii (strain PBi) GN=dnaK
PE=3 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADKGGDKKAKE-----AAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K + K A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
>sp|B7J282|DNAK_BORBZ Chaperone protein DnaK OS=Borrelia burgdorferi (strain ZS7) GN=dnaK
PE=2 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADKGGDKKAKE-----AAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K + K A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
>sp|P0C922|DNAK_BORBU Chaperone protein DnaK OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=dnaK PE=2 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADKGGDKKAKE-----AAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K + K A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 29 VVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELV 78
+V + + C+ C+ + + G+ ID +LVT +G++ E+V
Sbjct: 7 IVFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIV 56
>sp|Q9C1A4|PACC_TRIRU pH-response transcription factor pacC/RIM101 OS=Trichophyton rubrum
GN=pacC PE=3 SV=2
Length = 758
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 68 VKGTMDVKELVPYLKEKLKRNVEVVPAKKDDGEKKENKDADKGGDKKAKEAAPATDKGGE 127
V+ ++ L Y+ E+L V K+DD +K+E D DK + E+A A+D
Sbjct: 615 VENVRLLQRLRDYVLERLNNGDYVDEDKQDDSDKEE----DAKSDKASPESASASD---- 666
Query: 128 KKEKEAAAAGGGDGGKVEVHKME 150
AA G G+ +++H ME
Sbjct: 667 ------AATGAGEYPSIKMHGME 683
>sp|O32220|COPA_BACSU Copper-exporting P-type ATPase A OS=Bacillus subtilis (strain 168)
GN=copA PE=1 SV=2
Length = 802
Score = 30.8 bits (68), Expect = 8.2, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 35 LHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVK------GTMDVKELVPYL--KEKLK 86
+ C C ++I+K + K +GV N ++ + VTV+ D+KE V L K KLK
Sbjct: 82 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 141
Query: 87 RNVEVVPAKKDDGEKKE 103
+ A K E+K+
Sbjct: 142 GEQDSEAAAKKKEERKQ 158
>sp|B5RM75|DNAK_BORDL Chaperone protein DnaK OS=Borrelia duttonii (strain Ly) GN=dnaK
PE=3 SV=1
Length = 632
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADK--GGDKKA---KEAAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K G D K + A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
>sp|B5RPM1|DNAK_BORRA Chaperone protein DnaK OS=Borrelia recurrentis (strain A1) GN=dnaK
PE=3 SV=1
Length = 632
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 80 YLKEKLKRNVEVVPAKKDDGEKKENKDADK--GGDKKA---KEAAPATDKGGEKKEKEAA 134
YL EK+ V VPA +D +++ KDA K G D K + A A G EKK +E
Sbjct: 130 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIVNEPTAAALAYGIEKKHEEIV 189
Query: 135 AAGGGDGGKVEVHKMEYYGYPYPPAPSYWYDNHVYGQSY 173
A GG ++ +E G S D H+ G ++
Sbjct: 190 AVYDLGGGTFDISILE-LGDGVFEVKSTNGDTHLGGDNF 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,453,959
Number of Sequences: 539616
Number of extensions: 4900645
Number of successful extensions: 21467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 19739
Number of HSP's gapped (non-prelim): 1603
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)