BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027937
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBB|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase (Pterin Carbinolamine Dehydratase) From
Geobacillus Kaustophilus Hta426
Length = 101
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 111 MSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLH 170
++ ++ + LL+K GW+L +E +K ++ +D+ G+E + RI ++E A H P +
Sbjct: 3 LTEEEVQALLEKADGWKLADERWIVKK---YRFQDYLQGIEFVRRIAAISENANHHPFIS 59
Query: 171 LEQP-NQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
++ V+ W + GL+ DF +A + D++
Sbjct: 60 IDYKLITVKLSSWRAK--GLTKLDFDLAKQYDEV 91
>pdb|2V6U|A Chain A, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6U|B Chain B, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
Length = 104
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 118 KLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQV 177
+L K V W L +G L ++ ++ DF ++R+ + H PN + N V
Sbjct: 16 QLHKTVPQWHL--TDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWY-NVYNTV 72
Query: 178 RAELWTSSIGGLSMNDFIVAAKLD 201
EL T GL+ DF +A +D
Sbjct: 73 DVELSTHDAAGLTEKDFALAKFMD 96
>pdb|2V6S|A Chain A, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6S|B Chain B, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6T|A Chain A, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
pdb|2V6T|B Chain B, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
Length = 106
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 118 KLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQV 177
+L K V W L +G L ++ ++ DF ++R+ + H PN + N V
Sbjct: 18 QLHKTVPQWHL--TDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWY-NVYNTV 74
Query: 178 RAELWTSSIGGLSMNDFIVAAKLD 201
EL T GL+ DF +A +D
Sbjct: 75 DVELSTHDAAGLTEKDFALAKFMD 98
>pdb|1USO|A Chain A, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
pdb|1USO|B Chain B, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 145 DFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
+F+ ++ NR+ + E H P L +E +V E WT S GG++ D +A D +
Sbjct: 20 NFREALDFANRVGALAERENHHPRLTVEW-GRVTVEWWTHSAGGVTEKDREMARLTDAL 77
>pdb|1USM|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 145 DFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203
+F+ ++ NR+ + E H P L +E +V E WT S GG++ D +A D +
Sbjct: 20 NFREALDFANRVGALAERENHHPRLTVEW-GRVTVEWWTHSAGGVTEKDREMARLTDAL 77
>pdb|3HXA|A Chain A, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|B Chain B, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|C Chain C, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|D Chain D, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|E Chain E, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|F Chain F, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|G Chain G, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|H Chain H, Crystal Structure Of Dcoh1thr51ser
Length = 104
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 111 MSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
+SA++ +LL + VGW LE + Q + +DF ++R+ E H P
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFKQ--FHFKDFNRAFGFMSRVALQAEKLDHHPE 65
Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTS 206
N+V L T GLS D +A+ ++Q+ S
Sbjct: 66 W-FNVYNKVHITLSTHECAGLSERDINLASFIEQVAVS 102
>pdb|1DCH|A Chain A, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|B Chain B, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|C Chain C, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|D Chain D, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|E Chain E, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|F Chain F, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|G Chain G, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|H Chain H, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCO|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCP|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 111 MSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
+SA++ +LL + VGW LE + Q + +DF + R+ E H P
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFKQ--FHFKDFNRAFGFMTRVALQAEKLDHHPE 65
Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTS 206
N+V L T GLS D +A+ ++Q+ S
Sbjct: 66 W-FNVYNKVHITLSTHECAGLSERDINLASFIEQVAVS 102
>pdb|1DCP|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 111 MSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
+SA++ +LL + VGW LE + Q + +DF + R+ E H P
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFKQ--FHFKDFNRAFGFMTRVALQAEKLDHHPE 65
Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTS 206
N+V L T GLS D +A+ ++Q+ S
Sbjct: 66 W-FNVYNKVHITLSTHECAGLSERDINLASFIEQVAVS 102
>pdb|1F93|A Chain A, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|B Chain B, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|C Chain C, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|D Chain D, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
Length = 104
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 111 MSADDAKKLLK--KVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPN 168
+SA++ +LL + VGW LE + Q + +DF R+ E H P
Sbjct: 8 LSAEERDQLLPNLRAVGWNELEGRDAIFKQ--FHFKDFNRAFGFXTRVALQAEKLDHHPE 65
Query: 169 LHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQIRTS 206
N+V L T GLS D +A+ ++Q+ S
Sbjct: 66 W-FNVYNKVHITLSTHECAGLSERDINLASFIEQVAVS 102
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 67 ELESGFGEKVLGNVDTEHKILIPKLSALSLAEQD 100
+ESGFG ++LG + ILI + A+ A++D
Sbjct: 17 RMESGFGFRILGGDEPGQPILIGAVIAMGSADRD 50
>pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|B Chain B, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|C Chain C, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|D Chain D, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|E Chain E, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|F Chain F, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|G Chain G, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|H Chain H, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
Length = 255
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 56 GDFGA-RDPFPAELESGFGEKVLGNVDTEHKILIPKLSALSLAEQDCSPASPFQTPMSAD 114
G FG RD LE+G G LGN HK + P LS P P++
Sbjct: 41 GGFGMHRDAARGALEAGAGCLTLGNHAWHHKDIYPMLS---------EDTYPIVRPLNYA 91
Query: 115 DAKKLLKKVVGWRLLEEEG 133
D VGWR + G
Sbjct: 92 DPG---TPGVGWRTFDVNG 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,001,931
Number of Sequences: 62578
Number of extensions: 214153
Number of successful extensions: 334
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 14
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)