Query 027937
Match_columns 216
No_of_seqs 151 out of 1081
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2154 Pterin-4a-carbinolamin 100.0 5.6E-32 1.2E-36 210.5 12.3 98 107-207 2-99 (101)
2 PRK00823 phhB pterin-4-alpha-c 100.0 2.6E-31 5.7E-36 204.1 13.2 95 107-204 2-96 (97)
3 PF01329 Pterin_4a: Pterin 4 a 100.0 4.4E-31 9.6E-36 202.0 11.6 94 108-205 2-95 (95)
4 cd00914 PCD_DCoH_subfamily_b P 99.9 3.4E-27 7.4E-32 174.0 10.1 76 125-203 1-76 (76)
5 cd00913 PCD_DCoH_subfamily_a P 99.9 9.6E-27 2.1E-31 171.5 9.6 76 125-203 1-76 (76)
6 cd00488 PCD_DCoH PCD_DCoH: The 99.9 1.6E-26 3.5E-31 169.6 9.1 75 125-203 1-75 (75)
7 KOG4073 Pterin carbinolamine d 99.9 3.8E-25 8.3E-30 171.1 9.2 97 108-207 5-103 (104)
8 PF11987 IF-2: Translation-ini 39.5 5.6 0.00012 31.1 -1.4 29 175-203 42-70 (108)
9 PF13549 ATP-grasp_5: ATP-gras 23.8 73 0.0016 27.9 2.8 54 108-170 146-199 (222)
10 cd03074 PDI_b'_Calsequestrin_C 23.1 1.5E+02 0.0033 24.1 4.2 43 126-171 15-57 (120)
11 KOG0399 Glutamate synthase [Am 20.3 1.7E+02 0.0037 32.9 5.0 43 88-130 616-659 (2142)
No 1
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=99.98 E-value=5.6e-32 Score=210.45 Aligned_cols=98 Identities=30% Similarity=0.596 Sum_probs=92.7
Q ss_pred CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937 107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI 186 (216)
Q Consensus 107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~ 186 (216)
..+.|+++++.++|.+++||.+.++ +..|+|+|+|+||.+|+.|||+||.+||+.||||||++ .|++|+|+||||++
T Consensus 2 ~~~~lt~~~~~~~l~~l~gW~l~~~--~~~l~r~f~FknF~~a~~F~~~vA~~Ae~~~HHPdi~~-~y~~V~vtltTHda 78 (101)
T COG2154 2 RASKLTDEELAELLRALPGWELADD--GAKLTRTFKFKNFKQAIAFVNRVAEIAEKLNHHPDIEV-VYNRVTVTLTTHDA 78 (101)
T ss_pred CccccCHHHHHHHhcCCCCCEEecC--cceEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCeEE-EeeeEEEEEEEccC
Confidence 3578999999999999999999976 67999999999999999999999999999999999999 59999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcC
Q 027937 187 GGLSMNDFIVAAKLDQIRTSD 207 (216)
Q Consensus 187 gGLT~~Df~LAakID~l~~~d 207 (216)
||||++||+||++||+++...
T Consensus 79 gglT~~D~~lA~~id~~~~~~ 99 (101)
T COG2154 79 GGLTDLDFKLAAKIDALAKTE 99 (101)
T ss_pred CCccHHHHHHHHHHHHHHhhh
Confidence 999999999999999998653
No 2
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=99.97 E-value=2.6e-31 Score=204.07 Aligned_cols=95 Identities=29% Similarity=0.559 Sum_probs=90.2
Q ss_pred CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937 107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI 186 (216)
Q Consensus 107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~ 186 (216)
..++|+++|++++|..||||++.++ +.+|+|+|+|+||.++++|+|+|+.+||++||||+|++ +|++|+|+|+||++
T Consensus 2 ~~~~Ls~~ei~~~l~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~ 78 (97)
T PRK00823 2 MAEKLSDEEIAELLPQLPGWTLVGD--RDAIERTFKFKNFNEAFAFMNRVAEIAEEEDHHPDWFN-VYNRVTVTLTTHDA 78 (97)
T ss_pred CCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCCEEE-EcCEEEEEEEeCCC
Confidence 4578999999999999999999765 66899999999999999999999999999999999999 59999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 027937 187 GGLSMNDFIVAAKLDQIR 204 (216)
Q Consensus 187 gGLT~~Df~LAakID~l~ 204 (216)
+|||++||+||++||+++
T Consensus 79 ~glT~~D~~lA~~id~~~ 96 (97)
T PRK00823 79 GGLTENDFILAAKIDALA 96 (97)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999999986
No 3
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=99.97 E-value=4.4e-31 Score=201.97 Aligned_cols=94 Identities=34% Similarity=0.643 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCC
Q 027937 108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIG 187 (216)
Q Consensus 108 ~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~g 187 (216)
+++||++||+++|..+|||++.. +..|+|+|+|+||.+|++|||+|+.+||+++|||+|++ .|++|+|+|+||++|
T Consensus 2 ~~~Ls~~ei~~~L~~l~~W~~~~---~~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~ 77 (95)
T PF01329_consen 2 APPLSEEEIAEALAELPGWKLDG---GGRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISL-GYNRVTVTLTTHDAG 77 (95)
T ss_dssp -SB-THHHHHHHHHTSTTSEEET---SSEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEE-ETTEEEEEE-BTTTT
T ss_pred CCCCCHHHHHHhhhcCcCCEECC---CCcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEe-cCCcEEEEEEeCCCC
Confidence 67999999999999999999986 14999999999999999999999999999999999999 599999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 027937 188 GLSMNDFIVAAKLDQIRT 205 (216)
Q Consensus 188 GLT~~Df~LAakID~l~~ 205 (216)
|||++||+||++||+++.
T Consensus 78 glT~~D~~lA~~id~~~~ 95 (95)
T PF01329_consen 78 GLTEKDFILAARIDDLAE 95 (95)
T ss_dssp BBBHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999873
No 4
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=99.94 E-value=3.4e-27 Score=174.02 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=71.9
Q ss_pred CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
||++..+ +..|+|+|+|++|.+|++|||+|+.+||++||||+|++ +|++|+|+|+||++||||++||+||++||++
T Consensus 1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~-~~~~V~v~l~Thd~~glT~~D~~lA~~id~~ 76 (76)
T cd00914 1 GWTLVDG--RDAIHKSFKFKDFNEAFGFMTRVALEAEKMNHHPEWFN-VYNKVDITLTTHDAGGLTERDIKLAKFIEKA 76 (76)
T ss_pred CCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCEEE-eccEEEEEEEeCCCCCcCHHHHHHHHHHhcC
Confidence 7999864 44899999999999999999999999999999999999 5999999999999999999999999999975
No 5
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=99.94 E-value=9.6e-27 Score=171.48 Aligned_cols=76 Identities=46% Similarity=0.867 Sum_probs=72.0
Q ss_pred CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
||++.++ +.+|+|+|+|++|.++++||++||.+||+++|||+|++ .|++|+|+|+||+++|||++||+||++||++
T Consensus 1 gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glT~~D~~lA~~id~l 76 (76)
T cd00913 1 GWELADD--GLKLERTFRFKNFVEALEFVNAVGEIAEAEGHHPDLSL-GWGRVRVTWWTHSIGGLSENDFIMAAKIDAL 76 (76)
T ss_pred CCcCcCC--CCeEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eccEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence 7999765 55899999999999999999999999999999999999 5999999999999999999999999999975
No 6
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=99.94 E-value=1.6e-26 Score=169.55 Aligned_cols=75 Identities=40% Similarity=0.708 Sum_probs=71.0
Q ss_pred CCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 125 GWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 125 GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
||++.+ +.+|+|+|+|++|.+|++||++|+.+||++||||+|++ .|++|+|+|+||+++|||++||+||++||++
T Consensus 1 gW~~~~---~~~l~r~f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~-~~~~V~v~l~Th~~~glt~~D~~lA~~id~~ 75 (75)
T cd00488 1 GWELAD---GDALERTFKFKDFKEAIAFVNRVAELAEALNHHPDISN-VYNKVTVTLTTHDAGGLTENDFILAAKIDAL 75 (75)
T ss_pred CCcCCC---CCcEEEEEEcCCHHHHHHHHHHHHHHHHHcCCCCCEEE-eeeEEEEEEEeCCCCCCCHHHHHHHHHHhcC
Confidence 799975 34899999999999999999999999999999999999 5999999999999999999999999999975
No 7
>KOG4073 consensus Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 [Transcription]
Probab=99.92 E-value=3.8e-25 Score=171.11 Aligned_cols=97 Identities=26% Similarity=0.395 Sum_probs=82.9
Q ss_pred CCCCCHHHHHHhccC--CCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCC
Q 027937 108 QTPMSADDAKKLLKK--VVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSS 185 (216)
Q Consensus 108 ~~~Lt~~ei~~lL~~--L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs 185 (216)
...|+..|-...+.. ..||.+..+ ...|+|+|.|+||.+|+.||.+||..||++||||+|++ .||+|.|+|+||+
T Consensus 5 ~~~~~~~er~~~ll~~~~agW~l~~~--rd~i~kef~fKdF~~a~~FmtrVal~Ae~~~HHPew~n-vynkV~itL~THd 81 (104)
T KOG4073|consen 5 AHRLNESERKLKLLTLKAAGWDLVEG--RDAIFKEFRFKDFNQAFGFMTRVALRAEKLGHHPEWFN-VYNKVKITLSTHD 81 (104)
T ss_pred hhhhhhhHHhccchhhhhcCCCcccC--ccceeeEEEeecHHHHHHHHHHHHHHHHHhcCCchhhe-eeeeeEEEEEecc
Confidence 344554443333333 359999876 45999999999999999999999999999999999999 5999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcC
Q 027937 186 IGGLSMNDFIVAAKLDQIRTSD 207 (216)
Q Consensus 186 ~gGLT~~Df~LAakID~l~~~d 207 (216)
+||||++||.||.+||.++.++
T Consensus 82 ~ggLse~Dv~lA~~Ie~~a~~~ 103 (104)
T KOG4073|consen 82 IGGLSENDVKLAKFIESLAVEM 103 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998654
No 8
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=39.51 E-value=5.6 Score=31.14 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 175 NQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 175 ~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
..|.+.+-...+|.+|+.|+.||...+.+
T Consensus 42 ~~v~i~Ii~~~VG~it~sDI~~A~~~~a~ 70 (108)
T PF11987_consen 42 DEVKIKIIHAGVGPITESDIELASASNAI 70 (108)
T ss_dssp SSSCEEESEEEESSBHHHHHHHHHHHC-E
T ss_pred ccccccEEEeeCCCCCHHHHHHHHhhCCE
Confidence 34778888889999999999999987754
No 9
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=23.80 E-value=73 Score=27.93 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceee
Q 027937 108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLH 170 (216)
Q Consensus 108 ~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~ 170 (216)
.+||+.+++.+.+..+..|++..+ .|-..=.|..+..+.+.++++++.+ ||+|.
T Consensus 146 l~Pl~~~~a~~mi~~l~~~~lL~G------~RG~p~~d~~al~~~l~~ls~l~~~---~p~I~ 199 (222)
T PF13549_consen 146 LPPLSEADAREMIRELRAYPLLRG------YRGRPPADLDALADLLVRLSQLAAD---LPEIA 199 (222)
T ss_dssp ESS--HHHHHHHHHTSTTHHHHH-------------B-HHHHHHHHHHHHHHHHH---TTTEE
T ss_pred eCCCCHHHHHHHHHHHHhHHhhcc------cCCCCCcCHHHHHHHHHHHHHHHHh---CCCEE
Confidence 578999999999999999988765 2223234677788888888888874 57653
No 10
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=23.09 E-value=1.5e+02 Score=24.10 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=31.3
Q ss_pred CEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeec
Q 027937 126 WRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHL 171 (216)
Q Consensus 126 W~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l 171 (216)
|+-..+ +..|. -|.=..-.++.+|+.-|.++|++..|+|++++
T Consensus 15 wedd~~--g~~Iv-AFaee~dpdG~eFl~ilk~vA~~nt~np~Lsi 57 (120)
T cd03074 15 WEDDLD--GIHIV-AFAEEEDPDGYEFLEILKEVARDNTDNPDLSI 57 (120)
T ss_pred hhcccC--CceEE-EEeccCCccHHHHHHHHHHHHHhcCcCCCceE
Confidence 754432 33333 35444456899999999999999999999876
No 11
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=20.32 E-value=1.7e+02 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=36.3
Q ss_pred cCCccccchhhCCccCCCCCCCCCCHHHHHHhccC-CCCCEEec
Q 027937 88 IPKLSALSLAEQDCSPASPFQTPMSADDAKKLLKK-VVGWRLLE 130 (216)
Q Consensus 88 ~P~~~~~~Ls~~~C~p~~~~~~~Lt~~ei~~lL~~-L~GW~l~~ 130 (216)
.|...+++..+.+|....-..|.|+.+|.+.+... .++|+...
T Consensus 616 Gp~gNllE~~~eq~~rl~L~~PvL~~~e~ealk~~~y~~wk~k~ 659 (2142)
T KOG0399|consen 616 GPEGNLLEPGPEQCSRLILKGPVLNEEEMEALKNDMYPGWKVKE 659 (2142)
T ss_pred cCCcCcccCChhHhceeeccCCcCCHHHHHHHhcCCCccceeee
Confidence 67778899999999988778899999999887765 57999963
Done!