Query 027937
Match_columns 216
No_of_seqs 151 out of 1081
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jst_A Putative pterin-4-alpha 100.0 6.4E-33 2.2E-37 212.4 11.7 94 108-204 3-96 (97)
2 1ru0_A DCOH-like protein dcohm 100.0 5.4E-33 1.9E-37 215.7 11.0 100 103-205 2-103 (105)
3 3hxa_A Pterin-4-alpha-carbinol 100.0 9E-33 3.1E-37 214.2 11.3 98 106-206 3-102 (104)
4 2v6u_A Pterin-4A-carbinolamine 100.0 1.7E-32 6E-37 212.5 11.5 97 107-206 5-101 (104)
5 2ebb_A Pterin-4-alpha-carbinol 100.0 4.4E-32 1.5E-36 209.4 12.7 94 109-206 1-94 (101)
6 1usm_A DCOH, hepatocyte nuclea 100.0 1E-29 3.5E-34 188.4 10.2 79 124-205 1-79 (80)
7 1z9b_A Translation initiation 40.9 7.4 0.00025 30.8 0.7 29 175-203 67-95 (135)
8 2ge7_A Nucleocapsid protein; N 37.5 8.8 0.0003 29.6 0.6 18 57-77 16-33 (108)
9 2gib_A Nucleocapsid protein; d 32.7 12 0.00042 28.5 0.7 19 57-77 7-25 (103)
10 2cjr_A Nucleocapsid protein; o 32.3 11 0.00037 29.8 0.4 19 57-77 37-55 (128)
11 4hti_A Receptor-type tyrosine- 28.8 73 0.0025 24.0 4.4 52 142-195 19-71 (99)
12 1uw4_A UPF3X; nonsense mediate 25.5 1.6E+02 0.0055 21.3 5.7 50 107-156 9-65 (91)
13 3lqv_P Splicing factor 3B subu 24.7 45 0.0015 21.2 2.1 20 107-128 19-38 (39)
No 1
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=100.00 E-value=6.4e-33 Score=212.41 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCC
Q 027937 108 QTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIG 187 (216)
Q Consensus 108 ~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~g 187 (216)
.++||++|++++|..||||++.++ +..|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+|+||++|
T Consensus 3 ~~~Ls~~ei~~~L~~l~gW~~~~~--~~~l~r~f~f~~f~~a~~f~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~g 79 (97)
T 3jst_A 3 RNRLTESEMNEALRALDGWQKVDG--REAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFN-AYNRVDVTLATHSEN 79 (97)
T ss_dssp CSCCCHHHHHHHHHTSTTCEECTT--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGGT
T ss_pred CCCCCHHHHHHHhhcCCCCeEeCC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEeCCCC
Confidence 578999999999999999999854 56899999999999999999999999999999999999 599999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 027937 188 GLSMNDFIVAAKLDQIR 204 (216)
Q Consensus 188 GLT~~Df~LAakID~l~ 204 (216)
|||++||+||++||+++
T Consensus 80 GlT~~D~~lA~~id~la 96 (97)
T 3jst_A 80 GVTELDIKMARKMNAIA 96 (97)
T ss_dssp BCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999986
No 2
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=100.00 E-value=5.4e-33 Score=215.65 Aligned_cols=100 Identities=20% Similarity=0.332 Sum_probs=91.3
Q ss_pred CCCCCCCCCCHHHHHHhccCC--CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEE
Q 027937 103 PASPFQTPMSADDAKKLLKKV--VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAE 180 (216)
Q Consensus 103 p~~~~~~~Lt~~ei~~lL~~L--~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~ 180 (216)
.|+++.++|+++|++++|.+| +||++.++ +.+|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+
T Consensus 2 ~~~~~~~~Ls~~ei~~~L~~l~~~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~ 78 (105)
T 1ru0_A 2 SMSSDAQWLTAEERDQLIPGLKAAGWSELSE--RDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEWFN-VYNKVQIT 78 (105)
T ss_dssp ----CCSBCCHHHHHHHHHHHHHTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCCCeEECC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEE
Confidence 356788999999999999998 89999765 45899999999999999999999999999999999999 59999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHhh
Q 027937 181 LWTSSIGGLSMNDFIVAAKLDQIRT 205 (216)
Q Consensus 181 LtTHs~gGLT~~Df~LAakID~l~~ 205 (216)
|+||++||||++||+||++||+++.
T Consensus 79 l~THd~gGlt~~D~~lA~~id~l~~ 103 (105)
T 1ru0_A 79 LTSHDCGGLTKRDVKLAQFIEKAAA 103 (105)
T ss_dssp ECBTTTTBCBHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984
No 3
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=100.00 E-value=9e-33 Score=214.21 Aligned_cols=98 Identities=27% Similarity=0.382 Sum_probs=91.0
Q ss_pred CCCCCCCHHHHHHhccCC--CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEc
Q 027937 106 PFQTPMSADDAKKLLKKV--VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWT 183 (216)
Q Consensus 106 ~~~~~Lt~~ei~~lL~~L--~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtT 183 (216)
++.++||++|++++|.+| +||++.++ +.+|+|+|+|+||.+|++|||+||.+||+++|||+|++ +||+|+|+|+|
T Consensus 3 ~~~~~Ls~~ei~~~L~~L~~~gW~~~~~--~~~l~r~f~F~~f~~a~~F~~~Va~~AE~~~HHPdi~~-~y~~V~v~l~T 79 (104)
T 3hxa_A 3 GKAHRLSAEERDQLLPNLRAVGWNELEG--RDAIFKQFHFKDFNRAFGFMSRVALQAEKLDHHPEWFN-VYNKVHITLST 79 (104)
T ss_dssp --CCCCCHHHHHHHSHHHHTTTCEECSS--SSCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECB
T ss_pred CCCccCCHHHHHHHHhhCCCCCCEEecC--CCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEE-eCCEEEEEEEe
Confidence 578999999999999998 89999754 45899999999999999999999999999999999999 59999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc
Q 027937 184 SSIGGLSMNDFIVAAKLDQIRTS 206 (216)
Q Consensus 184 Hs~gGLT~~Df~LAakID~l~~~ 206 (216)
|++||||++||+||++||+++.+
T Consensus 80 Hd~gGlT~~D~~lA~~id~la~~ 102 (104)
T 3hxa_A 80 HECAGLSERDINLASFIEQVAVS 102 (104)
T ss_dssp TTTTBCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 4
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=99.98 E-value=1.7e-32 Score=212.47 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=91.4
Q ss_pred CCCCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCC
Q 027937 107 FQTPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSI 186 (216)
Q Consensus 107 ~~~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~ 186 (216)
.+++|+++|++++|..|+||++.++ +.+|+|+|+|+||.+|++|||+||.+||++||||+|++ +||+|+|+|+||++
T Consensus 5 ~~~~Ls~~ei~~~L~~l~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~ 81 (104)
T 2v6u_A 5 ARLAANSARLLQLHKTVPQWHLTDG--HLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYN-VYNTVDVELSTHDA 81 (104)
T ss_dssp CCCCTTCHHHHHHHTTSTTSEECGG--GCCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBGGG
T ss_pred cCCCCCHHHHHHHhhcCCCCeEeCC--cCeEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCC
Confidence 4578999999999999999999865 56899999999999999999999999999999999999 59999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 027937 187 GGLSMNDFIVAAKLDQIRTS 206 (216)
Q Consensus 187 gGLT~~Df~LAakID~l~~~ 206 (216)
||||++||+||++||+++..
T Consensus 82 gGlT~~D~~lA~~id~l~~~ 101 (104)
T 2v6u_A 82 AGLTEKDFALAKFMDDAAKN 101 (104)
T ss_dssp TBCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999853
No 5
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=99.98 E-value=4.4e-32 Score=209.38 Aligned_cols=94 Identities=24% Similarity=0.489 Sum_probs=89.1
Q ss_pred CCCCHHHHHHhccCCCCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCC
Q 027937 109 TPMSADDAKKLLKKVVGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGG 188 (216)
Q Consensus 109 ~~Lt~~ei~~lL~~L~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gG 188 (216)
.+|+++|++++|..||||++.++ + .|+|+|+|+||.+|++|||+||.+||++||||+|++ +||+|+|+|+||++||
T Consensus 1 ~~Ls~~ei~~~L~~l~gW~~~~~--~-~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~gG 76 (101)
T 2ebb_A 1 MRLTEEEVQALLEKADGWKLADE--R-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPFISI-DYKLITVKLSSWRAKG 76 (101)
T ss_dssp CCCCHHHHHHHHHTSTTCEEETT--T-EEEEEEECSSHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTEEEEEECBTTTTB
T ss_pred CCCCHHHHHHHhhcCCCCeECCC--C-CEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCCC
Confidence 36999999999999999999865 3 699999999999999999999999999999999999 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc
Q 027937 189 LSMNDFIVAAKLDQIRTS 206 (216)
Q Consensus 189 LT~~Df~LAakID~l~~~ 206 (216)
||++||+||++||+++.+
T Consensus 77 lt~~D~~lA~~id~l~~~ 94 (101)
T 2ebb_A 77 LTKLDFDLAKQYDEVYNQ 94 (101)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999999864
No 6
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=99.96 E-value=1e-29 Score=188.36 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.1
Q ss_pred CCCEEecccCcceEEEEEEcCChHHHHHHHHHHHHHHHHcCCCceeeccCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 124 VGWRLLEEEGGLKLQCLWKLRDFKCGVELINRIYKVTEAAGHFPNLHLEQPNQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 124 ~GW~l~~~~g~~~L~R~f~F~dF~~A~~Fvn~VA~vAE~~~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
|||++.++ +.+|+|+|+|+||.+|++||++||.+||+++|||+|++ +|++|+|+|+||++||||++||+||++||++
T Consensus 1 ~gW~~~~~--~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~-~y~~V~v~l~THd~gGlt~~D~~lA~~id~l 77 (80)
T 1usm_A 1 MDWEEREN--LKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTV-EWGRVTVEWWTHSAGGVTEKDREMARLTDAL 77 (80)
T ss_dssp CCCEEC-----CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEE-ETTEEEEEECBTTTTBCCHHHHHHHHHHHHT
T ss_pred CCCeEeCC--ccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEE-eCCEEEEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 69999754 56899999999999999999999999999999999999 5999999999999999999999999999998
Q ss_pred hh
Q 027937 204 RT 205 (216)
Q Consensus 204 ~~ 205 (216)
+.
T Consensus 78 ~~ 79 (80)
T 1usm_A 78 LQ 79 (80)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 7
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=40.93 E-value=7.4 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 027937 175 NQVRAELWTSSIGGLSMNDFIVAAKLDQI 203 (216)
Q Consensus 175 ~~V~V~LtTHs~gGLT~~Df~LAakID~l 203 (216)
..|.|.+-...+|++|+.|+.||...+++
T Consensus 67 ~ev~i~Ii~~gVG~ItesDV~lA~as~ai 95 (135)
T 1z9b_A 67 EGVRVKIIHAAVGAITESDISLATASNAI 95 (135)
T ss_dssp SSCEEEEEEEEESCBCHHHHHHHHHHTCE
T ss_pred CceEEEEEeecCCCCCHHHHHHHHHcCCE
Confidence 34788888888999999999999987654
No 8
>2ge7_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, dimerization domain, virus/viral protein/RNA binding protein complex; 2.00A {Infectious bronchitis virus} SCOP: d.254.1.2 PDB: 2ge8_A 2ca1_A
Probab=37.54 E-value=8.8 Score=29.56 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.7
Q ss_pred cCCCCCCChhhhhhCcccccc
Q 027937 57 DFGARDPFPAELESGFGEKVL 77 (216)
Q Consensus 57 dfgardp~~~e~~s~f~~k~l 77 (216)
-||.|+|.. +.|||+.-+
T Consensus 16 ~FG~R~~g~---~~NFGd~~~ 33 (108)
T 2ge7_A 16 VFGPRTKGK---EGNFGDDKM 33 (108)
T ss_dssp HHCSCCSSS---TTCBCCHHH
T ss_pred eecCCCCCC---CCCcCcHHH
Confidence 499999987 899999876
No 9
>2gib_A Nucleocapsid protein; dimer, viral protein; 1.75A {Sars coronavirus} SCOP: d.254.1.2
Probab=32.69 E-value=12 Score=28.47 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.5
Q ss_pred cCCCCCCChhhhhhCcccccc
Q 027937 57 DFGARDPFPAELESGFGEKVL 77 (216)
Q Consensus 57 dfgardp~~~e~~s~f~~k~l 77 (216)
-||.|+|. .++.|||+.-+
T Consensus 7 ~FG~R~~~--~~~~NFGd~~~ 25 (103)
T 2gib_A 7 AFGRRGPE--QTQGNFGDQDL 25 (103)
T ss_dssp HHCCCCSS--TTSCCBCCHHH
T ss_pred eecCCCCC--cccCccCcHHH
Confidence 38999985 57899999876
No 10
>2cjr_A Nucleocapsid protein; oligomerization domain, viral protein; 2.50A {Sars coronavirus} SCOP: d.254.1.2 PDB: 2jw8_A
Probab=32.31 E-value=11 Score=29.85 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.7
Q ss_pred cCCCCCCChhhhhhCcccccc
Q 027937 57 DFGARDPFPAELESGFGEKVL 77 (216)
Q Consensus 57 dfgardp~~~e~~s~f~~k~l 77 (216)
-||.|+|. .++.|||+.-+
T Consensus 37 ~FG~R~~~--~~~~NFGd~~~ 55 (128)
T 2cjr_A 37 AFGRRGPE--QTQGNFGDQDL 55 (128)
T ss_dssp HHCCCCSS--TTSCCBCCHHH
T ss_pred eecCCCCC--cccCccCcHHH
Confidence 59999984 57899999876
No 11
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=28.82 E-value=73 Score=23.97 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=39.1
Q ss_pred EcCChHHHHHHHHHHHHHHHHc-CCCceeeccCCCeEEEEEEcCCCCCCCHHHHH
Q 027937 142 KLRDFKCGVELINRIYKVTEAA-GHFPNLHLEQPNQVRAELWTSSIGGLSMNDFI 195 (216)
Q Consensus 142 ~F~dF~~A~~Fvn~VA~vAE~~-~HHPdI~l~~y~~V~V~LtTHs~gGLT~~Df~ 195 (216)
.|.++.++..||..+|++-.-. +-.-++++ ....|++++..-+ .++|.-|+.
T Consensus 19 ~~l~~~~G~~l~~~la~~l~l~~~~F~~isV-~g~aVTFrV~~N~-~n~taadVA 71 (99)
T 4hti_A 19 DPLRPEEGRRLVEDVARLLQVPSSAFADVEV-LGPAVTFKVSANV-QNVTTEDVE 71 (99)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCCGGGEEEEEE-ETTEEEEEECCCT-TCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCchhheeeeee-cCceEEEEeccCC-CCCCHHHHH
Confidence 5678999999999887765322 33446777 4789999996665 589999974
No 12
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=25.52 E-value=1.6e+02 Score=21.28 Aligned_cols=50 Identities=4% Similarity=0.090 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHhccCCCC--C-EEecc---cCcceEEE-EEEcCChHHHHHHHHHH
Q 027937 107 FQTPMSADDAKKLLKKVVG--W-RLLEE---EGGLKLQC-LWKLRDFKCGVELINRI 156 (216)
Q Consensus 107 ~~~~Lt~~ei~~lL~~L~G--W-~l~~~---~g~~~L~R-~f~F~dF~~A~~Fvn~V 156 (216)
-++.||++|..+.|..++. | ....+ .+...-.| -..|++..+..+|.+++
T Consensus 9 LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 9 LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 3678999999999987642 2 22222 12223344 44899988888887766
No 13
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.69 E-value=45 Score=21.23 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHhccCCCCCEE
Q 027937 107 FQTPMSADDAKKLLKKVVGWRL 128 (216)
Q Consensus 107 ~~~~Lt~~ei~~lL~~L~GW~l 128 (216)
...+||++|+...|+ .|.++
T Consensus 19 RNrpltDEeLD~mLP--~GYkI 38 (39)
T 3lqv_P 19 RNRPLSDEELDAMFP--EGYKV 38 (39)
T ss_dssp TTCCCCHHHHHHTCC--SSEEE
T ss_pred hcCCCCHHHHHHhCC--CCccc
Confidence 568999999999998 47765
Done!