Query 027938
Match_columns 216
No_of_seqs 165 out of 796
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145 Cystine transporter Cy 100.0 3.2E-52 6.9E-57 362.0 6.7 191 1-192 171-363 (372)
2 TIGR00951 2A43 Lysosomal Cysti 100.0 2.2E-34 4.8E-39 245.8 14.0 168 2-185 52-220 (220)
3 PF04193 PQ-loop: PQ loop repe 99.4 1.7E-12 3.7E-17 89.1 6.2 55 93-147 2-56 (61)
4 KOG2913 Predicted membrane pro 99.3 1.1E-11 2.4E-16 108.3 10.5 92 87-189 3-94 (260)
5 KOG2913 Predicted membrane pro 99.3 3E-12 6.6E-17 111.9 3.5 87 91-189 164-250 (260)
6 TIGR00951 2A43 Lysosomal Cysti 99.2 1.6E-10 3.4E-15 99.0 9.9 91 94-187 5-102 (220)
7 smart00679 CTNS Repeated motif 98.9 4.2E-10 9.1E-15 67.6 2.3 32 106-137 1-32 (32)
8 KOG3145 Cystine transporter Cy 98.6 6.3E-09 1.4E-13 91.8 0.7 97 92-189 123-228 (372)
9 KOG3211 Predicted endoplasmic 98.2 6.1E-06 1.3E-10 69.7 7.4 90 90-190 139-228 (230)
10 COG4095 Uncharacterized conser 98.0 6.4E-05 1.4E-09 55.3 8.5 74 94-178 6-79 (89)
11 PF03083 MtN3_slv: Sugar efflu 97.7 8.8E-05 1.9E-09 54.1 6.0 81 96-188 6-86 (87)
12 KOG2489 Transmembrane protein 95.9 0.11 2.4E-06 49.5 11.4 56 77-132 452-508 (592)
13 KOG3211 Predicted endoplasmic 95.4 0.05 1.1E-06 46.3 6.4 83 92-185 30-112 (230)
14 KOG1623 Multitransmembrane pro 94.6 0.13 2.7E-06 45.0 6.9 87 92-189 8-94 (243)
15 PHA02246 hypothetical protein 94.4 0.2 4.4E-06 40.9 7.2 45 101-145 117-161 (192)
16 KOG1623 Multitransmembrane pro 93.0 1.8 3.9E-05 37.8 11.2 62 105-170 140-201 (243)
17 PF00810 ER_lumen_recept: ER l 89.4 5.7 0.00012 32.0 10.0 50 91-140 91-140 (147)
18 KOG2533 Permease of the major 79.8 14 0.00029 35.5 9.3 13 4-16 290-302 (495)
19 PF02487 CLN3: CLN3 protein; 76.3 36 0.00078 31.9 10.8 45 96-141 121-165 (402)
20 PF08611 DUF1774: Fungal prote 75.5 9 0.00019 28.9 5.3 11 196-206 87-97 (97)
21 PHA02706 hypothetical protein; 66.0 2.2 4.7E-05 28.3 0.2 43 160-208 12-54 (58)
22 PHA02246 hypothetical protein 64.8 24 0.00051 29.1 6.0 51 95-145 7-57 (192)
23 PF06679 DUF1180: Protein of u 60.1 20 0.00043 29.5 4.9 7 198-204 138-144 (163)
24 KOG0828 Predicted E3 ubiquitin 59.7 58 0.0013 31.6 8.4 36 95-130 452-488 (636)
25 PF14360 PAP2_C: PAP2 superfam 48.2 13 0.00028 26.3 1.7 26 31-56 2-27 (74)
26 KOG3106 ER lumen protein retai 39.6 2.4E+02 0.0052 24.1 9.7 75 93-172 116-190 (212)
27 PF07077 DUF1345: Protein of u 39.6 2.2E+02 0.0047 23.6 11.1 35 109-144 33-67 (180)
28 KOG2325 Predicted transporter/ 37.1 3.9E+02 0.0085 25.8 10.6 13 40-52 74-86 (488)
29 TIGR02894 DNA_bind_RsfA transc 35.5 19 0.00042 29.5 1.1 31 5-35 47-86 (161)
30 PTZ00370 STEVOR; Provisional 34.8 62 0.0013 29.1 4.3 13 181-194 277-289 (296)
31 COG4736 CcoQ Cbb3-type cytochr 33.5 59 0.0013 22.3 3.1 26 166-191 12-37 (60)
32 PRK09697 protein secretion pro 32.2 35 0.00075 26.6 2.0 9 177-186 76-84 (139)
33 KOG3106 ER lumen protein retai 31.9 1.8E+02 0.0038 24.9 6.3 25 108-132 16-40 (212)
34 PHA00726 hypothetical protein 29.6 69 0.0015 23.6 3.0 27 166-193 9-35 (89)
35 PF11368 DUF3169: Protein of u 28.2 46 0.001 28.6 2.3 14 128-141 15-28 (248)
36 PF08507 COPI_assoc: COPI asso 27.7 1.4E+02 0.0031 23.1 4.9 18 164-181 90-107 (136)
37 PF13965 SID-1_RNA_chan: dsRNA 27.7 6E+02 0.013 25.0 15.8 29 85-113 448-476 (570)
38 PF05915 DUF872: Eukaryotic pr 27.4 2.9E+02 0.0062 21.3 6.4 75 109-191 34-108 (115)
39 PF04148 Erv26: Transmembrane 26.4 2.3E+02 0.0051 24.3 6.2 57 121-185 62-118 (211)
40 PRK15049 L-asparagine permease 25.0 5.9E+02 0.013 24.0 11.6 16 128-143 422-437 (499)
41 PF06105 Aph-1: Aph-1 protein; 24.1 1E+02 0.0022 26.8 3.7 65 125-192 27-92 (238)
42 PF07444 Ycf66_N: Ycf66 protei 22.1 67 0.0015 23.5 1.9 21 30-50 34-54 (84)
43 TIGR01478 STEVOR variant surfa 20.6 1.4E+02 0.0029 27.0 3.8 19 174-194 275-293 (295)
44 KOG3058 Uncharacterized conser 20.4 65 0.0014 29.7 1.8 40 30-69 206-245 (351)
No 1
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-52 Score=362.03 Aligned_cols=191 Identities=52% Similarity=0.861 Sum_probs=179.4
Q ss_pred CeeeecccccHHHHHHHHHhcCCCCCCCeechhHHHHHHHHHHHHHHHhhheeecCCCcccch-hHHHHHHHHHHHHHHh
Q 027938 1 MIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVC 79 (216)
Q Consensus 1 ~~~n~~~~~s~~ir~qy~~r~~~~~~~~V~~~Dv~f~~h~~~l~~i~~~Q~~~Y~r~~q~~s~-~~~~i~~~~~~~~~~~ 79 (216)
++||+++||+|.+++||..++|+| .|||..||++||+||++++++++.||+.|+|++|++|+ .+.+++.++|+++.++
T Consensus 171 ~ifn~~ly~~~~iq~~y~~~~p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~ 249 (372)
T KOG3145|consen 171 SIFNFLLYYCPKIQNQYDTSYPLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVF 249 (372)
T ss_pred HHHHHHHHhcHHhccceeccCCCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHH
Confidence 479999999999999999999966 49999999999999999999999999999999999999 6888888999988888
Q ss_pred Hhhcc-CCCChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCccccccc
Q 027938 80 FFVAL-PNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG 158 (216)
Q Consensus 80 ~~~~~-~~~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~ 158 (216)
+..+. .+..|+|..+.++++|..++++||+||.++||.||||+||||+++++|++||.++++|+++++.|++||..+.+
T Consensus 250 ~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~g 329 (372)
T KOG3145|consen 250 MYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYG 329 (372)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhc
Confidence 87775 45679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 027938 159 NIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVIS 192 (216)
Q Consensus 159 n~~~l~~~~~~i~~d~iil~Q~y~lY~~~~~~~~ 192 (216)
||+|+++|+++++||++|+.|||++|++++..+.
T Consensus 330 np~KfGLg~vSi~FdiiFm~QhyVly~~~~~~~s 363 (372)
T KOG3145|consen 330 NPGKFGLGLVSIFFDIIFMMQHYVLYPRGHVLKS 363 (372)
T ss_pred CchhhhhhhHHHHHHHHHHhhheeEeccccccCC
Confidence 9999999999999999999999999987765443
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=2.2e-34 Score=245.80 Aligned_cols=168 Identities=36% Similarity=0.518 Sum_probs=144.1
Q ss_pred eeeecccccHHHHHHHHHhcCCCCCCCeechhHHHHHHHHHHHHHHHhhheeecCCCcccchhHHHHHHHHHHHHHHhHh
Q 027938 2 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFF 81 (216)
Q Consensus 2 ~~n~~~~~s~~ir~qy~~r~~~~~~~~V~~~Dv~f~~h~~~l~~i~~~Q~~~Y~r~~q~~s~~~~~i~~~~~~~~~~~~~ 81 (216)
+||+++||+|.+|+||..|+| + |+.||++|++|+++++++++.|+..|+|++|++|..+.+.+...+....++..
T Consensus 52 ~yn~~~~~~~~~~~~~~~~~~-~----v~~edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 126 (220)
T TIGR00951 52 IFNFLQLYCWSITNEFPLSSP-G----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLL 126 (220)
T ss_pred HHHHHHhcchhhhhccccccC-C----CcHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHH
Confidence 689999999999999998886 2 99999999999999999999999999988999999988666544332222222
Q ss_pred hc-cCCCChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccch
Q 027938 82 VA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNI 160 (216)
Q Consensus 82 ~~-~~~~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~ 160 (216)
.. .....|+++.+.++++|..++++||+||+++|||||||+|||+.++++|++| .+|+++++.++. +|+
T Consensus 127 ~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~~~------gd~ 196 (220)
T TIGR00951 127 VALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVNET------GDP 196 (220)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHHHc------CCH
Confidence 11 2456899999999999999999999999999999999999999999999999 666677765432 899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 027938 161 GKTLLSLVSVVFDLLFICQHYVLYP 185 (216)
Q Consensus 161 ~~l~~~~~~i~~d~iil~Q~y~lY~ 185 (216)
+|++++.+++++|.+++.||| +|+
T Consensus 197 ~~l~~~~~s~~~n~i~~~Q~~-~y~ 220 (220)
T TIGR00951 197 LKAGLFVVSSLFNGLFAAQVF-FYW 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hcC
Confidence 999999999999999999998 664
No 3
>PF04193 PQ-loop: PQ loop repeat
Probab=99.36 E-value=1.7e-12 Score=89.08 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhh
Q 027938 93 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS 147 (216)
Q Consensus 93 ~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~ 147 (216)
.+.+|+++.++++++++||+++|||+||++|+|+.++.++++|+++.+++.+++.
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~ 56 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSN 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567999999999999999999999999999999999999999999999988764
No 4
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.32 E-value=1.1e-11 Score=108.32 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHH
Q 027938 87 HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLS 166 (216)
Q Consensus 87 ~~~~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~ 166 (216)
.+|..+...+|.++.+.+++..+||+++|||+||++|+|+.+++.|+.|+++.+.+..+.. +++..+..+
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~----------~~~~~~~~~ 72 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP----------LGSTLKVQA 72 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc----------cchhHHHHH
Confidence 3566678889999999999999999999999999999999999999999999999988743 346667778
Q ss_pred HHHHHHHHHHHHHHHhhccCCcc
Q 027938 167 LVSVVFDLLFICQHYVLYPAKKA 189 (216)
Q Consensus 167 ~~~i~~d~iil~Q~y~lY~~~~~ 189 (216)
..-++.|.+.+.|.+ +|++..+
T Consensus 73 ~yy~~~d~~l~~q~~-yy~~~~~ 94 (260)
T KOG2913|consen 73 VYYTLADSVLFVQCL-YYGNIYP 94 (260)
T ss_pred HHHHHHHHHHHHHHH-hcchhcc
Confidence 888899999999964 7765544
No 5
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.25 E-value=3e-12 Score=111.89 Aligned_cols=87 Identities=28% Similarity=0.339 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHH
Q 027938 91 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV 170 (216)
Q Consensus 91 ~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i 170 (216)
..+..+|++++.++...++|||++|++||||+|+|+.++.+...|+.++..+ +.+..|.||+.++..++
T Consensus 164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s-----------~~~~~n~~w~~~~~~~~ 232 (260)
T KOG2913|consen 164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS-----------SYLVTNLPWLVDSKGTI 232 (260)
T ss_pred chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-----------cccccCCcccccCCcch
Confidence 3666789999999999999999999999999999999999999999999776 33457899999999999
Q ss_pred HHHHHHHHHHHhhccCCcc
Q 027938 171 VFDLLFICQHYVLYPAKKA 189 (216)
Q Consensus 171 ~~d~iil~Q~y~lY~~~~~ 189 (216)
.+|++++.|.+ .||+++.
T Consensus 233 ~~D~~~~~q~~-~~~~~~~ 250 (260)
T KOG2913|consen 233 YLDIFIFLQFF-NYRASKA 250 (260)
T ss_pred hHHHHHHHHHH-Hhhcccc
Confidence 99999999987 7777663
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.17 E-value=1.6e-10 Score=99.00 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhc---ccCcccccccch----hhHHHH
Q 027938 94 NFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI---DQNSWVNFYGNI----GKTLLS 166 (216)
Q Consensus 94 ~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~---~~~~~~~i~~n~----~~l~~~ 166 (216)
..+|++..+.+.++++||+++||||||++|+|+.++.++++|...+.+..+..-. .+++.. ..++ -.+..+
T Consensus 5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~--~~~~~v~~edl~~a 82 (220)
T TIGR00951 5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFP--LSSPGVTQNDVFFT 82 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccc--cccCCCcHHHHHHH
Confidence 5679999999999999999999999999999999999999999999988654321 111111 1122 358889
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 027938 167 LVSVVFDLLFICQHYVLYPAK 187 (216)
Q Consensus 167 ~~~i~~d~iil~Q~y~lY~~~ 187 (216)
+..++.+++++.|.. .|+++
T Consensus 83 i~~~il~~l~~~q~~-~~~~~ 102 (220)
T TIGR00951 83 LHAILICFIVLHQCG-DYERG 102 (220)
T ss_pred HHHHHHHHHHHHHHh-hcccc
Confidence 999999999999975 66543
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.95 E-value=4.2e-10 Score=67.65 Aligned_cols=32 Identities=50% Similarity=0.748 Sum_probs=29.8
Q ss_pred hhcchhhhhhhhcCCcCCcChHHHHHHHHhhH
Q 027938 106 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC 137 (216)
Q Consensus 106 ~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v 137 (216)
++++||+++|||+||++|+|+.++++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 46899999999999999999999999999974
No 8
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=98.65 E-value=6.3e-09 Score=91.85 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhc---ccCcc--cc-cccchh---h
Q 027938 92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI---DQNSW--VN-FYGNIG---K 162 (216)
Q Consensus 92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~---~~~~~--~~-i~~n~~---~ 162 (216)
.-.++||+--+-+.+++.||+++||||||++|+|..++.++++|-..+.+..++.-. .+++. .. ...+|. -
T Consensus 123 l~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nD 202 (372)
T KOG3145|consen 123 LDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLND 202 (372)
T ss_pred HHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhh
Confidence 344567877788999999999999999999999999999999998888776554322 22222 21 111221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcc
Q 027938 163 TLLSLVSVVFDLLFICQHYVLYPAKKA 189 (216)
Q Consensus 163 l~~~~~~i~~d~iil~Q~y~lY~~~~~ 189 (216)
+.-++..+++.+|.+.|+. .|.+...
T Consensus 203 v~fslHa~lmt~Iti~Qc~-~yeR~~q 228 (372)
T KOG3145|consen 203 VVFSLHAVLMTVITILQCF-FYERGWQ 228 (372)
T ss_pred hhhhHHHHHHHHHHHHHHH-hhhhccc
Confidence 6678899999999999986 7865443
No 9
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.17 E-value=6.1e-06 Score=69.71 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHH
Q 027938 90 LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVS 169 (216)
Q Consensus 90 ~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~ 169 (216)
.|+....-.....+..++++||+..|||+|+|..+|....++.+.|.....+.-+-+ .+++..++.-.++
T Consensus 139 ~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~----------t~d~~mll~~v~s 208 (230)
T KOG3211|consen 139 LWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE----------TGDFLMLLRFVIS 208 (230)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh----------cCChhhHHHHHHH
Confidence 344444444456678899999999999999999999999999999999997765532 2345555666788
Q ss_pred HHHHHHHHHHHHhhccCCccc
Q 027938 170 VVFDLLFICQHYVLYPAKKAV 190 (216)
Q Consensus 170 i~~d~iil~Q~y~lY~~~~~~ 190 (216)
.+.+.++..|.. .|++++++
T Consensus 209 ~~~Ng~i~aq~l-~Y~s~~~~ 228 (230)
T KOG3211|consen 209 LALNGLITAQVL-RYWSTAIK 228 (230)
T ss_pred HHHhHHHHHHHH-HHHhcCCC
Confidence 899999999976 88876553
No 10
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=6.4e-05 Score=55.34 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHH
Q 027938 94 NFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFD 173 (216)
Q Consensus 94 ~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d 173 (216)
...|+++..++.+.++||..+-+|.|+|++.|+.++..-..|-.++++.-++- + +.|-+..-.+++.+.
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi----~-------~lPii~aN~i~~il~ 74 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI----N-------DLPIIIANIISFILS 74 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH----c-------cCcchhHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999888865542 1 334444444555555
Q ss_pred HHHHH
Q 027938 174 LLFIC 178 (216)
Q Consensus 174 ~iil~ 178 (216)
+++++
T Consensus 75 liIl~ 79 (89)
T COG4095 75 LIILF 79 (89)
T ss_pred HHHHH
Confidence 55554
No 11
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=97.73 E-value=8.8e-05 Score=54.06 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHHHH
Q 027938 96 FNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLL 175 (216)
Q Consensus 96 lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d~i 175 (216)
++.+..++...+.+||+.+.+|+||++++|+...+..++++.+++..-++ .+||..+..|.. .+++.++
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l----~~d~~i~~~N~~-------g~~~~~~ 74 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL----INDWPIIVPNVF-------GLVLSII 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh----cCCeeEEeeHHH-------HHHHHHH
Confidence 34555667778889999999999999999999999999999999876554 456766666653 3344445
Q ss_pred HHHHHHhhccCCc
Q 027938 176 FICQHYVLYPAKK 188 (216)
Q Consensus 176 il~Q~y~lY~~~~ 188 (216)
.++-++ .|++++
T Consensus 75 ~~~~~~-~y~~~~ 86 (87)
T PF03083_consen 75 YLVVYY-IYPSKK 86 (87)
T ss_pred HHhheE-EeCCCC
Confidence 555544 565544
No 12
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=95.91 E-value=0.11 Score=49.48 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=41.3
Q ss_pred HHhHhhccCCCCh-HHHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHH
Q 027938 77 AVCFFVALPNHSW-LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD 132 (216)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~ 132 (216)
.+.+.+..+|.+| .|+++.+...-..+-++--.||...|||-||+.-+.=.++.--
T Consensus 452 aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYK 508 (592)
T KOG2489|consen 452 AVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYK 508 (592)
T ss_pred HHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHH
Confidence 4555555688998 6777775433355667777899999999999999987665543
No 13
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=95.38 E-value=0.05 Score=46.35 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHH
Q 027938 92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 171 (216)
Q Consensus 92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~ 171 (216)
+...+|+.-..-++.-.+|||.+--..||.+|+|...+.+.+.|-..++....-.+.. ++. .+=..+-++
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~p---Fss-------~gE~~fLl~ 99 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYP---FSS-------YGEYPFLLL 99 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCC---chh-------HHHHHHHHH
Confidence 4555777778888888999999999999999999999999999988886655432211 111 222334455
Q ss_pred HHHHHHHHHHhhcc
Q 027938 172 FDLLFICQHYVLYP 185 (216)
Q Consensus 172 ~d~iil~Q~y~lY~ 185 (216)
=+.+++.+.+ .|+
T Consensus 100 Q~vili~~if-~f~ 112 (230)
T KOG3211|consen 100 QAVILILCIF-HFS 112 (230)
T ss_pred HHHHHHHHHH-Hhc
Confidence 5777788876 676
No 14
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=94.60 E-value=0.13 Score=44.97 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHH
Q 027938 92 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV 171 (216)
Q Consensus 92 ~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~ 171 (216)
+...+|.+..+.-+.+-+|-.+.-+|||||||.|..-+++.+.++.+++-.-+.. .+|+..+.-|- +.++
T Consensus 8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~---~~d~llitIN~-------~G~~ 77 (243)
T KOG1623|consen 8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLK---VHDYLLITING-------IGLV 77 (243)
T ss_pred HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhc---cCceEEEEEeh-------hcHH
Confidence 3434454445555677789999999999999999999999999999997644331 22666666664 2223
Q ss_pred HHHHHHHHHHhhccCCcc
Q 027938 172 FDLLFICQHYVLYPAKKA 189 (216)
Q Consensus 172 ~d~iil~Q~y~lY~~~~~ 189 (216)
.-.+.+.=+ .+|..+|+
T Consensus 78 ie~~Yi~~f-~~ya~~k~ 94 (243)
T KOG1623|consen 78 IETVYISIF-LYYAPKKK 94 (243)
T ss_pred HHHHHHHHH-heecCchh
Confidence 334444443 36765554
No 15
>PHA02246 hypothetical protein
Probab=94.40 E-value=0.2 Score=40.94 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHh
Q 027938 101 VIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV 145 (216)
Q Consensus 101 ~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~ 145 (216)
...-...|+|||+.=||.|+.||-+++..+.--.|-.+-...+++
T Consensus 117 t~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L 161 (192)
T PHA02246 117 TITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL 161 (192)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence 455567899999999999999999999877766665555555555
No 16
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=93.00 E-value=1.8 Score=37.85 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred HhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHH
Q 027938 105 LIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSV 170 (216)
Q Consensus 105 ~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i 170 (216)
..+-+--+.+=-|+||||.++...-+..++-+..+.+.-++ -+|.....-|..-+.++++++
T Consensus 140 ~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGll----i~D~~IaipN~iG~~l~~~QL 201 (243)
T KOG1623|consen 140 FAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLL----IKDFFIAIPNVLGFLLGLIQL 201 (243)
T ss_pred hhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHH----hcCeEEEcccHHHHHHHHHHH
Confidence 33444445566778999999998766665555555443322 234444445654455555554
No 17
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=89.37 E-value=5.7 Score=31.99 Aligned_cols=50 Identities=8% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHH
Q 027938 91 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY 140 (216)
Q Consensus 91 ~~~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl 140 (216)
++.+++=..+..+.+++-+||..+-.|++.+|.+....++.-.+.-++++
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~ 140 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYL 140 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHH
Confidence 45555556678999999999999999999999999998887755555543
No 18
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=79.75 E-value=14 Score=35.53 Aligned_cols=13 Identities=0% Similarity=-0.049 Sum_probs=10.3
Q ss_pred eecccccHHHHHH
Q 027938 4 NVVLFFSSTVQQQ 16 (216)
Q Consensus 4 n~~~~~s~~ir~q 16 (216)
|...+|.|.+-++
T Consensus 290 ~~~~~~lpl~l~~ 302 (495)
T KOG2533|consen 290 YGFSYWLPLYLKS 302 (495)
T ss_pred ccHHHHHHHHHHc
Confidence 5567888988888
No 19
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=76.34 E-value=36 Score=31.90 Aligned_cols=45 Identities=9% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHH
Q 027938 96 FNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYS 141 (216)
Q Consensus 96 lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ 141 (216)
+..++..+.=+.++.+ ..-|.+.+..|||.+.=.--++|+..+..
T Consensus 121 las~ssg~GE~tfL~l-t~~y~~~~l~~wssGTG~aGl~Ga~~y~~ 165 (402)
T PF02487_consen 121 LASLSSGLGEVTFLSL-THFYGKSSLSAWSSGTGGAGLVGALYYLG 165 (402)
T ss_pred HHhhhhhhhHHHHHHH-HHhcCccccccccCCcChhhHHHHHHHHH
Confidence 4444444444555554 55777889999999988888888887754
No 20
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=75.47 E-value=9 Score=28.89 Aligned_cols=11 Identities=45% Similarity=0.595 Sum_probs=8.8
Q ss_pred CCCCCCCCCCC
Q 027938 196 SKDGGVEPLLK 206 (216)
Q Consensus 196 ~~~~~~~pll~ 206 (216)
+.|.||+|||.
T Consensus 87 ~~d~EraPLLn 97 (97)
T PF08611_consen 87 STDRERAPLLN 97 (97)
T ss_pred CCccccccccC
Confidence 36789999984
No 21
>PHA02706 hypothetical protein; Provisional
Probab=65.99 E-value=2.2 Score=28.27 Aligned_cols=43 Identities=30% Similarity=0.561 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCC
Q 027938 160 IGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSS 208 (216)
Q Consensus 160 ~~~l~~~~~~i~~d~iil~Q~y~lY~~~~~~~~~~~~~~~~~~pll~~~ 208 (216)
....++|+.+++.|.++++..| +-+++...... +|.+|||..-
T Consensus 12 iimmllgi~siiidtvifinay--fvkkr~~~~k~----~e~~pll~kt 54 (58)
T PHA02706 12 IIMMLLGIASIIIDTVIFINAY--FVKKRKCINKK----DEIEPLLDKT 54 (58)
T ss_pred HHHHHHhhHHHhhheeeeeehh--hhhhhhhcccc----cccchhhhhh
Confidence 3446788899999999999976 33332222222 5778998654
No 22
>PHA02246 hypothetical protein
Probab=64.78 E-value=24 Score=29.12 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHh
Q 027938 95 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIV 145 (216)
Q Consensus 95 ~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~ 145 (216)
+++.+-+.+-.+.|+||...-.|.|+++|.|-++--+-.....+|...++.
T Consensus 7 ~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSfyNlL~ 57 (192)
T PHA02246 7 YLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISFYNLLL 57 (192)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555677788999999999999999999998766666555566555554
No 23
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=60.14 E-value=20 Score=29.53 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=4.7
Q ss_pred CCCCCCC
Q 027938 198 DGGVEPL 204 (216)
Q Consensus 198 ~~~~~pl 204 (216)
.-|..||
T Consensus 138 ~~Em~pL 144 (163)
T PF06679_consen 138 NVEMAPL 144 (163)
T ss_pred cceeccc
Confidence 3467788
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.71 E-value=58 Score=31.60 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhcC-CcCCcChHHHH
Q 027938 95 FFNAIQVIMTLIKYIPQAIMNFRRK-STDGFSIGNIL 130 (216)
Q Consensus 95 ~lg~i~~~l~~~k~iPQi~~NykrK-St~GlSi~~~~ 130 (216)
++-.+-++++---.||||+.|-+|. |..-+-..+++
T Consensus 452 yf~~iLif~~~SfWIPQIv~Nvvrg~SR~Pl~w~yIl 488 (636)
T KOG0828|consen 452 YFIPILIFMYYSFWIPQIVANVVRGDSRKPLHWYYIL 488 (636)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCCcchhhhh
Confidence 3445556666677899999999994 55445444443
No 25
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=48.16 E-value=13 Score=26.27 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHhhheeecC
Q 027938 31 ANDVAFSMHAVLLTIITLFQIAIYER 56 (216)
Q Consensus 31 ~~Dv~f~~h~~~l~~i~~~Q~~~Y~r 56 (216)
-+|+.|+-|...+.+..+....+.+|
T Consensus 2 CgDliFSGHt~~~~l~~l~~~~y~~~ 27 (74)
T PF14360_consen 2 CGDLIFSGHTAFLTLCALFWWEYSPR 27 (74)
T ss_pred CCCEEEchhHHHHHHHHHHHHHHccc
Confidence 37999999999988888877654443
No 26
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.64 E-value=2.4e+02 Score=24.08 Aligned_cols=75 Identities=11% Similarity=0.194 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHH
Q 027938 93 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVF 172 (216)
Q Consensus 93 ~~~lg~i~~~l~~~k~iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~ 172 (216)
.+++=..+.-+..++-+||..+--|.+.+|-+-...++.--+--.++..--+.+-..++-| .+..++.++++.++
T Consensus 116 ~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~-----~~iai~agiVQT~l 190 (212)
T KOG3106|consen 116 LEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTEDFW-----DPIAIVAGIVQTVL 190 (212)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchHHHHHHHHHHH
Confidence 3333345688999999999999999999999999888766444444544444333222212 23346667777543
No 27
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.58 E-value=2.2e+02 Score=23.56 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=14.6
Q ss_pred chhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHH
Q 027938 109 IPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMI 144 (216)
Q Consensus 109 iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~ 144 (216)
=|+-..-+.++.-+|=. ....+-+++.+.++..++
T Consensus 33 ~~~~~r~~a~~ed~~~~-~~~~~~~~a~~asl~ai~ 67 (180)
T PF07077_consen 33 DPERTRRRARREDEGRW-VILLLVLVAAFASLVAIV 67 (180)
T ss_pred CHHHHHHHHHhccccch-hHHHHHHHHHHHHHHHHH
Confidence 45555444444443332 222233334444444443
No 28
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=37.12 E-value=3.9e+02 Score=25.79 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhe
Q 027938 40 AVLLTIITLFQIA 52 (216)
Q Consensus 40 ~~~l~~i~~~Q~~ 52 (216)
|++.+..-+.|++
T Consensus 74 G~viaa~slg~~i 86 (488)
T KOG2325|consen 74 GLVIAASSLGHAI 86 (488)
T ss_pred hHHHHHHHHHHHh
Confidence 7777777777774
No 29
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.52 E-value=19 Score=29.54 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=22.4
Q ss_pred ecccccHHHHHHHHHhc---------CCCCCCCeechhHH
Q 027938 5 VVLFFSSTVQQQYFQKY---------GRDQMIPVAANDVA 35 (216)
Q Consensus 5 ~~~~~s~~ir~qy~~r~---------~~~~~~~V~~~Dv~ 35 (216)
|+|-||..||+||.+.- +......+.+.|++
T Consensus 47 CGFRWNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI 86 (161)
T TIGR02894 47 CGFRWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVI 86 (161)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHH
Confidence 88999999999998752 11112457788887
No 30
>PTZ00370 STEVOR; Provisional
Probab=34.78 E-value=62 Score=29.11 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.9
Q ss_pred HhhccCCccccccc
Q 027938 181 YVLYPAKKAVISSK 194 (216)
Q Consensus 181 y~lY~~~~~~~~~~ 194 (216)
| +||++++...||
T Consensus 277 w-lyrrRK~swkhe 289 (296)
T PTZ00370 277 W-LYRRRKNSWKHE 289 (296)
T ss_pred H-HHHhhcchhHHH
Confidence 5 899988877654
No 31
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=59 Score=22.32 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccc
Q 027938 166 SLVSVVFDLLFICQHYVLYPAKKAVI 191 (216)
Q Consensus 166 ~~~~i~~d~iil~Q~y~lY~~~~~~~ 191 (216)
+++++.+-++++.=.|..||+.++..
T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhh
Confidence 34444554555555566888765544
No 32
>PRK09697 protein secretion protein GspB; Provisional
Probab=32.20 E-value=35 Score=26.58 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=5.5
Q ss_pred HHHHHhhccC
Q 027938 177 ICQHYVLYPA 186 (216)
Q Consensus 177 l~Q~y~lY~~ 186 (216)
--||| ++++
T Consensus 76 s~qH~-~FKK 84 (139)
T PRK09697 76 STQHY-FFKK 84 (139)
T ss_pred hhhhe-eeec
Confidence 45887 5644
No 33
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.93 E-value=1.8e+02 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=19.2
Q ss_pred cchhhhhhhhcCCcCCcChHHHHHH
Q 027938 108 YIPQAIMNFRRKSTDGFSIGNILLD 132 (216)
Q Consensus 108 ~iPQi~~NykrKSt~GlSi~~~~l~ 132 (216)
-+==+.+-||.||++|+|.+.=.+-
T Consensus 16 i~vLi~Ki~ktrsCaGiSlKSQ~L~ 40 (212)
T KOG3106|consen 16 IIVLILKIWKTKSCAGISLKSQELF 40 (212)
T ss_pred HHHHHHHHHhcCccccccchHHHHH
Confidence 3334678899999999999865554
No 34
>PHA00726 hypothetical protein
Probab=29.56 E-value=69 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccc
Q 027938 166 SLVSVVFDLLFICQHYVLYPAKKAVISS 193 (216)
Q Consensus 166 ~~~~i~~d~iil~Q~y~lY~~~~~~~~~ 193 (216)
+-+.+.||.+++.-.- ++|+.|++...
T Consensus 9 aei~l~fD~i~l~~sL-LFRKpK~k~~~ 35 (89)
T PHA00726 9 AEIVLVFDTIMLTTAL-LFRKPKPKKVK 35 (89)
T ss_pred HHHHHHHHHHHHHHHH-HhcCCCCchhh
Confidence 3466789999999874 99988887653
No 35
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.17 E-value=46 Score=28.64 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=7.2
Q ss_pred HHHHHHHhhHHHHH
Q 027938 128 NILLDFLGGCTNYS 141 (216)
Q Consensus 128 ~~~l~~~G~v~sl~ 141 (216)
.++-.++||+.-.+
T Consensus 15 illg~~iGg~~G~~ 28 (248)
T PF11368_consen 15 ILLGGLIGGFIGFF 28 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445566665544
No 36
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=27.75 E-value=1.4e+02 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.492 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027938 164 LLSLVSVVFDLLFICQHY 181 (216)
Q Consensus 164 ~~~~~~i~~d~iil~Q~y 181 (216)
..|...++.-++.+.-|+
T Consensus 90 i~g~~~~~~G~~~i~l~~ 107 (136)
T PF08507_consen 90 IIGLLLFLVGVIYIILGF 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444445555544
No 37
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=27.73 E-value=6e+02 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhcchhhh
Q 027938 85 PNHSWLWLINFFNAIQVIMTLIKYIPQAI 113 (216)
Q Consensus 85 ~~~~~~~~~~~lg~i~~~l~~~k~iPQi~ 113 (216)
...+....+-.+.....+++++-|+=|=+
T Consensus 448 ~~~df~~~~l~i~i~n~~lY~~fYiimKi 476 (570)
T PF13965_consen 448 SPRDFASFLLAIFIGNLLLYLFFYIIMKI 476 (570)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444445667788888875544
No 38
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=27.39 E-value=2.9e+02 Score=21.27 Aligned_cols=75 Identities=8% Similarity=0.050 Sum_probs=41.8
Q ss_pred chhhhhhhhcCCcCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHhhccCCc
Q 027938 109 IPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKK 188 (216)
Q Consensus 109 iPQi~~NykrKSt~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d~iil~Q~y~lY~~~~ 188 (216)
-|++-.|||.- ...++|-++|.++-.+++++....- + ..-....+.+++|++.++=-+--+...|+.||..+
T Consensus 34 ~P~~k~pwK~I------~la~~Lli~G~~li~~g~l~~~~~i-~-~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~ 105 (115)
T PF05915_consen 34 HPKVKIPWKSI------ALAVFLLIFGTVLIIIGLLLFFGHI-D-GDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYK 105 (115)
T ss_pred hhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccc-C-CCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 46666666643 2356677778877777766533110 1 11122355667776666555555555566677766
Q ss_pred ccc
Q 027938 189 AVI 191 (216)
Q Consensus 189 ~~~ 191 (216)
...
T Consensus 106 Gys 108 (115)
T PF05915_consen 106 GYS 108 (115)
T ss_pred CCC
Confidence 543
No 39
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=26.43 E-value=2.3e+02 Score=24.25 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=43.6
Q ss_pred cCCcChHHHHHHHHhhHHHHHHHHhhhcccCcccccccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 027938 121 TDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP 185 (216)
Q Consensus 121 t~GlSi~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~n~~~l~~~~~~i~~d~iil~Q~y~lY~ 185 (216)
.||++....++.+.....+.- +-++|..+.-.-|.++++.+.++.|=.+.++|+ .-+
T Consensus 62 ~D~~P~~~~l~si~s~~~Y~~-------~L~~fP~i~ltsp~Fi~S~~lvi~nH~lwf~~F-~~~ 118 (211)
T PF04148_consen 62 FDGFPFWLTLFSIFSHLVYLR-------NLRTFPFISLTSPSFILSCVLVILNHFLWFRHF-SSP 118 (211)
T ss_pred cCCCCHHHHHHHHHHHHHHHH-------HhCCCCeeecCCHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 589999888877776666633 224588887777889999999999999999976 443
No 40
>PRK15049 L-asparagine permease; Provisional
Probab=25.02 E-value=5.9e+02 Score=24.05 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=7.1
Q ss_pred HHHHHHHhhHHHHHHH
Q 027938 128 NILLDFLGGCTNYSQM 143 (216)
Q Consensus 128 ~~~l~~~G~v~sl~ql 143 (216)
....+..+.++.++-+
T Consensus 422 ~p~~~~~~l~~~~~~~ 437 (499)
T PRK15049 422 APFTSWLTLLFLLSVL 437 (499)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3444444444444433
No 41
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=24.09 E-value=1e+02 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHhhhcccCccccccc-chhhHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 027938 125 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYG-NIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVIS 192 (216)
Q Consensus 125 Si~~~~l~~~G~v~sl~ql~~~~~~~~~~~~i~~-n~~~l~~~~~~i~~d~iil~Q~y~lY~~~~~~~~ 192 (216)
.|.-+++-+.|+.++++++++.+.- |..++. ......+-.+++++-=.+=+=+|.+||+.++.+.
T Consensus 27 ~p~liIi~i~~aFfWLvSLLlss~i---W~i~~pl~~~l~f~v~~sV~~QE~fR~~~~~ll~kae~gL~ 92 (238)
T PF06105_consen 27 DPQLIIILIAGAFFWLVSLLLSSLI---WFIVVPLRDNLAFGVLFSVLIQEAFRYLYYKLLKKAEEGLQ 92 (238)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHH---HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999987753 332211 1112334455555555555555666776555543
No 42
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.11 E-value=67 Score=23.53 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.7
Q ss_pred echhHHHHHHHHHHHHHHHhh
Q 027938 30 AANDVAFSMHAVLLTIITLFQ 50 (216)
Q Consensus 30 ~~~Dv~f~~h~~~l~~i~~~Q 50 (216)
+=.|++|+.-+++...+.+.|
T Consensus 34 Rd~D~~fs~vgLl~g~IL~~~ 54 (84)
T PF07444_consen 34 RDYDIFFSSVGLLYGLILWFQ 54 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 446999999999999999998
No 43
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.57 E-value=1.4e+02 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=12.5
Q ss_pred HHHHHHHHhhccCCccccccc
Q 027938 174 LLFICQHYVLYPAKKAVISSK 194 (216)
Q Consensus 174 ~iil~Q~y~lY~~~~~~~~~~ 194 (216)
+||++= | +||++|+...||
T Consensus 275 liiLYi-W-lyrrRK~swkhe 293 (295)
T TIGR01478 275 LIILYI-W-LYRRRKKSWKHE 293 (295)
T ss_pred HHHHHH-H-HHHhhccccccc
Confidence 334443 5 899988877665
No 44
>KOG3058 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.38 E-value=65 Score=29.74 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=31.5
Q ss_pred echhHHHHHHHHHHHHHHHhhheeecCCCcccchhHHHHH
Q 027938 30 AANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 69 (216)
Q Consensus 30 ~~~Dv~f~~h~~~l~~i~~~Q~~~Y~r~~q~~s~~~~~i~ 69 (216)
...|+.|+-|.+++++..+.+--++.|+.+.++..++.+.
T Consensus 206 lCGDlmfSGHTlvl~~~~l~~~eY~pr~~~~L~~i~wll~ 245 (351)
T KOG3058|consen 206 LCGDLMFSGHTLVLTLTALFITEYSPRRFIILHWISWLLA 245 (351)
T ss_pred cccceeeecchHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 6899999999999999988887777777676666665433
Done!