Query 027938
Match_columns 216
No_of_seqs 165 out of 796
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 17.7 4.5E+02 0.015 22.2 11.1 17 127-143 386-402 (445)
2 1zza_A Stannin, AG8_1; helix, 8.6 4.8E+02 0.017 17.8 4.1 23 164-186 18-40 (90)
3 2jln_A MHP1; hydantoin, transp 8.0 5.5E+02 0.019 22.9 5.6 20 122-141 405-424 (501)
4 3gia_A Uncharacterized protein 5.4 1.3E+03 0.044 19.2 12.9 6 134-139 378-383 (444)
5 3g9r_A Fusion complex of HIV-1 5.0 6E+02 0.021 15.1 2.7 15 89-103 11-25 (42)
6 1jb0_I Photosystem 1 reaction 4.6 5.6E+02 0.019 15.1 2.4 28 158-186 8-35 (38)
7 2dt7_A Splicing factor 3A subu 4.0 4.4E+02 0.015 15.3 1.6 9 15-23 23-31 (38)
8 1td6_A F10_ORF294, hypothetica 3.9 6.4E+02 0.022 21.2 3.0 27 18-46 249-275 (306)
9 3bwu_D FIMD, outer membrane us 3.5 2.1E+02 0.0073 20.5 -0.2 8 109-116 115-122 (125)
10 1v54_M VIIIB, IX, cytochrome C 3.1 9.8E+02 0.034 14.5 3.2 8 29-36 10-17 (46)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=17.75 E-value=4.5e+02 Score=22.19 Aligned_cols=17 Identities=0% Similarity=-0.181 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHH
Q 027938 127 GNILLDFLGGCTNYSQM 143 (216)
Q Consensus 127 ~~~~l~~~G~v~sl~ql 143 (216)
....+..+|.++.+.-+
T Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAV 402 (445)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44566666666665543
No 2
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=8.62 E-value=4.8e+02 Score=17.76 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 027938 164 LLSLVSVVFDLLFICQHYVLYPA 186 (216)
Q Consensus 164 ~~~~~~i~~d~iil~Q~y~lY~~ 186 (216)
+.-++.+.--..++.-+||+-|-
T Consensus 18 ~viliavaalg~li~gcwcylrl 40 (90)
T 1zza_A 18 IVILIAIAALGALILGCWCYLRL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455667777865553
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=8.03 E-value=5.5e+02 Score=22.90 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=17.0
Q ss_pred CCcChHHHHHHHHhhHHHHH
Q 027938 122 DGFSIGNILLDFLGGCTNYS 141 (216)
Q Consensus 122 ~GlSi~~~~l~~~G~v~sl~ 141 (216)
.|++...+.-.++|.+..+.
T Consensus 405 ~g~n~~a~~a~~~G~~~~~~ 424 (501)
T 2jln_A 405 RGVNWVALAVYAVALAVSFL 424 (501)
T ss_dssp TTBCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999887754
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=5.36 E-value=1.3e+03 Score=19.24 Aligned_cols=6 Identities=0% Similarity=-0.335 Sum_probs=2.2
Q ss_pred HhhHHH
Q 027938 134 LGGCTN 139 (216)
Q Consensus 134 ~G~v~s 139 (216)
.|.++.
T Consensus 378 ~~~~~~ 383 (444)
T 3gia_A 378 FSFIVV 383 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 5
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=5.03 E-value=6e+02 Score=15.08 Aligned_cols=15 Identities=20% Similarity=0.497 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHH
Q 027938 89 WLWLINFFNAIQVIM 103 (216)
Q Consensus 89 ~~~~~~~lg~i~~~l 103 (216)
|..+...++|+|.++
T Consensus 11 WFdItkWlwyIKI~i 25 (42)
T 3g9r_A 11 WFNITNWLWYIKIEE 25 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 333556677887654
No 6
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=4.58 E-value=5.6e+02 Score=15.07 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccC
Q 027938 158 GNIGKTLLSLVSVVFDLLFICQHYVLYPA 186 (216)
Q Consensus 158 ~n~~~l~~~~~~i~~d~iil~Q~y~lY~~ 186 (216)
.+.|.++.=++.++|=.+.+.-.+ +|-.
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf-~yIe 35 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLF-LYIE 35 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHH-HHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHH-Hhhc
Confidence 367888888888888888888765 6643
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.01 E-value=4.4e+02 Score=15.29 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=7.1
Q ss_pred HHHHHhcCC
Q 027938 15 QQYFQKYGR 23 (216)
Q Consensus 15 ~qy~~r~~~ 23 (216)
++|.+|||.
T Consensus 23 ke~Hrr~P~ 31 (38)
T 2dt7_A 23 KEFHRKHPN 31 (38)
T ss_dssp HHHHHSCCS
T ss_pred HHHHHhCCC
Confidence 478889984
No 8
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=3.87 E-value=6.4e+02 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHhcCCCCCCCeechhHHHHHHHHHHHHH
Q 027938 18 FQKYGRDQMIPVAANDVAFSMHAVLLTII 46 (216)
Q Consensus 18 ~~r~~~~~~~~V~~~Dv~f~~h~~~l~~i 46 (216)
..-+| .+ |+|+++|++.++|.-+..++
T Consensus 249 v~yfP-~h-Pdv~v~~LA~~I~QYv~n~~ 275 (306)
T 1td6_A 249 VSYFP-LH-PPVPLAQLAAKIYEYVSQIV 275 (306)
T ss_dssp HHTTT-SC-CSSCHHHHHHHHHHHHHHHS
T ss_pred HHhcC-CC-CCccHHHHHHHHHHHHHHHH
Confidence 33466 33 67999999999998776554
No 9
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=3.45 E-value=2.1e+02 Score=20.47 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=4.5
Q ss_pred chhhhhhh
Q 027938 109 IPQAIMNF 116 (216)
Q Consensus 109 iPQi~~Ny 116 (216)
+||+++.+
T Consensus 115 IPQa~l~~ 122 (125)
T 3bwu_D 115 IPQAFMSN 122 (125)
T ss_dssp CCGGGBCC
T ss_pred cCHHHHhh
Confidence 56666544
No 10
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=3.11 E-value=9.8e+02 Score=14.52 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.2
Q ss_pred eechhHHH
Q 027938 29 VAANDVAF 36 (216)
Q Consensus 29 V~~~Dv~f 36 (216)
++.-|.+.
T Consensus 10 ~s~~E~ai 17 (46)
T 1v54_M 10 TSPKEQAI 17 (46)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 33444443
Done!