Query 027938
Match_columns 216
No_of_seqs 165 out of 796
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wjpa2 g.37.1.1 (A:43-66) Zin 5.4 1.5E+02 0.011 14.5 1.5 18 3-20 5-22 (26)
2 d2j8cl1 f.26.1.1 (L:1-281) L ( 4.5 5E+02 0.036 20.0 4.9 11 31-41 182-192 (281)
3 d2i5nl1 f.26.1.1 (L:1-273) L ( 4.5 7E+02 0.051 18.9 6.2 58 32-89 183-259 (273)
4 d1v7fa_ g.3.6.2 (A:) Phrixotox 4.4 1.2E+02 0.009 15.2 0.7 8 117-124 12-19 (29)
5 d2b59b1 a.139.1.1 (B:104-163) 4.2 1.4E+02 0.01 17.8 1.0 11 171-181 41-51 (60)
6 d1s6la2 d.357.1.2 (A:81-212) A 3.4 6.4E+02 0.046 16.8 4.7 40 5-44 82-122 (132)
7 d2cmyb1 g.2.4.1 (B:7-29) Tryps 3.0 1.4E+02 0.011 14.5 0.1 6 17-22 6-11 (26)
8 d1xmta_ d.108.1.1 (A:) Hypothe 2.9 2.1E+02 0.015 18.2 0.9 13 10-22 72-84 (95)
9 d1exqa_ c.55.3.2 (A:) Retrovir 2.8 5E+02 0.036 16.9 3.2 23 113-135 127-150 (154)
10 d2ch5a2 c.55.1.5 (A:1-117) N-a 2.6 6.1E+02 0.044 15.8 3.4 30 11-40 85-114 (117)
No 1
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.43 E-value=1.5e+02 Score=14.48 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=12.7
Q ss_pred eeecccccHHHHHHHHHh
Q 027938 3 YNVVLFFSSTVQQQYFQK 20 (216)
Q Consensus 3 ~n~~~~~s~~ir~qy~~r 20 (216)
|..+-||||..++|-..+
T Consensus 5 ycslrf~sp~lk~ehe~k 22 (26)
T d1wjpa2 5 YCSLRFFSPELKQEHESK 22 (26)
T ss_dssp TTCCCBSSHHHHHHHHHH
T ss_pred cceeeeCCHHHhhHhhhh
Confidence 344558899998876654
No 2
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.49 E-value=5e+02 Score=19.97 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=7.7
Q ss_pred chhHHHHHHHH
Q 027938 31 ANDVAFSMHAV 41 (216)
Q Consensus 31 ~~Dv~f~~h~~ 41 (216)
..-++||+|+-
T Consensus 182 gsaLl~AmHGa 192 (281)
T d2j8cl1 182 TNALALALHGA 192 (281)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 35678899953
No 3
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=4.47 E-value=7e+02 Score=18.94 Aligned_cols=58 Identities=19% Similarity=0.437 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHH-----------------HhhheeecCCCcccchhHHHHHHHHHHHHHHhHhhccC--CCCh
Q 027938 32 NDVAFSMHAVLLTIIT-----------------LFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALP--NHSW 89 (216)
Q Consensus 32 ~Dv~f~~h~~~l~~i~-----------------~~Q~~~Y~r~~q~~s~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 89 (216)
.-++||+|+-.+..++ ++++..|.-+.-++.++.+.+...+.....+|.++..+ ..+|
T Consensus 183 saLl~AmHGatILa~~~~g~~~e~~~~e~~~~FwR~~mG~s~~~~gIHR~~~~~A~~~~~~s~igIllsG~~~~~~W 259 (273)
T d2i5nl1 183 NAMALGLHGGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIASGPFWTRGW 259 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCCCCCHHHHHHHHHHHHSBCCCTTHHHHHHHHHHHHHHHHHHHHHHHBTTTBCSCH
T ss_pred HHHHHHhhhhheeeeecCCCCccccchHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhheEEEEECCcccCCh
Confidence 5678899954433332 23333333334456666554444333334556655543 3455
No 4
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Probab=4.35 E-value=1.2e+02 Score=15.24 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=5.7
Q ss_pred hcCCcCCc
Q 027938 117 RRKSTDGF 124 (216)
Q Consensus 117 krKSt~Gl 124 (216)
+||+.+|+
T Consensus 12 ~rkccegl 19 (29)
T d1v7fa_ 12 ARKCCEGL 19 (29)
T ss_dssp TCCBCTTC
T ss_pred hhhhhccc
Confidence 57777775
No 5
>d2b59b1 a.139.1.1 (B:104-163) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]}
Probab=4.19 E-value=1.4e+02 Score=17.83 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q 027938 171 VFDLLFICQHY 181 (216)
Q Consensus 171 ~~d~iil~Q~y 181 (216)
+.|++|+.||+
T Consensus 41 m~Di~Iv~khF 51 (60)
T d2b59b1 41 MQDIMIVHKHF 51 (60)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 57999999986
No 6
>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=3.43 E-value=6.4e+02 Score=16.78 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=26.2
Q ss_pred ecccccHHHHHHHHHhcCCCCCCC-eechhHHHHHHHHHHH
Q 027938 5 VVLFFSSTVQQQYFQKYGRDQMIP-VAANDVAFSMHAVLLT 44 (216)
Q Consensus 5 ~~~~~s~~ir~qy~~r~~~~~~~~-V~~~Dv~f~~h~~~l~ 44 (216)
+.||-|+.--+++++.||..+..+ +.+.|.+---+.++-.
T Consensus 82 v~FF~s~~~a~~W~~~hp~~~~~~il~l~eA~~lg~~~~~~ 122 (132)
T d1s6la2 82 VHFFASVPTAEDWASKHQGLEGLAIVSVHEAFGLGQEFNRH 122 (132)
T ss_dssp CEEESSHHHHHHHHHTTCSSSCCEEEEHHHHHHHHHHHHHH
T ss_pred eeEecCHHHHHHHHHhCCCCCCcceEeHHHHHHHHHHHHHH
Confidence 356889999999999999544444 5666655333444433
No 7
>d2cmyb1 g.2.4.1 (B:7-29) Trypsin inhibitor VhTI {Veronica hederifolia [TaxId: 202477]}
Probab=2.98 E-value=1.4e+02 Score=14.47 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=3.2
Q ss_pred HHHhcC
Q 027938 17 YFQKYG 22 (216)
Q Consensus 17 y~~r~~ 22 (216)
|++||+
T Consensus 6 yaqrhs 11 (26)
T d2cmyb1 6 YAQRHS 11 (26)
T ss_dssp HHBC--
T ss_pred hhhhcC
Confidence 778885
No 8
>d1xmta_ d.108.1.1 (A:) Hypothetical protein AT1g77540 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.86 E-value=2.1e+02 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=10.8
Q ss_pred cHHHHHHHHHhcC
Q 027938 10 SSTVQQQYFQKYG 22 (216)
Q Consensus 10 s~~ir~qy~~r~~ 22 (216)
-|.|++.|.+|||
T Consensus 72 Cpyv~~~~~~khp 84 (95)
T d1xmta_ 72 CSYVSDTFLPRNP 84 (95)
T ss_dssp SHHHHHTHHHHCG
T ss_pred CHHHHHHHHHhCh
Confidence 4678888999998
No 9
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.84 E-value=5e+02 Score=16.86 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=17.8
Q ss_pred hhhhhcC-CcCCcChHHHHHHHHh
Q 027938 113 IMNFRRK-STDGFSIGNILLDFLG 135 (216)
Q Consensus 113 ~~NykrK-St~GlSi~~~~l~~~G 135 (216)
..|++++ +..|.||.--+.++..
T Consensus 127 ~~N~~~~~~l~G~tP~er~~~~~~ 150 (154)
T d1exqa_ 127 IHNKKRKGGIGGYSAGERIVDIIA 150 (154)
T ss_dssp HHHHCCSSSSSCCCHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCCHHHHHHhhhc
Confidence 4788776 4679999998888764
No 10
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.63 E-value=6.1e+02 Score=15.76 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCCeechhHHHHHHH
Q 027938 11 STVQQQYFQKYGRDQMIPVAANDVAFSMHA 40 (216)
Q Consensus 11 ~~ir~qy~~r~~~~~~~~V~~~Dv~f~~h~ 40 (216)
..+++..+++||.-...-..-||..-|+.+
T Consensus 85 ~~l~~~l~~~~~~~~~~v~v~nDa~~Al~~ 114 (117)
T d2ch5a2 85 RILIEELRDRFPYLSESYLITTDAAGSIAT 114 (117)
T ss_dssp HHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCceEEEeccHHHHHhh
Done!