BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027939
(216 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/182 (59%), Positives = 126/182 (69%), Gaps = 9/182 (4%)
Query: 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 61
+GNVYVQFREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGY
Sbjct: 108 MIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGY 167
Query: 62 CNFMHLKRISRDLRRQLFG---RYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGR------ 112
CNFMH+K I RDLR++LFG R RR HS RSRS SPY +R DR S R
Sbjct: 168 CNFMHVKEIGRDLRKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYY 227
Query: 113 RYDDRDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKIEQWNREREQ 172
R D Y R S+ SR R SPVR+GSEERRA+IEQWNRERE
Sbjct: 228 RGGSHDYYRGGSRRSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREA 287
Query: 173 QE 174
+
Sbjct: 288 AQ 289
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/189 (56%), Positives = 126/189 (66%), Gaps = 33/189 (17%)
Query: 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 61
+GNVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGY
Sbjct: 108 MIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGY 167
Query: 62 CNFMHLKRISRDLRRQLFGRYRRRHSR-----------------SRSRSRSPYRHRSHED 104
CNFMH+K+ISR+LRR+LFGRYRR + R SR R R R D
Sbjct: 168 CNFMHVKQISRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVR-----D 222
Query: 105 RSHSGHGRRYDDR-DKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSEERRAKI 163
R G+G+R DR +++ R R SP RSRSP VREGSEERRA+I
Sbjct: 223 RDRHGNGKRSSDRSERHDRDGGGRRRHGSPK----RSRSPRN------VREGSEERRARI 272
Query: 164 EQWNREREQ 172
EQWNRER++
Sbjct: 273 EQWNRERDE 281
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/179 (56%), Positives = 120/179 (67%), Gaps = 14/179 (7%)
Query: 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 61
+GNVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGY
Sbjct: 108 MIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGY 167
Query: 62 CNFMHLKRISRDLRRQLFGRYRRRHSRSRSRSR-----SPYRHRSHEDRSHSGHGRRYDD 116
CNFMH+K +SR+LRR+LFGRYRR + R SP R ++ R S + D
Sbjct: 168 CNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRD 227
Query: 117 RDKYYESRSRRHRSTSPSHRRGRSRSPGGRRYHSP--------VREGSEERRAKIEQWN 167
RD+ + RS+ S R+ R S GRR SP REGSEERRA+IEQWN
Sbjct: 228 RDREFYRHGSGKRSSERSERQERDGS-RGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 71/78 (91%)
Query: 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGY 61
+GNVYVQFREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGY
Sbjct: 108 MIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGY 167
Query: 62 CNFMHLKRISRDLRRQLF 79
CNFMH+K+I R+LRR+L+
Sbjct: 168 CNFMHVKQIGRELRRKLY 185
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 81/137 (59%), Gaps = 27/137 (19%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYE 122
NFMHL+ ISR+LRRQL+GR R RSP RSH+GH
Sbjct: 170 NFMHLRPISRNLRRQLYGR--------GPRHRSP-------PRSHTGH------------ 202
Query: 123 SRSRRHRSTSPSHRRGR 139
R+R SP HR GR
Sbjct: 203 RPRERNRRRSPDHRHGR 219
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 81/137 (59%), Gaps = 27/137 (19%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHGRRYDDRDKYYE 122
NFMHL+ ISR+LRRQL+GR R RSP RSH+GH
Sbjct: 170 NFMHLRPISRNLRRQLYGR--------GPRHRSP-------PRSHTGH------------ 202
Query: 123 SRSRRHRSTSPSHRRGR 139
R+R SP HR GR
Sbjct: 203 RPRERNRRRSPDHRHGR 219
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHLK ISR+LRR+L+
Sbjct: 170 NFMHLKPISRELRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHLK ISR+LRR+L+
Sbjct: 170 NFMHLKPISRELRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHLK ISR+LRR+L+
Sbjct: 170 NFMHLKPISRELRRELY 186
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHL+ ISRDLRRQL+
Sbjct: 170 NFMHLRPISRDLRRQLY 186
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVY++FR E A +A L+ R++ GRP+ + SPVTDFREA CRQYE C R G+C
Sbjct: 112 VGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFC 171
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHLK ISR+LRR L+
Sbjct: 172 NFMHLKPISRELRRYLY 188
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 59/77 (76%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+FR EE RA+ LS R++ G+ + + SPVTDFRE+ CRQYE C RGG+C
Sbjct: 110 VGNVYVKFRREEDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFC 169
Query: 63 NFMHLKRISRDLRRQLF 79
NFMHL+ IS++L+RQL+
Sbjct: 170 NFMHLRPISQNLQRQLY 186
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 56/82 (68%)
Query: 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62
VGNVYV+F+ EE A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG C
Sbjct: 104 VGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLC 163
Query: 63 NFMHLKRISRDLRRQLFGRYRR 84
NFMH K+ S L R L R+
Sbjct: 164 NFMHAKKPSPQLLRDLVLAQRK 185
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 63
GNVYVQ++ EE+ AL +GR+YAGR + +F PVT ++ A C +E C RG +CN
Sbjct: 273 GNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCN 332
Query: 64 FMHLKR 69
F+H+ R
Sbjct: 333 FLHVFR 338
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 63
GNVYVQ++ EE+ AL +GR+YAGR + +F PVT ++ A C +E C RG +CN
Sbjct: 268 GNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCN 327
Query: 64 FMHLKR 69
F+H+ R
Sbjct: 328 FLHVFR 333
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 63
GNVYVQ++ EE+ AL +GR+YAGR + +F PVT ++ A C +E C +G +CN
Sbjct: 259 GNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCN 318
Query: 64 FMHLKR 69
F+H+ R
Sbjct: 319 FLHVFR 324
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCN 63
GNVYVQ++ EE A +GR+YAGR + +F PVT ++ A C +E C RG +CN
Sbjct: 272 GNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCN 331
Query: 64 FMHLKRIS----RDLRRQLF 79
F+H+ R RD R L+
Sbjct: 332 FLHVFRNPNNEYRDANRDLY 351
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGG 60
GNVYV ++ + A A S++GR++AG+ I +F VT ++ A C +Y + TC+RG
Sbjct: 259 GNVYVHYKSLDSALIAYSSMNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGI 318
Query: 61 YCNFMHLKR 69
CNF+H R
Sbjct: 319 ACNFIHCFR 327
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGG 60
GNVYV +R E A A +S++GR++AG+ + +F ++ ++ A C +Y ++ TC+RG
Sbjct: 336 GNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGS 395
Query: 61 YCNFMHLKR 69
CNF+H R
Sbjct: 396 ACNFIHCFR 404
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 9/158 (5%)
Query: 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVD-FSPVTDFREATCRQYEENTCNRGGYC 62
G V FRE E+A +++L GR++ GR I + TD++ E G+
Sbjct: 314 GVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQ--VEETSREREERLRGWE 371
Query: 63 NFMHLKRISRDLRRQ--LFGRYRRRHSRSRSRSRSPYRHRSHEDRSHSGHG-RRYDDRDK 119
F++ SR LRR + G R SR R S P + +G D +K
Sbjct: 372 AFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHPSMSNMKAQEATTGMAFEETIDENK 431
Query: 120 YYESRSRRHRSTSPSHRRGRSRSPGGRRYHSPVREGSE 157
+ ++ S + + GG P REG E
Sbjct: 432 FEKAEEGGESEGDASEKDAKE---GGSDGDHPEREGGE 466
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,335,494
Number of Sequences: 539616
Number of extensions: 4220203
Number of successful extensions: 31103
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 20460
Number of HSP's gapped (non-prelim): 5758
length of query: 216
length of database: 191,569,459
effective HSP length: 113
effective length of query: 103
effective length of database: 130,592,851
effective search space: 13451063653
effective search space used: 13451063653
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)