Query 027939
Match_columns 216
No_of_seqs 189 out of 320
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202 U2 snRNP splicing fact 100.0 5.7E-35 1.2E-39 259.0 7.9 95 1-95 108-203 (260)
2 KOG0147 Transcriptional coacti 99.0 2.8E-10 6E-15 110.3 3.7 42 4-45 491-532 (549)
3 smart00361 RRM_1 RNA recogniti 98.8 4.5E-09 9.8E-14 74.6 4.6 36 1-36 35-70 (70)
4 PF13893 RRM_5: RNA recognitio 98.6 5.4E-08 1.2E-12 65.6 5.2 35 4-38 22-56 (56)
5 KOG1548 Transcription elongati 98.5 1.6E-07 3.5E-12 87.8 5.0 46 1-46 312-358 (382)
6 KOG0107 Alternative splicing f 98.1 2.8E-05 6.2E-10 67.7 9.5 38 2-39 46-83 (195)
7 smart00360 RRM RNA recognition 97.6 0.00011 2.4E-09 47.3 4.1 34 3-36 38-71 (71)
8 cd00590 RRM RRM (RNA recogniti 97.6 0.00017 3.7E-09 47.0 4.8 35 3-37 40-74 (74)
9 smart00362 RRM_2 RNA recogniti 97.5 0.00016 3.6E-09 46.8 4.4 35 2-36 38-72 (72)
10 PF14259 RRM_6: RNA recognitio 97.5 0.00015 3.3E-09 49.7 4.2 32 3-34 39-70 (70)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.5 0.0003 6.5E-09 61.7 6.8 36 3-38 45-80 (352)
12 PLN03134 glycine-rich RNA-bind 97.5 0.00019 4.2E-09 58.3 5.1 37 2-38 75-111 (144)
13 PF00076 RRM_1: RNA recognitio 97.5 0.00018 3.9E-09 48.2 4.1 33 2-34 38-70 (70)
14 TIGR01659 sex-lethal sex-letha 97.4 0.00037 8E-09 64.3 6.8 36 3-38 149-184 (346)
15 smart00356 ZnF_C3H1 zinc finge 97.2 0.00021 4.6E-09 42.0 2.0 26 43-68 2-27 (27)
16 TIGR01628 PABP-1234 polyadenyl 97.1 0.00061 1.3E-08 64.5 4.7 36 3-38 326-361 (562)
17 KOG0110 RNA-binding protein (R 97.0 0.0017 3.7E-08 65.6 7.1 74 3-82 560-637 (725)
18 KOG4207 Predicted splicing fac 97.0 0.0037 7.9E-08 56.3 8.4 36 3-38 55-90 (256)
19 PF00642 zf-CCCH: Zinc finger 96.9 0.00022 4.7E-09 43.6 -0.0 25 43-67 1-26 (27)
20 TIGR01622 SF-CC1 splicing fact 96.9 0.0033 7.2E-08 57.5 7.3 37 3-40 131-167 (457)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 96.8 0.0058 1.3E-07 57.7 8.2 37 3-39 313-349 (481)
22 TIGR01648 hnRNP-R-Q heterogene 96.7 0.0027 5.8E-08 62.8 5.3 37 2-38 268-304 (578)
23 COG0724 RNA-binding proteins ( 96.5 0.0041 9E-08 48.7 4.4 38 2-39 156-193 (306)
24 TIGR01622 SF-CC1 splicing fact 96.4 0.0042 9E-08 56.8 4.8 37 3-39 228-264 (457)
25 COG5175 MOT2 Transcriptional r 96.4 0.003 6.5E-08 60.2 3.7 62 6-73 168-230 (480)
26 TIGR01642 U2AF_lg U2 snRNP aux 96.2 0.0067 1.5E-07 56.2 4.9 36 3-38 337-372 (509)
27 TIGR01659 sex-lethal sex-letha 96.0 0.011 2.4E-07 54.6 5.1 37 3-39 235-273 (346)
28 TIGR01628 PABP-1234 polyadenyl 95.7 0.013 2.8E-07 55.6 4.6 37 3-39 42-78 (562)
29 KOG0123 Polyadenylate-binding 95.7 0.012 2.6E-07 55.0 4.4 36 3-39 116-151 (369)
30 KOG0148 Apoptosis-promoting RN 95.6 0.012 2.7E-07 54.5 3.6 35 3-37 104-138 (321)
31 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.5 0.025 5.5E-07 49.7 5.3 36 3-38 131-168 (352)
32 PLN03120 nucleic acid binding 95.4 0.022 4.8E-07 51.8 4.6 36 3-39 43-78 (260)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 95.4 0.023 4.9E-07 53.8 4.8 37 3-39 38-76 (481)
34 KOG0127 Nucleolar protein fibr 95.2 0.024 5.2E-07 56.7 4.5 45 2-46 157-202 (678)
35 TIGR01645 half-pint poly-U bin 95.1 0.021 4.6E-07 57.1 3.9 36 2-37 148-183 (612)
36 KOG0108 mRNA cleavage and poly 95.0 0.026 5.7E-07 54.4 4.0 39 2-40 59-97 (435)
37 KOG4208 Nucleolar RNA-binding 94.9 0.03 6.4E-07 49.9 3.8 39 3-41 92-130 (214)
38 TIGR01642 U2AF_lg U2 snRNP aux 94.6 0.029 6.4E-07 51.9 3.3 33 3-36 223-255 (509)
39 TIGR01648 hnRNP-R-Q heterogene 94.5 0.061 1.3E-06 53.5 5.3 35 3-37 99-134 (578)
40 KOG0114 Predicted RNA-binding 94.3 0.056 1.2E-06 44.4 3.8 37 3-39 57-93 (124)
41 TIGR01645 half-pint poly-U bin 94.0 0.076 1.7E-06 53.2 5.0 37 2-38 245-281 (612)
42 KOG4206 Spliceosomal protein s 93.4 0.077 1.7E-06 47.4 3.3 37 2-38 51-87 (221)
43 KOG0109 RNA-binding protein LA 93.3 0.06 1.3E-06 50.5 2.7 37 3-39 112-148 (346)
44 KOG4660 Protein Mei2, essentia 92.7 0.055 1.2E-06 53.7 1.6 36 1-36 110-145 (549)
45 KOG0111 Cyclophilin-type pepti 92.7 0.095 2.1E-06 47.9 2.9 37 3-39 52-89 (298)
46 KOG0121 Nuclear cap-binding pr 92.5 0.14 3.1E-06 43.4 3.6 45 3-51 78-122 (153)
47 KOG0117 Heterogeneous nuclear 91.5 0.27 5.8E-06 48.4 4.6 44 3-52 125-169 (506)
48 PLN03121 nucleic acid binding 91.5 0.28 6.1E-06 44.4 4.5 35 4-39 45-79 (243)
49 KOG0148 Apoptosis-promoting RN 91.4 0.23 5E-06 46.3 4.0 36 2-37 199-234 (321)
50 PF11608 Limkain-b1: Limkain b 91.3 0.34 7.3E-06 38.2 4.2 37 4-40 40-76 (90)
51 KOG0415 Predicted peptidyl pro 91.1 0.2 4.4E-06 48.4 3.3 68 5-72 283-356 (479)
52 KOG0131 Splicing factor 3b, su 91.0 0.27 5.9E-06 43.5 3.7 38 2-39 138-175 (203)
53 KOG0105 Alternative splicing f 90.6 0.2 4.4E-06 44.8 2.7 38 2-39 44-81 (241)
54 KOG0123 Polyadenylate-binding 90.1 0.36 7.9E-06 45.3 4.1 36 3-38 37-72 (369)
55 KOG0130 RNA-binding protein RB 89.4 0.32 7E-06 41.7 2.8 38 2-39 113-150 (170)
56 PLN03213 repressor of silencin 88.9 0.45 9.7E-06 47.8 3.9 36 3-38 48-85 (759)
57 KOG0110 RNA-binding protein (R 88.8 0.53 1.2E-05 48.2 4.3 36 3-38 9-44 (725)
58 KOG0124 Polypyrimidine tract-b 87.4 0.52 1.1E-05 45.9 3.1 37 1-37 153-189 (544)
59 KOG0117 Heterogeneous nuclear 86.7 0.88 1.9E-05 44.9 4.3 40 4-43 294-334 (506)
60 KOG2068 MOT2 transcription fac 86.5 0.23 5.1E-06 46.7 0.3 58 6-69 128-186 (327)
61 KOG2494 C3H1-type Zn-finger pr 86.0 0.25 5.5E-06 46.5 0.3 24 44-67 36-60 (331)
62 KOG1040 Polyadenylation factor 85.8 0.32 6.9E-06 45.5 0.8 27 42-68 74-100 (325)
63 KOG4209 Splicing factor RNPS1, 85.3 1 2.2E-05 40.0 3.7 37 1-38 141-177 (231)
64 KOG0125 Ataxin 2-binding prote 85.1 0.89 1.9E-05 43.4 3.4 35 3-37 136-170 (376)
65 KOG0106 Alternative splicing f 84.8 0.43 9.4E-06 42.4 1.2 36 2-37 34-69 (216)
66 KOG0131 Splicing factor 3b, su 84.6 0.85 1.9E-05 40.5 2.8 37 3-39 51-87 (203)
67 KOG0145 RNA-binding protein EL 83.5 1.3 2.8E-05 41.6 3.7 39 2-40 82-121 (360)
68 KOG4212 RNA-binding protein hn 82.8 1.4 3E-05 43.8 3.7 37 3-39 86-122 (608)
69 PF11767 SET_assoc: Histone ly 80.0 2.4 5.1E-05 31.3 3.3 30 6-35 36-65 (66)
70 KOG0147 Transcriptional coacti 79.7 2.2 4.8E-05 42.7 4.0 36 3-38 320-355 (549)
71 KOG0144 RNA-binding protein CU 78.9 1.6 3.5E-05 43.0 2.8 36 3-38 165-203 (510)
72 PF05172 Nup35_RRM: Nup53/35/4 75.6 3.5 7.5E-05 32.5 3.3 29 5-34 56-84 (100)
73 KOG0145 RNA-binding protein EL 74.6 4.3 9.3E-05 38.3 4.1 37 3-39 169-207 (360)
74 KOG0106 Alternative splicing f 74.5 1.8 4E-05 38.5 1.7 34 2-35 132-165 (216)
75 KOG0226 RNA-binding proteins [ 74.2 2.8 6.1E-05 38.9 2.8 35 3-37 232-266 (290)
76 KOG0113 U1 small nuclear ribon 73.0 5.3 0.00012 37.8 4.4 43 3-45 143-188 (335)
77 COG5252 Uncharacterized conser 72.2 0.94 2E-05 41.8 -0.7 40 42-81 82-122 (299)
78 COG5152 Uncharacterized conser 71.4 2.1 4.5E-05 38.8 1.3 80 7-86 87-186 (259)
79 PF08777 RRM_3: RNA binding mo 71.1 4.5 9.8E-05 31.6 3.0 22 5-26 39-60 (105)
80 KOG0146 RNA-binding protein ET 70.9 3.4 7.3E-05 39.1 2.6 23 3-25 60-82 (371)
81 KOG2591 c-Mpl binding protein, 70.1 2.3 4.9E-05 43.2 1.3 68 4-71 213-290 (684)
82 KOG0127 Nucleolar protein fibr 70.1 3.5 7.5E-05 41.9 2.6 36 3-38 47-82 (678)
83 KOG1847 mRNA splicing factor [ 68.2 3.8 8.3E-05 42.4 2.5 13 152-164 811-823 (878)
84 KOG4368 Predicted RNA binding 68.1 19 0.00041 37.1 7.2 12 87-98 605-616 (757)
85 KOG1763 Uncharacterized conser 66.9 1.9 4.2E-05 40.7 0.1 37 36-72 82-119 (343)
86 PF14605 Nup35_RRM_2: Nup53/35 66.8 4.3 9.3E-05 28.1 1.8 16 5-20 38-53 (53)
87 PF04847 Calcipressin: Calcipr 65.4 7.5 0.00016 33.5 3.4 40 4-43 32-73 (184)
88 KOG1457 RNA binding protein (c 64.2 9.9 0.00021 35.1 4.1 34 5-38 79-115 (284)
89 KOG1677 CCCH-type Zn-finger pr 63.9 4.1 8.9E-05 36.4 1.6 31 41-71 173-204 (332)
90 PF07576 BRAP2: BRCA1-associat 63.3 9.4 0.0002 30.5 3.4 24 6-29 57-80 (110)
91 KOG2314 Translation initiation 62.4 6.4 0.00014 40.2 2.8 29 3-31 105-133 (698)
92 PF03439 Spt5-NGN: Early trans 60.0 10 0.00022 28.4 2.9 27 1-27 42-68 (84)
93 KOG1813 Predicted E3 ubiquitin 58.4 3.4 7.3E-05 38.9 0.1 30 39-68 180-210 (313)
94 KOG1190 Polypyrimidine tract-b 57.3 24 0.00052 35.0 5.6 46 5-50 337-382 (492)
95 COG5084 YTH1 Cleavage and poly 56.8 6.4 0.00014 36.5 1.6 31 42-72 101-131 (285)
96 PF14608 zf-CCCH_2: Zinc finge 54.5 8.5 0.00018 21.9 1.3 18 48-67 2-19 (19)
97 KOG0144 RNA-binding protein CU 53.9 12 0.00026 37.2 3.0 28 3-30 76-104 (510)
98 PF08952 DUF1866: Domain of un 53.2 21 0.00046 30.3 4.0 41 4-46 71-111 (146)
99 PF03880 DbpA: DbpA RNA bindin 53.0 9.2 0.0002 27.6 1.6 30 7-37 44-73 (74)
100 KOG0109 RNA-binding protein LA 50.6 18 0.0004 34.4 3.6 34 6-39 39-72 (346)
101 KOG0126 Predicted RNA-binding 49.4 4.3 9.4E-05 36.3 -0.7 36 3-38 77-112 (219)
102 PF04059 RRM_2: RNA recognitio 45.9 41 0.00088 26.4 4.3 27 3-29 45-71 (97)
103 KOG0835 Cyclin L [General func 45.8 36 0.00079 32.8 4.8 27 2-29 172-198 (367)
104 KOG4368 Predicted RNA binding 43.7 23 0.00049 36.6 3.2 7 163-169 684-690 (757)
105 KOG2296 Integral membrane prot 36.6 26 0.00057 36.1 2.4 55 152-207 563-617 (673)
106 KOG4661 Hsp27-ERE-TATA-binding 36.3 33 0.00072 35.6 3.1 33 6-38 450-482 (940)
107 KOG0132 RNA polymerase II C-te 35.1 51 0.0011 35.0 4.2 20 166-185 830-849 (894)
108 KOG1492 C3H1-type Zn-finger pr 34.7 25 0.00054 32.7 1.8 42 29-71 218-259 (377)
109 KOG0149 Predicted RNA-binding 33.8 34 0.00074 31.5 2.5 37 3-53 54-90 (247)
110 PF09341 Pcc1: Transcription f 32.6 57 0.0012 23.5 3.1 22 3-24 2-23 (76)
111 PLN02435 probable UDP-N-acetyl 32.3 32 0.00069 34.1 2.2 36 10-45 427-473 (493)
112 PF06373 CART: Cocaine and amp 32.2 19 0.00042 27.5 0.6 14 55-68 58-71 (73)
113 PRK05528 methionine sulfoxide 30.9 59 0.0013 27.5 3.3 38 8-46 92-129 (156)
114 PF06970 RepA_N: Replication i 30.7 33 0.00071 25.7 1.6 15 3-17 46-60 (76)
115 PF11823 DUF3343: Protein of u 30.4 1.1E+02 0.0023 21.9 4.2 43 4-51 2-44 (73)
116 PF08544 GHMP_kinases_C: GHMP 30.3 49 0.0011 23.0 2.4 25 4-28 60-84 (85)
117 KOG1040 Polyadenylation factor 30.0 23 0.00049 33.4 0.8 52 33-84 92-146 (325)
118 PF10309 DUF2414: Protein of u 28.9 50 0.0011 24.2 2.2 18 6-23 45-62 (62)
119 KOG4285 Mitotic phosphoprotein 28.7 67 0.0015 30.8 3.6 37 5-43 234-270 (350)
120 KOG1492 C3H1-type Zn-finger pr 27.9 26 0.00057 32.6 0.8 22 46-67 207-229 (377)
121 KOG0153 Predicted RNA-binding 26.7 29 0.00064 33.5 0.9 30 45-74 161-190 (377)
122 KOG2416 Acinus (induces apopto 26.6 70 0.0015 33.2 3.5 48 2-49 480-530 (718)
123 KOG2888 Putative RNA binding p 26.4 32 0.0007 33.5 1.1 8 4-11 161-168 (453)
124 KOG4211 Splicing factor hnRNP- 26.2 55 0.0012 32.9 2.7 44 3-47 145-188 (510)
125 KOG4454 RNA binding protein (R 26.1 37 0.00081 31.3 1.4 33 5-37 51-83 (267)
126 KOG4211 Splicing factor hnRNP- 23.0 67 0.0015 32.3 2.6 20 3-22 49-68 (510)
127 TIGR00401 msrA methionine-S-su 22.8 67 0.0015 26.9 2.2 37 8-46 96-137 (149)
128 KOG1995 Conserved Zn-finger pr 22.4 57 0.0012 31.4 1.9 35 3-37 116-150 (351)
129 KOG1548 Transcription elongati 22.2 1E+02 0.0023 29.9 3.6 38 1-38 181-218 (382)
130 PRK13014 methionine sulfoxide 21.6 76 0.0016 27.7 2.4 62 9-70 105-170 (186)
131 PTZ00339 UDP-N-acetylglucosami 21.5 71 0.0015 31.6 2.4 36 11-46 419-465 (482)
132 KOG1456 Heterogeneous nuclear 21.5 71 0.0015 31.6 2.4 20 6-25 162-181 (494)
133 PF01693 Cauli_VI: Caulimoviru 21.1 1.1E+02 0.0024 20.2 2.6 17 3-19 28-44 (44)
134 COG2039 Pcp Pyrrolidone-carbox 20.9 73 0.0016 28.7 2.2 31 15-46 18-48 (207)
135 KOG4019 Calcineurin-mediated s 20.3 1.4E+02 0.003 26.7 3.8 36 3-38 51-87 (193)
136 KOG1677 CCCH-type Zn-finger pr 20.1 50 0.0011 29.5 1.0 34 39-72 126-161 (332)
No 1
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=259.02 Aligned_cols=95 Identities=61% Similarity=1.091 Sum_probs=87.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecccccCcCCCCCCCCcccccCCCHHHHHHHHh
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFG 80 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~Lf~ 80 (216)
||+|||||+|..+++|++|++.||+|||+|+||+|||+|||+|+||||+||+.+.|++|++|||||++.++++|.+.|+.
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~ 187 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICGQFERTECSRGGACNFMHVKRLSRSLRRELYG 187 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhcccccccCCCCCcCcchhhhhhhHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC-CCCCCCCCC
Q 027939 81 RYRRRH-SRSRSRSRS 95 (216)
Q Consensus 81 ~~~~~~-~~~~~~s~s 95 (216)
.+.+.+ .++++++++
T Consensus 188 ~~~~~~~~~sra~~~~ 203 (260)
T KOG2202|consen 188 RQRKRYPRRSRARARE 203 (260)
T ss_pred hhhccccccccccccc
Confidence 976655 444444443
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.98 E-value=2.8e-10 Score=110.26 Aligned_cols=42 Identities=38% Similarity=0.722 Sum_probs=40.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
|+|||+|.++++|..|+++||||||+||.|+|.|.|+++|..
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~ 532 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHS 532 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhh
Confidence 999999999999999999999999999999999999999853
No 3
>smart00361 RRM_1 RNA recognition motif.
Probab=98.83 E-value=4.5e-09 Score=74.56 Aligned_cols=36 Identities=42% Similarity=0.835 Sum_probs=33.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEE
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 36 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aE 36 (216)
|+.|++||.|.++++|.+|++.|||+||+|++|.|+
T Consensus 35 ~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 35 HKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568999999999999999999999999999999874
No 4
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.65 E-value=5.4e-08 Score=65.55 Aligned_cols=35 Identities=37% Similarity=0.787 Sum_probs=33.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
|.+||+|.+.++|..|++.|||.+|.|++|.++|+
T Consensus 22 ~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 22 GFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 88999999999999999999999999999999985
No 5
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.47 E-value=1.6e-07 Score=87.83 Aligned_cols=46 Identities=28% Similarity=0.555 Sum_probs=42.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-cCCCcccc
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDFREA 46 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-PVtdF~eA 46 (216)
|..|.|-|.|.+.++|+.||+.|+||||+||+|+|+++ .-|.|...
T Consensus 312 hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 312 HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTE 358 (382)
T ss_pred CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeee
Confidence 78899999999999999999999999999999999998 66777544
No 6
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=2.8e-05 Score=67.65 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=36.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|+.||+|++..+|++|+..|+|+-|+|..|.|||+.
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46999999999999999999999999999999999986
No 7
>smart00360 RRM RNA recognition motif.
Probab=97.58 E-value=0.00011 Score=47.34 Aligned_cols=34 Identities=41% Similarity=0.736 Sum_probs=31.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEE
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 36 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aE 36 (216)
.|.+||+|.+.++|..|++.|++..|.|+.|.++
T Consensus 38 ~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 38 KGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5899999999999999999999999999999863
No 8
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.56 E-value=0.00017 Score=46.97 Aligned_cols=35 Identities=43% Similarity=0.831 Sum_probs=33.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|.+||.|.+.++|..|++.|++.+|.|+.|.+.+
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 68999999999999999999999999999998864
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=97.53 E-value=0.00016 Score=46.82 Aligned_cols=35 Identities=37% Similarity=0.710 Sum_probs=32.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEE
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 36 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aE 36 (216)
..|.+||.|.+.++|+.|++.|+|..|.|++|.++
T Consensus 38 ~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 38 SKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 35899999999999999999999999999999863
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.51 E-value=0.00015 Score=49.73 Aligned_cols=32 Identities=41% Similarity=0.620 Sum_probs=30.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeE
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPII 34 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~ 34 (216)
.|.+||+|.++++|..|++.++|.+|.|+.|.
T Consensus 39 ~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 39 RGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 58999999999999999999999999999984
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.49 E-value=0.0003 Score=61.67 Aligned_cols=36 Identities=28% Similarity=0.499 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++||..|||.++.|++|.+++.
T Consensus 45 ~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 45 LGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred ceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 589999999999999999999999999999999986
No 12
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.47 E-value=0.00019 Score=58.27 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=34.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|..||.|.++++|++|++.|||..++|++|.+++.
T Consensus 75 ~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3699999999999999999999999999999999874
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.47 E-value=0.00018 Score=48.18 Aligned_cols=33 Identities=39% Similarity=0.655 Sum_probs=30.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeE
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPII 34 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~ 34 (216)
..|.+||+|.+.++|++|++.|+|--++|++|.
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 358899999999999999999999999999984
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.41 E-value=0.00037 Score=64.28 Aligned_cols=36 Identities=28% Similarity=0.543 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++||+.|||..+.+++|.+++.
T Consensus 149 rGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 149 FGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 489999999999999999999999999999999985
No 15
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.23 E-value=0.00021 Score=42.01 Aligned_cols=26 Identities=23% Similarity=0.732 Sum_probs=23.3
Q ss_pred cccceecccccCcCCCCCCCCccccc
Q 027939 43 FREATCRQYEENTCNRGGYCNFMHLK 68 (216)
Q Consensus 43 F~eA~Crq~~~g~C~RGg~CNFmHvk 68 (216)
+++.+|..|..|.|.+|..|.|+|..
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 56779999999999999999999963
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.10 E-value=0.00061 Score=64.53 Aligned_cols=36 Identities=33% Similarity=0.642 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|++||.|.++++|.+|+..|||.+|+|++|.|.+.
T Consensus 326 ~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 326 RGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 589999999999999999999999999999999985
No 17
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.01 E-value=0.0017 Score=65.56 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=61.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecccccCcCCCCCCCCcccccCCCHHH----HHHH
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDL----RRQL 78 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L----~~~L 78 (216)
.|++||+|.++++|..|+++|+|--.+|..|.+.+++ .=..++-+ -+|+.-..|+=|||+.+|-+. .++|
T Consensus 560 mGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~--~k~~~~~g----K~~~~kk~~tKIlVRNipFeAt~rEVr~L 633 (725)
T KOG0110|consen 560 MGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE--NKPASTVG----KKKSKKKKGTKILVRNIPFEATKREVRKL 633 (725)
T ss_pred cceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc--Cccccccc----cccccccccceeeeeccchHHHHHHHHHH
Confidence 3999999999999999999999999999999999999 22222222 578888889999999998654 5577
Q ss_pred Hhhh
Q 027939 79 FGRY 82 (216)
Q Consensus 79 f~~~ 82 (216)
|..|
T Consensus 634 F~aF 637 (725)
T KOG0110|consen 634 FTAF 637 (725)
T ss_pred Hhcc
Confidence 7775
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.00 E-value=0.0037 Score=56.28 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|+.||.|.+..+|++|+.+|.|+-.+|+-|.|+|.
T Consensus 55 RgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 55 RGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 699999999999999999999999999999988774
No 19
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.92 E-value=0.00022 Score=43.61 Aligned_cols=25 Identities=32% Similarity=0.769 Sum_probs=19.4
Q ss_pred cccceeccccc-CcCCCCCCCCcccc
Q 027939 43 FREATCRQYEE-NTCNRGGYCNFMHL 67 (216)
Q Consensus 43 F~eA~Crq~~~-g~C~RGg~CNFmHv 67 (216)
|+..+|..|.. |.|+.|..|+|+|.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 56789998876 99999999999996
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.88 E-value=0.0033 Score=57.50 Aligned_cols=37 Identities=43% Similarity=0.703 Sum_probs=33.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 40 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPV 40 (216)
.|..||+|.++++|.+||. |+|..|.|++|.+.++..
T Consensus 131 kg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 131 KGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred ceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 5899999999999999996 999999999999998653
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=96.76 E-value=0.0058 Score=57.74 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|+.|+..|||.-+.|++|.++++.
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4899999999999999999999999999999999973
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=96.65 E-value=0.0027 Score=62.84 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=35.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+.|+.||.|.+.++|++|++.|||..|.|++|.|++.
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4689999999999999999999999999999999997
No 23
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.49 E-value=0.0041 Score=48.67 Aligned_cols=38 Identities=34% Similarity=0.616 Sum_probs=35.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||.|.++++|..|+..|+|-+|.|++|.+.+..
T Consensus 156 ~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 156 SRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred cCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 46999999999999999999999999999999999964
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.43 E-value=0.0042 Score=56.85 Aligned_cols=37 Identities=38% Similarity=0.630 Sum_probs=34.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|.+||.|.+.++|.+|++.|||-.+.|++|.+.|.-
T Consensus 228 ~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 228 KGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5899999999999999999999999999999999953
No 25
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.40 E-value=0.003 Score=60.25 Aligned_cols=62 Identities=27% Similarity=0.660 Sum_probs=52.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecccccC-cCCCCCCCCcccccCCCHH
Q 027939 6 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN-TCNRGGYCNFMHLKRISRD 73 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~g-~C~RGg~CNFmHvk~~sr~ 73 (216)
|||.|.+.|+|+.||.++.|-+.+||.|.|.|-- |.| |..|..+ .|+- ..|=|||--.+-.+
T Consensus 168 vYITy~~kedAarcIa~vDgs~~DGr~lkatYGT-TKY----CtsYLRn~~CpN-p~CMyLHEpg~e~D 230 (480)
T COG5175 168 VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT-TKY----CTSYLRNAVCPN-PDCMYLHEPGPEKD 230 (480)
T ss_pred EEEEecchHHHHHHHHHhccccccCceEeeecCc-hHH----HHHHHcCCCCCC-CCeeeecCCCcccc
Confidence 7999999999999999999999999999999965 554 8888776 5775 57999997666543
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.22 E-value=0.0067 Score=56.16 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|.+||.|.+.++|..|+..|||-.+.|+.|.+++.
T Consensus 337 ~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 337 KGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 589999999999999999999999999999999985
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.96 E-value=0.011 Score=54.59 Aligned_cols=37 Identities=27% Similarity=0.546 Sum_probs=32.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfsP 39 (216)
.|..||+|.+.++|++||+.||+..+.| ++|.|.|.-
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 4899999999999999999999999877 688877754
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=95.74 E-value=0.013 Score=55.63 Aligned_cols=37 Identities=32% Similarity=0.580 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|++|+..||+-.+.|++|.+.++.
T Consensus 42 ~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 42 LGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 4899999999999999999999999999999998863
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.012 Score=55.01 Aligned_cols=36 Identities=36% Similarity=0.617 Sum_probs=33.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|. ||+|+++++|.+|+..|||..+.|++|.|..-.
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 577 999999999999999999999999999997654
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.012 Score=54.53 Aligned_cols=35 Identities=26% Similarity=0.556 Sum_probs=32.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|--||-|...++|+.||..|||.|.++|.|....
T Consensus 104 KGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 104 KGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 47889999999999999999999999999998544
No 31
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.51 E-value=0.025 Score=49.67 Aligned_cols=36 Identities=36% Similarity=0.700 Sum_probs=32.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfs 38 (216)
.|..||+|.+.++|+.|++.|||..+.| .+|.+.+.
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 5899999999999999999999999988 67777775
No 32
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.40 E-value=0.022 Score=51.78 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=33.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|+.||.|.++++|+.|+. |||..+.|++|.++..+
T Consensus 43 ~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 43 SQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4899999999999999995 99999999999999875
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=95.36 E-value=0.023 Score=53.78 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=33.8
Q ss_pred cceEEEEeCCHHHHHHHHHHh--cCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSL--SGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~L--NGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|++.| |+-.+.|++|.++|+.
T Consensus 38 k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 38 KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 378999999999999999974 7899999999999974
No 34
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=95.18 E-value=0.024 Score=56.70 Aligned_cols=45 Identities=31% Similarity=0.619 Sum_probs=40.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe-ccCCCcccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF-SPVTDFREA 46 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf-sPVtdF~eA 46 (216)
|.|+.||+|....+|++|++.|||--++||+|-|.+ ++-..|..+
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~t 202 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDT 202 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccccc
Confidence 679999999999999999999999999999999998 476677554
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=95.10 E-value=0.021 Score=57.06 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=34.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
..|..||.|.++++|..|++.|||..+.|+.|.+..
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 369999999999999999999999999999999975
No 36
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=94.99 E-value=0.026 Score=54.37 Aligned_cols=39 Identities=31% Similarity=0.604 Sum_probs=36.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccC
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 40 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPV 40 (216)
..|+.|+.|.++++|+.|+..|||.-|.||+|.++|-.-
T Consensus 59 ~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 59 PKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 469999999999999999999999999999999998653
No 37
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=94.89 E-value=0.03 Score=49.86 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=36.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 41 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVt 41 (216)
.|..||+|++++.|.-|...||+=.|-|+.|.|-|+|-.
T Consensus 92 KgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 92 KGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred CceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 578999999999999999999999999999999999855
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=94.63 E-value=0.029 Score=51.95 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=30.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEE
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 36 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aE 36 (216)
.|+.||.|.++++|..|| +|||-.|.|++|.+.
T Consensus 223 kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~ 255 (509)
T TIGR01642 223 KNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIR 255 (509)
T ss_pred CCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEec
Confidence 489999999999999999 699999999999875
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.50 E-value=0.061 Score=53.47 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=30.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccC-CeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYa-GR~I~aEf 37 (216)
.|+.||+|.++++|++||+.||+..+. |+.|.+..
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 589999999999999999999999884 78776543
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.27 E-value=0.056 Score=44.42 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||-|++..+|.+|+..|+|-.++++.|.|-|+.
T Consensus 57 rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 57 RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 5899999999999999999999999999999999874
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=94.04 E-value=0.076 Score=53.20 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=34.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|+.||.|.+.++|.+|+..|||-.++|+.|.+...
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3689999999999999999999999999999999874
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.38 E-value=0.077 Score=47.44 Aligned_cols=37 Identities=32% Similarity=0.676 Sum_probs=35.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
|+|-.+|-|.+++.|..|+.+|+|--|=|+++.+.|.
T Consensus 51 mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 51 MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 7899999999999999999999999999999999995
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=93.33 E-value=0.06 Score=50.51 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.+.+||+|.-.++|..|++.|+++-|.|+++++++|-
T Consensus 112 kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 112 KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred cceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 4789999999999999999999999999999999974
No 44
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=0.055 Score=53.70 Aligned_cols=36 Identities=39% Similarity=0.499 Sum_probs=32.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEE
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 36 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aE 36 (216)
|-.|.|||.|-++.+|+.|+++||++-++|+.|.+.
T Consensus 110 ~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 110 NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 346899999999999999999999999999999843
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.095 Score=47.92 Aligned_cols=37 Identities=35% Similarity=0.546 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-c
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-P 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-P 39 (216)
+|+.||.|...|+|++||..||+--.-||.|.+.|- |
T Consensus 52 RgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 52 RGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred cceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 699999999999999999999999999999999996 5
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=92.53 E-value=0.14 Score=43.38 Aligned_cols=45 Identities=36% Similarity=0.660 Sum_probs=38.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceeccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQY 51 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~ 51 (216)
-|+.||.|-..++|+.|++.|||--.+-++|.+.+.+ -|.|. +||
T Consensus 78 CGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~--GF~eG--RQy 122 (153)
T KOG0121|consen 78 CGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA--GFVEG--RQY 122 (153)
T ss_pred cceEEEEEecchhHHHHHHHhccCcccccceeeeccc--cchhh--hhh
Confidence 4899999999999999999999999999999999865 45443 454
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=91.52 E-value=0.27 Score=48.36 Aligned_cols=44 Identities=32% Similarity=0.449 Sum_probs=38.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc-CCeeeEEEeccCCCcccceecccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY-AGRPIIVDFSPVTDFREATCRQYE 52 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY-aGR~I~aEfsPVtdF~eA~Crq~~ 52 (216)
+|-.||.|.+.++|+.||+.||+--+ .||.|-|-.| .|.||+|.
T Consensus 125 RGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S------van~RLFi 169 (506)
T KOG0117|consen 125 RGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS------VANCRLFI 169 (506)
T ss_pred cceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe------eecceeEe
Confidence 58899999999999999999999644 8999998775 68999985
No 48
>PLN03121 nucleic acid binding protein; Provisional
Probab=91.51 E-value=0.28 Score=44.42 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=32.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
|+.||.|.++++|+.|+ .|||--+.+++|.++.++
T Consensus 45 gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 45 CTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred eEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 78999999999999998 899999999999988764
No 49
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=91.44 E-value=0.23 Score=46.33 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=34.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.+|..||+|.+.|.|+.||..|||--.+|.+|.|..
T Consensus 199 ~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 199 DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred ccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 468999999999999999999999999999999976
No 50
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.30 E-value=0.34 Score=38.22 Aligned_cols=37 Identities=38% Similarity=0.541 Sum_probs=29.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccC
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 40 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPV 40 (216)
|-..|+|.+.+.|+.|.+-|+|.--=|..|.+.|.|.
T Consensus 40 ~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 40 GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5689999999999999999999999999999999975
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.2 Score=48.36 Aligned_cols=68 Identities=22% Similarity=0.433 Sum_probs=52.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-cCCC--ccccee---cccccCcCCCCCCCCcccccCCCH
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTD--FREATC---RQYEENTCNRGGYCNFMHLKRISR 72 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-PVtd--F~eA~C---rq~~~g~C~RGg~CNFmHvk~~sr 72 (216)
-.||+|.+.+++++|+=.|.+=..+-+.|+|.|| .|.. |+.--- ..+-.-.|..+..-+|+|-.++.+
T Consensus 283 yaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~~~~~~d~~~~d~~~~~~~k~~~kd~~~~ 356 (479)
T KOG0415|consen 283 YAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKGSQKETDHRAKDCVGGPSSKFIHKDQNRP 356 (479)
T ss_pred eeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccccccccccchhhhccccCCcccchhccCCCC
Confidence 3689999999999999999999999999999998 4444 432111 112234699999999999988763
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=90.96 E-value=0.27 Score=43.51 Aligned_cols=38 Identities=24% Similarity=0.507 Sum_probs=35.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||-|.+.+.|.+|+.+|||.+.+-++|+++|--
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 45789999999999999999999999999999999853
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=90.62 E-value=0.2 Score=44.81 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=35.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
+..+.||+|++..+|+.||..-+|==|+|-.|.+||--
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45789999999999999999999999999999999953
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=90.14 E-value=0.36 Score=45.29 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|-.||.|.++++|++||+.||.--+.|++|...++
T Consensus 37 lgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 37 LGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred cceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 588999999999999999999999999999998876
No 55
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=89.39 E-value=0.32 Score=41.71 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=34.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
+.|-..|+|++.++|++|+.+|||--.-|.+|.+.++-
T Consensus 113 ~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 113 VKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred ccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 56889999999999999999999999999999988754
No 56
>PLN03213 repressor of silencing 3; Provisional
Probab=88.94 E-value=0.45 Score=47.84 Aligned_cols=36 Identities=11% Similarity=0.333 Sum_probs=32.9
Q ss_pred cceEEEEeCCH--HHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREE--EQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~e--e~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+|+.||.|..+ .++.+||..|||--+.|++|.++.-
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 59999999987 6899999999999999999998763
No 57
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.77 E-value=0.53 Score=48.23 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+++.||=|.++++|++||..+|+-|++-..|+||++
T Consensus 9 R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~ 44 (725)
T KOG0110|consen 9 RRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFC 44 (725)
T ss_pred eeeeEeeeccHHHHHHHHHHhhccccccceEEEEeh
Confidence 578999999999999999999999999999999986
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=87.37 E-value=0.52 Score=45.92 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=34.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
|-.|+.||+|+-+|.|+-|++.|||-..+||-|.+-.
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3479999999999999999999999999999999874
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=86.65 E-value=0.88 Score=44.86 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=36.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-cCCCc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDF 43 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-PVtdF 43 (216)
-..||.|.+-++|.+|++.|||.-.+|-+|.|.|- ||.+=
T Consensus 294 DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 294 DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 45799999999999999999999999999999996 77553
No 60
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.47 E-value=0.23 Score=46.67 Aligned_cols=58 Identities=28% Similarity=0.649 Sum_probs=46.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceeccccc-CcCCCCCCCCcccccC
Q 027939 6 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEE-NTCNRGGYCNFMHLKR 69 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~-g~C~RGg~CNFmHvk~ 69 (216)
|||.|..+++|..||...+|=.++|+.|.|.|-- |.| |--+.. -.|+... |=|||=.-
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gt-tky----cs~~l~~~~c~~~~-cmylhe~~ 186 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGT-TKY----CSFYLRNDICQNPD-CMYLHEIG 186 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCC-Ccc----hhHHhhhhcccCcc-cccccccc
Confidence 8999999999999999999999999999998842 334 444544 4688766 99999643
No 61
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=85.96 E-value=0.25 Score=46.50 Aligned_cols=24 Identities=42% Similarity=0.946 Sum_probs=18.9
Q ss_pred ccceecccccCcCCCCCC-CCcccc
Q 027939 44 REATCRQYEENTCNRGGY-CNFMHL 67 (216)
Q Consensus 44 ~eA~Crq~~~g~C~RGg~-CNFmHv 67 (216)
..++||+|..|+|.||.. |-|-|.
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCC
Confidence 357888888888888886 888886
No 62
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=85.80 E-value=0.32 Score=45.52 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=25.2
Q ss_pred CcccceecccccCcCCCCCCCCccccc
Q 027939 42 DFREATCRQYEENTCNRGGYCNFMHLK 68 (216)
Q Consensus 42 dF~eA~Crq~~~g~C~RGg~CNFmHvk 68 (216)
.+..-+|+-|.+|.|.+|..|+|||..
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 788999999999999999999999964
No 63
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=85.32 E-value=1 Score=40.02 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=35.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
|+.|..||.|.+.+.++.|++ |+|--+-|++|.+++.
T Consensus 141 ~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 141 HPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 678999999999999999999 9999999999999884
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=85.14 E-value=0.89 Score=43.42 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=33.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|+-||.|++.++|++|-..|||--.-||.|.|..
T Consensus 136 KGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 136 KGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 58999999999999999999999999999998875
No 65
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=84.83 E-value=0.43 Score=42.44 Aligned_cols=36 Identities=25% Similarity=0.520 Sum_probs=32.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
+.|+.||.|.++.+|..||..|||.-|.|..|.+|+
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 458889999999999999999999999999977666
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=84.57 E-value=0.85 Score=40.45 Aligned_cols=37 Identities=38% Similarity=0.470 Sum_probs=33.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
+|..||+|.++|+|+=|++.||+=-.=||||.+.-+.
T Consensus 51 qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 51 QGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred cceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 6999999999999999999999988889999876643
No 67
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=83.51 E-value=1.3 Score=41.61 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=35.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-cC
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PV 40 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-PV 40 (216)
-.|--||.|.++++|++|+..|||--.--+.|.+.|- |.
T Consensus 82 SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 82 SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 3577899999999999999999999999999999995 53
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=82.75 E-value=1.4 Score=43.80 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=34.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
+|+.-|+|+++|.+++|++.||---..||+|.|.=.|
T Consensus 86 rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 86 RGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 6899999999999999999999999999999987655
No 69
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.04 E-value=2.4 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=26.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeeeEE
Q 027939 6 VYVQFREEEQAARALKSLSGRFYAGRPIIV 35 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYaGR~I~a 35 (216)
.||-|.+..+|++|..+.+|+-|-+-.|..
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 699999999999999999999887665543
No 70
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=79.66 E-value=2.2 Score=42.69 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=32.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|+-||+|.+.++|.+|+..|||=-.||++|.|-.+
T Consensus 320 kgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 320 KGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 488999999999999999999997789999997664
No 71
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=78.91 E-value=1.6 Score=43.01 Aligned_cols=36 Identities=33% Similarity=0.644 Sum_probs=29.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc---CCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY---aGR~I~aEfs 38 (216)
+|..||+|.+.+.|..||++|||-+= .--||+|-|-
T Consensus 165 RGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 165 RGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred cceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 59999999999999999999999763 3456666663
No 72
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=75.59 E-value=3.5 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=25.9
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeE
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPII 34 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~ 34 (216)
-|.|+|.+..+|.+||+. ||.-|+|-.|.
T Consensus 56 Wi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 56 WIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp EEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred EEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 589999999999999987 99999997664
No 73
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=74.59 E-value=4.3 Score=38.25 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=32.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfsP 39 (216)
.|.-||+|..-++|+.||+.|||--=.| .||++.|..
T Consensus 169 rGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 169 RGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 5889999999999999999999998766 689998863
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=74.54 E-value=1.8 Score=38.52 Aligned_cols=34 Identities=41% Similarity=0.631 Sum_probs=32.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEE
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 35 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~a 35 (216)
+.+..+|+|.++++|..|+..|+|-=+.|+.|.+
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4577899999999999999999999999999998
No 75
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=74.19 E-value=2.8 Score=38.94 Aligned_cols=35 Identities=29% Similarity=0.617 Sum_probs=31.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|.-||-|.+..++..|+..|||+|-+-|+|.+--
T Consensus 232 kgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 232 KGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 47789999999999999999999999999997543
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=72.96 E-value=5.3 Score=37.83 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=37.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec---cCCCccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS---PVTDFRE 45 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs---PVtdF~e 45 (216)
.|-.||.|+++.+-..|++...|--.+|+.|+|.+- -|.-|.-
T Consensus 143 kGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 143 KGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred cceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccc
Confidence 588999999999999999999999999999999883 4555543
No 77
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=72.23 E-value=0.94 Score=41.80 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=32.7
Q ss_pred CcccceecccccCcCCCCCCCCcccccCCCHHHHH-HHHhh
Q 027939 42 DFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR-QLFGR 81 (216)
Q Consensus 42 dF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~-~Lf~~ 81 (216)
+-..-+|-+|..+.|.+|..|+|+|-+..-+...+ +||..
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsD 122 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSD 122 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhh
Confidence 45677999999999999999999999877765544 57764
No 78
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=71.44 E-value=2.1 Score=38.83 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=49.8
Q ss_pred EEEeCCHHHHHHHHHHhcC------cccCCe------ee----EEEeccCCCcccceeccc-ccCcCCCCCCCCcccccC
Q 027939 7 YVQFREEEQAARALKSLSG------RFYAGR------PI----IVDFSPVTDFREATCRQY-EENTCNRGGYCNFMHLKR 69 (216)
Q Consensus 7 YVkF~~ee~A~~Av~~LNG------RwYaGR------~I----~aEfsPVtdF~eA~Crq~-~~g~C~RGg~CNFmHvk~ 69 (216)
.+-|...+-|++|-..+-. ++..|+ +| .+...-|.||...+|..| ++|-|.-|..|-|||...
T Consensus 87 lL~~~~~~LA~ka~~~~~~~~Ne~~~~m~~k~~~~~K~~~~Pt~~r~~~viD~qpdVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 87 LLNFERKELAEKAKKRRPSDDNELVLNMSGKNKRLTKQINQPTMFRDGEVIDTQPDVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred HhCCCCHHHHHHHhhcCCccchHHHHhccccchhhhhhccCCceeeccceeecCcccccchhhcccccCCchhhhhhhhh
Confidence 3457777778777653211 222232 22 223346789999999999 678999999999999753
Q ss_pred ---CCHHHHHHHHhhhhccC
Q 027939 70 ---ISRDLRRQLFGRYRRRH 86 (216)
Q Consensus 70 ---~sr~L~~~Lf~~~~~~~ 86 (216)
....|-++--..|++.+
T Consensus 167 D~KtGWkLn~EWnA~~Ee~~ 186 (259)
T COG5152 167 DFKTGWKLNQEWNAEYEEAP 186 (259)
T ss_pred hhhcccccchhhcchhhhcc
Confidence 33333333333366555
No 79
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=71.11 E-value=4.5 Score=31.58 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=16.9
Q ss_pred eEEEEeCCHHHHHHHHHHhcCc
Q 027939 5 NVYVQFREEEQAARALKSLSGR 26 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGR 26 (216)
..||.|.+++.|++|+..|.--
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHT
T ss_pred EEEEEECCcchHHHHHHHHHhc
Confidence 5799999999999999998866
No 80
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=70.87 E-value=3.4 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=22.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcC
Q 027939 3 VGNVYVQFREEEQAARALKSLSG 25 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNG 25 (216)
.|..||||.+--+|..||.+|+|
T Consensus 60 KGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 60 KGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred CCceEEEeccchHHHHHHHHhcc
Confidence 58999999999999999999998
No 81
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=70.10 E-value=2.3 Score=43.24 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=45.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCc--ccCCeeeEEEeccC------CCcccceecc--cccCcCCCCCCCCcccccCCC
Q 027939 4 GNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPV------TDFREATCRQ--YEENTCNRGGYCNFMHLKRIS 71 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGR--wYaGR~I~aEfsPV------tdF~eA~Crq--~~~g~C~RGg~CNFmHvk~~s 71 (216)
-|-||.|+++.||+.|++.|.-+ -|-||||.|-.-++ .-|+--.--. |...+=.++..=+||-..-+|
T Consensus 213 ~nWyITfesd~DAQqAykylreevk~fqgKpImARIKaintf~pkngyrp~~~s~~~~~~~tq~~y~~~~~~~pv~~p 290 (684)
T KOG2591|consen 213 DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAINTFFPKNGYRPMDSSIYSHPIQTQARYASPVYMQPVYNP 290 (684)
T ss_pred CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhhcccCCCCCCCCccccccchhhhhhccccccccccccCc
Confidence 47899999999999999999765 69999998865443 3333111111 223345677777777665554
No 82
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=70.07 E-value=3.5 Score=41.92 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=34.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+|+-||.|.=+|+++.|+..+++--|.|+.|.+++-
T Consensus 47 RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 47 RGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred cCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 589999999999999999999999999999999884
No 83
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=68.23 E-value=3.8 Score=42.41 Aligned_cols=13 Identities=38% Similarity=0.271 Sum_probs=5.9
Q ss_pred CCCCcHHHHHHHH
Q 027939 152 VREGSEERRAKIE 164 (216)
Q Consensus 152 ~Re~S~ERRa~ie 164 (216)
.+.-+.-|+.+-+
T Consensus 811 ~~~k~~~~~~~~~ 823 (878)
T KOG1847|consen 811 HRHKSSKRIKKDE 823 (878)
T ss_pred CcccccccCcCcc
Confidence 3444555544433
No 84
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=68.06 E-value=19 Score=37.14 Aligned_cols=12 Identities=83% Similarity=1.060 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCC
Q 027939 87 SRSRSRSRSPYR 98 (216)
Q Consensus 87 ~~~~~~s~s~~~ 98 (216)
++++|||+||..
T Consensus 605 srskSRSRSpS~ 616 (757)
T KOG4368|consen 605 SRSKSRSRSPSR 616 (757)
T ss_pred ccccccCCCccc
Confidence 455555555544
No 85
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=66.94 E-value=1.9 Score=40.72 Aligned_cols=37 Identities=27% Similarity=0.632 Sum_probs=30.0
Q ss_pred EeccC-CCcccceecccccCcCCCCCCCCcccccCCCH
Q 027939 36 DFSPV-TDFREATCRQYEENTCNRGGYCNFMHLKRISR 72 (216)
Q Consensus 36 EfsPV-tdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr 72 (216)
.-+|+ +|-..-+|-.|-.|+|.+|..|+|.|-+-+-+
T Consensus 82 qkv~~gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~ 119 (343)
T KOG1763|consen 82 QKVPKGVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVER 119 (343)
T ss_pred cccccCCCchHHHHHHHhccCCCCCCcccccchHHHhh
Confidence 33455 67788899999999999999999999765443
No 86
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=66.77 E-value=4.3 Score=28.08 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=14.5
Q ss_pred eEEEEeCCHHHHHHHH
Q 027939 5 NVYVQFREEEQAARAL 20 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av 20 (216)
.+||+|.+..+|++|+
T Consensus 38 ~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 38 WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEECCHHHHHhhC
Confidence 4899999999999985
No 87
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=65.43 E-value=7.5 Score=33.52 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=30.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhc--CcccCCeeeEEEeccCCCc
Q 027939 4 GNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDF 43 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LN--GRwYaGR~I~aEfsPVtdF 43 (216)
+-|-|-|.+.++|..|...|+ +-.|.|..|.+-|...+..
T Consensus 32 rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 32 RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 467899999999999999999 9999999999999855555
No 88
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=64.18 E-value=9.9 Score=35.14 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=29.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccC---CeeeEEEec
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFS 38 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYa---GR~I~aEfs 38 (216)
+.||.|.+-.+|++|+++|||=-|+ +..|+.||-
T Consensus 79 vaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 79 VAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 5799999999999999999999887 667777774
No 89
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=63.89 E-value=4.1 Score=36.42 Aligned_cols=31 Identities=19% Similarity=0.672 Sum_probs=27.6
Q ss_pred CCcccceeccccc-CcCCCCCCCCcccccCCC
Q 027939 41 TDFREATCRQYEE-NTCNRGGYCNFMHLKRIS 71 (216)
Q Consensus 41 tdF~eA~Crq~~~-g~C~RGg~CNFmHvk~~s 71 (216)
-.|++-.|.-|.. |.|..|..|=|+|...-.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 6899999999976 999999999999997633
No 90
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=63.32 E-value=9.4 Score=30.47 Aligned_cols=24 Identities=25% Similarity=0.593 Sum_probs=22.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccC
Q 027939 6 VYVQFREEEQAARALKSLSGRFYA 29 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYa 29 (216)
|-+||.+.++|..=+..+||+-|+
T Consensus 57 VLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 57 VLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEECCHHHHHHHHHHhCCCccC
Confidence 779999999999999999999997
No 91
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=62.40 E-value=6.4 Score=40.20 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=26.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGR 31 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR 31 (216)
.|.+|+.|.+..+|..|++.|||-=++-.
T Consensus 105 kG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 105 KGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred eeEEEEEecChhhHHHHHHhcccceeccc
Confidence 58999999999999999999999877754
No 92
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=59.98 E-value=10 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcc
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRF 27 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRw 27 (216)
||.|.|||+=.++.+...|++.|.+=+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 689999999999999999999887643
No 93
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.37 E-value=3.4 Score=38.90 Aligned_cols=30 Identities=30% Similarity=0.815 Sum_probs=26.3
Q ss_pred cCCCcccceeccc-ccCcCCCCCCCCccccc
Q 027939 39 PVTDFREATCRQY-EENTCNRGGYCNFMHLK 68 (216)
Q Consensus 39 PVtdF~eA~Crq~-~~g~C~RGg~CNFmHvk 68 (216)
-+-||..-+|..| ++|-|..|..|-|||-+
T Consensus 180 ~~~d~qpDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 180 ERIDYQPDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred ceeecCchhhhhhHhhCcccccchhhhhhhh
Confidence 3468999999999 66899999999999975
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=57.35 E-value=24 Score=34.98 Aligned_cols=46 Identities=26% Similarity=0.334 Sum_probs=37.4
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecc
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQ 50 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq 50 (216)
+..|++.+...|+-|+..|+|--.=|++|.+.||-=++-.--.=+|
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 6789999999999999999997666699999998656655554333
No 95
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=56.75 E-value=6.4 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.471 Sum_probs=25.8
Q ss_pred CcccceecccccCcCCCCCCCCcccccCCCH
Q 027939 42 DFREATCRQYEENTCNRGGYCNFMHLKRISR 72 (216)
Q Consensus 42 dF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr 72 (216)
..+.-.|+-+.++.|+.+..|.|||=..+..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~ 131 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRS 131 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCccc
Confidence 6778889988999999999999999776655
No 96
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=54.53 E-value=8.5 Score=21.87 Aligned_cols=18 Identities=33% Similarity=0.835 Sum_probs=13.6
Q ss_pred ecccccCcCCCCCCCCcccc
Q 027939 48 CRQYEENTCNRGGYCNFMHL 67 (216)
Q Consensus 48 Crq~~~g~C~RGg~CNFmHv 67 (216)
|+-+. .|..+..|-|+|.
T Consensus 2 Ck~~~--~C~~~~~C~f~HP 19 (19)
T PF14608_consen 2 CKFGP--NCTNGDNCPFSHP 19 (19)
T ss_pred CcCcC--CCCCCCcCccCCc
Confidence 66332 3999999999994
No 97
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=53.91 E-value=12 Score=37.18 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=24.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcc-cCC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRF-YAG 30 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRw-YaG 30 (216)
.|..||+|.+.++|.+|+.+|+.-+ +-|
T Consensus 76 ~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 76 KGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred cceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 5899999999999999999998754 444
No 98
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=53.16 E-value=21 Score=30.25 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=29.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 46 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA 46 (216)
|...|.|.+-+.|.+|+. |+|--.+|+.|.+.+-. .||-.+
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt-pdW~~~ 111 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT-PDWLKG 111 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---------
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC-ccHHHH
Confidence 567999999999998875 68999999999999943 388643
No 99
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=52.97 E-value=9.2 Score=27.63 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=17.6
Q ss_pred EEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 7 YVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 7 YVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
||.-. ++.|..++..|++-.+.|++|.+|.
T Consensus 44 ~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 44 FVEVP-EEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEE--TT-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEC-HHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 44444 3469999999999999999999885
No 100
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=50.58 E-value=18 Score=34.40 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 6 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
-||..+++..|+.||..|+|=-..|..|.+|-+-
T Consensus 39 gFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 39 GFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred ceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 4788899999999999999999999999999864
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=49.44 E-value=4.3 Score=36.35 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|+.|+.|++.....-||..|||=-..||.|.+.-+
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 599999999999999999999999999999998764
No 102
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=45.90 E-value=41 Score=26.38 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYA 29 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYa 29 (216)
.|-+||-|.+++.|..-++.++|+...
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 489999999999999999999998764
No 103
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=45.81 E-value=36 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=17.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccC
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYA 29 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYa 29 (216)
|.=.|+|.|.-+--|.+|+ .|-+|-+.
T Consensus 172 lRT~v~vry~pe~iACaci-yLaAR~~e 198 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACI-YLAARNLE 198 (367)
T ss_pred cccceeeecCHHHHHHHHH-HHHHhhhc
Confidence 3457999999888777665 34444443
No 104
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=43.71 E-value=23 Score=36.63 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027939 163 IEQWNRE 169 (216)
Q Consensus 163 ie~Wnre 169 (216)
|+-=|++
T Consensus 684 lse~NKG 690 (757)
T KOG4368|consen 684 LGEENKG 690 (757)
T ss_pred cccccch
Confidence 3333433
No 105
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=36.65 E-value=26 Score=36.11 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=44.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCccccccCCCCccccCC
Q 027939 152 VREGSEERRAKIEQWNREREQQEEAYKGNTDGGNNDQGINNDGLMQNGNGYHSYKQ 207 (216)
Q Consensus 152 ~Re~S~ERRa~ie~Wnrere~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (216)
.|+.++||-++-..| +|+..++..-+-++.+-+|+|++-|-++-+.+.+..+|.+
T Consensus 563 srkr~ee~e~r~r~w-~e~~g~~~~s~trn~gp~~~~~ssn~sd~~t~r~~fky~r 617 (673)
T KOG2296|consen 563 SRKRGEEREARTRKW-AEQQGKHSPSETRNSGPSNGQGSSNPSDASTGRNMFKYIR 617 (673)
T ss_pred HHhhhhhHHHHHHHH-HHHhcCCCcccccCCCCCCCCCCCCccccccccchHHHHH
Confidence 367788888888899 7888777666777888899999999988777888888765
No 106
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=36.31 E-value=33 Score=35.63 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=31.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 6 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
-||...+.++|.+||..|+---+-||+|.||-.
T Consensus 450 GfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 450 GFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred EEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 489999999999999999999999999999985
No 107
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=35.09 E-value=51 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=10.8
Q ss_pred HHHHHHhhhhhcccCCCCCC
Q 027939 166 WNREREQQEEAYKGNTDGGN 185 (216)
Q Consensus 166 Wnrere~~~~~~~~~~~~~~ 185 (216)
.++|.-.++..|..-++++|
T Consensus 830 ~~r~~~~~~~~~e~~~~~~~ 849 (894)
T KOG0132|consen 830 YEREPPVKNTSVEEPTSQGN 849 (894)
T ss_pred ccCCCCcccccccCcccccc
Confidence 33444455555566666653
No 108
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=34.69 E-value=25 Score=32.72 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=30.9
Q ss_pred CCeeeEEEeccCCCcccceecccccCcCCCCCCCCcccccCCC
Q 027939 29 AGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIS 71 (216)
Q Consensus 29 aGR~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~s 71 (216)
.|+-..|.|+.. --+..+|-.|..|.|.+-.-||.-|-+.|-
T Consensus 218 cgkgaacrfvhe-ptrkticpkflngrcnkaedcnlsheldpr 259 (377)
T KOG1492|consen 218 CGKGAACRFVHE-PTRKTICPKFLNGRCNKAEDCNLSHELDPR 259 (377)
T ss_pred ccCCceeeeecc-ccccccChHHhcCccCchhcCCcccccCcc
Confidence 466667777642 235678888888888888888888876554
No 109
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=33.84 E-value=34 Score=31.45 Aligned_cols=37 Identities=38% Similarity=0.552 Sum_probs=28.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceeccccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEE 53 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~ 53 (216)
.|.-||.|.+.++|..|++..| ||.|=+.|.|.+--.
T Consensus 54 kGyGfVTf~d~~aa~rAc~dp~--------------piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 54 KGYGFVTFRDAEAATRACKDPN--------------PIIDGRKANCNLASL 90 (247)
T ss_pred cceeeEEeecHHHHHHHhcCCC--------------Ccccccccccchhhh
Confidence 5788999999999999997654 556667777766433
No 110
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=32.58 E-value=57 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhc
Q 027939 3 VGNVYVQFREEEQAARALKSLS 24 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN 24 (216)
...+-|-|.+++.|+.|+++|.
T Consensus 2 ~~~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 2 SFTLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHHhC
Confidence 4678899999999999999885
No 111
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=32.33 E-value=32 Score=34.15 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=30.3
Q ss_pred eCCHHHHHHHHHHhcCccc--CCeee---------EEEeccCCCccc
Q 027939 10 FREEEQAARALKSLSGRFY--AGRPI---------IVDFSPVTDFRE 45 (216)
Q Consensus 10 F~~ee~A~~Av~~LNGRwY--aGR~I---------~aEfsPVtdF~e 45 (216)
-.+++.|..|+..|+.||. +|-.| .||.+|...|..
T Consensus 427 ~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~sY~g 473 (493)
T PLN02435 427 FDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAG 473 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCceeeCC
Confidence 3688999999999999999 77666 589999888753
No 112
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=32.16 E-value=19 Score=27.54 Aligned_cols=14 Identities=57% Similarity=1.144 Sum_probs=6.1
Q ss_pred cCCCCCCCCccccc
Q 027939 55 TCNRGGYCNFMHLK 68 (216)
Q Consensus 55 ~C~RGg~CNFmHvk 68 (216)
.|+||..|||.-++
T Consensus 58 dC~rG~~CN~flLk 71 (73)
T PF06373_consen 58 DCPRGTSCNFFLLK 71 (73)
T ss_dssp B--TT--B-TTT-S
T ss_pred CCCCCCchhhhHhh
Confidence 59999999997554
No 113
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=30.93 E-value=59 Score=27.53 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=26.7
Q ss_pred EEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccc
Q 027939 8 VQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 46 (216)
Q Consensus 8 VkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA 46 (216)
|-|.+++..+.|.+.|... -..++|..|..|++.|-.|
T Consensus 92 If~~d~eQ~~~a~~~~~~~-~~~~~i~Tei~~~~~Fy~A 129 (156)
T PRK05528 92 IYSEVDDHLIEARQFIERR-EDADKIAVEVLPLTNYVKS 129 (156)
T ss_pred EEeCCHHHHHHHHHHHHHH-hcCCCeEEEEecCCCeeec
Confidence 5566777766666655432 2357899999999999666
No 114
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=30.71 E-value=33 Score=25.66 Aligned_cols=15 Identities=47% Similarity=0.658 Sum_probs=13.0
Q ss_pred cceEEEEeCCHHHHH
Q 027939 3 VGNVYVQFREEEQAA 17 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~ 17 (216)
.|+|||.|..++-|+
T Consensus 46 ~G~vYi~~s~eel~~ 60 (76)
T PF06970_consen 46 NGNVYIIFSIEELME 60 (76)
T ss_pred CCCEEEEeeHHHHHH
Confidence 499999999998775
No 115
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.42 E-value=1.1e+02 Score=21.91 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=33.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceeccc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQY 51 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~ 51 (216)
...+|-|.+..+|.+|-+.|...=+ .+.+.|+..-=.+.|+.-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi-----~~~liP~P~~i~~~CG~a 44 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI-----PVRLIPTPREISAGCGLA 44 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC-----cEEEeCCChhccCCCCEE
Confidence 3579999999999999999987654 467778766667778763
No 116
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.35 E-value=49 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=21.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCccc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFY 28 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwY 28 (216)
+.||+-|.+++.|+.+++.|.-.|.
T Consensus 60 ~~v~~l~~~~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 60 PTVFALCKDEDDAERVAEALREHYK 84 (85)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCC
Confidence 6899999999999999999876553
No 117
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=30.04 E-value=23 Score=33.43 Aligned_cols=52 Identities=15% Similarity=0.356 Sum_probs=35.2
Q ss_pred eEEEeccCCCcccc-eeccc-ccCcCCCCCCCCcccccCCCHHHHHHHHhh-hhc
Q 027939 33 IIVDFSPVTDFREA-TCRQY-EENTCNRGGYCNFMHLKRISRDLRRQLFGR-YRR 84 (216)
Q Consensus 33 I~aEfsPVtdF~eA-~Crq~-~~g~C~RGg~CNFmHvk~~sr~L~~~Lf~~-~~~ 84 (216)
.+|+|+-..+.... .|.-| ..+.|..+..|.|||+-.-+....-..|.. |.+
T Consensus 92 D~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~ 146 (325)
T KOG1040|consen 92 DQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCR 146 (325)
T ss_pred CcCcchhhhhhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCC
Confidence 45777765455555 56555 568999999999999987555544455554 444
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=28.87 E-value=50 Score=24.18 Aligned_cols=18 Identities=56% Similarity=0.730 Sum_probs=15.6
Q ss_pred EEEEeCCHHHHHHHHHHh
Q 027939 6 VYVQFREEEQAARALKSL 23 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~L 23 (216)
+=|-|.+++.|..|+.+|
T Consensus 45 cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 45 CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEECCHHHHHHHHHcC
Confidence 447899999999999886
No 119
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.74 E-value=67 Score=30.83 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=30.4
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCc
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 43 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF 43 (216)
.+||.|...-+|.+||.. ||+-|+|-.|+ -..|.||-
T Consensus 234 wMhirYssr~~A~KALsk-ng~ii~g~vmi-GVkpCtDk 270 (350)
T KOG4285|consen 234 WMHIRYSSRTHAQKALSK-NGTIIDGDVMI-GVKPCTDK 270 (350)
T ss_pred eEEEEecchhHHHHhhhh-cCeeeccceEE-eeeecCCH
Confidence 379999999999999987 99999998774 56665553
No 120
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=27.85 E-value=26 Score=32.59 Aligned_cols=22 Identities=36% Similarity=0.973 Sum_probs=18.5
Q ss_pred ceeccc-ccCcCCCCCCCCcccc
Q 027939 46 ATCRQY-EENTCNRGGYCNFMHL 67 (216)
Q Consensus 46 A~Crq~-~~g~C~RGg~CNFmHv 67 (216)
.-|+-| ..|-|.+|..|-|+|-
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 458877 4589999999999995
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.69 E-value=29 Score=33.53 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=26.3
Q ss_pred cceecccccCcCCCCCCCCcccccCCCHHH
Q 027939 45 EATCRQYEENTCNRGGYCNFMHLKRISRDL 74 (216)
Q Consensus 45 eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L 74 (216)
.-+|--+..|+|.||..|-|=|=+++.-.|
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp~d~~L 190 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKPPDDPL 190 (377)
T ss_pred CccccceeeccccccccccccccCCCCcch
Confidence 458999999999999999999999976555
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=26.56 E-value=70 Score=33.22 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=37.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcC-ccc--CCeeeEEEeccCCCcccceec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSG-RFY--AGRPIIVDFSPVTDFREATCR 49 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNG-RwY--aGR~I~aEfsPVtdF~eA~Cr 49 (216)
+.-..||.|.++++|.+.+.+||| +|= +++-|.|+|.--++..-++-.
T Consensus 480 IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld~hr~~ 530 (718)
T KOG2416|consen 480 IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELDKHRNG 530 (718)
T ss_pred hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHHHHhcc
Confidence 345689999999999999999998 664 567789999766666544333
No 123
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=26.41 E-value=32 Score=33.47 Aligned_cols=8 Identities=25% Similarity=0.933 Sum_probs=3.9
Q ss_pred ceEEEEeC
Q 027939 4 GNVYVQFR 11 (216)
Q Consensus 4 GNVYVkF~ 11 (216)
|+.||.|.
T Consensus 161 GFmYiRYt 168 (453)
T KOG2888|consen 161 GFMYIRYT 168 (453)
T ss_pred eeeEEeec
Confidence 45555543
No 124
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=26.20 E-value=55 Score=32.89 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=31.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccce
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREAT 47 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~ 47 (216)
.|-.||+|++.+.|++|++- |-.-++=|=|.+--+-+.+++.|.
T Consensus 145 tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 145 TGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred ccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhc
Confidence 47899999999999999986 444455555655555555555554
No 125
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=26.05 E-value=37 Score=31.33 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=29.9
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
++||.|.+|-.-.-|++.|||=-.-+++|.+.|
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 699999999999999999999888888887776
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=23.04 E-value=67 Score=32.31 Aligned_cols=20 Identities=45% Similarity=0.785 Sum_probs=18.2
Q ss_pred cceEEEEeCCHHHHHHHHHH
Q 027939 3 VGNVYVQFREEEQAARALKS 22 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~ 22 (216)
.|-.||+|.++|++++|++.
T Consensus 49 sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 49 SGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred CcceEEEeechHHHHHHHHh
Confidence 58899999999999999974
No 127
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=22.78 E-value=67 Score=26.89 Aligned_cols=37 Identities=24% Similarity=0.584 Sum_probs=24.5
Q ss_pred EEeCCHHHH---HHHHHHhcC--cccCCeeeEEEeccCCCcccc
Q 027939 8 VQFREEEQA---ARALKSLSG--RFYAGRPIIVDFSPVTDFREA 46 (216)
Q Consensus 8 VkF~~ee~A---~~Av~~LNG--RwYaGR~I~aEfsPVtdF~eA 46 (216)
|-|.++++. ++++..|.. .| +++|..|+.|++.|-.|
T Consensus 96 If~~~~~q~~~a~~~~~~~~~~~~~--~~~i~tei~~~~~Fy~A 137 (149)
T TIGR00401 96 IYYHSDEQEKAARASKERLQAAANY--GDPIVTEIEPAENFYYA 137 (149)
T ss_pred EEeCCHHHHHHHHHHHHHHHHhccc--CCCeEEEEecCCCeeec
Confidence 345555554 444555554 43 67999999999999665
No 128
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=22.36 E-value=57 Score=31.38 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|-.-|.|.+.-.|+.||..++++=|.|.+|.+.+
T Consensus 116 KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~ 150 (351)
T KOG1995|consen 116 KGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSL 150 (351)
T ss_pred CCceeeeecChhhhhhhhhhhccccccCCCchhhh
Confidence 46778999999999999999999999998887665
No 129
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=22.23 E-value=1e+02 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
||.|-..+-|-.++.-.-|++.|++=-|.|+.|.||--
T Consensus 181 ~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 181 KLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred CccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 57888889999999999999999999999999999864
No 130
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=21.60 E-value=76 Score=27.70 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=38.4
Q ss_pred EeCCHHH---HHHHHHHhcCcccCCeeeEEEeccCCCcccceec-ccccCcCCCCCCCCcccccCC
Q 027939 9 QFREEEQ---AARALKSLSGRFYAGRPIIVDFSPVTDFREATCR-QYEENTCNRGGYCNFMHLKRI 70 (216)
Q Consensus 9 kF~~ee~---A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Cr-q~~~g~C~RGg~CNFmHvk~~ 70 (216)
-|.++++ |++++..|...-.-+++|..|+.|+..|-.|-=- |.=-.+-+.+++|-+.+..+.
T Consensus 105 f~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~~~yc~~~~~~~~ 170 (186)
T PRK13014 105 FYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPTHPYIVYNDLPKG 170 (186)
T ss_pred EeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCCCCccEEEeChhh
Confidence 3445544 4556666654322278899999999999777321 111134688899987766443
No 131
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=21.55 E-value=71 Score=31.55 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhcCccc--CCeee---------EEEeccCCCcccc
Q 027939 11 REEEQAARALKSLSGRFY--AGRPI---------IVDFSPVTDFREA 46 (216)
Q Consensus 11 ~~ee~A~~Av~~LNGRwY--aGR~I---------~aEfsPVtdF~eA 46 (216)
.+++.|..++..|+.||. +|-.+ .+|.||...|..-
T Consensus 419 d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~sy~ge 465 (482)
T PTZ00339 419 DTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGE 465 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCcceeCCC
Confidence 578999999999999998 77644 4688998887543
No 132
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=21.53 E-value=71 Score=31.65 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHhcC
Q 027939 6 VYVQFREEEQAARALKSLSG 25 (216)
Q Consensus 6 VYVkF~~ee~A~~Av~~LNG 25 (216)
.-|+|++.+.|++|-.+|||
T Consensus 162 AmVEFdsv~~AqrAk~alNG 181 (494)
T KOG1456|consen 162 AMVEFDSVEVAQRAKAALNG 181 (494)
T ss_pred eEEeechhHHHHHHHhhccc
No 133
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=21.06 E-value=1.1e+02 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=13.9
Q ss_pred cceEEEEeCCHHHHHHH
Q 027939 3 VGNVYVQFREEEQAARA 19 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~A 19 (216)
.|.+|-.|.+.++|+++
T Consensus 28 ~ga~~k~F~t~~eA~~~ 44 (44)
T PF01693_consen 28 PGAIYKSFKTREEAEEF 44 (44)
T ss_dssp TT-EEEEESSHHHHHHH
T ss_pred CCceECCcCCHHHHhhC
Confidence 57899999999999864
No 134
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=73 Score=28.66 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCcccCCeeeEEEeccCCCcccc
Q 027939 15 QAARALKSLSGRFYAGRPIIVDFSPVTDFREA 46 (216)
Q Consensus 15 ~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA 46 (216)
=++.|++.|+|+-.+|-.|.+...| +.|.+|
T Consensus 18 Ps~e~vk~L~~~~i~g~~V~~~~lP-~~f~~s 48 (207)
T COG2039 18 PSWEAVKELNGRIIGGAEVKGRILP-VVFKKS 48 (207)
T ss_pred hHHHHHHhcCcccccCceEEEEEcC-ccHHHH
Confidence 4789999999999999999999999 456544
No 135
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.30 E-value=1.4e+02 Score=26.66 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=31.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCe-eeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR-~I~aEfs 38 (216)
.+.|-|-|.+.+.|+.|...|+++-|.|+ -+.+-|-
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 36789999999999999999999999999 5555553
No 136
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=20.09 E-value=50 Score=29.55 Aligned_cols=34 Identities=26% Similarity=0.610 Sum_probs=28.3
Q ss_pred cCCCcccceeccc-ccCcCCC-CCCCCcccccCCCH
Q 027939 39 PVTDFREATCRQY-EENTCNR-GGYCNFMHLKRISR 72 (216)
Q Consensus 39 PVtdF~eA~Crq~-~~g~C~R-Gg~CNFmHvk~~sr 72 (216)
....|..+.|.-| ..+.|.. |..|.|=|.+.-.+
T Consensus 126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred CcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 3478999999999 5589998 99999988777666
Done!