Query 027939
Match_columns 216
No_of_seqs 189 out of 320
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ue2_A Poly(U)-binding-splicin 99.2 3E-12 1E-16 99.0 2.9 44 2-45 70-113 (118)
2 3v4m_A Splicing factor U2AF 65 99.2 1.4E-11 4.7E-16 92.7 3.8 44 2-45 58-101 (105)
3 3s6e_A RNA-binding protein 39; 99.2 1.2E-11 4.3E-16 95.2 3.5 44 2-45 54-97 (114)
4 2pe8_A Splicing factor 45; RRM 99.1 3.6E-11 1.2E-15 90.6 3.7 45 2-46 55-99 (105)
5 1jmt_A Splicing factor U2AF 35 99.0 3.1E-10 1.1E-14 85.0 4.9 38 2-39 67-104 (104)
6 2dit_A HIV TAT specific factor 98.7 1.5E-08 5.1E-13 75.3 6.0 44 2-45 63-107 (112)
7 3pgw_S U1-70K; protein-RNA com 98.5 5.5E-07 1.9E-11 82.5 11.1 61 2-62 143-203 (437)
8 4fxv_A ELAV-like protein 1; RN 98.2 2E-06 7E-11 63.0 5.0 36 3-38 61-96 (99)
9 2cpi_A CCR4-NOT transcription 98.2 2E-06 6.9E-11 63.4 5.0 36 3-38 63-98 (111)
10 3mdf_A Peptidyl-prolyl CIS-tra 98.2 2.6E-06 8.9E-11 58.8 5.0 36 3-38 49-84 (85)
11 2cqc_A Arginine/serine-rich sp 98.1 2.4E-06 8.2E-11 60.1 4.7 36 3-38 57-92 (95)
12 3s8s_A Histone-lysine N-methyl 98.1 2.6E-06 8.7E-11 63.9 5.1 37 3-39 48-84 (110)
13 2ek1_A RNA-binding protein 12; 98.1 2.7E-06 9.3E-11 60.0 4.7 37 3-39 57-93 (95)
14 1whx_A Hypothetical protein ri 98.1 3.2E-06 1.1E-10 62.8 5.3 41 3-43 46-86 (111)
15 3bs9_A Nucleolysin TIA-1 isofo 98.1 3.3E-06 1.1E-10 58.5 4.9 36 3-38 48-83 (87)
16 2e5h_A Zinc finger CCHC-type a 98.1 3.7E-06 1.3E-10 59.2 5.2 36 3-38 58-93 (94)
17 4a8x_A RNA-binding protein wit 98.1 3.7E-06 1.3E-10 58.1 5.0 36 3-38 47-82 (88)
18 1wg1_A KIAA1579 protein, homol 98.1 3.4E-06 1.2E-10 59.5 4.9 40 3-42 40-79 (88)
19 3md1_A Nuclear and cytoplasmic 98.1 4.2E-06 1.4E-10 57.5 5.0 36 3-38 43-78 (83)
20 1x5s_A Cold-inducible RNA-bind 98.1 3.7E-06 1.3E-10 60.1 4.9 37 2-38 53-89 (102)
21 2dnz_A Probable RNA-binding pr 98.1 4.4E-06 1.5E-10 58.9 5.1 37 3-39 47-83 (95)
22 1x5t_A Splicing factor 3B subu 98.1 4.1E-06 1.4E-10 59.2 4.8 36 3-38 48-83 (96)
23 2cqb_A Peptidyl-prolyl CIS-tra 98.1 3.5E-06 1.2E-10 60.3 4.5 38 2-39 53-90 (102)
24 2fc8_A NCL protein; structure 98.1 4E-06 1.4E-10 60.0 4.8 36 3-38 54-89 (102)
25 1whw_A Hypothetical protein ri 98.1 5E-06 1.7E-10 59.2 5.2 37 3-39 50-86 (99)
26 3ulh_A THO complex subunit 4; 98.1 4.6E-06 1.6E-10 60.1 5.0 37 3-39 70-106 (107)
27 2d9p_A Polyadenylate-binding p 98.1 4.4E-06 1.5E-10 60.0 4.9 37 3-39 55-91 (103)
28 2cqp_A RNA-binding protein 12; 98.0 5.2E-06 1.8E-10 59.0 5.0 36 3-38 57-92 (98)
29 2x1f_A MRNA 3'-END-processing 98.0 5.6E-06 1.9E-10 59.0 5.0 37 3-39 44-80 (96)
30 2cq3_A RNA-binding protein 9; 98.0 5.8E-06 2E-10 59.4 5.1 36 3-38 55-90 (103)
31 2cpf_A RNA binding motif prote 98.0 5E-06 1.7E-10 59.1 4.6 37 3-39 50-86 (98)
32 1b7f_A Protein (SXL-lethal pro 98.0 1.6E-05 5.6E-10 59.7 7.6 37 3-39 45-81 (168)
33 1x5u_A Splicing factor 3B subu 98.0 6.1E-06 2.1E-10 59.3 5.0 36 3-38 57-92 (105)
34 2fc9_A NCL protein; structure 98.0 6E-06 2E-10 59.1 4.9 36 3-38 53-88 (101)
35 2cq0_A Eukaryotic translation 98.0 6.2E-06 2.1E-10 59.3 4.9 37 3-39 57-93 (103)
36 2dgo_A Cytotoxic granule-assoc 98.0 6E-06 2E-10 60.4 4.9 36 3-38 57-92 (115)
37 2cpd_A Apobec-1 stimulating pr 98.0 6.4E-06 2.2E-10 58.9 5.0 37 2-38 50-86 (99)
38 2ywk_A Putative RNA-binding pr 98.0 4.9E-06 1.7E-10 58.7 4.2 36 3-38 57-92 (95)
39 2cph_A RNA binding motif prote 98.0 7.5E-06 2.6E-10 58.8 5.2 37 3-39 58-95 (107)
40 2cpe_A RNA-binding protein EWS 98.0 6.4E-06 2.2E-10 60.1 4.9 36 3-38 65-100 (113)
41 3ex7_B RNA-binding protein 8A; 98.0 6.4E-06 2.2E-10 61.2 5.0 36 3-38 64-99 (126)
42 2la6_A RNA-binding protein FUS 98.0 6.3E-06 2.2E-10 59.0 4.8 36 3-38 63-98 (99)
43 1p27_B RNA-binding protein 8A; 98.0 6.7E-06 2.3E-10 59.2 4.9 36 3-38 65-100 (106)
44 1p1t_A Cleavage stimulation fa 98.0 6E-06 2.1E-10 59.1 4.6 37 3-39 50-86 (104)
45 2cqi_A Nucleolysin TIAR; RNA r 98.0 7.1E-06 2.4E-10 58.9 5.0 36 3-38 55-90 (103)
46 1x4a_A Splicing factor, argini 98.0 6.5E-06 2.2E-10 59.9 4.8 36 3-38 61-96 (109)
47 1fjc_A Nucleolin RBD2, protein 98.0 6.7E-06 2.3E-10 58.2 4.6 36 3-38 53-88 (96)
48 2e5j_A Methenyltetrahydrofolat 98.0 6.9E-06 2.4E-10 58.7 4.7 36 3-38 56-91 (97)
49 2do4_A Squamous cell carcinoma 98.0 7.4E-06 2.5E-10 58.6 4.8 36 3-38 58-93 (100)
50 2dnm_A SRP46 splicing factor; 98.0 4.5E-06 1.6E-10 60.0 3.7 37 3-39 55-91 (103)
51 2dgu_A Heterogeneous nuclear r 98.0 8.1E-06 2.8E-10 58.9 5.0 37 2-38 44-80 (103)
52 1nu4_A U1A RNA binding domain; 98.0 8.3E-06 2.9E-10 57.6 4.9 36 3-38 51-86 (97)
53 1fxl_A Paraneoplastic encephal 98.0 2.6E-05 8.8E-10 58.2 7.8 37 3-39 44-80 (167)
54 2jrs_A RNA-binding protein 39; 98.0 8.7E-06 3E-10 60.2 5.0 36 3-38 68-103 (108)
55 2cqh_A IGF-II mRNA-binding pro 98.0 7.2E-06 2.5E-10 57.9 4.4 37 3-39 44-81 (93)
56 2do0_A HnRNP M, heterogeneous 98.0 8.9E-06 3E-10 59.2 4.9 37 3-39 56-92 (114)
57 2cpx_A Hypothetical protein FL 98.0 9.4E-06 3.2E-10 59.2 5.0 37 3-39 67-103 (115)
58 2dgx_A KIAA0430 protein; RRM d 97.9 9.4E-06 3.2E-10 58.2 4.9 36 3-38 52-87 (96)
59 2xnq_A Nuclear polyadenylated 97.9 1E-05 3.5E-10 58.6 5.1 36 3-38 57-92 (97)
60 3beg_B Splicing factor, argini 97.9 5.9E-06 2E-10 61.6 3.8 36 4-39 52-87 (115)
61 2dgv_A HnRNP M, heterogeneous 97.9 6.9E-06 2.4E-10 57.6 3.9 36 3-38 48-83 (92)
62 2fy1_A RNA-binding motif prote 97.9 8.7E-06 3E-10 60.9 4.7 37 3-39 48-84 (116)
63 1oo0_B CG8781-PA, drosophila Y 97.9 1.1E-05 3.8E-10 58.5 5.0 36 3-38 68-103 (110)
64 2cpz_A CUG triplet repeat RNA- 97.9 9E-06 3.1E-10 59.6 4.6 36 3-38 67-102 (115)
65 2a3j_A U1 small nuclear ribonu 97.9 9E-06 3.1E-10 63.1 4.8 38 2-39 71-108 (127)
66 2dnp_A RNA-binding protein 14; 97.9 1.4E-05 4.7E-10 56.3 5.1 37 3-39 43-79 (90)
67 3ns6_A Eukaryotic translation 97.9 1.3E-05 4.3E-10 58.3 5.0 36 3-38 54-90 (100)
68 2dnq_A RNA-binding protein 4B; 97.9 1.2E-05 4.2E-10 56.5 4.8 36 3-38 42-77 (90)
69 2cpj_A Non-POU domain-containi 97.9 9.2E-06 3.2E-10 58.1 4.2 36 3-38 51-86 (99)
70 2err_A Ataxin-2-binding protei 97.9 9.1E-06 3.1E-10 59.9 4.2 36 3-38 69-104 (109)
71 4f25_A Polyadenylate-binding p 97.9 1.2E-05 4.2E-10 59.7 5.0 36 3-38 45-80 (115)
72 3p5t_L Cleavage and polyadenyl 97.9 6.5E-06 2.2E-10 58.3 3.3 36 3-38 45-80 (90)
73 1x4g_A Nucleolysin TIAR; struc 97.9 1.2E-05 4.2E-10 58.5 4.9 36 3-38 61-96 (109)
74 2kt5_A RNA and export factor-b 97.9 1.5E-05 5.2E-10 59.3 5.4 38 2-39 75-112 (124)
75 1fj7_A Nucleolin RBD1, protein 97.9 1.2E-05 4.2E-10 57.5 4.7 35 3-38 58-92 (101)
76 1u6f_A Tcubp1, RNA-binding pro 97.9 1.2E-05 4E-10 60.7 4.8 37 3-39 84-120 (139)
77 2diu_A KIAA0430 protein; struc 97.9 1E-05 3.5E-10 62.3 4.4 36 4-39 47-82 (96)
78 1x5p_A Negative elongation fac 97.9 1.3E-05 4.5E-10 57.2 4.8 37 3-39 49-85 (97)
79 2jvr_A Nucleolar protein 3; RN 97.9 1.2E-05 4.3E-10 61.1 4.9 36 3-38 67-102 (111)
80 2dgt_A RNA-binding protein 30; 97.9 1.6E-05 5.6E-10 56.1 5.2 36 3-38 44-79 (92)
81 2nlw_A Eukaryotic translation 97.9 8.9E-06 3.1E-10 59.4 3.8 41 3-43 61-103 (105)
82 2ytc_A PRE-mRNA-splicing facto 97.9 1.2E-05 4.2E-10 55.5 4.3 36 3-38 48-84 (85)
83 2jvo_A Nucleolar protein 3; nu 97.9 1.2E-05 4.2E-10 59.5 4.6 36 3-38 65-100 (108)
84 1why_A Hypothetical protein ri 97.9 1.5E-05 5.1E-10 56.8 4.9 36 3-38 53-90 (97)
85 2kvi_A Nuclear polyadenylated 97.9 1.1E-05 3.6E-10 57.8 4.1 36 3-38 45-80 (96)
86 2dgw_A Probable RNA-binding pr 97.9 1.4E-05 4.6E-10 56.3 4.5 36 3-39 50-85 (91)
87 3lqv_A PRE-mRNA branch site pr 97.9 1.5E-05 5.2E-10 58.2 4.9 37 3-39 47-83 (115)
88 2krb_A Eukaryotic translation 97.9 5.9E-06 2E-10 57.3 2.5 33 3-35 47-80 (81)
89 2hvz_A Splicing factor, argini 97.8 1.2E-05 4.2E-10 57.5 4.0 37 3-39 37-73 (101)
90 2lkz_A RNA-binding protein 5; 97.8 1.2E-05 4.3E-10 59.2 4.1 37 3-39 53-93 (95)
91 1x4h_A RNA-binding protein 28; 97.8 1.9E-05 6.4E-10 57.1 4.9 36 3-38 57-98 (111)
92 2dnh_A Bruno-like 5, RNA bindi 97.8 1.8E-05 6.2E-10 56.8 4.8 36 3-38 56-94 (105)
93 2cqd_A RNA-binding region cont 97.8 1.3E-05 4.6E-10 58.8 4.1 37 2-39 58-94 (116)
94 2kxn_B Transformer-2 protein h 97.8 1.3E-05 4.4E-10 61.4 4.1 37 3-39 88-124 (129)
95 2dng_A Eukaryotic translation 97.8 1.6E-05 5.4E-10 57.3 4.3 36 3-39 56-91 (103)
96 1wi8_A EIF-4B, eukaryotic tran 97.8 2E-05 6.8E-10 56.8 4.7 36 3-39 57-92 (104)
97 2dgs_A DAZ-associated protein 97.8 2.2E-05 7.6E-10 55.9 4.9 35 3-38 52-86 (99)
98 2wbr_A GW182, gawky, LD47780P; 97.8 2E-05 6.7E-10 59.8 4.8 36 3-38 43-78 (89)
99 2dgp_A Bruno-like 4, RNA bindi 97.8 2.2E-05 7.5E-10 56.4 4.9 37 3-39 55-94 (106)
100 1wf1_A RNA-binding protein RAL 97.8 1.4E-05 4.7E-10 58.4 3.8 36 3-38 62-97 (110)
101 2dhg_A TRNA selenocysteine ass 97.8 1.1E-05 3.8E-10 57.8 3.2 36 3-38 51-87 (104)
102 2lxi_A RNA-binding protein 10; 97.8 1.7E-05 5.7E-10 57.0 4.0 36 3-38 44-80 (91)
103 3md3_A Nuclear and cytoplasmic 97.8 8.2E-05 2.8E-09 55.4 7.8 37 3-39 41-77 (166)
104 4f02_A Polyadenylate-binding p 97.8 2.1E-05 7.2E-10 63.4 4.9 36 3-38 143-178 (213)
105 3egn_A RNA-binding protein 40; 97.8 2.6E-05 8.7E-10 59.4 5.0 37 2-38 91-127 (143)
106 1h2v_Z 20 kDa nuclear CAP bind 97.8 2.4E-05 8.2E-10 60.3 4.9 37 3-39 81-117 (156)
107 3ucg_A Polyadenylate-binding p 97.8 1.9E-05 6.6E-10 54.7 3.9 35 3-38 48-82 (89)
108 2j76_E EIF-4B, EIF4B, eukaryot 97.8 2.1E-05 7E-10 56.8 4.0 36 2-38 60-95 (100)
109 2la4_A Nuclear and cytoplasmic 97.7 1.7E-05 6E-10 56.7 3.4 36 3-38 63-98 (101)
110 2bz2_A Negative elongation fac 97.7 3.8E-05 1.3E-09 58.3 5.5 40 3-42 73-112 (121)
111 1x5o_A RNA binding motif, sing 97.7 3.6E-05 1.2E-09 56.1 4.9 36 3-38 66-109 (114)
112 2hzc_A Splicing factor U2AF 65 97.7 3E-05 1E-09 53.5 4.2 34 3-37 53-86 (87)
113 2e44_A Insulin-like growth fac 97.7 5E-05 1.7E-09 53.6 5.4 36 4-39 55-90 (96)
114 2ki2_A SS-DNA binding protein 97.7 1.9E-05 6.5E-10 55.2 3.1 36 3-39 43-78 (90)
115 2div_A TRNA selenocysteine ass 97.7 2.4E-05 8.3E-10 55.6 3.7 36 3-38 52-91 (99)
116 1x4c_A Splicing factor, argini 97.7 3.4E-05 1.2E-09 56.4 4.4 36 4-39 51-91 (108)
117 2mss_A Protein (musashi1); RNA 97.7 3E-05 1E-09 52.5 3.7 34 3-37 41-74 (75)
118 1wel_A RNA-binding protein 12; 97.7 2.2E-05 7.4E-10 58.7 3.3 36 3-39 67-102 (124)
119 2cq4_A RNA binding motif prote 97.7 2.4E-05 8.2E-10 57.3 3.3 35 3-38 67-101 (114)
120 3smz_A Protein raver-1, ribonu 97.7 3.9E-05 1.3E-09 63.4 4.8 37 3-39 226-262 (284)
121 3tyt_A Heterogeneous nuclear r 97.7 4.4E-05 1.5E-09 62.5 4.9 37 3-39 42-78 (205)
122 2db1_A Heterogeneous nuclear r 97.6 3.4E-05 1.2E-09 57.8 3.9 36 3-39 61-96 (118)
123 2g4b_A Splicing factor U2AF 65 97.6 0.00013 4.3E-09 55.2 7.0 36 3-39 51-86 (172)
124 3r27_A HnRNP L, heterogeneous 97.6 4.5E-05 1.5E-09 57.9 4.5 37 3-39 57-95 (100)
125 2cq2_A Hypothetical protein LO 97.6 5.9E-05 2E-09 58.5 5.2 36 3-38 63-103 (114)
126 2jwn_A Embryonic polyadenylate 97.6 4.8E-05 1.7E-09 56.2 4.4 36 3-39 78-113 (124)
127 3n9u_C Cleavage and polyadenyl 97.6 5.2E-05 1.8E-09 60.1 4.9 36 3-38 99-134 (156)
128 2dis_A Unnamed protein product 97.6 5.7E-05 1.9E-09 54.5 4.2 36 3-38 52-89 (109)
129 2dnn_A RNA-binding protein 12; 97.6 2.7E-05 9.2E-10 58.8 2.5 40 3-43 56-95 (109)
130 2lea_A Serine/arginine-rich sp 97.6 3.9E-05 1.3E-09 59.0 3.4 37 3-39 89-125 (135)
131 2cq1_A PTB-like protein L; RRM 97.6 8.7E-05 3E-09 55.3 5.1 37 3-39 51-89 (101)
132 1wg5_A Heterogeneous nuclear r 97.6 8.2E-05 2.8E-09 54.1 4.7 41 3-44 57-97 (104)
133 2lmi_A GRSF-1, G-rich sequence 97.6 4.1E-05 1.4E-09 56.0 3.0 36 3-39 55-90 (107)
134 1wex_A Hypothetical protein (r 97.5 6.9E-05 2.3E-09 56.0 4.2 37 3-39 51-89 (104)
135 2lcw_A RNA-binding protein FUS 96.7 1.2E-05 4.2E-10 59.1 0.0 36 3-38 57-92 (116)
136 1x4d_A Matrin 3; structural ge 97.5 7.7E-05 2.6E-09 56.1 4.2 37 3-39 52-90 (102)
137 2ad9_A Polypyrimidine tract-bi 97.5 9.7E-05 3.3E-09 57.4 4.8 37 3-39 67-105 (119)
138 3smz_A Protein raver-1, ribonu 97.5 0.00028 9.6E-09 58.2 7.6 37 3-39 57-93 (284)
139 2hgl_A HNRPF protein, heteroge 97.5 6.9E-05 2.4E-09 58.8 3.6 36 3-39 88-123 (136)
140 2cpy_A RNA-binding protein 12; 97.5 7.8E-05 2.7E-09 55.1 3.7 36 3-39 57-92 (114)
141 3zzy_A Polypyrimidine tract-bi 97.5 0.00023 7.9E-09 56.4 6.6 55 3-57 65-126 (130)
142 1x4f_A Matrin 3; structural ge 97.5 0.00012 3.9E-09 56.4 4.7 37 3-39 62-100 (112)
143 1s79_A Lupus LA protein; RRM, 97.5 8.8E-05 3E-09 55.0 3.9 37 2-39 51-87 (103)
144 1sjq_A Polypyrimidine tract-bi 97.4 7.9E-05 2.7E-09 56.9 3.5 37 3-39 52-90 (105)
145 1x4e_A RNA binding motif, sing 97.4 4E-05 1.4E-09 53.0 1.5 35 3-37 47-81 (85)
146 1uaw_A Mouse-musashi-1; RNP-ty 97.4 7.1E-05 2.4E-09 50.5 2.7 35 3-38 42-76 (77)
147 1wez_A HnRNP H', FTP-3, hetero 97.4 9.4E-05 3.2E-09 54.3 3.4 36 3-39 55-90 (102)
148 1fje_B Nucleolin RBD12, protei 97.4 0.00015 5.3E-09 55.2 4.6 36 3-39 54-89 (175)
149 1sjr_A Polypyrimidine tract-bi 97.4 0.00035 1.2E-08 57.5 6.9 51 3-53 84-140 (164)
150 2dh8_A DAZ-associated protein 97.4 7E-05 2.4E-09 53.8 2.3 35 3-38 58-92 (105)
151 2e5i_A Heterogeneous nuclear r 97.4 0.00017 5.8E-09 56.3 4.6 36 4-39 62-100 (124)
152 4f02_A Polyadenylate-binding p 97.4 0.00025 8.7E-09 57.0 5.7 37 3-39 57-93 (213)
153 2adc_A Polypyrimidine tract-bi 97.3 0.00018 6.3E-09 58.5 4.7 37 3-39 72-108 (229)
154 1x4b_A Heterogeneous nuclear r 97.3 0.00015 5.2E-09 53.1 3.6 35 3-38 69-103 (116)
155 3pgw_A U1-A; protein-RNA compl 97.3 0.00021 7.2E-09 58.9 4.9 36 3-38 52-87 (282)
156 1qm9_A Polypyrimidine tract-bi 97.3 0.00013 4.5E-09 57.0 3.5 37 3-39 41-77 (198)
157 2yh0_A Splicing factor U2AF 65 97.3 0.00014 4.6E-09 56.2 3.5 35 3-38 51-85 (198)
158 2m2b_A RNA-binding protein 10; 97.3 8E-05 2.7E-09 56.3 2.1 35 3-38 67-105 (131)
159 2qfj_A FBP-interacting repress 97.3 0.00022 7.5E-09 55.8 4.7 37 3-39 70-106 (216)
160 3q2s_C Cleavage and polyadenyl 97.3 0.00012 4E-09 61.3 3.0 36 3-38 112-147 (229)
161 2ghp_A U4/U6 snRNA-associated 97.3 0.00073 2.5E-08 56.0 7.5 37 3-39 159-195 (292)
162 3s7r_A Heterogeneous nuclear r 97.2 0.00032 1.1E-08 48.6 4.1 34 3-37 53-86 (87)
163 2rs2_A Musashi-1, RNA-binding 97.1 0.00038 1.3E-08 51.2 4.2 35 3-38 67-101 (109)
164 2hgn_A Heterogeneous nuclear r 97.1 0.00015 5.2E-09 57.1 1.7 38 3-41 86-123 (139)
165 3nmr_A Cugbp ELAV-like family 97.1 0.0017 5.9E-08 48.7 7.4 36 3-38 47-85 (175)
166 2e5g_A U6 snRNA-specific termi 97.1 0.00029 9.8E-09 49.9 2.7 34 5-39 47-80 (94)
167 2d9o_A DNAJ (HSP40) homolog, s 97.0 0.00052 1.8E-08 51.3 4.1 35 2-38 53-87 (100)
168 1iqt_A AUF1, heterogeneous nuc 97.0 0.00035 1.2E-08 47.0 2.8 34 3-37 41-74 (75)
169 3sde_A Paraspeckle component 1 97.0 0.00072 2.5E-08 56.1 5.0 37 3-39 58-94 (261)
170 2dnl_A Cytoplasmic polyadenyla 97.0 0.00075 2.6E-08 49.7 4.5 41 3-45 52-92 (114)
171 2ghp_A U4/U6 snRNA-associated 97.0 0.0015 5E-08 54.1 6.6 36 3-39 81-116 (292)
172 2cqg_A TDP-43, TAR DNA-binding 97.0 0.00083 2.8E-08 48.0 4.5 34 3-38 57-90 (103)
173 2hgm_A HNRPF protein, heteroge 96.9 0.0002 7E-09 55.7 1.1 36 3-39 84-119 (126)
174 2dha_A FLJ20171 protein; RRM d 96.8 0.00041 1.4E-08 53.5 2.1 36 3-39 68-103 (123)
175 1l3k_A Heterogeneous nuclear r 96.7 0.0016 5.5E-08 50.1 4.6 36 3-39 55-90 (196)
176 3sde_A Paraspeckle component 1 96.6 0.0018 6E-08 53.8 4.6 37 3-39 137-177 (261)
177 2i2y_A Fusion protein consists 96.6 0.0024 8.1E-08 48.8 4.5 37 2-39 12-49 (150)
178 2cjk_A Nuclear polyadenylated 96.5 0.0017 5.7E-08 48.7 3.4 68 3-83 45-112 (167)
179 2xs2_A Deleted in azoospermia- 96.1 0.0016 5.4E-08 46.4 1.4 34 3-38 50-83 (102)
180 2dnr_A Synaptojanin-1; RRM dom 96.1 0.006 2.1E-07 46.4 4.6 40 4-45 50-89 (91)
181 3tht_A Alkylated DNA repair pr 95.8 0.021 7.2E-07 51.6 7.6 71 3-81 56-131 (345)
182 1ufw_A Synaptojanin 2; RNP dom 95.7 0.0084 2.9E-07 46.0 3.8 32 5-37 60-91 (95)
183 2j8a_A Histone-lysine N-methyl 94.4 0.019 6.6E-07 46.6 2.6 37 3-39 48-94 (136)
184 2d9n_A Cleavage and polyadenyl 94.3 0.016 5.6E-07 41.6 1.7 31 40-70 5-35 (77)
185 3u1l_A PRE-mRNA-splicing facto 94.2 0.034 1.2E-06 47.9 3.8 26 3-28 179-204 (240)
186 1m9o_A Tristetraproline; Cys3H 94.0 0.031 1.1E-06 39.1 2.7 32 38-69 5-37 (77)
187 2kn4_A Immunoglobulin G-bindin 93.3 0.16 5.5E-06 38.4 5.8 25 2-26 12-36 (158)
188 3d2q_A Muscleblind-like protei 93.2 0.02 6.7E-07 40.5 0.5 25 44-68 5-30 (70)
189 3d2w_A TAR DNA-binding protein 93.2 0.091 3.1E-06 37.2 4.1 32 3-38 48-81 (89)
190 1wf0_A TDP-43, TAR DNA-binding 92.6 0.042 1.4E-06 38.0 1.5 32 3-38 42-75 (88)
191 2l9w_A U4/U6 snRNA-associated- 92.5 0.14 4.6E-06 40.9 4.4 34 4-37 63-96 (117)
192 2e5s_A Otthump00000018578; ZF- 92.4 0.057 1.9E-06 40.9 2.1 35 41-79 52-86 (98)
193 3d2n_A Muscleblind-like protei 92.3 0.051 1.7E-06 40.2 1.6 27 43-69 7-34 (83)
194 2rhk_C Cleavage and polyadenyl 92.0 0.043 1.5E-06 39.3 1.0 31 40-70 11-41 (72)
195 3d2q_A Muscleblind-like protei 91.8 0.041 1.4E-06 38.9 0.7 28 40-68 37-64 (70)
196 2rpp_A Muscleblind-like protei 91.2 0.066 2.3E-06 40.2 1.3 26 44-69 16-42 (89)
197 2cqe_A KIAA1064 protein; CCCH 91.1 0.12 4.1E-06 38.9 2.6 25 45-69 36-61 (98)
198 2rhk_C Cleavage and polyadenyl 91.1 0.055 1.9E-06 38.7 0.7 48 21-71 21-70 (72)
199 2d9m_A Zinc finger CCCH-type d 91.0 0.071 2.4E-06 38.9 1.2 33 39-76 16-48 (69)
200 2d9n_A Cleavage and polyadenyl 88.9 0.12 4.1E-06 37.0 1.0 47 21-70 15-63 (77)
201 2e5s_A Otthump00000018578; ZF- 88.8 0.041 1.4E-06 41.7 -1.6 27 44-70 19-46 (98)
202 3d2n_A Muscleblind-like protei 87.9 0.23 8E-06 36.6 2.0 33 43-79 41-73 (83)
203 3u1l_A PRE-mRNA-splicing facto 87.6 0.13 4.4E-06 44.3 0.5 30 47-76 72-101 (240)
204 1m9o_A Tristetraproline; Cys3H 87.2 0.12 3.9E-06 36.2 0.0 27 42-68 47-74 (77)
205 1owx_A Lupus LA protein, SS-B, 86.5 0.8 2.7E-05 35.7 4.5 34 5-38 57-93 (121)
206 2cqe_A KIAA1064 protein; CCCH 86.4 0.5 1.7E-05 35.5 3.1 26 42-67 10-35 (98)
207 2rpp_A Muscleblind-like protei 83.6 0.54 1.8E-05 35.2 2.1 33 43-79 49-81 (89)
208 1wey_A Calcipressin 1; structu 83.3 0.95 3.3E-05 35.1 3.5 38 5-42 48-85 (104)
209 2fc6_A Nuclear, target of EGR1 82.6 0.39 1.4E-05 33.2 1.0 29 43-71 18-47 (50)
210 1wwh_A Nucleoporin 35, nucleop 75.1 1.7 5.9E-05 34.2 2.7 35 5-41 61-95 (119)
211 3p3d_A Nucleoporin 53; structu 74.9 2.7 9.4E-05 33.8 3.8 34 4-38 63-96 (132)
212 3pim_A Peptide methionine sulf 67.8 2.2 7.4E-05 36.1 1.8 59 8-70 123-186 (187)
213 1uw4_A UPF3X; nonsense mediate 38.4 39 0.0013 25.0 4.2 37 3-39 45-86 (91)
214 3h7h_B Transcription elongatio 37.7 21 0.00071 27.1 2.7 27 1-27 49-75 (106)
215 1hy9_A Cocaine and amphetamine 37.2 13 0.00043 24.8 1.2 14 55-68 26-39 (41)
216 2l08_A Regulator of nonsense t 31.2 49 0.0017 25.1 3.8 36 4-39 54-94 (97)
217 3bqh_A PILB, peptide methionin 29.1 32 0.0011 29.0 2.7 53 8-64 98-155 (193)
218 3bsu_A Ribonuclease H1, RNAse 25.4 48 0.0016 22.2 2.6 20 3-22 31-50 (53)
219 4gwb_A Peptide methionine sulf 22.3 40 0.0014 27.8 2.0 54 8-63 94-153 (168)
220 2g0c_A ATP-dependent RNA helic 22.2 63 0.0022 21.7 2.7 33 5-38 42-74 (76)
221 3e0m_A Peptide methionine sulf 21.2 25 0.00084 31.9 0.6 32 14-47 105-136 (313)
No 1
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=3e-12 Score=99.02 Aligned_cols=44 Identities=23% Similarity=0.595 Sum_probs=41.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
..|+|||+|.++++|.+|+++||||||+||+|.|+|+|+++|..
T Consensus 70 ~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 70 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 113 (118)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhccc
Confidence 35999999999999999999999999999999999999988853
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=1.4e-11 Score=92.70 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=41.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
..|+|||+|.++++|.+|+++|||+||+||+|.|+|+++..|..
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 46999999999999999999999999999999999999888753
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=1.2e-11 Score=95.20 Aligned_cols=44 Identities=32% Similarity=0.637 Sum_probs=41.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
..|+|||+|.++++|.+|++.|||+||+||+|.|+|+++++|..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHH
Confidence 36999999999999999999999999999999999999988853
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.10 E-value=3.6e-11 Score=90.56 Aligned_cols=45 Identities=27% Similarity=0.570 Sum_probs=42.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 46 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA 46 (216)
..|++||+|.++++|++|++.|||+||+||+|.|+|.+.+.|...
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence 579999999999999999999999999999999999988888654
No 5
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.00 E-value=3.1e-10 Score=84.97 Aligned_cols=38 Identities=50% Similarity=0.935 Sum_probs=36.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|++||+|.++++|++|++.|||++|+||+|.|+|+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 57999999999999999999999999999999999997
No 6
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.5e-08 Score=75.27 Aligned_cols=44 Identities=32% Similarity=0.578 Sum_probs=40.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec-cCCCccc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS-PVTDFRE 45 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs-PVtdF~e 45 (216)
..|++||+|.++++|++|++.|||++|+|++|.|+|. |.++|..
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQS 107 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCccc
Confidence 4799999999999999999999999999999999995 8888864
No 7
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.52 E-value=5.5e-07 Score=82.54 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=44.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecccccCcCCCCCCC
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYC 62 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~C 62 (216)
..|++||.|.++++|++||..|||.+|.|++|.|+|...........+.+-.|.+..++.+
T Consensus 143 ~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ggG~gg~~~gg 203 (437)
T 3pgw_S 143 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203 (437)
T ss_pred ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCCCCCCcCCCCCCCCCCC
Confidence 3699999999999999999999999999999999997433333333333333444433333
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 588999999999999999999999999999999986
No 9
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=2e-06 Score=63.44 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..|.|++|.|++.
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 489999999999999999999999999999999996
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.15 E-value=2.6e-06 Score=58.75 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=34.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 49 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 49 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 588999999999999999999999999999999885
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=2.4e-06 Score=60.07 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|.+||+|.++++|++|+..|||..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 57 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 589999999999999999999999999999999986
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.13 E-value=2.6e-06 Score=63.86 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=35.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|++|++.|||..+.|++|.|++.+
T Consensus 48 rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 48 LGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999999999999975
No 13
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.12 E-value=2.7e-06 Score=59.96 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|||..+.|++|.++++.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5899999999999999999999999999999999863
No 14
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=3.2e-06 Score=62.80 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=38.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 43 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF 43 (216)
.|..||.|.+.++|++|++.|||..|.|++|.++|.+...|
T Consensus 46 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 46 GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 58899999999999999999999999999999999876555
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.11 E-value=3.3e-06 Score=58.45 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 589999999999999999999999999999999986
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=3.7e-06 Score=59.16 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|++.|||..+.|++|.++|.
T Consensus 58 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 58 KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 589999999999999999999999999999999985
No 17
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.10 E-value=3.7e-06 Score=58.14 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 589999999999999999999999999999999986
No 18
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.10 E-value=3.4e-06 Score=59.50 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=37.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 42 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtd 42 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.|...
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 5899999999999999999999999999999999988544
No 19
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.09 E-value=4.2e-06 Score=57.47 Aligned_cols=36 Identities=28% Similarity=0.620 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 589999999999999999999999999999999986
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=3.7e-06 Score=60.14 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=35.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|..||+|.++++|++|++.|||..|.|++|.+++.
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3589999999999999999999999999999999996
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=4.4e-06 Score=58.88 Aligned_cols=37 Identities=38% Similarity=0.558 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|||..+.|++|.+++..
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 47 KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5899999999999999999999999999999999973
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=4.1e-06 Score=59.17 Aligned_cols=36 Identities=22% Similarity=0.639 Sum_probs=34.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 589999999999999999999999999999999996
No 23
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=3.5e-06 Score=60.29 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=35.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|.+||.|.++++|++|++.|||..|.|++|.+++..
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 36899999999999999999999999999999999963
No 24
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=4e-06 Score=60.01 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 589999999999999999999999999999999996
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=5e-06 Score=59.19 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|.+||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 50 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5899999999999999999999999999999999974
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.06 E-value=4.6e-06 Score=60.12 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|||..+.|++|.++|+.
T Consensus 70 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 70 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5899999999999999999999999999999999864
No 27
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=4.4e-06 Score=60.04 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+..|||..|.|++|.+++..
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 5899999999999999999999999999999999963
No 28
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=5.2e-06 Score=59.00 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 589999999999999999999999999999999996
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.04 E-value=5.6e-06 Score=58.95 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|++|++.|||..+.|++|.+++..
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999999973
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=5.8e-06 Score=59.39 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|.+||.|.++++|++|+..|||..|.|++|.+++.
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 689999999999999999999999999999999996
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=5e-06 Score=59.06 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 4899999999999999999999999999999999963
No 32
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.02 E-value=1.6e-05 Score=59.72 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|.+||+|.++++|++|++.|+|..+.|++|.++++.
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4899999999999999999999999999999999975
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=6.1e-06 Score=59.30 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 57 QGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 589999999999999999999999999999999996
No 34
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=6e-06 Score=59.14 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=34.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..|.|++|.+++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 53 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 689999999999999999999999999999999996
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=6.2e-06 Score=59.26 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+..|||..|.|++|.+++..
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 57 KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 5899999999999999999999999999999999963
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.01 E-value=6e-06 Score=60.42 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..|.|++|.|++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 589999999999999999999999999999999996
No 37
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=6.4e-06 Score=58.93 Aligned_cols=37 Identities=32% Similarity=0.590 Sum_probs=35.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+.|..||.|.+.++|++|+..|||..+.|++|.+++.
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3689999999999999999999999999999999996
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.01 E-value=4.9e-06 Score=58.65 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|++.|||..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 589999999999999999999999999999999985
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=7.5e-06 Score=58.85 Aligned_cols=37 Identities=22% Similarity=0.482 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHh-cCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~L-NGRwYaGR~I~aEfsP 39 (216)
.|.+||.|.++++|++|+..| ||..|.|++|.+++..
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 689999999999999999999 9999999999999973
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=6.4e-06 Score=60.09 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..|.|++|.+++.
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 589999999999999999999999999999999996
No 41
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.00 E-value=6.4e-06 Score=61.15 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.|+|.
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 689999999999999999999999999999999986
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.00 E-value=6.3e-06 Score=58.97 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 589999999999999999999999999999999985
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=6.7e-06 Score=59.19 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|.+||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 589999999999999999999999999999999986
No 44
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=6e-06 Score=59.07 Aligned_cols=37 Identities=30% Similarity=0.616 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|++|++.|||..|.|++|.+++..
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 5899999999999999999999999999999999963
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=7.1e-06 Score=58.92 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|+..|||..+.|++|.+++.
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 489999999999999999999999999999999996
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=6.5e-06 Score=59.88 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.|++.
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 589999999999999999999999999999999996
No 47
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.98 E-value=6.7e-06 Score=58.19 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 589999999999999999999999999999999997
No 48
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=6.9e-06 Score=58.72 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 689999999999999999999999999999999996
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=7.4e-06 Score=58.55 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 489999999999999999999999999999999996
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=4.5e-06 Score=59.96 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|+..|||..+.|++|.|++..
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 5899999999999999999999999999999999973
No 51
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.97 E-value=8.1e-06 Score=58.95 Aligned_cols=37 Identities=22% Similarity=0.481 Sum_probs=35.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
+.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3588999999999999999999999999999999997
No 52
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.97 E-value=8.3e-06 Score=57.64 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 489999999999999999999999999999999996
No 53
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.97 E-value=2.6e-05 Score=58.20 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|++.|||..+.|++|.+.+..
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4899999999999999999999999999999999975
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.96 E-value=8.7e-06 Score=60.17 Aligned_cols=36 Identities=36% Similarity=0.559 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.++++
T Consensus 68 ~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 68 KGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 589999999999999999999999999999999996
No 55
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=7.2e-06 Score=57.88 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=34.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcC-cccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSG-RFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNG-RwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.||| ..+.|++|.+++..
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 58999999999999999999999 99999999999963
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=8.9e-06 Score=59.24 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 5899999999999999999999999999999999963
No 57
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=9.4e-06 Score=59.21 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+..|||..+.|++|.++|..
T Consensus 67 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 67 RGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 5899999999999999999999999999999999963
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=9.4e-06 Score=58.23 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 588999999999999999999999999999999996
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.94 E-value=1e-05 Score=58.61 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|.+|++.|||..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 57 NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 589999999999999999999999999999999996
No 60
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.94 E-value=5.9e-06 Score=61.59 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.3
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
|..||.|.++++|++||+.|||..|.|++|.+.++.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 899999999999999999999999999996655543
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.94 E-value=6.9e-06 Score=57.56 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 589999999999999999999999999999999996
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.94 E-value=8.7e-06 Score=60.89 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5899999999999999999999999999999999963
No 63
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.93 E-value=1.1e-05 Score=58.53 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 589999999999999999999999999999999996
No 64
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.93 E-value=9e-06 Score=59.63 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..|.|++|.+++.
T Consensus 67 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 489999999999999999999999999999999996
No 65
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.93 E-value=9e-06 Score=63.06 Aligned_cols=38 Identities=26% Similarity=0.633 Sum_probs=35.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||.|.++++|++|+..|||..|.|++|.++|..
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 36999999999999999999999999999999999963
No 66
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=56.27 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 4689999999999999999999999999999999963
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.91 E-value=1.3e-05 Score=58.25 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC-eeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG-RPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG-R~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..|.| ++|.+.+.
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 5899999999999999999999999999 99999985
No 68
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.2e-05 Score=56.50 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 588999999999999999999999999999999996
No 69
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=9.2e-06 Score=58.10 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 489999999999999999999999999999999996
No 70
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=9.1e-06 Score=59.86 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 589999999999999999999999999999999996
No 71
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.90 E-value=1.2e-05 Score=59.66 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 488999999999999999999999999999999985
No 72
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.90 E-value=6.5e-06 Score=58.26 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=33.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 589999999999999999999999999999999986
No 73
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.2e-05 Score=58.52 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 489999999999999999999999999999999996
No 74
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.90 E-value=1.5e-05 Score=59.28 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=35.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||.|.++++|++|++.|||..+.|++|.++++.
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35899999999999999999999999999999999974
No 75
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.89 E-value=1.2e-05 Score=57.46 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++ |||..+.|++|.+++.
T Consensus 58 ~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 58 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp TTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 5899999999999999999 9999999999999996
No 76
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.89 E-value=1.2e-05 Score=60.66 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.-
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999999999999974
No 77
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1e-05 Score=62.32 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=34.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
|..||.|.++++|.+|++.|||..+.||+|.+.|.+
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 789999999999999999999999999999999975
No 78
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.3e-05 Score=57.23 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|++|+..|||..+.|++|.+++..
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5899999999999999999999999999999999963
No 79
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.89 E-value=1.2e-05 Score=61.07 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++||+.|||..|.|++|.|++.
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 589999999999999999999999999999999986
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=1.6e-05 Score=56.10 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=34.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 568999999999999999999999999999999996
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.88 E-value=8.9e-06 Score=59.39 Aligned_cols=41 Identities=15% Similarity=0.331 Sum_probs=37.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCe-eeEEEec-cCCCc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFS-PVTDF 43 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR-~I~aEfs-PVtdF 43 (216)
.|..||.|.++++|++|+..|||..|.|+ +|.+++. ++..|
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKY 103 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchHhhh
Confidence 59999999999999999999999999999 9999996 44444
No 82
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=55.47 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=33.9
Q ss_pred cceEEEEeCCHHHHHHHHHHh-cCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~L-NGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..| ||..+.|++|.+++.
T Consensus 48 kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 489999999999999999999 999999999999874
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.88 E-value=1.2e-05 Score=59.49 Aligned_cols=36 Identities=36% Similarity=0.681 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..|.|++|.++|.
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 589999999999999999999999999999999996
No 84
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=1.5e-05 Score=56.80 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=34.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccC--CeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYA--GRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYa--GR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+. |++|.+++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 479999999999999999999999999 999999996
No 85
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.1e-05 Score=57.79 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+.|++|.+++.
T Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 45 NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 589999999999999999999999999999999997
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=1.4e-05 Score=56.25 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++ |||..+.|++|.+.++.
T Consensus 50 ~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp EEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred ceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 5899999999999999999 99999999999999863
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.87 E-value=1.5e-05 Score=58.23 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+.++|.+|+..|||..+.|++|.+++..
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5899999999999999999999999999999999963
No 88
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.86 E-value=5.9e-06 Score=57.30 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCe-eeEE
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGR-PIIV 35 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR-~I~a 35 (216)
.|..||.|.++++|++|++.|||..+.|+ +|.+
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 59999999999999999999999999999 8865
No 89
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=57.48 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++..
T Consensus 37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 37 PGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 5899999999999999999999999999999999973
No 90
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.85 E-value=1.2e-05 Score=59.16 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=34.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc----ccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGR----FYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGR----wYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||. .++||+|.++|.-
T Consensus 53 rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 53 RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred ceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 589999999999999999999997 5899999999863
No 91
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=1.9e-05 Score=57.10 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhc------CcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLS------GRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN------GRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|+..|| |..+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a 98 (111)
T 1x4h_A 57 KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA 98 (111)
T ss_dssp CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEEC
Confidence 6899999999999999999999 99999999999996
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.84 E-value=1.8e-05 Score=56.79 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=34.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC---eeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG---RPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG---R~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.| ++|.+++.
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 5899999999999999999999999988 99999996
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.3e-05 Score=58.76 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||.|.++++|++|+..||+ .|.|++|.+++..
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred cceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 358999999999999999999999 9999999999973
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.83 E-value=1.3e-05 Score=61.42 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|.+||.|.++++|++|++.|||..+.|++|.+++.-
T Consensus 88 ~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 88 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 5899999999999999999999999999999999863
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.83 E-value=1.6e-05 Score=57.27 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=34.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+ .|||..+.|++|.+++..
T Consensus 56 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 56 KGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred ceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 589999999999999999 999999999999999963
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2e-05 Score=56.80 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=34.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+ .|||..+.|++|.+++..
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEcc
Confidence 589999999999999999 999999999999999963
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=2.2e-05 Score=55.92 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++ |||..+.|++|.+++.
T Consensus 52 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 52 RGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 5899999999999999999 9999999999999996
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.81 E-value=2e-05 Score=59.75 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|+.||+|.++++|++|+++|||--+.|++|.|++-
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 699999999999999999999999999999999985
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.81 E-value=2.2e-05 Score=56.44 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc---CCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY---aGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+ .|++|.+++..
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 55 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 58999999999999999999999987 99999999963
No 100
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.81 E-value=1.4e-05 Score=58.39 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++|.+++.
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 589999999999999999999999999999999996
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=57.81 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcc-cCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRF-YAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRw-YaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|||.. +.|++|.+++.
T Consensus 51 ~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 51 KGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred cceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 5899999999999999999999999 99999999986
No 102
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.80 E-value=1.7e-05 Score=57.00 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhc-CcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLS-GRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN-GRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|+ +-.+.|++|.++|+
T Consensus 44 rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 44 RGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp SSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 5899999999999999999885 55799999999996
No 103
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.79 E-value=8.2e-05 Score=55.39 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|.+|+..|||..+.|++|.+++..
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 4899999999999999999999999999999999963
No 104
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.79 E-value=2.1e-05 Score=63.40 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=34.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|++.|||..++|++|.|++.
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 588999999999999999999999999999999874
No 105
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.78 E-value=2.6e-05 Score=59.38 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=35.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|..||.|.+.++|.+|+..|||..|.|++|.++|.
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3589999999999999999999999999999999997
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.78 E-value=2.4e-05 Score=60.34 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++||..|||..+.|++|.|++..
T Consensus 81 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 81 CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999999999999974
No 107
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.77 E-value=1.9e-05 Score=54.74 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+ .|||..|.|++|.+++.
T Consensus 48 ~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp CEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred ceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 689999999999999999 99999999999999986
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.76 E-value=2.1e-05 Score=56.83 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=34.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|..||.|.++++|.+|+ .|||..|.|++|.+++.
T Consensus 60 ~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 3689999999999999999 99999999999999986
No 109
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=1.7e-05 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=34.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.+.++|++|+..|||..+.|++|.+++.
T Consensus 63 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 63 KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 589999999999999999999999999999998874
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.74 E-value=3.8e-05 Score=58.29 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=36.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 42 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtd 42 (216)
.|..||.|.+.++|++|+..|||..+.|++|.+++..-..
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 6899999999999999999999999999999999974333
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=3.6e-05 Score=56.14 Aligned_cols=36 Identities=19% Similarity=0.515 Sum_probs=33.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc--------CCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY--------AGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY--------aGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..+ .|++|.|.|.
T Consensus 66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a 109 (114)
T 1x5o_A 66 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFS 109 (114)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEcc
Confidence 58999999999999999999999999 6888999886
No 112
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.72 E-value=3e-05 Score=53.53 Aligned_cols=34 Identities=15% Similarity=0.482 Sum_probs=32.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|..||.|.++++|++|+ .|||..+.|++|.++.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 589999999999999999 9999999999999873
No 113
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=5e-05 Score=53.63 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=33.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
|..||.|.++++|++|+..|||..+.|++|.+++..
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 458999999999999999999999999999999975
No 114
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.71 E-value=1.9e-05 Score=55.20 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=33.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.+++ |++|+..|||..+.|++|.++++.
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 589999999999 999999999999999999999974
No 115
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=2.4e-05 Score=55.57 Aligned_cols=36 Identities=19% Similarity=0.527 Sum_probs=34.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCee----eEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRP----IIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~----I~aEfs 38 (216)
.|..||.|.++++|++|++.|||..+.|++ |.+++.
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 52 AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence 489999999999999999999999999999 988886
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=3.4e-05 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=34.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCC-----eeeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAG-----RPIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaG-----R~I~aEfsP 39 (216)
|..||.|.++++|++||+.|||..|.| ++|.+++..
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 899999999999999999999999999 999999863
No 117
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.69 E-value=3e-05 Score=52.49 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=32.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|..||.|.++++|++|+. |||..+.|++|.+++
T Consensus 41 ~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 5899999999999999998 999999999999876
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=2.2e-05 Score=58.74 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++||. |||..+.|++|.+++..
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 5899999999999999999 99999999999999864
No 119
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=2.4e-05 Score=57.25 Aligned_cols=35 Identities=40% Similarity=0.573 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+ .|||..|.|++|.+++.
T Consensus 67 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 67 KGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp CCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 589999999999999999 99999999999999986
No 120
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.66 E-value=3.9e-05 Score=63.43 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=35.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|.+||+|.+.++|.+|+..|||.+|+|++|.+.|..
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 6899999999999999999999999999999999974
No 121
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.65 E-value=4.4e-05 Score=62.51 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=35.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|||..+.|++|.++++.
T Consensus 42 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 42 PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 5899999999999999999999999999999999973
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.65 E-value=3.4e-05 Score=57.77 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=33.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++ |||..+.|++|.+.++.
T Consensus 61 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 5899999999999999999 99999999999998864
No 123
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.65 E-value=0.00013 Score=55.19 Aligned_cols=36 Identities=14% Similarity=0.449 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|+ .|||..+.|++|.+++..
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc
Confidence 589999999999999999 999999999999998853
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.64 E-value=4.5e-05 Score=57.90 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=34.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc--ccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGR--wYaGR~I~aEfsP 39 (216)
.|..||.|.++++|.+|++.|||- ++.|++|.++|+.
T Consensus 57 kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 57 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 589999999999999999999987 4899999999984
No 125
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=5.9e-05 Score=58.46 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc-----CCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY-----AGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY-----aGR~I~aEfs 38 (216)
.|+.||+|.++++|++|++.|||+.+ .|++|++.|.
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 48999999999999999999999988 7999999996
No 126
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.63 E-value=4.8e-05 Score=56.22 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+ .|||..|.|++|.+++..
T Consensus 78 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp EEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred ccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 689999999999999999 899999999999999963
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.63 E-value=5.2e-05 Score=60.11 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++||..|||..+.|++|.|++.
T Consensus 99 kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 99 KGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp EEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 589999999999999999999999999999999986
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=5.7e-05 Score=54.52 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhc--CcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN--GRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|++.|+ +-.+.|++|.+++.
T Consensus 52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp CCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 5899999999999999999996 58999999999996
No 129
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=2.7e-05 Score=58.78 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 43 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF 43 (216)
.|+.||+|.++++|++|+ .|||..+.||.|.+......+|
T Consensus 56 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~ 95 (109)
T 2dnn_A 56 NGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQW 95 (109)
T ss_dssp CSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHH
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccch
Confidence 699999999999999999 7999999999999877643444
No 130
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.57 E-value=3.9e-05 Score=58.98 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|||..+.|++|.|++..
T Consensus 89 ~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 89 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp CSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5899999999999999999999999999999999973
No 131
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=8.7e-05 Score=55.29 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhc--CcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN--GRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|+ +..+.|++|.++|+.
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4899999999999999999875 678999999999974
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.56 E-value=8.2e-05 Score=54.11 Aligned_cols=41 Identities=32% Similarity=0.365 Sum_probs=36.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 44 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~ 44 (216)
.|..||.|.++++|++|+.. |+..++||+|.+.++....+.
T Consensus 57 ~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 57 TGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp CSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSC
T ss_pred ceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHH
Confidence 58999999999999999998 999999999999887544443
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.55 E-value=4.1e-05 Score=56.03 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+. |||.+++|++|.+.++.
T Consensus 55 ~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 55 RGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred eeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 5899999999999999999 99999999999988753
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.54 E-value=6.9e-05 Score=55.99 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc--ccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGR--wYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|++.|++. .+.|++|.++|+.
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 489999999999999999999864 5999999999974
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.68 E-value=1.2e-05 Score=59.12 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|||..|.|++|.|++.
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 589999999999999999999999999999999996
No 136
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=7.7e-05 Score=56.10 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc--ccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGR--wYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.||+. .+.|++|.++++.
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 388999999999999999999975 4999999999974
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=9.7e-05 Score=57.37 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcC--cccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSG--RFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNG--RwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.|++ ..+.|++|.++|+.
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 48999999999999999999985 68999999999974
No 138
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.49 E-value=0.00028 Score=58.24 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=35.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|+..|||..+.|++|.+++.|
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 5899999999999999999999999999999999976
No 139
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.48 E-value=6.9e-05 Score=58.78 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++ |||..+.||+|.+.++.
T Consensus 88 rG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 88 SGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 5899999999999999999 99999999999998864
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=7.8e-05 Score=55.08 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++||.. ||..+.|++|.+++..
T Consensus 57 ~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 57 LGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp SSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 68999999999999999998 9999999999998863
No 141
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.47 E-value=0.00023 Score=56.37 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=43.9
Q ss_pred cce-EEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEeccC----CCcccceecccccCcCC
Q 027939 3 VGN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPV----TDFREATCRQYEENTCN 57 (216)
Q Consensus 3 ~GN-VYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfsPV----tdF~eA~Crq~~~g~C~ 57 (216)
.|+ .||+|.++++|++|++.|||.-+.| ++|.++|+.. ..+....++.|..-..|
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v~~n~~~srDyt~~~lp 126 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 126 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCCCCCSSSEEETTCTTCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeEEecCCCcccCCCCCCC
Confidence 366 9999999999999999999999988 9999999844 34455677777544443
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00012 Score=56.39 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=33.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcC--cccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSG--RFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNG--RwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.||+ ..+.|++|.|+|+.
T Consensus 62 kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 62 KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 58999999999999999999964 67999999999973
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=8.8e-05 Score=54.96 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=33.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..|..||.|.++++|++|+. |+|..|.|++|.+.+..
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 36999999999999999999 99999999999998753
No 144
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=7.9e-05 Score=56.92 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhc--CcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LN--GRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|+ +..+.|++|.++|+.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4899999999999999999986 479999999999974
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=4e-05 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=32.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|..||.|.++++|++|++.|||.-+.|+.|.+..
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 47 KGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 58999999999999999999999999999997654
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=7.1e-05 Score=50.54 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=32.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|+ -.+.|++|.+++.
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999 9999999999863
No 147
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=9.4e-05 Score=54.32 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=33.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|| .||+..+.||+|.+.++.
T Consensus 55 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 55 TGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp EEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred eeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 589999999999999999 589999999999998864
No 148
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.40 E-value=0.00015 Score=55.19 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|+ .|||..+.|++|.+++..
T Consensus 54 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 54 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp TTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred ccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 589999999999999999 599999999999999974
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.38 E-value=0.00035 Score=57.48 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=40.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEeccCC----Ccccceeccccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVT----DFREATCRQYEE 53 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfsPVt----dF~eA~Crq~~~ 53 (216)
.|+.||+|.++++|++|++.|||..+.| ++|.++|+-.. .+....++.|..
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~vk~nn~rsrDyt~ 140 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTR 140 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCCCCCCSSSEEESSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcccccccCCCCccccC
Confidence 4789999999999999999999999955 99999997433 244455666543
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=7e-05 Score=53.83 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=33.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+.. ||..|.|++|.+++.
T Consensus 58 ~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 58 RGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp EEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 48999999999999999999 999999999999986
No 151
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.37 E-value=0.00017 Score=56.25 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=32.9
Q ss_pred ce-EEEEeCCHHHHHHHHHHhcCcccCC--eeeEEEecc
Q 027939 4 GN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSP 39 (216)
Q Consensus 4 GN-VYVkF~~ee~A~~Av~~LNGRwYaG--R~I~aEfsP 39 (216)
|+ .||+|.++++|.+|+++|||..+.| ++|.++|+-
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 75 9999999999999999999998877 699999973
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.36 E-value=0.00025 Score=57.04 Aligned_cols=37 Identities=30% Similarity=0.591 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|++|++.||+..+.|++|.+.+..
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4899999999999999999999999999999998864
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.34 E-value=0.00018 Score=58.49 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|++.|||..|.|++|.+++..
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4899999999999999999999999999999999974
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00015 Score=53.10 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+.. +|..|.|++|.+++.
T Consensus 69 ~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 69 RGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp CSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 58999999999999999999 999999999999996
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.32 E-value=0.00021 Score=58.95 Aligned_cols=36 Identities=28% Similarity=0.599 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|.+|++.|||..+.|++|.+++.
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 52 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 589999999999999999999999999999999997
No 156
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.32 E-value=0.00013 Score=57.00 Aligned_cols=37 Identities=32% Similarity=0.472 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|++|+..|||..+.|++|.++++.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 4889999999999999999999999999999999974
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.32 E-value=0.00014 Score=56.23 Aligned_cols=35 Identities=14% Similarity=0.472 Sum_probs=33.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||+|.++++|++|+ .|||..+.|++|.+++.
T Consensus 51 ~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRP 85 (198)
T ss_dssp TTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCC
Confidence 589999999999999999 89999999999999985
No 158
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.31 E-value=8e-05 Score=56.28 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=33.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc----ccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGR----FYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGR----wYaGR~I~aEfs 38 (216)
.|+.||.|.++ +|.+|+..|||. .+.|++|.+++.
T Consensus 67 rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 67 RGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp CSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred ceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 58999999999 999999999999 999999999986
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.31 E-value=0.00022 Score=55.77 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|++.|||..+.|++|.+.+..
T Consensus 70 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 70 KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 5899999999999999999999999999999998753
No 160
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.29 E-value=0.00012 Score=61.33 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=34.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|+.||.|.++++|++||+.|||..|.|++|.|++.
T Consensus 112 kGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 112 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp EEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 589999999999999999999999999999999986
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.26 E-value=0.00073 Score=55.96 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=35.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|.+|+..|||..+.|++|.+.++.
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5899999999999999999999999999999999963
No 162
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.21 E-value=0.00032 Score=48.62 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=30.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|..||.|.++++|++|++. ++..+.|++|.+++
T Consensus 53 ~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 53 RGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp EEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred ccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 58999999999999999965 77789999999876
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.15 E-value=0.00038 Score=51.19 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=32.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+..|+ -.+.|++|.+++.
T Consensus 67 kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 67 RGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp TTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 5899999999999999999985 9999999999986
No 164
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.09 E-value=0.00015 Score=57.10 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCC
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 41 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVt 41 (216)
.|+.||+|.++++|++|| .||+..+.||+|.+.++...
T Consensus 86 rGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 86 TGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp SCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred ceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 689999999999999999 89999999999999886543
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.08 E-value=0.0017 Score=48.69 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccC---CeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYa---GR~I~aEfs 38 (216)
.|..||+|.++++|++|++.|||..+. +++|.+.+.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~ 85 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPA 85 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccc
Confidence 478999999999999999999997665 577777664
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=49.92 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=31.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
..||.|.++++|++|+. |||-.|.|++|.+++..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 68999999999999999 99999999999998753
No 167
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00052 Score=51.35 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=31.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
..|+.||+|.+.++|++|++.|++ +.|++|.+++.
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 369999999999999999999887 68999999986
No 168
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.03 E-value=0.00035 Score=47.01 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=31.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
.|..||.|.++++|++|++. ++.-+.|++|.+.+
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 41 RGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 58999999999999999995 89999999999876
No 169
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.99 E-value=0.00072 Score=56.12 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=35.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|.+|+..|||..+.|++|.+.++.
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 5899999999999999999999999999999999864
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00075 Score=49.73 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=33.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
.|..||.|.++++|++|++.|++ ++|+.|.+...+...-+.
T Consensus 52 ~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~~~~~~ 92 (114)
T 2dnl_A 52 KGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSPTIKDKP 92 (114)
T ss_dssp TSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCSSSCSEE
T ss_pred ccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCCCcCCCe
Confidence 68999999999999999999965 788888877765443333
No 171
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.97 E-value=0.0015 Score=54.15 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=33.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||+|.++++|.+|++ |||..+.|++|.+++.+
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC
Confidence 4899999999999999995 99999999999999863
No 172
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00083 Score=47.98 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=31.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+.. +-.+.|++|.+++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 57 KGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLP 90 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECC
T ss_pred cceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEec
Confidence 58999999999999999994 67999999999996
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.94 E-value=0.0002 Score=55.72 Aligned_cols=36 Identities=33% Similarity=0.325 Sum_probs=32.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|+.||+|.++++|++||+. ++..+.||+|.+..+.
T Consensus 84 rGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 84 TGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp CSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred ceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 69999999999999999985 7799999999987753
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00041 Score=53.51 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=32.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|+.||+|.++++|++||+. |+..+.||.|.+..+.
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 58999999999999999996 9999999999877653
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.71 E-value=0.0016 Score=50.05 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=33.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsP 39 (216)
.|..||.|.++++|.+|++. ++..+.|++|.+.+..
T Consensus 55 ~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred cceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 58999999999999999987 9999999999999863
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.62 E-value=0.0018 Score=53.77 Aligned_cols=37 Identities=32% Similarity=0.560 Sum_probs=32.8
Q ss_pred cceEEEEeCCHHHHHHHHHHh-cCcccC---CeeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSL-SGRFYA---GRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~L-NGRwYa---GR~I~aEfsP 39 (216)
.|..||.|.+.++|.+|+..| +|.|+. |++|.+++..
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 589999999999999999999 566666 9999999864
No 177
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.55 E-value=0.0024 Score=48.77 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=34.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHh-cCcccCCeeeEEEecc
Q 027939 2 QVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSP 39 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~L-NGRwYaGR~I~aEfsP 39 (216)
|.|..+|+|.+.++|++|++.| ||..+.| +|.+.+..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 7899999999999999999999 9999999 99998753
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.51 E-value=0.0017 Score=48.74 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=45.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCcccceecccccCcCCCCCCCCcccccCCCHHHHHHHHhhh
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRY 82 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~Lf~~~ 82 (216)
.|..||+|.++++|++|++. +..+.|++|.+.+.....-....+..|..+-- ...+.+-.+++|..|
T Consensus 45 ~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp-----------~~~t~~~l~~~F~~~ 111 (167)
T 2cjk_A 45 RGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIG-----------PDVRPKEFEEFFSQW 111 (167)
T ss_dssp CSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHHHHCEEEEEEEEC-----------TTCCHHHHHHHHHTT
T ss_pred cceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhccCCCeEEECCCC-----------CCCCHHHHHHHHHhC
Confidence 58999999999999999995 56899999998886432222233333322211 134566677788775
Q ss_pred h
Q 027939 83 R 83 (216)
Q Consensus 83 ~ 83 (216)
-
T Consensus 112 G 112 (167)
T 2cjk_A 112 G 112 (167)
T ss_dssp S
T ss_pred c
Confidence 3
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.15 E-value=0.0016 Score=46.44 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=31.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.|..||.|.++++|++|+. +|-.++|++|.+.+.
T Consensus 50 ~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 50 KGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred cceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 5899999999999999999 999999999998875
No 180
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.12 E-value=0.006 Score=46.38 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=34.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCCccc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 45 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~e 45 (216)
+..||.|.+.++|.+|++ |||--++||.|.+.+-- ++|-+
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt-~dW~~ 89 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS-PSGPS 89 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC-CSSCS
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC-CCccc
Confidence 457999999999999998 99999999999999953 37754
No 181
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.83 E-value=0.021 Score=51.56 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=51.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc---CCe--eeEEEeccCCCcccceecccccCcCCCCCCCCcccccCCCHHHHHH
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY---AGR--PIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQ 77 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY---aGR--~I~aEfsPVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~ 77 (216)
.|+.||+|.++++|++|+++|||.-+ .|+ +|.+.|+.-.. |..+....-+-| =+++.--++.+-...
T Consensus 56 kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~~~-----~~~~~~~~lp~G---l~~~p~fis~~Ee~~ 127 (345)
T 3tht_A 56 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ-----WKELRPQALPPG---LMVVEEIISSEEEKM 127 (345)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSSEE-----EEEEECCSCCTT---EEEETTCSCHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeeccc-----ccccccccCCCc---eEEEcCcCCHHHHHH
Confidence 58999999999999999999999988 355 78888873111 333333455665 445555578888888
Q ss_pred HHhh
Q 027939 78 LFGR 81 (216)
Q Consensus 78 Lf~~ 81 (216)
|...
T Consensus 128 Ll~~ 131 (345)
T 3tht_A 128 LLES 131 (345)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8876
No 182
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.0084 Score=46.03 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=30.4
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
-.||.|.+.++|.+|++ |||--++||+|.+.+
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 47999999999999999 999999999999987
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.019 Score=46.65 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.2
Q ss_pred cceEEEEeCC----HHH----HHHHHH--HhcCcccCCeeeEEEecc
Q 027939 3 VGNVYVQFRE----EEQ----AARALK--SLSGRFYAGRPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~----ee~----A~~Av~--~LNGRwYaGR~I~aEfsP 39 (216)
.|+.||+|.+ +++ |.+|+. .|||--++|++|.|+|-+
T Consensus 48 lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 48 LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 6999999996 333 889989 899999999999999865
No 184
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.31 E-value=0.016 Score=41.59 Aligned_cols=31 Identities=19% Similarity=0.657 Sum_probs=26.4
Q ss_pred CCCcccceecccccCcCCCCCCCCcccccCC
Q 027939 40 VTDFREATCRQYEENTCNRGGYCNFMHLKRI 70 (216)
Q Consensus 40 VtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~ 70 (216)
....+..+|+-|..|.|.+|..|.|+|-..+
T Consensus 5 ~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 5 SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 4566788999999999999999999997654
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.15 E-value=0.034 Score=47.86 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY 28 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY 28 (216)
.|++||.|.++++|+.|+.+|+|..+
T Consensus 179 kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 179 KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 59999999999999999999999877
No 186
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.02 E-value=0.031 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.711 Sum_probs=27.7
Q ss_pred ccCCCcccceeccc-ccCcCCCCCCCCcccccC
Q 027939 38 SPVTDFREATCRQY-EENTCNRGGYCNFMHLKR 69 (216)
Q Consensus 38 sPVtdF~eA~Crq~-~~g~C~RGg~CNFmHvk~ 69 (216)
.|...|+..+|+.| ..|.|..|..|.|.|...
T Consensus 5 ~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 5 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLG 37 (77)
T ss_dssp CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred CCCCCccchhCHHhhhCCCcCCCCCccCCCCCh
Confidence 35578999999999 489999999999999764
No 187
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.26 E-value=0.16 Score=38.43 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=22.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhcCc
Q 027939 2 QVGNVYVQFREEEQAARALKSLSGR 26 (216)
Q Consensus 2 L~GNVYVkF~~ee~A~~Av~~LNGR 26 (216)
+.|..||+|.+.++|++|++.|++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 5799999999999999999999864
No 188
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=93.24 E-value=0.02 Score=40.55 Aligned_cols=25 Identities=44% Similarity=0.999 Sum_probs=21.1
Q ss_pred ccceecccccCcCCCCC-CCCccccc
Q 027939 44 REATCRQYEENTCNRGG-YCNFMHLK 68 (216)
Q Consensus 44 ~eA~Crq~~~g~C~RGg-~CNFmHvk 68 (216)
+.++|+.|..|.|.+|. .|.|.|..
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCc
Confidence 34689999999999998 59999964
No 189
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.23 E-value=0.091 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCccc--CCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFY--AGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwY--aGR~I~aEfs 38 (216)
.|..||.|.++++|+ .|+|..+ .|++|.+.+.
T Consensus 48 rGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 48 RAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEEC
T ss_pred CCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEc
Confidence 599999999999998 3566655 4999988875
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.62 E-value=0.042 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=25.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcc--cCCeeeEEEec
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRF--YAGRPIIVDFS 38 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRw--YaGR~I~aEfs 38 (216)
.|..||.|.++++|++| ++.- +.|++|.+.+.
T Consensus 42 ~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 42 RAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNA 75 (88)
T ss_dssp CSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECC
T ss_pred CCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEec
Confidence 58999999999999754 4443 48999998885
No 191
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.14 Score=40.92 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEe
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 37 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEf 37 (216)
|=+.|.|.++..|.+|.-+|+|--|+||.|.|--
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4578999999999999999999999999998753
No 192
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.37 E-value=0.057 Score=40.92 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=27.8
Q ss_pred CCcccceecccccCcCCCCCCCCcccccCCCHHHHHHHH
Q 027939 41 TDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 79 (216)
Q Consensus 41 tdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~Lf 79 (216)
.+-+..+|..|..|.|.++ .|-|+|+ +..|+..|-
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~---~~~l~~~~~ 86 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHP---PAHLQAKIK 86 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCC---CHHHHHHHH
T ss_pred cCCccccchhhccCCCCCC-CcCccCC---hHHHHHHHH
Confidence 4577889999999999999 9999996 446666543
No 193
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.26 E-value=0.051 Score=40.20 Aligned_cols=27 Identities=30% Similarity=0.802 Sum_probs=21.6
Q ss_pred cccceecccccCcCCCCC-CCCcccccC
Q 027939 43 FREATCRQYEENTCNRGG-YCNFMHLKR 69 (216)
Q Consensus 43 F~eA~Crq~~~g~C~RGg-~CNFmHvk~ 69 (216)
.+.++|+.|..|.|.+|. .|.|.|...
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 456789999889999985 899998854
No 194
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=92.05 E-value=0.043 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=23.0
Q ss_pred CCCcccceecccccCcCCCCCCCCcccccCC
Q 027939 40 VTDFREATCRQYEENTCNRGGYCNFMHLKRI 70 (216)
Q Consensus 40 VtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~ 70 (216)
....+..+|+-|..|.|.+|..|.|.|-..+
T Consensus 11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred CCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 3456677888888888888888888887543
No 195
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=91.81 E-value=0.041 Score=38.86 Aligned_cols=28 Identities=25% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCCcccceecccccCcCCCCCCCCccccc
Q 027939 40 VTDFREATCRQYEENTCNRGGYCNFMHLK 68 (216)
Q Consensus 40 VtdF~eA~Crq~~~g~C~RGg~CNFmHvk 68 (216)
+..-+..+|..|..|.|.+| .|-|+|+.
T Consensus 37 ~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 37 TNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred ccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 34567899999999999999 99999963
No 196
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=91.21 E-value=0.066 Score=40.21 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=20.4
Q ss_pred ccceecccccCcCCCCC-CCCcccccC
Q 027939 44 REATCRQYEENTCNRGG-YCNFMHLKR 69 (216)
Q Consensus 44 ~eA~Crq~~~g~C~RGg-~CNFmHvk~ 69 (216)
+.++|+.|..|.|.||. .|.|.|...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 36788888888888886 888888754
No 197
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=91.08 E-value=0.12 Score=38.90 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=16.6
Q ss_pred cceeccc-ccCcCCCCCCCCcccccC
Q 027939 45 EATCRQY-EENTCNRGGYCNFMHLKR 69 (216)
Q Consensus 45 eA~Crq~-~~g~C~RGg~CNFmHvk~ 69 (216)
..+|..| ..|.|..|..|.|+|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 4567766 367777777777777643
No 198
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=91.07 E-value=0.055 Score=38.67 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=36.1
Q ss_pred HHhcCcccCCeeeEEEec-cCCCcccceeccccc-CcCCCCCCCCcccccCCC
Q 027939 21 KSLSGRFYAGRPIIVDFS-PVTDFREATCRQYEE-NTCNRGGYCNFMHLKRIS 71 (216)
Q Consensus 21 ~~LNGRwYaGR~I~aEfs-PVtdF~eA~Crq~~~-g~C~RGg~CNFmHvk~~s 71 (216)
--|.|.--.|.. |.|+ ++..-+..+|.-|.. |.|.. ..|.|+|+.+..
T Consensus 21 ~fl~G~C~~G~~--C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 21 HWLRGLCKKGDQ--CEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp HHHTTCCCCGGG--SSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred HHhcCCCCCCCC--CCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 345566666654 7787 444456789999999 99999 999999998765
No 199
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.01 E-value=0.071 Score=38.94 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=26.7
Q ss_pred cCCCcccceecccccCcCCCCCCCCcccccCCCHHHHH
Q 027939 39 PVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRR 76 (216)
Q Consensus 39 PVtdF~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~ 76 (216)
|...| .+|..|..|.|+.|..|.|-|=. .+|+.
T Consensus 16 P~~k~--~LC~~~~~G~C~~G~~C~FAHG~---~ELr~ 48 (69)
T 2d9m_A 16 PTGYF--SICDRYMNGTCPEGNSCKFAHGN---AELHE 48 (69)
T ss_dssp CCSCC--SBCHHHHHSCCSSCSSCSSBSSH---HHHHH
T ss_pred CCCCc--ccCcccCcCCCCCCCccCCcCCH---HHHhh
Confidence 44455 89999999999999999999954 56655
No 200
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.85 E-value=0.12 Score=36.99 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=33.9
Q ss_pred HHhcCcccCCeeeEEEecc-CCCcccceeccccc-CcCCCCCCCCcccccCC
Q 027939 21 KSLSGRFYAGRPIIVDFSP-VTDFREATCRQYEE-NTCNRGGYCNFMHLKRI 70 (216)
Q Consensus 21 ~~LNGRwYaGR~I~aEfsP-VtdF~eA~Crq~~~-g~C~RGg~CNFmHvk~~ 70 (216)
--|.|.--.|. .|.|+. +..-+..+|.-|.. |.|. |..|-|+|+.+.
T Consensus 15 ~fl~G~C~~G~--~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 15 HWLRGLCKKGD--QCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp HHHTTCCSCTT--SSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred hHccCcCCCCC--CCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 34455555554 577763 23345678999998 9999 899999999864
No 201
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.84 E-value=0.041 Score=41.68 Aligned_cols=27 Identities=30% Similarity=0.791 Sum_probs=23.8
Q ss_pred ccceecccccCcCCCCC-CCCcccccCC
Q 027939 44 REATCRQYEENTCNRGG-YCNFMHLKRI 70 (216)
Q Consensus 44 ~eA~Crq~~~g~C~RGg-~CNFmHvk~~ 70 (216)
+.++|+.|..|.|.+|. .|.|.|....
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 45789999999999998 8999998753
No 202
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=87.86 E-value=0.23 Score=36.58 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=26.7
Q ss_pred cccceecccccCcCCCCCCCCcccccCCCHHHHHHHH
Q 027939 43 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 79 (216)
Q Consensus 43 F~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~Lf 79 (216)
=...+|..|..|.|.++ .|-|+|+ |..|...|-
T Consensus 41 ~~~~vC~dflkG~C~r~-~C~y~H~---~~~l~~~~~ 73 (83)
T 3d2n_A 41 GRVIACFDSLKGRCSRE-NCKYLHP---PPHLKTQLE 73 (83)
T ss_dssp TEEECCHHHHTTCCCCS-SCSSCCC---CHHHHHHHH
T ss_pred CceeehhHhhhccccCC-CcceeCC---hHHHHHHHh
Confidence 34689999999999999 8999996 556666553
No 203
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=87.61 E-value=0.13 Score=44.26 Aligned_cols=30 Identities=20% Similarity=0.538 Sum_probs=26.8
Q ss_pred eecccccCcCCCCCCCCcccccCCCHHHHH
Q 027939 47 TCRQYEENTCNRGGYCNFMHLKRISRDLRR 76 (216)
Q Consensus 47 ~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~ 76 (216)
+|--|..|.|.+|..|.|+|-++.+.++..
T Consensus 72 ~C~ffakG~C~~G~~C~y~H~lPt~~d~~~ 101 (240)
T 3u1l_A 72 FCLFFAKGMCCLGPKCEYLHHIPDEEDIGK 101 (240)
T ss_dssp BCHHHHTTCCSCGGGCSSBBSCCCHHHHHH
T ss_pred EcCccccCCCCCCCCCCccCCCCCccchhh
Confidence 899999999999999999999888777653
No 204
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=87.21 E-value=0.12 Score=36.16 Aligned_cols=27 Identities=22% Similarity=0.830 Sum_probs=0.0
Q ss_pred Ccccceecccc-cCcCCCCCCCCccccc
Q 027939 42 DFREATCRQYE-ENTCNRGGYCNFMHLK 68 (216)
Q Consensus 42 dF~eA~Crq~~-~g~C~RGg~CNFmHvk 68 (216)
.+...+|..|. .|.|+.|..|.|+|..
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~ 74 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNP 74 (77)
T ss_dssp ----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCC
Confidence 45577899775 7999999999999975
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.53 E-value=0.8 Score=35.75 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=28.9
Q ss_pred eEEEEeCC-HHHHHHHHHHhc--CcccCCeeeEEEec
Q 027939 5 NVYVQFRE-EEQAARALKSLS--GRFYAGRPIIVDFS 38 (216)
Q Consensus 5 NVYVkF~~-ee~A~~Av~~LN--GRwYaGR~I~aEfs 38 (216)
..||.|.+ +++|+.|+..|| |--+.|..|++++.
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 46999999 899999999994 77788888887764
No 206
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=86.40 E-value=0.5 Score=35.51 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=23.9
Q ss_pred CcccceecccccCcCCCCCCCCcccc
Q 027939 42 DFREATCRQYEENTCNRGGYCNFMHL 67 (216)
Q Consensus 42 dF~eA~Crq~~~g~C~RGg~CNFmHv 67 (216)
..+..+|+-|..|.|.+|..|.|+|.
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC
Confidence 36788999999999999999999998
No 207
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=83.57 E-value=0.54 Score=35.21 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=27.7
Q ss_pred cccceecccccCcCCCCCCCCcccccCCCHHHHHHHH
Q 027939 43 FREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLF 79 (216)
Q Consensus 43 F~eA~Crq~~~g~C~RGg~CNFmHvk~~sr~L~~~Lf 79 (216)
=+..+|..|..|.|.++ .|-|+|+ +..|..+|.
T Consensus 49 ~~~~vC~dflkG~C~r~-~Cky~H~---~~hl~~~~~ 81 (89)
T 2rpp_A 49 GRVIACFDSLKGRCSRE-NCKYLHP---PTHLKTQLE 81 (89)
T ss_dssp TBEEBCHHHHHTCCCCT-TCCSBCC---CHHHHHHHH
T ss_pred CceeeehhhhhCcCCCC-CcceecC---HHHHHHHHH
Confidence 36789999999999998 8999996 557777664
No 208
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.28 E-value=0.95 Score=35.09 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=34.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCCC
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 42 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVtd 42 (216)
-|-|-|.++++|.+|-..|++-=|.|+.|.|-|-..++
T Consensus 48 Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 47799999999999999999999999999999976443
No 209
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=82.60 E-value=0.39 Score=33.24 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=24.8
Q ss_pred cccceecccc-cCcCCCCCCCCcccccCCC
Q 027939 43 FREATCRQYE-ENTCNRGGYCNFMHLKRIS 71 (216)
Q Consensus 43 F~eA~Crq~~-~g~C~RGg~CNFmHvk~~s 71 (216)
-..++|.+|. -|-|+.|..|+|+|=.-+|
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCC
Confidence 4689999995 5899999999999977665
No 210
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=75.09 E-value=1.7 Score=34.25 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=27.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEeccCC
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 41 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfsPVt 41 (216)
-|+|+|.+..+|++||.. ||..++|-.| +-..|++
T Consensus 61 WihI~Y~s~~~A~rAL~k-NG~ii~g~~m-IGV~p~~ 95 (119)
T 1wwh_A 61 WMHIRYQSKLQARKALSK-DGRIFGESIM-IGVKPCI 95 (119)
T ss_dssp EEEEEESSHHHHHHHHTT-TTCEETTTEE-CEEEECC
T ss_pred eEEEEeCCHHHHHHHHHh-CCeEecCCEE-EEEEECC
Confidence 589999999999999987 9999986443 2334433
No 211
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=74.85 E-value=2.7 Score=33.80 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=28.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.-|.|+|.+..+|.+|++. ||.=|+|-.|=|...
T Consensus 63 NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 63 SWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPY 96 (132)
T ss_dssp TEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEEC
T ss_pred cEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEEC
Confidence 3589999999999999987 999999987766553
No 212
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=67.81 E-value=2.2 Score=36.08 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=39.1
Q ss_pred EEeCCHH---HHHHHHHHhcCcccCCeeeEEEeccCCCcccceec--ccccCcCCCCCCCCcccccCC
Q 027939 8 VQFREEE---QAARALKSLSGRFYAGRPIIVDFSPVTDFREATCR--QYEENTCNRGGYCNFMHLKRI 70 (216)
Q Consensus 8 VkF~~ee---~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Cr--q~~~g~C~RGg~CNFmHvk~~ 70 (216)
|-|.+++ .|+++++.|+..| +++|..|+.|++.|-.|-=- +|- .+-+ +++|.=+|..+.
T Consensus 123 Ify~~~~Q~~~A~~~~~~l~~~~--~~~IvTeI~p~~~Fy~AE~yHQ~Yl-~knP-~~Yccp~h~~r~ 186 (187)
T 3pim_A 123 LFAHSDADLKELAKIKEEWQPKW--GNKIATVIEPIKNFYDAEEYHQLYL-DKNP-QGYACPTHYLRE 186 (187)
T ss_dssp EEESSHHHHHHHHHHHHHHGGGG--TTCBCCEEEEEEEEEEHHHHHHHHC-TTCT-TCTTCCSCCCCC
T ss_pred eEeCCHHHHHHHHHHHHHHHHHh--CCCcEEEEeeCCCeeecHHHHHHHH-HHCC-CCCCCCcccccC
Confidence 3455654 4666778888887 78999999999888766311 121 2333 578887776653
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=38.39 E-value=39 Score=24.97 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=28.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCC-----eeeEEEecc
Q 027939 3 VGNVYVQFREEEQAARALKSLSGRFYAG-----RPIIVDFSP 39 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~LNGRwYaG-----R~I~aEfsP 39 (216)
-.-+||.|.+.+++..-.+.++|.-|-- -+-.+||.|
T Consensus 45 ~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 45 YARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp CEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 3568999999999999999999987732 233466666
No 214
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=37.66 E-value=21 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHHhcCcc
Q 027939 1 MQVGNVYVQFREEEQAARALKSLSGRF 27 (216)
Q Consensus 1 HL~GNVYVkF~~ee~A~~Av~~LNGRw 27 (216)
||.|.|||+=..+.+...|++.|..=+
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 689999999999999999998876543
No 215
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=37.23 E-value=13 Score=24.78 Aligned_cols=14 Identities=50% Similarity=0.911 Sum_probs=11.6
Q ss_pred cCCCCCCCCccccc
Q 027939 55 TCNRGGYCNFMHLK 68 (216)
Q Consensus 55 ~C~RGg~CNFmHvk 68 (216)
.|++|..|||.-++
T Consensus 26 ~C~rg~~Cn~fllk 39 (41)
T 1hy9_A 26 DCPRGTSCNSFLLK 39 (41)
T ss_dssp BCCTTCCBCTTTCS
T ss_pred CCCCCCcchhhhee
Confidence 59999999997554
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=31.21 E-value=49 Score=25.06 Aligned_cols=36 Identities=22% Similarity=0.588 Sum_probs=27.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCe-----eeEEEecc
Q 027939 4 GNVYVQFREEEQAARALKSLSGRFYAGR-----PIIVDFSP 39 (216)
Q Consensus 4 GNVYVkF~~ee~A~~Av~~LNGRwYaGR-----~I~aEfsP 39 (216)
.-+||.|.+.++...-.+.++|--|--. +.++||.|
T Consensus 54 SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 54 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 4579999999999999999998877322 44466666
No 217
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=29.09 E-value=32 Score=29.03 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=31.9
Q ss_pred EEeCCHHH---HHHHHHHhcCcccCCeeeEEEeccCCCccccee-cc-cccCcCCCCCCCCc
Q 027939 8 VQFREEEQ---AARALKSLSGRFYAGRPIIVDFSPVTDFREATC-RQ-YEENTCNRGGYCNF 64 (216)
Q Consensus 8 VkF~~ee~---A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~C-rq-~~~g~C~RGg~CNF 64 (216)
|-|.++++ |++++..|... | +++|..|+.|++.|-.|-= .| |- .+-+ .++|.+
T Consensus 98 If~~~~~Q~~~A~~~~~~~~~~-~-~~~IvTeI~p~~~Fy~AE~yHQ~Yl-~knp-~~Yc~~ 155 (193)
T 3bqh_A 98 VYYTDPAEKAVIAAALKREQQK-Y-QLPLVVENEPLKNFYDAEEYHQDYL-IKNP-NGYCHI 155 (193)
T ss_dssp EEESSHHHHHHHHHHHHHHHTT-C-SSCBCCEEEECCCEEECCGGGTTHH-HHCT-TCCC--
T ss_pred eecCCHHHHHHHHHHHHHHHHH-h-CCCeEEEEecCCCeeEcHHHHHHHH-HhCC-CCceee
Confidence 34555554 56667778776 4 4799999999999866632 12 21 2234 458854
No 218
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=25.45 E-value=48 Score=22.18 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=17.5
Q ss_pred cceEEEEeCCHHHHHHHHHH
Q 027939 3 VGNVYVQFREEEQAARALKS 22 (216)
Q Consensus 3 ~GNVYVkF~~ee~A~~Av~~ 22 (216)
.|.+|=+|.+.++|++.|..
T Consensus 31 ~ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 31 PAARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp TTCEEEEESSHHHHHHHHHC
T ss_pred CCCccCCCCCHHHHHHHHHh
Confidence 47899999999999988864
No 219
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=22.30 E-value=40 Score=27.82 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=32.5
Q ss_pred EEeCCHHH---HHHHHHHhcCcccCCeeeEEEeccCCCcccceeccccc---CcCCCCCCCC
Q 027939 8 VQFREEEQ---AARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEE---NTCNRGGYCN 63 (216)
Q Consensus 8 VkF~~ee~---A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~Crq~~~---g~C~RGg~CN 63 (216)
|-|.++++ |++++..|+....-..+|..|+.|++.|-.|- .|.. .+-|-|-+|-
T Consensus 94 If~~~~~Q~~~a~~~~~~l~~~~~~~~~IvTei~p~~~Fy~AE--~yHQ~Yl~knP~~y~Ch 153 (168)
T 4gwb_A 94 IYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAE--PEHQNYLERYPNGYTCH 153 (168)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTCSSSCCCCEEEECCCEEECC--GGGTTHHHHSTTSCCCC
T ss_pred EecCCHHHHHHHHHHHHHHHHcccCCCCEEEEEEecCCeeECH--HHHHHHHHhCCCCCccC
Confidence 44566655 44455666555444568889999999997762 2211 2455555673
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.16 E-value=63 Score=21.75 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=22.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCeeeEEEec
Q 027939 5 NVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 38 (216)
Q Consensus 5 NVYVkF~~ee~A~~Av~~LNGRwYaGR~I~aEfs 38 (216)
.-||.-... .|..+++.|++-+..|++|.++..
T Consensus 42 ~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 345555544 488999999999999999988763
No 221
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=21.24 E-value=25 Score=31.86 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCcccCCeeeEEEeccCCCcccce
Q 027939 14 EQAARALKSLSGRFYAGRPIIVDFSPVTDFREAT 47 (216)
Q Consensus 14 e~A~~Av~~LNGRwYaGR~I~aEfsPVtdF~eA~ 47 (216)
+.|++++..|...| +++|..|+.|++.|-.|-
T Consensus 105 ~~a~~~~~~~~~~~--~~~IvTeI~p~~~Fy~AE 136 (313)
T 3e0m_A 105 PAIYTVVQEQERML--GRKIAVEVEQLRHYILAE 136 (313)
T ss_dssp HHHHHHHHHHHHHH--SSCCCCEEEECCCEEECC
T ss_pred HHHHHHHHHHHHhc--CCCeEEEEeeccceeEcH
Confidence 45777788888765 689999999999987663
Done!