BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027941
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK--EW- 58
G L +++SCA +++R+V TSS G + + E + V DE+ +S+ C+ K W
Sbjct: 106 GMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWM 162
Query: 59 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SF 115
Y ++KTLAE+AAWK+AKEN ID + I P V+GPF + L+ I G++ S
Sbjct: 163 YFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSI 222
Query: 116 AFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP--TLLRSGKL 173
FV + D+ AHI E PKA GRY+ + D+ K LRE YP + K
Sbjct: 223 IRQGQFVHLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKG 282
Query: 174 EEKYQPTIKVSQERAKSLGINFT-PWEVGVRGCIESLMEKGFL 215
++ ++ S ++ LG F E G +++ KG L
Sbjct: 283 VDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 12/176 (6%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-Y 59
G +NV+++C + S+KRV+LTSS A+ +N+ T VV ++ W L W Y
Sbjct: 109 GVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGY 168
Query: 60 SLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQP----------ILNFGAEVILNLI 109
+KTLAE+AAWKFA+EN IDL+ + P + G L G E ++N +
Sbjct: 169 PASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGM 228
Query: 110 NGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 165
G Q + + DV AHI E ASGRY+ + ++ KFL + YP
Sbjct: 229 KGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYP 284
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW--- 58
G L +L++C ++KR + TSS A+ N V+DE+ +S+ L + K +
Sbjct: 103 GALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKD---VLDESDWSDVDLLRSVKPFGWN 159
Query: 59 YSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLING--DQSFA 116
Y+++KTLAE+A +F ++NGID+V + ++G F P L E L L+ G +Q
Sbjct: 160 YAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGV 219
Query: 117 FPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP--TLLRSGKLE 174
+ V + DV AHI LE GRY + + ++ + L YP +L +L+
Sbjct: 220 TRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELK 279
Query: 175 E-KYQPTIKVSQERAKSLGINFT-PWEVGVRGCIESLMEKGFL 215
E K ++ ++ G +F E I+ EKG+L
Sbjct: 280 EIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE-TWF--------SNPVLC 52
GTLN LR+ A S+KR VLTSS + L+ + P + +DE +W + P
Sbjct: 110 GTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLPESD 168
Query: 53 KENKEW-YSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFGAEV--ILN 107
+ W Y+ +KT AE AAWKF EN L A+ P IG F P G+ +++
Sbjct: 169 PQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMS 228
Query: 108 LINGDQSFAF----PYIFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFLR 161
L NG+ S A P +V D+ H+ L +P+ R Y AG+ ++ +L R
Sbjct: 229 LFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATFR 287
Query: 162 EHYPTLLRSGKLEEKYQPTIKV----SQERAKSLG 192
+ YP+ ++ Q K S E KSLG
Sbjct: 288 KLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLG 322
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDE-TWF--------SNPVLC 52
GTLN LR+ A S+KR VLTSS + L+ + P + +DE +W + P
Sbjct: 110 GTLNALRAAAATPSVKRFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLPESD 168
Query: 53 KENKEW-YSLAKTLAEEAAWKFAKENG--IDLVAIHPGTVIGPFFQPILN--FGAEVILN 107
+ W Y+ +KT AE AAWKF EN L A+ P IG F P + +
Sbjct: 169 PQKSLWVYAASKTEAELAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXS 228
Query: 108 LINGDQSFAF----PYIFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFLR 161
L NG+ S A P +V D+ H+ L +P+ R Y AG+ ++ +L R
Sbjct: 229 LFNGEVSPALALXPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATFR 287
Query: 162 EHYPTLLRSGKLEEKYQPTIKV----SQERAKSLG 192
+ YP+ ++ Q K S E KSLG
Sbjct: 288 KLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLG 322
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTAEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 162
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 163 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 222
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 223 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 162
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 163 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 222
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 223 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 162
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 163 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 222
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 223 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 98 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 149
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 209
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 210 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 237
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 162
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 163 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 222
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 223 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 111 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 162
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 163 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 222
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 223 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 250
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 3 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 60
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 413 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 464
Query: 61 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 105
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 465 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 524
Query: 106 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 136
+ LI+G + F +IRD + A R +E
Sbjct: 525 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 552
>pdb|2BHM|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 164
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 30 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 63
L+E ++ D V+D+ W S V+ +E +WY+L K
Sbjct: 16 LDEKSVSYDTVMDKYWLSQYVIARETYDWYTLQK 49
>pdb|4AKY|A Chain A, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|B Chain B, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|C Chain C, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|D Chain D, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|E Chain E, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKZ|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 138
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 38 DVVIDETWFSNPVLCKENKEWYSLAK 63
D V+D+ W S V+ +E +WY+L K
Sbjct: 3 DTVMDKYWLSQYVIARETYDWYTLQK 28
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 61
GT N+L AK H +++VV+ S+IG P TP + + P + Y +
Sbjct: 91 GTYNILE-AAKQHRVEKVVIPSTIGVF----GPETPKNKVPSITITRP------RTMYGV 139
Query: 62 AKTLAEEAAWKFAKENGIDLVAI-HPGTV 89
K AE + ++ G+D+ ++ +PG +
Sbjct: 140 TKIAAELLGQYYYEKFGLDVRSLRYPGII 168
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 2 GTLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSL 61
GT N+L AK H +++VV+ S+IG P TP + + P + + +
Sbjct: 91 GTYNILE-AAKQHRVEKVVIPSTIGVF----GPETPKNKVPSITITRP------RTMFGV 139
Query: 62 AKTLAEEAAWKFAKENGIDLVAI-HPGTV 89
K AE + ++ G+D+ ++ +PG +
Sbjct: 140 TKIAAELLGQYYYEKFGLDVRSLRYPGII 168
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 121 FVEIRDVVYAHIRALEVPKASGRYLLAGSVAQ-HSDILKFLREH 163
FV I DV+ A+++A++ K SG Y + S A+ +++I+ L+EH
Sbjct: 229 FVYIEDVIQANVKAMKAQK-SGVYNVGYSQARSYNEIVSILKEH 271
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 42 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG 101
D +WF +P +L LA +AA V G+ + FQ I N G
Sbjct: 796 DVSWFDDP-----KNTTGALTTRLANDAAQ----------VKGATGSRLAVIFQNIANLG 840
Query: 102 AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYL-----LAGSVAQHSDI 156
+I++LI G Q + + I ++ A +E+ SG+ L L GS ++
Sbjct: 841 TGIIISLIYGWQ---LTLLLLAIVPII-AIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 157 LKFLREHYPTLLRSGKLEEKYQPTIKV----SQERAKSLGINFT 196
++ R +L R K E Y ++++ + ++A GI F+
Sbjct: 897 IENFRT-VVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFS 939
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 42 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG 101
D +WF +P +L LA +AA V G+ + FQ I N G
Sbjct: 796 DVSWFDDP-----KNTTGALTTRLANDAAQ----------VKGATGSRLAVIFQNIANLG 840
Query: 102 AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYL-----LAGSVAQHSDI 156
+I++LI G Q + + I ++ A +E+ SG+ L L GS ++
Sbjct: 841 TGIIISLIYGWQ---LTLLLLAIVPII-AIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 157 LKFLREHYPTLLRSGKLEEKYQPTIKV----SQERAKSLGINFT 196
++ R +L R K E Y ++++ + ++A GI F+
Sbjct: 897 IENFRT-VVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFS 939
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAKSLGIN 194
R L A+H D+L T +R LE+ Q I + QE+A++LG++
Sbjct: 699 RNQLLAEAAKHPDML--------TSVRPNGLEDTPQFKIDIDQEKAQALGVS 742
>pdb|3LX1|A Chain A, Crystal Structure Analysis Of Pcna1 From Thermococcus
Kodakaraensis Tk0535
Length = 255
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 52 CKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVI 90
KE + + A L +EAA+KF +E GI + A+ P V+
Sbjct: 10 AKEFADLIATASNLIDEAAFKFTEE-GISMRAMDPSRVV 47
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 156 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQER 187
++ F+ ++P+LL+ G LEE P +K S+ +
Sbjct: 151 LINFIHHNWPSLLKHGFLEEFITPIVKASKNK 182
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 55 NKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG---AEVILNLING 111
K Y L K +E A + A+ NG+ +V PG V+G L+ G VI + NG
Sbjct: 151 GKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGMVLGE-----LDIGPTTGRVITAIGNG 204
Query: 112 DQSF--AFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSVAQHSDILKFLRE 162
+ + A ++ + + ALE + RYLL G + +D+ + + E
Sbjct: 205 EMTHYVAGQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRIAE 257
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 156 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAK 189
++ F+ ++P+LLR LEE P +KVS+ + +
Sbjct: 123 LINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQE 156
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 55 NKEWYSLAKTLAE---EAAWKFAKENGID--LVAIHPGTVIGPFFQPILNFGAEVILNLI 109
+E Y + KTL + E F ++ +D L G +GP PI E+ NLI
Sbjct: 52 TREMYEIGKTLRQLTREYDALFFVDDRVDVALAVDADGVQLGPEDMPI-EVAKEIAPNLI 110
Query: 110 NGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYLLAGSV 150
G VY+ ALE K YL AGSV
Sbjct: 111 IGAS--------------VYSLEEALEAEKKGADYLGAGSV 137
>pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
Length = 464
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 97 ILNFGAEVILNLINGDQSFAFPYIFVEIRD-----VVYAHI 132
+L+ GA VI+ + G S A ++F+ +RD V+ AH+
Sbjct: 14 LLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHV 54
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 137 VPKASG--RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPT---IKVSQERAKSL 191
+ KA G Y+++ S + D +K +HY L G EKY T I V +
Sbjct: 198 ISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI 257
Query: 192 GINFTPWEVGVRGCIESL 209
N P + V G I S+
Sbjct: 258 DFNIMPKAMKVGGRIVSI 275
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 43 ETWFSN------PVLCKENKE--WY------SLAKTLAEEAAWKFAKEN-GIDLVAIHPG 87
ET F+N P L KEN + W +L T ++ A K G D++ +
Sbjct: 120 ETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 88 TVIGPFFQPILNFGAEVILN----LING 111
T + P+ LNFGA+++++ ING
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYING 207
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 143 RYLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKYQPTIKVSQE 186
RYL+ S I +FL+EH ++ KL EK++ T K++QE
Sbjct: 337 RYLI-------SKIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQE 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,427,884
Number of Sequences: 62578
Number of extensions: 261311
Number of successful extensions: 640
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 42
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)