Query 027942
Match_columns 216
No_of_seqs 136 out of 205
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 03:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 1.1E-44 2.4E-49 323.9 10.3 117 66-186 126-248 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 2.3E-38 5E-43 230.1 5.9 62 119-180 1-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 6.4E-36 1.4E-40 214.9 4.5 57 121-177 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 3.2E-21 6.9E-26 168.9 3.3 66 120-187 157-222 (248)
5 PF06203 CCT: CCT motif; Inte 81.8 2.3 4.9E-05 29.7 3.5 27 155-182 19-45 (45)
6 KOG1561 CCAAT-binding factor, 67.3 1.4 3.1E-05 40.7 -0.6 47 134-185 14-60 (307)
7 PF15046 DUF4532: Protein of u 38.9 35 0.00076 31.8 3.4 50 119-179 130-196 (279)
8 COG4172 ABC-type uncharacteriz 25.2 36 0.00078 34.1 1.2 59 119-177 385-447 (534)
9 COG0133 TrpB Tryptophan syntha 23.1 85 0.0018 30.6 3.2 23 129-151 202-224 (396)
10 COG0777 AccD Acetyl-CoA carbox 16.4 42 0.00092 31.5 -0.3 72 74-148 195-278 (294)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=1.1e-44 Score=323.93 Aligned_cols=117 Identities=49% Similarity=0.811 Sum_probs=102.1
Q ss_pred cCcccccc-CCCCCCCCcccccc---cCCCCCCCCCCCCCCCccccccc-CCCCCCCCCCC-CceeechhhhHHHHHHHH
Q 027942 66 AGHAMAPA-AYPYPDPYYRSIFA---PYDAQPYPPQPYGGQPMLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILRRRQ 139 (216)
Q Consensus 66 ~ghs~a~~-~yPy~Dpyygg~~a---aYg~q~~~~~p~~~~p~l~Gm~~-~r~plp~~~~e-ePvyVNaKQY~rIlRRRq 139 (216)
..|..+++ .+||.+|||+|++. +|++|+.. ...+++.||.+ .|+|||.++.| |||||||||||||||||+
T Consensus 126 ~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~----~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq 201 (307)
T KOG1561|consen 126 SMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTN----TASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQ 201 (307)
T ss_pred ccccccccccCCCCCCcccceecccccccCCCCc----cccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHH
Confidence 34444444 48999999999999 55555331 34668899999 99999999877 999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCcccccccchhh
Q 027942 140 SRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQ 186 (216)
Q Consensus 140 ~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~~~~~ 186 (216)
+|||||+++||+|.||||||||||+|||||+||+||||||+||.+.+
T Consensus 202 ~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ 248 (307)
T KOG1561|consen 202 ARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDD 248 (307)
T ss_pred HHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999997655
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=2.3e-38 Score=230.06 Aligned_cols=62 Identities=76% Similarity=1.183 Sum_probs=60.1
Q ss_pred CCCCceeechhhhHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCccccc
Q 027942 119 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNS 180 (216)
Q Consensus 119 ~~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~ 180 (216)
++|+|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+||||||+
T Consensus 1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~ 62 (62)
T smart00521 1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62 (62)
T ss_pred CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=6.4e-36 Score=214.94 Aligned_cols=57 Identities=75% Similarity=1.184 Sum_probs=56.2
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHhhhhh-hccCCCcchhhhhHHHhhccCCCCCcc
Q 027942 121 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF 177 (216)
Q Consensus 121 eePvyVNaKQY~rIlRRRq~RaklE~~~kl-~k~rkpYLHESRH~HAm~R~Rg~gGRF 177 (216)
|+|||||||||++|||||++|||||+++|+ ++.||||||||||+|||+|+||+||||
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence 689999999999999999999999999999 999999999999999999999999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.82 E-value=3.2e-21 Score=168.89 Aligned_cols=66 Identities=39% Similarity=0.508 Sum_probs=60.4
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCcccccccchhhh
Q 027942 120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQ 187 (216)
Q Consensus 120 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~~~~~~ 187 (216)
..+|.|||+|||++|++||-+|++||.. |.-.|..|||||||+|||+|+|+++||||++.+.+..+
T Consensus 157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln 222 (248)
T COG5224 157 SFQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLN 222 (248)
T ss_pred ccCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhh
Confidence 4689999999999999999999999986 55667779999999999999999999999999998764
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=81.81 E-value=2.3 Score=29.69 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCcchhhhhHHHhhccCCCCCccccccc
Q 027942 155 KPYLHESRHLHALRRARGCGGRFLNSKK 182 (216)
Q Consensus 155 kpYLHESRH~HAm~R~Rg~gGRFL~~k~ 182 (216)
|.-.+++|..=|..|+|-. |||+..++
T Consensus 19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 19 KKIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred ccCCcchHHHHHhhCCccC-CcccCCCC
Confidence 5677899999999999965 99987653
No 6
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=67.29 E-value=1.4 Score=40.71 Aligned_cols=47 Identities=49% Similarity=0.841 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCcchhhhhHHHhhccCCCCCcccccccchh
Q 027942 134 ILRRRQSRAKAESENKVLKSRKPYLHESRHLHALRRARGCGGRFLNSKKNEN 185 (216)
Q Consensus 134 IlRRRq~RaklE~~~kl~k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~~~~ 185 (216)
+++++..+++.+.. -.....+|+++|+.+.|.+ +.+++|++..+.+.
T Consensus 14 ~~~~~~~~q~~~~~-~~~~~~~p~~~~s~~~~q~----~~s~~~~s~~g~~~ 60 (307)
T KOG1561|consen 14 ILKRREARQKPEER-GVQTTKKPYLHESGHKHQM----GPGGRFLSADGVSK 60 (307)
T ss_pred cccccccccccccc-ccccccccccCcccccccc----cccccccCcccccc
Confidence 66777777766654 4567889999999999999 88999998444433
No 7
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=38.88 E-value=35 Score=31.85 Aligned_cols=50 Identities=32% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCCceeechhhhHHHHHHHHHH------HHHHhhhhh-----------hccCCCcchhhhhHHHhhccCCCCCcccc
Q 027942 119 AVEEPVFVNAKQYHGILRRRQSR------AKAESENKV-----------LKSRKPYLHESRHLHALRRARGCGGRFLN 179 (216)
Q Consensus 119 ~~eePvyVNaKQY~rIlRRRq~R------aklE~~~kl-----------~k~rkpYLHESRH~HAm~R~Rg~gGRFL~ 179 (216)
+.+.||||++++=+.++.|=.+. .|+..+.|. ++.=|+|-|-| .||||-.
T Consensus 130 I~~~pif~D~~rK~qvI~rt~KELkE~~kLKLRSe~RvPPlD~~GNIlPP~nFkky~h~s-----------aggr~~p 196 (279)
T PF15046_consen 130 ISCTPIFVDPNRKNQVILRTVKELKEFEKLKLRSEARVPPLDAQGNILPPENFKKYRHIS-----------AGGRFEP 196 (279)
T ss_pred hhcccceechhhhhHHHHHHHHHHhhhHhhhhhhhccCCCcCCCCCCcCchhhccccccc-----------CCceecC
Confidence 35689999999998888775543 344444443 34556774444 4999953
No 8
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=25.22 E-value=36 Score=34.14 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCCCceeechhhhHHHHHHHHHHHHHHhhhhhhccCCCcchhh----hhHHHhhccCCCCCcc
Q 027942 119 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKPYLHES----RHLHALRRARGCGGRF 177 (216)
Q Consensus 119 ~~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~k~rkpYLHES----RH~HAm~R~Rg~gGRF 177 (216)
..+|.+.|+.++..+--|....++.+++-|-=+..|..|=||= |.+=|+-|+=--.=+|
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~ 447 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL 447 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE
Confidence 4469999999999999998888888988877788899999993 5555655543333333
No 9
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=23.06 E-value=85 Score=30.61 Aligned_cols=23 Identities=9% Similarity=0.316 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhh
Q 027942 129 KQYHGILRRRQSRAKAESENKVL 151 (216)
Q Consensus 129 KQY~rIlRRRq~RaklE~~~kl~ 151 (216)
+.|++|+-+-.+.+-+|.+|||+
T Consensus 202 RdFQ~vIG~E~k~Qile~egrlP 224 (396)
T COG0133 202 RDFQSVIGEEAKAQILEKEGRLP 224 (396)
T ss_pred HHHHHHHhHHHHHHHHHHhCCCC
Confidence 67999999999999999999986
No 10
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=16.38 E-value=42 Score=31.52 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=47.2
Q ss_pred CCCC----CCCCcccccccCCCCCCCCCCCCCCC-cccccccCC-------CCCCCCCCCCceeechhhhHHHHHHHHHH
Q 027942 74 AYPY----PDPYYRSIFAPYDAQPYPPQPYGGQP-MLMGIQQAG-------VPLPTDAVEEPVFVNAKQYHGILRRRQSR 141 (216)
Q Consensus 74 ~yPy----~Dpyygg~~aaYg~q~~~~~p~~~~p-~l~Gm~~~r-------~plp~~~~eePvyVNaKQY~rIlRRRq~R 141 (216)
.-|| .||-+||+.|+|+.-.. -+..-| -+||..-.| -.||......=.++.--+...|+.|++.|
T Consensus 195 ~lpyIsVLt~PTtGGVsASfA~lGD---i~iAEP~AlIGFAGpRVIEQTire~LPegfQ~aEfLlehG~iD~iv~R~elr 271 (294)
T COG0777 195 GLPYISVLTDPTTGGVSASFAMLGD---IIIAEPGALIGFAGPRVIEQTIREKLPEGFQTAEFLLEHGMIDMIVHRDELR 271 (294)
T ss_pred CCceEEEecCCCccchhHhHHhccC---eeecCcccccccCcchhhhhhhcccCCcchhhHHHHHHcCCceeeecHHHHH
Confidence 4566 79999999999865421 122334 366765444 46776643333455566778899999999
Q ss_pred HHHHhhh
Q 027942 142 AKAESEN 148 (216)
Q Consensus 142 aklE~~~ 148 (216)
..+..--
T Consensus 272 ~tla~ll 278 (294)
T COG0777 272 TTLASLL 278 (294)
T ss_pred HHHHHHH
Confidence 9987643
Done!