Query 027942
Match_columns 216
No_of_seqs 136 out of 205
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.7E-38 5.8E-43 230.9 5.5 63 120-182 1-64 (64)
2 3hde_A Lysozyme; antimicrobial 10.5 1.3E+02 0.0044 23.8 2.1 25 122-146 137-161 (165)
3 2anv_A Lysozyme; direct method 10.4 94 0.0032 23.8 1.2 21 123-144 123-143 (146)
4 1b9w_A Protein (merozoite surf 10.1 49 0.0017 25.4 -0.5 19 70-88 70-89 (95)
5 1xju_A Lysozyme; secreted inac 9.9 1.4E+02 0.0048 23.4 2.1 26 122-147 127-152 (163)
6 1xjt_A Lysozyme; open conforma 7.8 1.9E+02 0.0064 23.5 2.1 27 122-148 155-181 (191)
7 2xc7_A Phosphorylated adapter 7.8 38 0.0013 26.0 -1.9 17 167-183 60-76 (104)
8 3n8i_A Low molecular weight ph 7.8 1.1E+02 0.0039 23.6 0.7 9 77-85 127-135 (157)
9 2k2w_A Recombination and DNA r 7.1 1.2E+02 0.0043 23.8 0.7 13 121-133 17-29 (118)
10 3q12_A Pantoate--beta-alanine 6.9 1.1E+02 0.0039 27.0 0.4 11 122-132 56-66 (287)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.7e-38 Score=230.89 Aligned_cols=63 Identities=59% Similarity=1.000 Sum_probs=58.6
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHhhhhhh-ccCCCcchhhhhHHHhhccCCCCCccccccc
Q 027942 120 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKPYLHESRHLHALRRARGCGGRFLNSKK 182 (216)
Q Consensus 120 ~eePvyVNaKQY~rIlRRRq~RaklE~~~kl~-k~rkpYLHESRH~HAm~R~Rg~gGRFL~~k~ 182 (216)
.|+|||||||||++|||||++|+|+|++++++ +.||||||||||+|||+|+||+||||||++|
T Consensus 1 ~eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 1 MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp --CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 37999999999999999999999999999985 8899999999999999999999999999875
No 2
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=10.48 E-value=1.3e+02 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=19.2
Q ss_pred CceeechhhhHHHHHHHHHHHHHHh
Q 027942 122 EPVFVNAKQYHGILRRRQSRAKAES 146 (216)
Q Consensus 122 ePvyVNaKQY~rIlRRRq~RaklE~ 146 (216)
.-+|++-|...++.+||++...|=.
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEchhHHHHHHHHHHHHH
Confidence 3456677888999999998877644
No 3
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=10.37 E-value=94 Score=23.75 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.4
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 027942 123 PVFVNAKQYHGILRRRQSRAKA 144 (216)
Q Consensus 123 PvyVNaKQY~rIlRRRq~Rakl 144 (216)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566667 88999999987765
No 4
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=10.14 E-value=49 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.9
Q ss_pred cccc-CCCCCCCCccccccc
Q 027942 70 MAPA-AYPYPDPYYRSIFAP 88 (216)
Q Consensus 70 ~a~~-~yPy~Dpyygg~~aa 88 (216)
|+|+ ..||..|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 5555 899999999999975
No 5
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=9.92 E-value=1.4e+02 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.5
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhh
Q 027942 122 EPVFVNAKQYHGILRRRQSRAKAESE 147 (216)
Q Consensus 122 ePvyVNaKQY~rIlRRRq~RaklE~~ 147 (216)
.-++++-|...++.+||++...|=..
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~ 152 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLT 152 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhC
Confidence 35566778899999999998887654
No 6
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.84 E-value=1.9e+02 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.0
Q ss_pred CceeechhhhHHHHHHHHHHHHHHhhh
Q 027942 122 EPVFVNAKQYHGILRRRQSRAKAESEN 148 (216)
Q Consensus 122 ePvyVNaKQY~rIlRRRq~RaklE~~~ 148 (216)
.-+|++-|...++.+||++...|=..+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 455667788999999999988876543
No 7
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=7.80 E-value=38 Score=25.96 Aligned_cols=17 Identities=53% Similarity=0.565 Sum_probs=13.5
Q ss_pred hhccCCCCCcccccccc
Q 027942 167 LRRARGCGGRFLNSKKN 183 (216)
Q Consensus 167 m~R~Rg~gGRFL~~k~~ 183 (216)
-.|+|-|||-||+-=+.
T Consensus 60 G~RrRTpGGVF~~LlK~ 76 (104)
T 2xc7_A 60 GSRRRTPGGVFLNLLKN 76 (104)
T ss_dssp SSSCCCHHHHHHHHHHH
T ss_pred CCcCCCCchhHHHHHhc
Confidence 36899999999976543
No 8
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=7.76 E-value=1.1e+02 Score=23.62 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=7.3
Q ss_pred CCCCCcccc
Q 027942 77 YPDPYYRSI 85 (216)
Q Consensus 77 y~Dpyygg~ 85 (216)
-.||||||.
T Consensus 127 VpDPy~~~~ 135 (157)
T 3n8i_A 127 IEDPYYGND 135 (157)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCH
Confidence 479999874
No 9
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=7.10 E-value=1.2e+02 Score=23.79 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=10.6
Q ss_pred CCceeechhhhHH
Q 027942 121 EEPVFVNAKQYHG 133 (216)
Q Consensus 121 eePvyVNaKQY~r 133 (216)
.-=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 4578999999975
No 10
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=6.92 E-value=1.1e+02 Score=26.96 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 027942 122 EPVFVNAKQYH 132 (216)
Q Consensus 122 ePvyVNaKQY~ 132 (216)
--|||||-||.
T Consensus 56 VSIFVNP~QF~ 66 (287)
T 3q12_A 56 VTIFVNPLQFE 66 (287)
T ss_dssp EEECCCGGGCS
T ss_pred EEeccCcccCC
Confidence 36899999953
Done!