Query 027942
Match_columns 216
No_of_seqs 136 out of 205
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 05:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027942.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027942hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kl9a2 b.40.4.5 (A:3-88) Euka 17.7 10 0.00073 24.9 -0.5 23 3-25 1-28 (86)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 12.5 22 0.0016 28.8 0.1 10 122-131 48-57 (276)
3 d1nvpc_ b.56.1.1 (C:) Large ch 11.5 45 0.0033 21.2 1.4 11 6-16 21-31 (47)
4 d1ob1c2 g.3.11.4 (C:46-96) Mer 10.5 36 0.0026 22.1 0.7 22 68-89 27-49 (51)
5 d1ihoa_ c.26.1.4 (A:) Pantothe 9.8 31 0.0023 27.9 0.2 11 122-132 53-63 (282)
6 d1nh2c_ b.56.1.1 (C:) Large ch 8.6 65 0.0047 21.2 1.4 12 6-17 32-43 (59)
7 d2a84a1 c.26.1.4 (A:3-288) Pan 8.3 34 0.0025 27.7 -0.2 12 122-133 62-73 (286)
8 d1xjua_ d.2.1.3 (A:) Endolysin 5.1 1.9E+02 0.014 20.0 2.5 25 125-149 130-154 (158)
9 d1z60a1 g.49.1.2 (A:328-386) T 4.9 74 0.0054 20.8 0.1 7 157-163 47-53 (59)
10 d1ozha1 c.31.1.3 (A:188-366) C 4.6 1.6E+02 0.012 20.6 1.8 23 70-92 56-79 (179)
No 1
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.67 E-value=10 Score=24.87 Aligned_cols=23 Identities=30% Similarity=0.699 Sum_probs=12.9
Q ss_pred cceeeeEEe----e-ccccccccCCCCC
Q 027942 3 LSCRFYMRD----G-LMTSSVHDMSDNS 25 (216)
Q Consensus 3 ~~~~~~~~~----~-~mts~~h~~s~n~ 25 (216)
|+||||... | +.+--|..+.+++
T Consensus 1 ~~cr~~~~~~p~~G~iv~G~V~~i~~~G 28 (86)
T d1kl9a2 1 LSCRFYQHKFPEVEDVVMVNVRSIAEMG 28 (86)
T ss_dssp CCCCSSSSSSCCTTCEEEEEEEEECSSE
T ss_pred CeeeehhhcCCCCCCEEEEEEEEEeCCe
Confidence 688888653 2 4444455555443
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=12.55 E-value=22 Score=28.77 Aligned_cols=10 Identities=50% Similarity=0.737 Sum_probs=7.7
Q ss_pred Cceeechhhh
Q 027942 122 EPVFVNAKQY 131 (216)
Q Consensus 122 ePvyVNaKQY 131 (216)
-.|||||.||
T Consensus 48 vSIFVNP~QF 57 (276)
T d1v8fa_ 48 VSVFVNPLQF 57 (276)
T ss_dssp EEECCCGGGC
T ss_pred EEEEecCccC
Confidence 3689999884
No 3
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.50 E-value=45 Score=21.17 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.1
Q ss_pred eeeEEeecccc
Q 027942 6 RFYMRDGLMTS 16 (216)
Q Consensus 6 ~~~~~~~~mts 16 (216)
+|+.+||||+=
T Consensus 21 Kc~lKdGim~i 31 (47)
T d1nvpc_ 21 KFHLKDGIMNL 31 (47)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEeeEEEE
Confidence 57899999974
No 4
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=10.50 E-value=36 Score=22.08 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=17.2
Q ss_pred cccccc-CCCCCCCCcccccccC
Q 027942 68 HAMAPA-AYPYPDPYYRSIFAPY 89 (216)
Q Consensus 68 hs~a~~-~yPy~Dpyygg~~aaY 89 (216)
.-|+|. .-|-..|||.|+|-.|
T Consensus 27 kkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 27 KKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCCEEEECSTTCCEEGGGTEECC
T ss_pred ceEEEEecCCCCCcccceEEeec
Confidence 346665 6788889999999876
No 5
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=9.75 E-value=31 Score=27.93 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.5
Q ss_pred CceeechhhhH
Q 027942 122 EPVFVNAKQYH 132 (216)
Q Consensus 122 ePvyVNaKQY~ 132 (216)
-.|||||.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 35899998864
No 6
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.64 E-value=65 Score=21.21 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.6
Q ss_pred eeeEEeeccccc
Q 027942 6 RFYMRDGLMTSS 17 (216)
Q Consensus 6 ~~~~~~~~mts~ 17 (216)
+|+.++|||+-.
T Consensus 32 K~~LKdGim~in 43 (59)
T d1nh2c_ 32 KCSLKDGVVTIN 43 (59)
T ss_dssp EEEEEEEEEEET
T ss_pred EEEEeeeEEEEC
Confidence 678999999743
No 7
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.33 E-value=34 Score=27.71 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.5
Q ss_pred CceeechhhhHH
Q 027942 122 EPVFVNAKQYHG 133 (216)
Q Consensus 122 ePvyVNaKQY~r 133 (216)
-.|||||.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 468999999754
No 8
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=5.10 E-value=1.9e+02 Score=19.97 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=18.2
Q ss_pred eechhhhHHHHHHHHHHHHHHhhhh
Q 027942 125 FVNAKQYHGILRRRQSRAKAESENK 149 (216)
Q Consensus 125 yVNaKQY~rIlRRRq~RaklE~~~k 149 (216)
+.+-|-..++.+||++.+.|=.++.
T Consensus 130 ~~~g~~~~GL~~RR~~E~~L~l~g~ 154 (158)
T d1xjua_ 130 NSNGVPLRGLKIRREKERQLCLTGL 154 (158)
T ss_dssp EETTEECHHHHHHHHHHHHHHHTTT
T ss_pred hcCCEEChhHHHHHHHHHHHHHccc
Confidence 3344557899999999888866654
No 9
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.91 E-value=74 Score=20.85 Aligned_cols=7 Identities=43% Similarity=1.028 Sum_probs=3.9
Q ss_pred cchhhhh
Q 027942 157 YLHESRH 163 (216)
Q Consensus 157 YLHESRH 163 (216)
|+||+.|
T Consensus 47 fiHe~lh 53 (59)
T d1z60a1 47 FVHDSLH 53 (59)
T ss_dssp TTTTTSC
T ss_pred hhhhhhc
Confidence 4566555
No 10
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}
Probab=4.58 E-value=1.6e+02 Score=20.60 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=16.2
Q ss_pred ccccCCCCCC-CCcccccccCCCC
Q 027942 70 MAPAAYPYPD-PYYRSIFAPYDAQ 92 (216)
Q Consensus 70 ~a~~~yPy~D-pyygg~~aaYg~q 92 (216)
++...+|..+ |+|+|++..+|..
T Consensus 56 ~~~g~~~~~~~~~~~G~~g~~~~~ 79 (179)
T d1ozha1 56 QAAGAVNQDNFSRFAGRVGLFNNQ 79 (179)
T ss_dssp GGTTTCCTTTCTTEEEECSSBTTC
T ss_pred ccccccccccccccccccCccccH
Confidence 3445688876 7898888776655
Done!