BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027943
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV+P S ELK A+R ++HPD N DG + ++I QAYE+L++ + +I
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVLSDEKKRQIY 67
Query: 124 ER 125
++
Sbjct: 68 DQ 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRD-SDALIRRIIQAYEILTEYSRLEI 122
Y IL V S SA ++K A+R K Q+HPD N D ++ ++ + + +AYE+L++ + EI
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 123 IER 125
+R
Sbjct: 65 YDR 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
YAILGV+P+ +K A+R ++YHPDV+++ D++A + + +A+E+L + R
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQR 85
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV+P+ + ELK A+R +YHPD N + + ++I QAYE+L++ + E+
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK---FKQISQAYEVLSDAKKRELY 65
Query: 124 ER 125
++
Sbjct: 66 DK 67
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
YAI+GV+P+ +K A+R ++YHPDV+++ D++A + + +A+E+L++ R
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDEQR 62
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSR 119
Y ILGV S S ++K AF +YHPD N+ D++A R I +AYE L++ +R
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANR 64
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV + E++ A++ +YHPD N+ ++++A + I +AYE+LT+
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV + E++ A++ +YHPD N+ ++++A + I +AYE+LT+
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV + E++ A++ +YHPD N+ ++++A + I +AYE+LT+
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y ILGV + S E+K A+ K+YHPD N+D + ++ +AYE+L++
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
Y +LGV + S A++K A++ +++HPD N+D D I +I +AYEIL+
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFI-QISKAYEILS 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEI 122
Y +LGV+ S S ++K A+R ++HPD N D + +++ + + +AYE+L++ + +
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 123 IERECIDPF 131
+R D +
Sbjct: 72 YDRAGCDSW 80
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LG++ + ++ ++K ++R +YHPD N D ++ + I A+ ILT+ ++ I
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 124 ER 125
++
Sbjct: 80 DK 81
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y LG+ S E+K A+R + +YHPD N++ ++ + I +AY++L++ + EI
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 124 ER 125
+R
Sbjct: 65 DR 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTEYSRLEII 123
Y +LGV PS + ELK +R +YHPD + D++ + I +A+EIL + + EI
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKF-KEISEAFEILNDPQKREIY 67
Query: 124 ER 125
++
Sbjct: 68 DQ 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y++LGV + S+ E++ AF+ + HPD N + ++ +I +AYE+L +
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILTE 116
Y++LGV + S+ E++ AF+ + HPD N + ++ +I +AYE+L +
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 57
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGR-DSDALIRRIIQAYEILTEYSRLEI 122
Y +L V S+ +K A+R ++HPD N + + +++ +++ +AYE+L++ + +I
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 123 IERECIDP 130
+R P
Sbjct: 72 YDRYGSGP 79
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEIL 114
Y +LGV + + A++KAA+ + YHPD N ++ RI QAY +L
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVL 70
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPD 92
Y+ILG +PS + ++LK ++ + YHPD
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPD 41
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPD 92
Y+ILG +PS + ++LK ++ + YHPD
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPD 47
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
Y ILGV S +LK A+R ++HPD N ++A + I AY +L+
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAF-KAIGTAYAVLS 60
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPD 92
Y ILGV+ + E+ A+R Q+HPD
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPD 92
Y ILGV+ + E+ A+R Q+HPD
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1FXR|B Chain B, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1DAX|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr,
Minimized Average Structure
pdb|1DFD|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, 19
Structures
Length = 64
Score = 28.9 bits (63), Expect = 2.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 156 SCVKTAPNAFSYSSSTGTARAISQGHGQDYRVQLAVGQCPRSCIHY 201
SCV+ AP AF+ A V+ A+ CP CIH+
Sbjct: 16 SCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHW 61
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 64 YAILGVEPSCSAAELKAAFRAKVKQYHPDVNRDGRDSDALIRRIIQAYEILT 115
Y +LG + S ++ A F+ + + HPD + + + +++ +A EILT
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,132,951
Number of Sequences: 62578
Number of extensions: 223127
Number of successful extensions: 509
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 27
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)